=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderd54aeCr/inputs/cctbx_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.buildinfo Source: cctbx Version: 2026.9+ds2+~3.30.1+ds1-1 rebuilderd-worker node: osuosl44-amd64 +------------------------------------------------------------------------------+ | Downloading sources Wed, 14 Oct 2026 10:29:34 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.7 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [151 kB] Get:7 https://deb.debian.org/debian sid InRelease [193 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:10 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [240 kB] Get:12 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [1,840 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [142 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [3,412 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [324 kB] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [7,896 B] Get:18 https://deb.debian.org/debian forky/main Sources [11.3 MB] Get:19 https://deb.debian.org/debian sid/main Sources [12.0 MB] Get:20 https://deb.debian.org/debian sid/non-free-firmware Sources [10.6 kB] Get:21 https://deb.debian.org/debian experimental/main Sources [387 kB] Get:22 https://deb.debian.org/debian experimental/non-free-firmware Sources [2,568 B] Fetched 35.8 MB in 32s (1,101 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.9%2bds2%2b%7e3.30.1%2bds1-1.dsc' cctbx_2026.9+ds2+~3.30.1+ds1-1.dsc 4191 SHA256:5fb7dd936098afc4358de780db7a6fd4fc9d584dd7f03781e9b1236885ecd5d7 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.9%2bds2%2b%7e3.30.1%2bds1.orig-dxtbx.tar.xz' cctbx_2026.9+ds2+~3.30.1+ds1.orig-dxtbx.tar.xz 402668 SHA256:d41002a649c18fef3b687d0ecb41ce6e399c3f168f32af35b472ea5bacfc20c2 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.9%2bds2%2b%7e3.30.1%2bds1.orig.tar.xz' cctbx_2026.9+ds2+~3.30.1+ds1.orig.tar.xz 106529112 SHA256:e0b7ce095abc06e2bf704ffcb3b781d86fd9dac548cbb86e8998ee6652c2ba1e 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.9%2bds2%2b%7e3.30.1%2bds1-1.debian.tar.xz' cctbx_2026.9+ds2+~3.30.1+ds1-1.debian.tar.xz 420388 SHA256:9b6316b514f4be02ecdf7c5092a50f2d455ddbc85cca0c12d510eb8540f77d97 d41002a649c18fef3b687d0ecb41ce6e399c3f168f32af35b472ea5bacfc20c2 cctbx_2026.9+ds2+~3.30.1+ds1.orig-dxtbx.tar.xz e0b7ce095abc06e2bf704ffcb3b781d86fd9dac548cbb86e8998ee6652c2ba1e cctbx_2026.9+ds2+~3.30.1+ds1.orig.tar.xz 9b6316b514f4be02ecdf7c5092a50f2d455ddbc85cca0c12d510eb8540f77d97 cctbx_2026.9+ds2+~3.30.1+ds1-1.debian.tar.xz 5fb7dd936098afc4358de780db7a6fd4fc9d584dd7f03781e9b1236885ecd5d7 cctbx_2026.9+ds2+~3.30.1+ds1-1.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Wed, 14 Oct 2026 10:30:09 +0000 | +------------------------------------------------------------------------------+ Rebuilding cctbx=2026.9+ds2+~3.30.1+ds1-1 in /srv/rebuilderd/tmp/rebuilderd54aeCr/inputs now. + /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderd54aeCr/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderd54aeCr/inputs/cctbx_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.buildinfo /srv/rebuilderd/tmp/rebuilderd54aeCr/inputs/cctbx_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [193 kB] Get:2 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable InRelease [193 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 Packages [10.8 MB] Get:4 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 Packages [10.8 MB] Fetched 21.9 MB in 3s (7433 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20261007T202437Z/dists/unstable/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main amd64 libabsl20260526 amd64 20260526.0-2+b1 [584 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 libacl1 amd64 2.4.0-1 [37.1 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 adwaita-icon-theme all 51.0-1 [493 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libasound2-data all 1.2.16.1-2 [19.4 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libasound2t64 amd64 1.2.16.1-2 [417 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libann-cctbx-dev amd64 1.1.2+doc-9+b1 [44.6 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libann-cctbx0 amd64 1.1.2+doc-9+b1 [32.4 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.14.1-1 [1923 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 architecture-properties amd64 0.2.6+b2 [2632 B] Get:10 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.19-2 [891 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 base-files amd64 14.2 [88.0 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 base-passwd amd64 3.6.8 [54.6 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 bash amd64 5.3-4 [1582 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 binutils amd64 2.47-6 [288 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 binutils-common amd64 2.47-6 [2686 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.47-6 [1132 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 bubblewrap amd64 0.13.0-1 [55.7 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 build-essential amd64 12.12 [4624 B] Get:21 http://deb.debian.org/debian unstable/main amd64 bzip2 amd64 1.0.8-6+b2 [40.4 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20260816 [134 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 coreutils amd64 9.10-1 [3142 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dash amd64 0.5.12-12 [98.5 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 dbus amd64 1.16.2-8 [69.0 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 dbus-bin amd64 1.16.2-8 [76.8 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 dbus-daemon amd64 1.16.2-8 [163 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 dbus-session-bus-common all 1.16.2-8 [49.2 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 dbus-system-bus-common all 1.16.2-8 [50.2 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 dbus-user-session amd64 1.16.2-8 [49.3 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 dconf-gsettings-backend amd64 51.0-2 [31.3 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 dconf-service amd64 51.0-2 [36.3 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 debconf all 1.5.92 [123 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.5 [944 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 debianutils amd64 5.24 [93.3 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 23 [12.7 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 dh-exec amd64 0.31 [26.1 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 dh-python all 7.20260623 [114 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 diffutils amd64 1:3.12-1 [405 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 dpkg amd64 1.23.11 [1214 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 dpkg-dev all 1.23.11 [1005 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.4-1+b2 [51.2 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 fftw-dev amd64 2.1.5-8 [290 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 fftw2 amd64 2.1.5-8 [251 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 findutils amd64 4.11.0-3 [788 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-9 [840 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-extra all 2.37-9 [1791 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-9 [488 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 7.3.0+dfsg-1 [677 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome-legacy all 6-4 [1547 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 fonts-roboto-slab all 2.002+20231012+ds-1 [1159 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-9 [10.8 MB] Get:58 http://deb.debian.org/debian unstable/main amd64 cpp-16 amd64 16.2.0-3 [1272 B] Get:59 http://deb.debian.org/debian unstable/main amd64 cpp-16-x86-64-linux-gnu amd64 16.2.0-3 [13.7 MB] Get:60 http://deb.debian.org/debian unstable/main amd64 g++-16 amd64 16.2.0-3 [35.4 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 g++-16-x86-64-linux-gnu amd64 16.2.0-3 [15.1 MB] Get:62 http://deb.debian.org/debian unstable/main amd64 gcc-16 amd64 16.2.0-3 [538 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 gcc-16-base amd64 16.2.0-3 [38.7 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 gcc-16-x86-64-linux-gnu amd64 16.2.0-3 [26.6 MB] Get:65 http://deb.debian.org/debian unstable/main amd64 libasan8 amd64 16.2.0-3 [2888 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 cpp amd64 4:16.1.0-3 [1568 B] Get:67 http://deb.debian.org/debian unstable/main amd64 cpp-x86-64-linux-gnu amd64 4:16.1.0-3 [4472 B] Get:68 http://deb.debian.org/debian unstable/main amd64 g++ amd64 4:16.1.0-3 [1340 B] Get:69 http://deb.debian.org/debian unstable/main amd64 g++-x86-64-linux-gnu amd64 4:16.1.0-3 [1196 B] Get:70 http://deb.debian.org/debian unstable/main amd64 gcc amd64 4:16.1.0-3 [5148 B] Get:71 http://deb.debian.org/debian unstable/main amd64 gcc-x86-64-linux-gnu amd64 4:16.1.0-3 [1432 B] Get:72 http://deb.debian.org/debian unstable/main amd64 autopoint all 1.0-5 [820 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 gettext amd64 1.0-5 [2704 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 1.0-5 [334 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 grep amd64 3.12-1 [443 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.2-2 [1365 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 gtk-update-icon-cache amd64 4.24.1+ds-1 [41.9 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 gzip amd64 1.14-1 [149 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 2.2.0+repack-5 [27.6 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 hicolor-icon-theme all 0.18-2 [11.8 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 hostname amd64 3.25 [11.0 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 init-system-helpers all 1.69+nmu3 [37.3 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 jq amd64 1.8.2-1 [88.2 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.22.1-3 [125 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.7-1 [25.2 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.7-1 [22.3 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libantlr3c-3.4-0 amd64 3.4+dfsg-4+b3 [51.5 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libantlr3c-dev amd64 3.4+dfsg-4+b3 [132 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.5.3-1 [190 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 ibverbs-providers amd64 65.0-1.1 [424 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libamdhip64-6 amd64 6.4.3-5 [9385 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libamd-comgr3 amd64 7.0.2+dfsg-3 [13.9 MB] Get:95 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:96 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42.4-1 [103 kB] Get:97 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libapparmor1 amd64 4.1.8-2 [38.7 kB] Get:98 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 at-spi2-common all 2.62.0-2 [171 kB] Get:99 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 glycin-loaders amd64 2.2.1+ds-2 [2995 kB] Get:100 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 glycin-thumbnailers amd64 2.2.1+ds-2 [208 kB] Fetched 134 MB in 2s (54.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libann-cctbx0_1.1.2+doc-9+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libasound2-data_1.2.16.1-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dpkg_1.23.11_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/gettext_1.0-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libann-cctbx-dev_1.1.2+doc-9+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libabsl20260526_20260526.0-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/cpp-16_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/fonts-lyx_2.5.3-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/hostname_3.25_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/debhelper_14.5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libaom3_3.14.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/g++-16_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libapparmor1_4.1.8-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dbus-session-bus-common_1.16.2-8_all.deb' dpkg-name: info: moved 'file_1%3a5.47-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpz8cg_y88/file_5.47-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dbus_1.16.2-8_amd64.deb' dpkg-name: info: moved 'diffutils_1%3a3.12-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpz8cg_y88/diffutils_3.12-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/fftw-dev_2.1.5-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/bsdextrautils_2.42.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libantlr3c-dev_3.4+dfsg-4+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/build-essential_12.12_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/adwaita-icon-theme_51.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/coreutils_9.10-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/bubblewrap_0.13.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/gzip_1.14-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libantlr3c-3.4-0_3.4+dfsg-4+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/debianutils_5.24_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/glycin-loaders_2.2.1+ds-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dwz_0.17-1_amd64.deb' dpkg-name: info: moved 'cpp-x86-64-linux-gnu_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpz8cg_y88/cpp-x86-64-linux-gnu_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libacl1_2.4.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/base-passwd_3.6.8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dh-python_7.20260623_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/autotools-dev_20240727.1+nmu1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/fonts-lato_2.015-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/fonts-font-awesome_7.3.0+dfsg-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/intltool-debian_0.35.0+20060710.6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dh-strip-nondeterminism_1.15.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/binutils-common_2.47-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/ibverbs-providers_65.0-1.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/grep_3.12-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dash_0.5.12-12_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/fftw2_2.1.5-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/gcc-16_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/debconf_1.5.92_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/comerr-dev_2.1-1.47.4-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/glycin-thumbnailers_2.2.1+ds-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/autopoint_1.0-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/fontconfig_2.17.1-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libamdhip64-6_6.4.3-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/hicolor-icon-theme_0.18-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/fontconfig-config_2.17.1-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libaec-dev_1.1.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libamd-comgr3_7.0.2+dfsg-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/fonts-roboto-slab_2.002+20231012+ds-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/g++-16-x86-64-linux-gnu_16.2.0-3_amd64.deb' dpkg-name: info: moved 'cpp_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpz8cg_y88/cpp_16.1.0-3_amd64.deb' dpkg-name: info: moved 'gcc_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpz8cg_y88/gcc_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libasan8_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libasound2t64_1.2.16.1-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dpkg-dev_1.23.11_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/krb5-multidev_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/hdf5-helpers_2.2.0+repack-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libarchive-zip-perl_1.68-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/cpp-16-x86-64-linux-gnu_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/fonts-dejavu-extra_2.37-9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dh-exec_0.31_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/jq_1.8.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/gettext-base_1.0-5_amd64.deb' dpkg-name: info: moved 'automake_1%3a1.19-2_all.deb' to '/srv/rebuilderd/tmp/tmpz8cg_y88/automake_1.19-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/binutils-x86-64-linux-gnu_2.47-6_amd64.deb' dpkg-name: info: moved 'g++_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpz8cg_y88/g++_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/gcc-16-base_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dbus-user-session_1.16.2-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/groff-base_1.24.2-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/autoconf_2.73-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dconf-service_51.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dconf-gsettings-backend_51.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/fonts-dejavu-core_2.37-9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/architecture-properties_0.2.6+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/at-spi2-common_2.62.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/bash_5.3-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/fonts-dejavu-mono_2.37-9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/bzip2_1.0.8-6+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dbus-system-bus-common_1.16.2-8_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/findutils_4.11.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/ca-certificates_20260816_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/binutils_2.47-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dbus-daemon_1.16.2-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/fonts-urw-base35_20200910-9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/gtk-update-icon-cache_4.24.1+ds-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dbus-bin_1.16.2-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/gcc-16-x86-64-linux-gnu_16.2.0-3_amd64.deb' dpkg-name: info: moved 'gcc-x86-64-linux-gnu_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpz8cg_y88/gcc-x86-64-linux-gnu_16.1.0-3_amd64.deb' dpkg-name: info: moved 'g++-x86-64-linux-gnu_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpz8cg_y88/g++-x86-64-linux-gnu_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/libaec0_1.1.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/init-system-helpers_1.69+nmu3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/fonts-font-awesome-legacy_6-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/base-files_14.2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8cg_y88/dh-autoreconf_23_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libattr1 amd64 1:2.6.0-1 [24.7 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 libaudit-common all 1:4.2.1-1 [13.3 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libaudit1 amd64 1:4.2.1-1 [59.6 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-18 [49.2 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-18 [113 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-18 [45.2 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libbinutils amd64 2.47-6 [562 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libctf-nobfd0 amd64 2.47-6 [166 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libctf0 amd64 2.47-6 [98.2 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.92.0.1 [3260 B] Get:11 http://deb.debian.org/debian unstable/main amd64 libboost-numpy-dev amd64 1.92.0.1 [3092 B] Get:12 http://deb.debian.org/debian unstable/main amd64 libboost-python-dev amd64 1.92.0.1 [3352 B] Get:13 http://deb.debian.org/debian unstable/main amd64 libboost-thread-dev amd64 1.92.0.1 [3080 B] Get:14 http://deb.debian.org/debian unstable/main amd64 libboost-timer-dev amd64 1.92.0.1 [3180 B] Get:15 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.2.0-4+b1 [324 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libbz2-1.0 amd64 1.0.8-6+b2 [39.9 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libcairo-gobject2 amd64 1.18.4-3+b1 [129 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libcbf-dev amd64 0.9.7+dfsg1-5.1+b3 [486 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libcbf1t64 amd64 0.9.7+dfsg1-5.1+b3 [386 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libdebconfclient0 amd64 0.283 [7572 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libclipper-dev amd64 2.1.20201109-2+b4 [82.5 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libclipper2 amd64 2.1.20201109-2+b4 [1178 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libcolord2 amd64 1.4.8-3 [141 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.18-1 [252 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.4-1 [583 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-11+b1 [709 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.16.2-8 [184 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libdconf1 amd64 51.0-2 [45.3 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.5 [77.7 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libdouble-conversion3 amd64 3.4.0-1+b1 [40.7 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libdpkg-perl all 1.23.11 [650 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.4-1+b2 [19.5 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libatomic1 amd64 16.2.0-3 [10.4 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libcc1-0 amd64 16.2.0-3 [46.1 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libc-bin amd64 2.43-7 [621 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libc-dev-bin amd64 2.43-7 [39.7 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libc-gconv-modules-extra amd64 2.43-7 [1103 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libc6 amd64 2.43-7 [1866 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libc6-dev amd64 2.43-7 [2069 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libasyncns0 amd64 0.8-8 [12.4 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.4.2-1 [147 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-3 [132 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libcap-ng0 amd64 0.9.6-1 [19.0 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libcap2 amd64 1:2.78-1+b1 [28.8 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libccp4-data all 8.0.0-5 [62.5 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libccp4-dev amd64 8.0.0-5+b1 [42.7 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libccp4c0t64 amd64 8.0.0-5+b1 [90.4 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libccp4f0t64 amd64 8.0.0-5+b1 [208 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libcloudproviders0 amd64 0.4.1-1 [29.6 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.14-2 [39.1 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libde265-0 amd64 1.1.3-1+b1 [219 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libdecor-0-0 amd64 0.2.5-1+b1 [15.8 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.25-1 [56.7 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.134-3 [23.3 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.134-3 [7860 B] Get:60 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.134-3 [64.2 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.134-3 [38.5 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libcrypt1 amd64 1:4.5.2+20251210-1 [100 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libclang-common-21-dev amd64 1:21.1.8-13 [769 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libblkid1 amd64 2.42.4-1 [185 kB] Get:65 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libatk-bridge2.0-0t64 amd64 2.62.0-2 [69.3 kB] Get:66 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libatk1.0-0t64 amd64 2.62.0-2 [51.7 kB] Get:67 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libatspi2.0-0t64 amd64 2.62.0-2 [86.9 kB] Get:68 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-atomic1.92-dev amd64 1.92.0-3 [231 kB] Get:69 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-atomic1.92.0 amd64 1.92.0-3 [228 kB] Get:70 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-chrono1.92-dev amd64 1.92.0-3 [246 kB] Get:71 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-chrono1.92.0 amd64 1.92.0-3 [239 kB] Get:72 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-container1.92-dev amd64 1.92.0-3 [259 kB] Get:73 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-container1.92.0 amd64 1.92.0-3 [253 kB] Get:74 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-date-time1.92-dev amd64 1.92.0-3 [234 kB] Get:75 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-date-time1.92.0 amd64 1.92.0-3 [223 kB] Get:76 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-exception1.92-dev amd64 1.92.0-3 [225 kB] Get:77 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-graph1.92-dev amd64 1.92.0-3 [394 kB] Get:78 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-graph1.92.0 amd64 1.92.0-3 [362 kB] Get:79 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-math1.92-dev amd64 1.92.0-3 [519 kB] Get:80 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-math1.92.0 amd64 1.92.0-3 [476 kB] Get:81 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-numpy1.92-dev amd64 1.92.0-3 [240 kB] Get:82 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-numpy1.92.0 amd64 1.92.0-3 [235 kB] Get:83 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-python1.92-dev amd64 1.92.0-3 [327 kB] Get:84 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-python1.92.0 amd64 1.92.0-3 [304 kB] Get:85 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-random1.92-dev amd64 1.92.0-3 [241 kB] Get:86 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-random1.92.0 amd64 1.92.0-3 [238 kB] Get:87 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-regex1.92-dev amd64 1.92.0-3 [339 kB] Get:88 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-regex1.92.0 amd64 1.92.0-3 [320 kB] Get:89 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-serialization1.92-dev amd64 1.92.0-3 [381 kB] Get:90 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-serialization1.92.0 amd64 1.92.0-3 [336 kB] Get:91 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-test1.92-dev amd64 1.92.0-3 [557 kB] Get:92 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-test1.92.0 amd64 1.92.0-3 [465 kB] Get:93 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-thread1.92-dev amd64 1.92.0-3 [270 kB] Get:94 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-thread1.92.0 amd64 1.92.0-3 [261 kB] Get:95 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-timer1.92-dev amd64 1.92.0-3 [231 kB] Get:96 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost-timer1.92.0 amd64 1.92.0-3 [228 kB] Get:97 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libboost1.92-dev amd64 1.92.0-3 [11.6 MB] Get:98 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libcurl4-gnutls amd64 8.23.0~rc2-1 [463 kB] Get:99 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libcurl4-openssl-dev amd64 8.23.0~rc2-1 [600 kB] Get:100 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libcurl4t64 amd64 8.23.0~rc2-1 [467 kB] Fetched 37.8 MB in 2s (21.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libc6_2.43-7_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-numpy1.92.0_1.92.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libcap-ng0_0.9.6-1_amd64.deb' dpkg-name: warning: 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'/srv/rebuilderd/tmp/tmpl965lam3/libcurl4t64_8.23.0~rc2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-numpy-dev_1.92.0.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libdecor-0-0_0.2.5-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libclipper-dev_2.1.20201109-2+b4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libblkid1_2.42.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-exception1.92-dev_1.92.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-regex1.92-dev_1.92.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libc-gconv-modules-extra_2.43-7_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libdeflate-dev_1.25-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-container1.92.0_1.92.0-3_amd64.deb' dpkg-name: 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'/srv/rebuilderd/tmp/tmpl965lam3/libdrm-amdgpu1_2.4.134-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-container1.92-dev_1.92.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libc-bin_2.43-7_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libavahi-client3_0.8-18_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-chrono1.92.0_1.92.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libavahi-common-data_0.8-18_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-timer1.92-dev_1.92.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-timer1.92.0_1.92.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-dev_1.92.0.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libccp4c0t64_8.0.0-5+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libcbf-dev_0.9.7+dfsg1-5.1+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libasyncns0_0.8-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-timer-dev_1.92.0.1_amd64.deb' dpkg-name: info: moved 'libaudit-common_1%3a4.2.1-1_all.deb' to '/srv/rebuilderd/tmp/tmpl965lam3/libaudit-common_4.2.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-graph1.92-dev_1.92.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libcloudproviders0_0.4.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-test1.92.0_1.92.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libdatrie1_0.2.14-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-python-dev_1.92.0.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-regex1.92.0_1.92.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libcom-err2_1.47.4-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libctf0_2.47-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libdav1d7_1.5.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libde265-0_1.1.3-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libatk1.0-0t64_2.62.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libbz2-1.0_1.0.8-6+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-graph1.92.0_1.92.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libatk-bridge2.0-0t64_2.62.0-2_amd64.deb' dpkg-name: info: moved 'libaudit1_1%3a4.2.1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpl965lam3/libaudit1_4.2.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libc6-dev_2.43-7_amd64.deb' dpkg-name: info: moved 'libcap2_1%3a2.78-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpl965lam3/libcap2_2.78-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libdrm2_2.4.134-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libdeflate0_1.25-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-math1.92.0_1.92.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-thread1.92.0_1.92.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libdconf1_51.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libdpkg-perl_1.23.11_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-date-time1.92.0_1.92.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libboost-test1.92-dev_1.92.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl965lam3/libdebhelper-perl_14.5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgprofng0 amd64 2.47-6 [846 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 5.0.1-3 [1192 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.9.0-1 [133 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.9.0-1 [191 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libfftw3-bin amd64 3.3.11-1 [46.6 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libfftw3-dev amd64 3.3.11-1 [2063 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libfftw3-double3 amd64 3.3.11-1 [713 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libfftw3-long3 amd64 3.3.11-1 [313 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.11-1 [554 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libfftw3-single3 amd64 3.3.11-1 [738 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libflac14 amd64 1.5.0+ds-5+b1 [179 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libglut3.12 amd64 3.4.0-6+b2 [142 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.14.3+dfsg-3 [510 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libfuse3-4 amd64 3.18.3-1 [109 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libgcc-16-dev amd64 16.2.0-3 [2782 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libgcc-s1 amd64 16.2.0-3 [74.0 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 16.2.0-3 [879 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libgomp1 amd64 16.2.0-3 [151 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libhwasan0 amd64 16.2.0-3 [1580 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libitm1 amd64 16.2.0-3 [26.9 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libgdk-pixbuf-2.0-0 amd64 2.44.8+dfsg-1 [103 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libgdk-pixbuf2.0-common all 2.44.8+dfsg-1 [316 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libglew2.3 amd64 2.3.1+dfsg2-5 [161 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.90.1-2 [1620 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5+b2 [641 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5+b2 [560 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5+b2 [328 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.13-1 [496 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.13-1 [1479 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libgtk-3-0t64 amd64 3.24.52-2 [3067 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libgtk-3-common all 3.24.52-2 [4929 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libharfbuzz-subset0 amd64 12.3.2-2+b2 [574 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libhdf5-320 amd64 2.2.0+repack-5 [2177 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-320 amd64 2.2.0+repack-5 [144 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 2.2.0+repack-5 [4248 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-320 amd64 2.2.0+repack-5 [123 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-320 amd64 2.2.0+repack-5 [82.0 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-320 amd64 2.2.0+repack-5 [27.4 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-320 amd64 2.2.0+repack-5 [50.1 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libhwy1t64 amd64 1.3.0-5.1 [694 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libhwloc-plugins amd64 2.15.0-2 [22.4 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.15.0-2 [178 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:52 http://deb.debian.org/debian unstable/main amd64 libisl23 amd64 0.28-1 [667 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libjansson4 amd64 2.15.1-1 [65.6 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libjbig-dev amd64 2.1-6.1+b3 [31.4 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.22.1-3 [58.3 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20260512-1 [93.6 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libepoxy0 amd64 1.5.10-2+b2 [199 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libesmtp6 amd64 1.1.0-3.2+b2 [59.3 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.13-stable-1 [183 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.13-stable-1 [133 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.13-stable-1 [53.8 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libfabric1 amd64 2.1.0-1.1+b2 [716 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b3 [23.4 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libgav1-2 amd64 0.20.0-2+b2 [372 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libgcrypt20 amd64 1.12.4-2 [936 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libglu1-mesa amd64 9.0.2-1.1+b4 [191 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libglu1-mesa-dev amd64 9.0.2-1.1+b4 [229 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libegl1 amd64 1.7.0-3+b1 [35.0 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libgl-dev amd64 1.7.0-3+b1 [99.8 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libgl1 amd64 1.7.0-3+b1 [87.1 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libgles2 amd64 1.7.0-3+b1 [16.7 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-3+b1 [54.3 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libglx-dev amd64 1.7.0-3+b1 [15.0 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-3+b1 [34.9 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libgpg-error0 amd64 1.61-5 [93.1 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 libgudev-1.0-0 amd64 238-7+b2 [14.4 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-5 [102 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 4.4.1-1+b2 [255 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libinput-bin amd64 1.31.3-1 [28.0 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libinput10 amd64 1.31.3-1 [160 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libegl-mesa0 amd64 26.2.4-1 [140 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libgbm1 amd64 26.2.4-1 [57.0 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 26.2.4-1 [37.8 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 26.2.4-1 [132 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libhogweed6t64 amd64 3.10.2-1+b1 [335 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libibmad5 amd64 65.0-1.1 [44.3 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libibumad3 amd64 65.0-1.1 [29.8 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libibverbs1 amd64 65.0-1.1 [68.2 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libhsa-runtime64-1 amd64 6.4.3+dfsg-5 [678 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:96 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libglycin-2-0 amd64 2.2.1+ds-2 [1615 kB] Get:97 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libevdev2 amd64 1.13.7+dfsg-1 [33.2 kB] Get:98 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libheif-plugin-dav1d amd64 1.23.4-1+b1 [21.4 kB] Get:99 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libheif-plugin-libde265 amd64 1.23.4-1+b1 [18.9 kB] Get:100 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libheif1 amd64 1.23.4-1+b1 [867 kB] Fetched 57.2 MB in 2s (23.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libevdev2_1.13.7+dfsg-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libharfbuzz-subset0_12.3.2-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libfftw3-dev_3.3.11-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libhsa-runtime64-1_6.4.3+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libffi8_3.8.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libexpat1-dev_2.9.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libfabric1_2.1.0-1.1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libglu1-mesa_9.0.2-1.1+b4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libglvnd0_1.7.0-3+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libibmad5_65.0-1.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgudev-1.0-0_238-7+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libjansson4_2.15.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libimagequant0_4.4.1-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libhdf5-hl-fortran-320_2.2.0+repack-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libibumad3_65.0-1.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgdbm6t64_1.26-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libhwloc15_2.15.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libfftw3-quad3_3.3.11-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgssrpc4t64_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libinput10_1.31.3-1_amd64.deb' dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-5+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpdrdjcc93/libgmp-dev_6.3.0+dfsg-5+b2_amd64.deb' dpkg-name: 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'/srv/rebuilderd/tmp/tmpdrdjcc93/libflac14_1.5.0+ds-5+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libhdf5-dev_2.2.0+repack-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgpg-error0_1.61-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libeigen3-dev_5.0.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libfftw3-bin_3.3.11-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libfftw3-long3_3.3.11-1_amd64.deb' dpkg-name: info: moved 'libfontenc1_1%3a1.1.8-1+b3_amd64.deb' to '/srv/rebuilderd/tmp/tmpdrdjcc93/libfontenc1_1.1.8-1+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libhogweed6t64_3.10.2-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgdbm-compat4t64_1.26-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libevent-core-2.1-7t64_2.1.13-stable-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libglew2.3_2.3.1+dfsg2-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libevent-pthreads-2.1-7t64_2.1.13-stable-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libhwloc-plugins_2.15.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgfortran5_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgtk-3-common_3.24.52-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libhdf5-fortran-320_2.2.0+repack-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libidn2-0_2.3.8-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libisl23_0.28-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgnutls-dane0t64_3.8.13-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libesmtp6_1.1.0-3.2+b2_amd64.deb' dpkg-name: 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'/srv/rebuilderd/tmp/tmpdrdjcc93/libfreetype6_2.14.3+dfsg-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libglib2.0-0t64_2.90.1-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libfftw3-double3_3.3.11-1_amd64.deb' dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-5+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpdrdjcc93/libgmpxx4ldbl_6.3.0+dfsg-5+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgdk-pixbuf2.0-common_2.44.8+dfsg-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgav1-2_0.20.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libhdf5-cpp-320_2.2.0+repack-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgnutls28-dev_3.8.13-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libheif-plugin-dav1d_1.23.4-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libhwy1t64_1.3.0-5.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libhdf5-hl-320_2.2.0+repack-5_amd64.deb' dpkg-name: info: moved 'libice6_2%3a1.1.1-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpdrdjcc93/libice6_1.1.1-1+b2_amd64.deb' dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpdrdjcc93/libgmp10_6.3.0+dfsg-5+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libglycin-2-0_2.2.1+ds-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgl1-mesa-dri_26.2.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgcc-16-dev_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libidn2-dev_2.3.8-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgdk-pixbuf-2.0-0_2.44.8+dfsg-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libglx-mesa0_26.2.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libicu78_78.3-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgcc-s1_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgbm1_26.2.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libfuse3-4_3.18.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libhdf5-hl-cpp-320_2.2.0+repack-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libinput-bin_1.31.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libfontconfig1_2.17.1-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgprofng0_2.47-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libfribidi0_1.0.16-5+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libevent-2.1-7t64_2.1.13-stable-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgtk-3-0t64_3.24.52-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libegl1_1.7.0-3+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libfftw3-single3_3.3.11-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgraphite2-3_1.3.15-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libibverbs1_65.0-1.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libjbig0_2.1-6.1+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgnutls30t64_3.8.13-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libepoxy0_1.5.10-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libgssapi-krb5-2_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrdjcc93/libglu1-mesa-dev_9.0.2-1.1+b4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 liblsan0 amd64 16.2.0-3 [1281 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libjxl0.11 amd64 0.11.2-5.1 [1273 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libjq1 amd64 1.8.2-1 [170 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:7 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.22.1-3 [40.3 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.22.1-3 [54.1 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.22.1-3 [41.3 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.22.1-3 [14.0 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libmp3lame0 amd64 4.0-1 [289 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.19.1-1 [164 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 liblerc-dev amd64 4.2.0+ds-1 [205 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.2.0+ds-1 [203 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libopengl-dev amd64 1.7.0-3+b1 [4580 B] Get:20 http://deb.debian.org/debian unstable/main amd64 libopengl0 amd64 1.7.0-3+b1 [30.4 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:3.1.3-4 [78.8 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:3.1.3-4 [356 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 liblzf1 amd64 3.6-4+b4 [10.1 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libmd0 amd64 1.3.0-1 [45.4 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libnl-3-200 amd64 3.12.0-2+b1 [62.2 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.12.0-2+b1 [200 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libnotify4 amd64 0.8.8-1+b1 [27.2 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libogg0 amd64 1.3.6-2+b1 [24.0 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libonig5 amd64 6.9.10-1+b1 [192 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.19-2 [18.5 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.59-1 [293 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.23.3-1 [30.1 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libllvm21 amd64 1:21.1.8-13 [28.3 MB] Get:38 http://deb.debian.org/debian unstable/main amd64 libllvm22 amd64 1:22.1.8-1+b2 [29.4 MB] Get:39 http://deb.debian.org/debian unstable/main amd64 liblz4-1 amd64 1.10.0-10 [70.3 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 liblz4-dev amd64 1.10.0-10 [94.9 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libmd4c0 amd64 0.5.3-1 [49.5 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libmmdb2-0 amd64 2.0.22-1+b3 [346 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libmmdb2-dev amd64 2.0.22-1+b3 [92.9 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libmpc3 amd64 1.3.1-3 [52.2 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libmpfr6 amd64 4.2.2-3 [729 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libmpg123-0t64 amd64 1.33.7-1 [154 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libmtdev1t64 amd64 1.1.7-1+b2 [23.2 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libnetcdf22 amd64 1:4.10.1-1+b1 [556 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libnettle8t64 amd64 3.10.2-1+b1 [305 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.70.0-1 [131 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.17.0-1 [96.3 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl-dev amd64 1.24.0-1 [27.5 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.24.0-1 [204 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.19-1+b2 [22.0 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.4-1.1 [205 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.14+dfsg-2 [321 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libopenmpi40 amd64 6.0.0~rc2-2 [2880 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libopus0 amd64 1.6.1-1+b1 [3484 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.26.5-1 [226 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libpam-modules amd64 1.7.0-8 [168 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libpam-modules-bin amd64 1.7.0-8 [46.3 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libpam-runtime all 1.7.0-8 [246 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libpam0g amd64 1.7.0-8 [66.9 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.58.2-1 [233 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.58.2-1 [35.3 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.58.2-1 [56.0 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.48-3.1 [295 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.48-3.1 [282 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libpcre2-8-0 amd64 10.48-3.1 [312 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 libperl5.42 amd64 5.42.3-1 [4272 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libpmix2t64 amd64 7.0.0~rc1-2 [839 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libpopt0 amd64 1.19+dfsg-2+b2 [43.8 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libproc2-1 amd64 2:4.0.7-1 [73.0 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libpulse0 amd64 17.0+dfsg1-3 [283 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.14.7-3 [1012 B] Get:87 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.14.7-3 [8492 B] Get:88 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:89 http://deb.debian.org/debian unstable/main amd64 libpython3.14 amd64 3.14.8-1 [2528 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libpython3.14-dev amd64 3.14.8-1 [5825 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libpython3.14-minimal amd64 3.14.8-1 [902 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libpython3.14-stdlib amd64 3.14.8-1 [2367 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-9 [248 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libqt5core5t64 amd64 5.15.19+dfsg-5 [1974 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 libqt5dbus5t64 amd64 5.15.19+dfsg-5 [217 kB] Get:96 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 9.1.0-9 [46.3 kB] Get:97 http://deb.debian.org/debian unstable/main amd64 libpam-systemd amd64 262-1 [346 kB] Get:98 http://deb.debian.org/debian unstable/main amd64 libmount1 amd64 2.42.4-1 [232 kB] Get:99 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.8.4-1 [391 kB] Get:100 http://deb.debian.org/debian unstable/main amd64 liblzma5 amd64 5.8.4-1 [354 kB] Fetched 101 MB in 1s (74.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpangocairo-1.0-0_1.58.2-1_amd64.deb' dpkg-name: info: moved 'libnetcdf22_1%3a4.10.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpeawkouc0/libnetcdf22_4.10.1-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libngtcp2-crypto-ossl0_1.24.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libmmdb2-dev_2.0.22-1+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpmix2t64_7.0.0~rc1-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libopenjp2-7_2.5.4-1.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libkrb5-dev_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpsl5t64_0.23.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libjxl0.11_0.11.2-5.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libkadm5srv-mit12_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/liblz4-1_1.10.0-10_amd64.deb' dpkg-name: info: moved 'libjpeg62-turbo-dev_1%3a3.1.3-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpeawkouc0/libjpeg62-turbo-dev_3.1.3-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libjq1_1.8.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpam-modules_1.7.0-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libmmdb2-0_2.0.22-1+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libk5crypto3_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libjs-sphinxdoc_9.1.0-9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libkrb5support0_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libmp3lame0_4.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/liblzma-dev_5.8.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libonig5_6.9.10-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/liblerc4_4.2.0+ds-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpciaccess0_0.19-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libogg0_1.3.6-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpangoft2-1.0-0_1.58.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpython3.14-stdlib_3.14.8-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libnghttp2-dev_1.70.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libmd0_1.3.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpopt0_1.19+dfsg-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpython3.14-dev_3.14.8-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libldap2_2.6.14+dfsg-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libngtcp2-dev_1.24.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpam0g_1.7.0-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libmount1_2.42.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libmpg123-0t64_1.33.7-1_amd64.deb' dpkg-name: info: moved 'libmagic1t64_1%3a5.47-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpeawkouc0/libmagic1t64_5.47-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpcre2-8-0_10.48-3.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libopenmpi40_6.0.0~rc2-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libmtdev1t64_1.1.7-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libqt5dbus5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libldap-dev_2.6.14+dfsg-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libopengl0_1.7.0-3+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libqhull-r8.0_2020.2-9_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libnettle8t64_3.10.2-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libkeyutils1_1.6.3-6+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpam-modules-bin_1.7.0-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpixman-1-0_0.46.4-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpython3-stdlib_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpcre2-16-0_10.48-3.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libnl-route-3-200_3.12.0-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpython3-dev_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpcre2-32-0_10.48-3.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libnghttp3-9_1.17.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libnghttp2-14_1.70.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libopus0_1.6.1-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpulse0_17.0+dfsg1-3_amd64.deb' dpkg-name: info: moved 'libllvm22_1%3a22.1.8-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpeawkouc0/libllvm22_22.1.8-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/liblz4-dev_1.10.0-10_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libnuma1_2.0.19-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libkrb5-3_1.22.1-3_amd64.deb' dpkg-name: info: moved 'libjpeg-dev_1%3a3.1.3-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpeawkouc0/libjpeg-dev_3.1.3-4_amd64.deb' dpkg-name: info: moved 'libproc2-1_2%3a4.0.7-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpeawkouc0/libproc2-1_4.0.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libkadm5clnt-mit12_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libkdb5-10t64_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpam-runtime_1.7.0-8_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libopengl-dev_1.7.0-3+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libngtcp2-16_1.24.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libngtcp2-crypto-gnutls8_1.24.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpkgconf7_2.5.1-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libjs-jquery_3.7.1+dfsg+~3.5.33-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libngtcp2-crypto-ossl-dev_1.24.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libp11-kit-dev_0.26.5-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libmpfr6_4.2.2-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpsm2-2_11.2.185-2.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/liblcms2-2_2.19.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libp11-kit0_0.26.5-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpython3-all-dev_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libnotify4_0.8.8-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/liblzma5_5.8.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpython3.14_3.14.8-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpam-systemd_262-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libmpc3_1.3.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/liblapack3_3.12.1-8_amd64.deb' dpkg-name: info: moved 'libllvm21_1%3a21.1.8-13_amd64.deb' to '/srv/rebuilderd/tmp/tmpeawkouc0/libllvm21_21.1.8-13_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libqt5core5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/liblsan0_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpipeline1_1.5.8-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpsl-dev_0.23.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/liblerc-dev_4.2.0+ds-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpng16-16t64_1.6.59-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libmd4c0_0.5.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libncursesw6_6.6+20260608-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpython3.14-minimal_3.14.8-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libnghttp3-dev_1.17.0-1_amd64.deb' dpkg-name: info: moved 'libmagic-mgc_1%3a5.47-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpeawkouc0/libmagic-mgc_5.47-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libperl5.42_5.42.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libnl-3-200_3.12.0-2+b1_amd64.deb' dpkg-name: info: moved 'libjpeg62-turbo_1%3a3.1.3-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpeawkouc0/libjpeg62-turbo_3.1.3-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/libpango-1.0-0_1.58.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeawkouc0/liblzf1_3.6-4+b4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsframe3 amd64 2.47-6 [86.2 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libquadmath0 amd64 16.2.0-3 [148 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libstdc++-16-dev amd64 16.2.0-3 [2755 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libstdc++6 amd64 16.2.0-3 [823 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libtsan2 amd64 16.2.0-3 [2574 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libubsan1 amd64 16.2.0-3 [1136 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 librsvg2-2 amd64 2.63.2+dfsg-1 [1836 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libsdl3-0 amd64 3.4.18+ds-1 [1121 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libseccomp2 amd64 2.6.1-1+b1 [51.7 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libselinux1 amd64 3.11-2.1 [92.2 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libsndfile1 amd64 1.2.2-4+b1 [205 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-6 [402 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.21.0-2+b1 [98.6 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.30-3 [172 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.30-3 [51.7 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libtool all 2.6.2-3 [552 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libunistring-dev amd64 1.4.2-1 [651 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libvorbis0a amd64 1.3.7-3+b2 [93.2 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libvorbisenc2 amd64 1.3.7-3+b2 [76.1 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libwacom-common all 2.20.0-1 [119 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libwacom9 amd64 2.20.0-1 [26.5 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libsharpyuv-dev amd64 1.6.0-0.1 [120 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.6.0-0.1 [116 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libwebp-dev amd64 1.6.0-0.1 [488 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.6.0-0.1 [349 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libwebpdecoder3 amd64 1.6.0-0.1 [232 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.6.0-0.1 [114 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.6.0-0.1 [127 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.13-1 [903 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.13-1 [250 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1+b2 [23.9 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b2 [107 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2+b2 [122 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2+b2 [106 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2+b2 [117 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libxcb-shape0 amd64 1.17.0-2+b2 [106 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2+b2 [109 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.2-2+b2 [37.2 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libtinfo6 amd64 6.6+20260608-2 [353 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.6.5-1 [3165 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libssl3t64 amd64 3.6.5-1 [2621 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libqt5gui5t64 amd64 5.15.19+dfsg-5 [3655 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libqt5network5t64 amd64 5.15.19+dfsg-5 [703 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libqt5opengl5t64 amd64 5.15.19+dfsg-5 [149 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libqt5printsupport5t64 amd64 5.15.19+dfsg-5 [204 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libqt5sql5t64 amd64 5.15.19+dfsg-5 [123 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libqt5test5t64 amd64 5.15.19+dfsg-5 [148 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libqt5widgets5t64 amd64 5.15.19+dfsg-5 [2499 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libqt5xml5t64 amd64 5.15.19+dfsg-5 [126 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libqt5designer5 amd64 5.15.19-2 [2769 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libqt5help5 amd64 5.15.19-2 [151 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.5-1 [13.6 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 librdmacm1t64 amd64 65.0-1.1 [79.2 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.6-1 [69.7 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.6-1 [60.3 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 librav1e0.8 amd64 0.8.1-12 [970 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libsdl2-2.0-0 amd64 2.32.74+ds-1 [124 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libssm-dev amd64 1.4.0-2+b4 [15.2 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libssm2 amd64 1.4.0-2+b4 [83.8 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libsystemd-shared amd64 262-1 [2789 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libsystemd0 amd64 262-1 [512 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libudev1 amd64 262-1 [148 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.18+dfsg-1 [1053 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 libtiff-dev amd64 4.7.2-1 [532 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libtiffxx6 amd64 4.7.2-1 [190 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.18-1 [801 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libucc1 amd64 1.9.0-1 [379 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.26.1-1 [664 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libsmartcols1 amd64 2.42.4-1 [153 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libuuid1 amd64 2.42.4-1 [34.5 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.4.363.0-1 [173 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libwayland-client0 amd64 1.26.0-1 [29.4 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libwayland-cursor0 amd64 1.26.0-1 [11.8 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libwayland-egl1 amd64 1.26.0-1 [5688 B] Get:92 http://deb.debian.org/debian unstable/main amd64 libwxbase3.2-1t64 amd64 3.2.11+dfsg1-2 [1201 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libwxgtk-gl3.2-1t64 amd64 3.2.11+dfsg1-2 [88.0 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libwxgtk3.2-1t64 amd64 3.2.11+dfsg1-2 [5219 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-2+b3 [22.3 kB] Get:96 http://deb.debian.org/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.1-1+b2 [17.0 kB] Get:97 http://deb.debian.org/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.10-1+b2 [18.7 kB] Get:98 http://deb.debian.org/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.2-1+b2 [27.7 kB] Get:99 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libsvtav1enc4 amd64 4.1.0+dfsg-1 [2414 kB] Get:100 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libucx0 amd64 1.22.0-1 [1064 kB] Fetched 56.1 MB in 2s (32.9 MB/s) dpkg-name: info: moved 'libsensors-config_1%3a3.6.2-2_all.deb' to '/srv/rebuilderd/tmp/tmpy12mmdnk/libsensors-config_3.6.2-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libqt5widgets5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libvorbisenc2_1.3.7-3+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libwacom-common_2.20.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libssm-dev_1.4.0-2+b4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libwxgtk-gl3.2-1t64_3.2.11+dfsg1-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libxcb-icccm4_0.4.2-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libwxgtk3.2-1t64_3.2.11+dfsg1-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libwayland-client0_1.26.0-1_amd64.deb' dpkg-name: info: moved 'libxau6_1%3a1.0.11-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpy12mmdnk/libxau6_1.0.11-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libtiff6_4.7.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libubsan1_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libudev1_262-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libqt5opengl5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libtinfo6_6.6+20260608-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libraqm0_0.10.5-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libtcl8.6_8.6.18+dfsg-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libqt5help5_5.15.19-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libqt5network5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libsharpyuv-dev_1.6.0-0.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libwebp7_1.6.0-0.1_amd64.deb' dpkg-name: info: moved 'libsensors5_1%3a3.6.2-2+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpy12mmdnk/libsensors5_3.6.2-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libssh2-1-dev_1.11.1-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libsasl2-modules-db_2.1.28+dfsg1-11_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libtiffxx6_4.7.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libsqlite3-0_3.53.4-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libxcb-randr0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libtiff-dev_4.7.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/librav1e0.8_0.8.1-12_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libxcb-shape0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libxcb-keysyms1_0.4.1-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libqt5test5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libxcb-glx0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libtsan2_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/librtmp1_2.6-1_amd64.deb' dpkg-name: info: moved 'libxau-dev_1%3a1.0.11-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpy12mmdnk/libxau-dev_1.0.11-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libwebpmux3_1.6.0-0.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libucc1_1.9.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libstdc++6_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libxcb-render-util0_0.3.10-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libxcb-render0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libtasn1-6_4.21.0-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libsharpyuv0_1.6.0-0.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libwacom9_2.20.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libwxbase3.2-1t64_3.2.11+dfsg1-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libsystemd-shared_262-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libssl-dev_3.6.5-1_amd64.deb' dpkg-name: info: moved 'libx11-6_2%3a1.8.13-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpy12mmdnk/libx11-6_1.8.13-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libssl3t64_3.6.5-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libsystemd0_262-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libseccomp2_2.6.1-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libtasn1-6-dev_4.21.0-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libunbound8_1.26.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libwebpdecoder3_1.6.0-0.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libuuid1_2.42.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libquadmath0_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libsframe3_2.47-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libsz2_1.1.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/librsvg2-2_2.63.2+dfsg-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libsndfile1_1.2.2-4+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libsmartcols1_2.42.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libxcb-sync1_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libssh2-1t64_1.11.1-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libselinux1_3.11-2.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libunistring-dev_1.4.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libthai-data_0.1.30-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libsdl3-0_3.4.18+ds-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libwebpdemux2_1.6.0-0.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libxcb-dri3-0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libqt5printsupport5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libqt5xml5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libssm2_1.4.0-2+b4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libqt5gui5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: info: moved 'libx11-dev_2%3a1.8.13-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpy12mmdnk/libx11-dev_1.8.13-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libxcb-shm0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libqt5designer5_5.15.19-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libvorbis0a_1.3.7-3+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libwebp-dev_1.6.0-0.1_amd64.deb' dpkg-name: info: moved 'libx11-xcb1_2%3a1.8.13-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpy12mmdnk/libx11-xcb1_1.8.13-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/librdmacm1t64_65.0-1.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libwayland-egl1_1.26.0-1_amd64.deb' dpkg-name: info: moved 'libsm6_2%3a1.2.6-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpy12mmdnk/libsm6_1.2.6-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libunistring5_1.4.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libuchardet0_0.0.8-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libwayland-cursor0_1.26.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/librtmp-dev_2.6-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libvulkan1_1.4.363.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libucx0_1.22.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libsdl2-2.0-0_2.32.74+ds-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libsasl2-2_2.1.28+dfsg1-11_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libsvtav1enc4_4.1.0+dfsg-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libreadline8t64_8.3-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libtk8.6_8.6.18-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libxcb-present0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libthai0_0.1.30-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libstdc++-16-dev_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libqt5sql5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libxcb-image0_0.4.0-2+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy12mmdnk/libtool_2.6.2-3_all.deb' dpkg-name: info: moved 'libx11-data_2%3a1.8.13-1_all.deb' to '/srv/rebuilderd/tmp/tmpy12mmdnk/libx11-data_1.8.13-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.2.0-4+b1 [317 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.3-2+b1 [228 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 7.20260623 [6996 B] Get:5 http://deb.debian.org/debian unstable/main amd64 python3-flexcache all 0.3-3 [13.7 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 python3-flexparser all 0.4-2 [43.1 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.62.1-7+b1 [1479 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-3 [88.9 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 python3-h5py all 3.16.0-7 [15.1 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 python3-h5py-serial amd64 3.16.0-7 [1057 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 python3-hatchling all 1.30.1-2 [47.9 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-2 [8184 B] Get:13 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.5.1-1 [65.4 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libze1 amd64 1.32.0-1 [648 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b2 [109 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libxcb-xinerama0 amd64 1.17.0-2+b2 [105 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libxcb-xinput0 amd64 1.17.0-2+b2 [130 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libxcb-xkb1 amd64 1.17.0-2+b2 [130 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b2 [181 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libxcomposite1 amd64 1:0.4.6-1+b2 [16.6 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libxcursor1 amd64 1:1.2.3-1+b2 [40.3 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libxdamage1 amd64 1:1.1.7-1+b1 [16.3 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-2+b1 [44.0 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libxfixes3 amd64 1:6.0.0-2+b5 [20.3 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.3-1 [86.4 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libxinerama1 amd64 2:1.1.4-3+b5 [16.0 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libxkbcommon-x11-0 amd64 1.13.1-1 [21.0 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libxkbcommon0 amd64 1.13.1-1 [148 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1+b3 [14.1 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libxrandr2 amd64 2:1.5.4-1+b4 [36.5 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libxres1 amd64 2:1.2.1-2 [17.9 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3.3-1+b2 [11.2 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.45-0.1 [158 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libxtst6 amd64 2:1.2.5-1+b2 [26.2 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-2+b1 [20.2 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-4 [371 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libzstd1 amd64 1.5.7+dfsg-4 [304 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 6.1.3-1 [1527 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 make amd64 4.4.1-3 [463 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 mawk amd64 1.3.4.20260302-2 [145 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 mesa-libgallium amd64 26.2.4-1 [11.8 MB] Get:52 http://deb.debian.org/debian unstable/main amd64 ncurses-base all 6.6+20260608-2 [276 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 ncurses-bin amd64 6.6+20260608-2 [445 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 netbase all 6.6 [10.3 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.2-1+b1 [1321 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.4-1+b1 [42.8 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.6.5-1 [1554 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 openssl-provider-legacy amd64 3.6.5-1 [329 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 patch amd64 2.8-2 [134 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 pci.ids all 0.0~2026.09.23-1 [287 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 perl amd64 5.42.3-1 [266 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 perl-base amd64 5.42.3-1 [1878 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 2.5.1-4 [33.6 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.7-1 [989 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 pybind11-dev all 3.1.0-2 [261 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.29.1-1 [111 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 pymol-data all 3.1.0+dfsg-1 [1430 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 python3-attr all 26.1.0-1 [72.2 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-4 [13.7 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.88+dfsg-2+b1 [1619 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.5.1-1 [85.5 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2026.7.22+ds-1 [9928 B] Get:76 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.7-2+b1 [190 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-3 [9112 B] Get:78 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-5 [78.7 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.3.1-1 [33.3 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 python3-editables all 0.6-1 [17.9 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 python3-hdf5plugin all 7.1.0-2 [34.4 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.20-1 [45.8 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 2.1.0-2 [7540 B] Get:84 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 python3-legacy-cgi all 2.6.4-3 [16.9 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.5+dfsg-1+b1 [26.1 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.14.7-3 [984 B] Get:89 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.14.7-3 [1008 B] Get:90 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.14.7-3 [26.7 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libxcb-util1 amd64 0.4.1-1+b2 [23.8 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libxxhash-dev amd64 0.8.3-2+b2 [80.6 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libxxhash0 amd64 0.8.3-2+b2 [27.1 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1.1 [8644 kB] Get:96 http://deb.debian.org/debian unstable/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get:97 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 libyuv0 amd64 0.0.1971.20260904-2 [187 kB] Get:98 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 linux-libc-dev all 7.2.9-1 [2012 kB] Get:99 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 python-matplotlib-data all 3.10.9+dfsg1-1 [2734 kB] Get:100 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 python3-installer all 1.0.1+dfsg1-3 [19.7 kB] Fetched 52.0 MB in 3s (19.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-flexparser_0.4-2_all.deb' dpkg-name: info: moved 'libxrandr2_2%3a1.5.4-1+b4_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/libxrandr2_1.5.4-1+b4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/openssl-provider-legacy_3.6.5-1_amd64.deb' dpkg-name: info: moved 'libxxf86vm1_1%3a1.1.4-2+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/libxxf86vm1_1.1.4-2+b1_amd64.deb' dpkg-name: info: moved 'libxrender1_1%3a0.9.12-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/libxrender1_0.9.12-1+b2_amd64.deb' dpkg-name: info: moved 'libxext6_2%3a1.3.4-1+b4_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/libxext6_1.3.4-1+b4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-autocommand_2.2.2-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-dateutil_2.9.0-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/ncurses-base_6.6+20260608-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-lz4_4.4.5+dfsg-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-contourpy_1.3.3-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-lxml_6.1.3-1_amd64.deb' dpkg-name: info: moved 'procps_2%3a4.0.7-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/procps_4.0.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/patch_2.8-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxkbcommon-x11-0_1.13.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/pkgconf-bin_2.5.1-4_amd64.deb' dpkg-name: info: moved 'libxi6_2%3a1.8.3-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/libxi6_1.8.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-hatchling_1.30.1-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-all-dev_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxcb-xinerama0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxcb-xfixes0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-iniconfig_2.1.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxcb-xinput0_1.17.0-2+b2_amd64.deb' dpkg-name: info: moved 'libxtst6_2%3a1.2.5-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/libxtst6_1.2.5-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/perl-base_5.42.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libyuv0_0.0.1971.20260904-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libzopfli1_1.0.3-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/ncurses-bin_6.6+20260608-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-jaraco.functools_4.1.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-legacy-cgi_2.6.4-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-biopython_1.88+dfsg-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libze1_1.32.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python-matplotlib-data_3.10.9+dfsg1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/po-debconf_1.0.22_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-installer_1.0.1+dfsg1-3_all.deb' dpkg-name: info: moved 'libxss1_1%3a1.2.3-1+b4_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/libxss1_1.2.3-1+b4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxcb-util1_0.4.1-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/perl-modules-5.42_5.42.3-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libz3-4_4.13.3-1.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-flexcache_0.3-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-charset-normalizer_3.4.7-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/pci.ids_0.0~2026.09.23-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxft2_2.3.6-1+b5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-freetype_2.5.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/make_4.4.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/m4_1.4.21-1_amd64.deb' dpkg-name: info: moved 'libxcursor1_1%3a1.2.3-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/libxcursor1_1.2.3-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxcb1_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-cycler_0.12.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxkbcommon0_1.13.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/perl_5.42.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/mawk_1.3.4.20260302-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxxhash0_0.8.3-2+b2_amd64.deb' dpkg-name: info: moved 'libxcomposite1_1%3a0.4.6-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/libxcomposite1_0.4.6-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-all_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/media-types_14.0.0_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-certifi_2026.7.22+ds-1_all.deb' dpkg-name: info: moved 'libxfixes3_1%3a6.0.0-2+b5_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/libxfixes3_6.0.0-2+b5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/nettle-dev_3.10.2-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-hdf5plugin_7.1.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxml2-16_2.15.4+dfsg-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-kiwisolver_1.5.1-1_amd64.deb' dpkg-name: info: moved 'libxinerama1_2%3a1.1.4-3+b5_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/libxinerama1_1.1.4-3+b5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libyaml-0-2_0.2.5-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-jaraco.context_6.0.1-2_all.deb' dpkg-name: info: moved 'libxdmcp-dev_1%3a1.1.5-2+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/libxdmcp-dev_1.1.5-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/openssl_3.6.5-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/ocl-icd-libopencl1_2.3.4-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/linux-libc-dev_7.2.9-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-build_1.5.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-brotli_1.2.0-4+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libzstd1_1.5.7+dfsg-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/netbase_6.6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-chardet_5.2.0+dfsg-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-fonttools_4.62.1-7+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxcb1-dev_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxnvctrl0_535.171.04-1+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libzstd-dev_1.5.7+dfsg-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-cairo_1.29.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/pymol-data_3.1.0+dfsg-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxslt1.1_1.1.45-0.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/pybuild-plugin-pyproject_7.20260623_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/pkgconf_2.5.1-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-decorator_5.3.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxcb-xkb1_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/mesa-libgallium_26.2.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-attr_26.1.0-1_all.deb' dpkg-name: info: moved 'libxres1_2%3a1.2.1-2_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/libxres1_1.2.1-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-h5py-serial_3.16.0-7_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-idna_3.20-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/pybind11-dev_3.1.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxxhash-dev_0.8.3-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/man-db_2.13.1-1_amd64.deb' dpkg-name: info: moved 'libxdmcp6_1%3a1.1.5-2+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/libxdmcp6_1.1.5-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/libxshmfence1_1.3.3-1+b2_amd64.deb' dpkg-name: info: moved 'libxdamage1_1%3a1.1.7-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpac_88a2q/libxdamage1_1.1.7-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-h5py_3.16.0-7_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-dev_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpac_88a2q/python3-editables_0.6-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 python3-pycbf amd64 0.9.7+dfsg1-5.1+b3 [174 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 sfftw-dev amd64 2.1.5-8 [295 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 sfftw2 amd64 2.1.5-8 [255 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 11.1.0-3 [74.7 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.4.1-4 [448 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 python3-natsort all 8.4.0-2 [39.0 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.4.6+ds-5 [5139 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.4.6+ds-5 [137 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 python3-nxmx all 0.0.7-1 [16.7 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 12.3.0-1+b1 [555 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 12.3.0-1+b1 [83.6 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.11.9-1 [19.7 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.20.0+dfsg-2 [850 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 python3-pymol amd64 3.1.0+dfsg-1+b4 [4035 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 python3-opengl all 3.1.10+dfsg-1 [624 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.3.3-1 [168 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 python3-pyqt5 amd64 5.15.11+dfsg-7 [2553 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 python3-pyqt5.qtopengl amd64 5.15.11+dfsg-7 [210 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 python3-pyqt5.sip amd64 12.19.0-1+b1 [65.4 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 9.1.1-1 [280 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 python3-mrcfile all 1.5.4-4 [121 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 python3-msgpack amd64 1.2.1-1 [87.8 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 python3-ordered-set all 4.1.0-1 [9628 B] Get:24 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 26.2-3 [84.3 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 python3-pathspec all 1.1.1-3 [38.3 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 python3-pint all 0.26.1-1 [247 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-2 [27.2 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 python3-procrunner all 2.3.3-2 [13.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 python3-psutil amd64 7.2.2-1 [153 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.3.3-1 [12.9 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 5.0.0-4 [823 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-4 [10.1 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.16.0-5 [95.2 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.8.0-2 [125 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-2 [10.2 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 python3-zopfli amd64 0.4.3-2 [10.8 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.14.7-3 [25.3 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.14.7-3 [8472 B] Get:39 http://deb.debian.org/debian unstable/main amd64 python3.14 amd64 3.14.8-1 [874 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 python3.14-dev amd64 3.14.8-1 [508 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 python3.14-minimal amd64 3.14.8-1 [2715 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 python3.14-tk amd64 3.14.8-1 [108 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.3-1+b1 [138 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-4 [74.8 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.34.2-1 [77.6 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 rsync amd64 3.5.1+ds1-1 [511 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.17.1-5+b1 [16.0 MB] Get:48 http://deb.debian.org/debian unstable/main amd64 scons all 4.10.1+dfsg-2 [564 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 sed amd64 4.9-3 [331 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 84.0.0-2 [560 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 python3-six all 1.17.0-3 [15.3 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.1.0+dfsg-4 [917 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 systemd amd64 262-1 [3477 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 systemd-sysv amd64 262-1 [41.6 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 sysvinit-utils amd64 3.18-1 [29.7 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 tar amd64 1.35+dfsg-6 [825 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 python3-tqdm all 4.70.1-1 [91.3 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 python3-trove-classifiers all 2026.9.21.13-1 [11.0 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 tzdata all 2026e-1 [262 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.18.1+dfsg1-2 [32.3 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 python3-uharfbuzz amd64 0.53.3-1+b1 [219 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 unicode-data all 17.0.0-2 [9354 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 util-linux amd64 2.42.4-1 [1254 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.47.0-2 [27.0 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 python3-wxgtk4.0 amd64 4.2.5+dfsg-3 [7472 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 xkb-data all 2.48-1 [841 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.21 [19.0 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.12.1-1 [23.9 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2025.1-1 [605 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.6.0-1 [93.5 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 xz-utils amd64 5.8.4-1 [761 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.2-3 [90.9 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Get:81 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 python3-matplotlib amd64 3.10.9+dfsg1-1+b1 [22.6 MB] Get:82 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 python3-pip all 26.1.2+dfsg-1 [1402 kB] Get:83 http://snapshot.debian.org/archive/debian/20261007T202437Z unstable/main amd64 python3-sympy all 1.14.0-5 [4227 kB] Fetched 98.0 MB in 8s (12.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-pil_12.3.0-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-opengl_3.1.10+dfsg-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/sensible-utils_0.0.26_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/xkb-data_2.48-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/xtrans-dev_1.6.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-msgpack_1.2.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-scipy_1.17.1-5+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-matplotlib_3.10.9+dfsg1-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/util-linux_2.42.4-1_amd64.deb' dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpgngpfizx/zlib1g_1.3.dfsg+really1.3.2-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-procrunner_2.3.3-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/scons_4.10.1+dfsg-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-pyqt5_5.15.11+dfsg-7_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-pyproject-hooks_1.3.3-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-pygments_2.20.0+dfsg-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-sympy_1.14.0-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-zipp_3.23.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-platformdirs_4.11.9-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-pluggy_1.6.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-trove-classifiers_2026.9.21.13-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/readline-common_8.3-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-more-itertools_11.1.0-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-pyqt5.sip_12.19.0-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/shared-mime-info_2.4-5+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-requests_2.34.2-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-mpmath_1.4.1-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-minimal_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-tk_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-psutil_7.2.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/tar_1.35+dfsg-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-typing-extensions_4.16.0-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/xml-core_0.21_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/w3c-sgml-lib_1.3-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3.14_3.14.8-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-natsort_8.4.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-setuptools_84.0.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-packaging_26.2-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/systemd_262-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-pymol_3.1.0+dfsg-1+b4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/sfftw-dev_2.1.5-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-pil.imagetk_12.3.0-1+b1_amd64.deb' dpkg-name: info: moved 'x11-common_1%3a7.7+26_all.deb' to '/srv/rebuilderd/tmp/tmpgngpfizx/x11-common_7.7+26_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-wxgtk4.0_4.2.5+dfsg-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-pytest_9.1.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-ufolib2_0.18.1+dfsg1-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3.14-minimal_3.14.8-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/sfftw2_2.1.5-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/xz-utils_5.8.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-pyparsing_3.3.3-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-pathspec_1.1.1-3_all.deb' dpkg-name: info: moved 'xorg-sgml-doctools_1%3a1.12.1-1_all.deb' to '/srv/rebuilderd/tmp/tmpgngpfizx/xorg-sgml-doctools_1.12.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-pint_0.26.1-1_all.deb' dpkg-name: info: moved 'python3-numpy_1%3a2.4.6+ds-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpgngpfizx/python3-numpy_2.4.6+ds-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-pycbf_0.9.7+dfsg1-5.1+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-reportlab_5.0.0-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-pip_26.1.2+dfsg-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3.14-tk_3.14.8-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-six_1.17.0-3_all.deb' dpkg-name: info: moved 'python3-numpy-dev_1%3a2.4.6+ds-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpgngpfizx/python3-numpy-dev_2.4.6+ds-5_amd64.deb' dpkg-name: info: moved 'xfonts-encodings_1%3a1.0.4-2.2_all.deb' to '/srv/rebuilderd/tmp/tmpgngpfizx/xfonts-encodings_1.0.4-2.2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-tqdm_4.70.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3.14-dev_3.14.8-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-rlpycairo_0.3.0-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/sed_4.9-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/x11proto-dev_2025.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-uharfbuzz_0.53.3-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-yaml_6.0.3-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/unicode-data_17.0.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-ordered-set_4.1.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-mrcfile_1.5.4-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/rsync_3.5.1+ds1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/sphinx-rtd-theme-common_3.1.0+dfsg-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-zopfli_0.4.3-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-wheel_0.47.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-pyqt5.qtopengl_5.15.11+dfsg-7_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-nxmx_0.0.7-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/sgml-base_1.31+nmu1_all.deb' dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpgngpfizx/zlib1g-dev_1.3.dfsg+really1.3.2-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/systemd-sysv_262-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/tzdata_2026e-1_all.deb' dpkg-name: info: moved 'xfonts-utils_1%3a7.7+7_amd64.deb' to '/srv/rebuilderd/tmp/tmpgngpfizx/xfonts-utils_7.7+7_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/python3-urllib3_2.8.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgngpfizx/sysvinit-utils_3.18-1_amd64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmprgf_tcjq/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.Jr34TRgn1m as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.Jr34TRgn1m 127.0.0.1 - - [14/Oct/2026 10:30:53] code 404, message File not found 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:40385 ./ InRelease 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:40385 ./ Release [462 B] 127.0.0.1 - - [14/Oct/2026 10:30:53] code 404, message File not found 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:40385 ./ Release.gpg 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:40385 ./ Packages [851 kB] Fetched 852 kB in 0s (39.9 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./gcc-16-base_16.2.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./libc-gconv-modules-extra_2.43-7_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./libc6_2.43-7_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./libgcc-s1_16.2.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./mawk_1.3.4.20260302-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./base-files_14.2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./libtinfo6_6.6%2b20260608-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./debianutils_5.24_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./bash_5.3-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./libacl1_2.4.0-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./libattr1_2.6.0-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:53] "GET /./libgmp10_6.3.0%2bdfsg-5%2bb2_amd64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [14/Oct/2026 10:30:54] "GET /./libsmartcols1_2.42.4-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:54] "GET /./libudev1_262-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:54] "GET /./libuuid1_2.42.4-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:54] "GET /./util-linux_2.42.4-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:54] "GET /./libdebconfclient0_0.283_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:54] "GET /./base-passwd_3.6.8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:54] "GET /./init-system-helpers_1.69%2bnmu3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:54] "GET /./libc-bin_2.43-7_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:54] "GET /./ncurses-base_6.6%2b20260608-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:30:54] "GET /./sysvinit-utils_3.18-1_amd64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.Jr34TRgn1m 127.0.0.1 - - [14/Oct/2026 10:30:55] code 404, message File not found 127.0.0.1 - - [14/Oct/2026 10:30:55] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:40385 ./ InRelease 127.0.0.1 - - [14/Oct/2026 10:30:55] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:40385 ./ Release 127.0.0.1 - - [14/Oct/2026 10:30:55] code 404, message File not found 127.0.0.1 - - [14/Oct/2026 10:30:55] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:40385 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.Jr34TRgn1m usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [14/Oct/2026 10:34:03] "GET /./libsystemd-shared_262-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:34:03] "GET /./systemd_262-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:34:03] "GET /./systemd-sysv_262-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:34:03] "GET /./fonts-lato_2.015-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:34:03] "GET /./libexpat1_2.9.0-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:34:03] "GET /./libpython3.14-minimal_3.14.8-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:34:03] "GET /./python3.14-minimal_3.14.8-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:34:03] "GET /./python3-minimal_3.14.7-3_amd64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [14/Oct/2026 10:34:07] "GET /./python3-wxgtk4.0_4.2.5%2bdfsg-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:34:07] "GET /./python3-pip_26.1.2%2bdfsg-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:34:07] "GET /./libclipper2_2.1.20201109-2%2bb4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:34:07] "GET /./python3-natsort_8.4.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:34:07] "GET /./python3-yaml_6.0.3-1%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:34:07] "GET /./libfftw3-dev_3.3.11-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:34:08] "GET /./sfftw-dev_2.1.5-8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:34:08] "GET /./libclipper-dev_2.1.20201109-2%2bb4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Oct/2026 10:34:08] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmprgf_tcjq/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.Jr34TRgn1m Reading package lists... Building dependency tree... Reading state information... libann-cctbx0 is already the newest version (1.1.2+doc-9+b1). libann-cctbx0 set to manually installed. libasound2-data is already the newest version (1.2.16.1-2). libasound2-data set to manually installed. dpkg is already the newest version (1.23.11). gettext is already the newest version (1.0-5). gettext set to manually installed. libann-cctbx-dev is already the newest version (1.1.2+doc-9+b1). libann-cctbx-dev set to manually installed. libabsl20260526 is already the newest version (20260526.0-2+b1). libabsl20260526 set to manually installed. cpp-16 is already the newest version (16.2.0-3). cpp-16 set to manually installed. fonts-lyx is already the newest version (2.5.3-1). fonts-lyx set to manually installed. hostname is already the newest version (3.25). debhelper is already the newest version (14.5). debhelper set to manually installed. libaom3 is already the newest version (3.14.1-1). libaom3 set to manually installed. g++-16 is already the newest version (16.2.0-3). g++-16 set to manually installed. libapparmor1 is already the newest version (4.1.8-2). libapparmor1 set to manually installed. dbus-session-bus-common is already the newest version (1.16.2-8). dbus-session-bus-common set to manually installed. dbus is already the newest version (1.16.2-8). dbus set to manually installed. fftw-dev is already the newest version (2.1.5-8). fftw-dev set to manually installed. bsdextrautils is already the newest version (2.42.4-1). bsdextrautils set to manually installed. libantlr3c-dev is already the newest version (3.4+dfsg-4+b3). libantlr3c-dev set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. adwaita-icon-theme is already the newest version (51.0-1). adwaita-icon-theme set to manually installed. coreutils is already the newest version (9.10-1). bubblewrap is already the newest version (0.13.0-1). bubblewrap set to manually installed. gzip is already the newest version (1.14-1). libantlr3c-3.4-0 is already the newest version (3.4+dfsg-4+b3). libantlr3c-3.4-0 set to manually installed. debianutils is already the newest version (5.24). glycin-loaders is already the newest version (2.2.1+ds-2). glycin-loaders set to manually installed. dwz is already the newest version (0.17-1). dwz set to manually installed. libacl1 is already the newest version (2.4.0-1). base-passwd is already the newest version (3.6.8). g++ is already the newest version (4:16.1.0-3). g++ set to manually installed. dh-python is already the newest version (7.20260623). dh-python set to manually installed. autotools-dev is already the newest version (20240727.1+nmu1). autotools-dev set to manually installed. fonts-lato is already the newest version (2.015-1). fonts-lato set to manually installed. fonts-font-awesome is already the newest version (7.3.0+dfsg-1). fonts-font-awesome set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. cpp-x86-64-linux-gnu is already the newest version (4:16.1.0-3). cpp-x86-64-linux-gnu set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.1-1). dh-strip-nondeterminism set to manually installed. binutils-common is already the newest version (2.47-6). binutils-common set to manually installed. ibverbs-providers is already the newest version (65.0-1.1). ibverbs-providers set to manually installed. grep is already the newest version (3.12-1). dash is already the newest version (0.5.12-12). fftw2 is already the newest version (2.1.5-8). fftw2 set to manually installed. gcc-16 is already the newest version (16.2.0-3). gcc-16 set to manually installed. debconf is already the newest version (1.5.92). comerr-dev is already the newest version (2.1-1.47.4-1+b2). comerr-dev set to manually installed. glycin-thumbnailers is already the newest version (2.2.1+ds-2). glycin-thumbnailers set to manually installed. autopoint is already the newest version (1.0-5). autopoint set to manually installed. fontconfig is already the newest version (2.17.1-5). fontconfig set to manually installed. libamdhip64-6 is already the newest version (6.4.3-5). libamdhip64-6 set to manually installed. hicolor-icon-theme is already the newest version (0.18-2). hicolor-icon-theme set to manually installed. fontconfig-config is already the newest version (2.17.1-5). fontconfig-config set to manually installed. libaec-dev is already the newest version (1.1.7-1). libaec-dev set to manually installed. file is already the newest version (1:5.47-4). file set to manually installed. libamd-comgr3 is already the newest version (7.0.2+dfsg-3). libamd-comgr3 set to manually installed. fonts-roboto-slab is already the newest version (2.002+20231012+ds-1). fonts-roboto-slab set to manually installed. gcc is already the newest version (4:16.1.0-3). gcc set to manually installed. g++-16-x86-64-linux-gnu is already the newest version (16.2.0-3). g++-16-x86-64-linux-gnu set to manually installed. libasan8 is already the newest version (16.2.0-3). libasan8 set to manually installed. libasound2t64 is already the newest version (1.2.16.1-2). libasound2t64 set to manually installed. dpkg-dev is already the newest version (1.23.11). dpkg-dev set to manually installed. krb5-multidev is already the newest version (1.22.1-3). krb5-multidev set to manually installed. hdf5-helpers is already the newest version (2.2.0+repack-5). hdf5-helpers set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. cpp-16-x86-64-linux-gnu is already the newest version (16.2.0-3). cpp-16-x86-64-linux-gnu set to manually installed. fonts-dejavu-extra is already the newest version (2.37-9). fonts-dejavu-extra set to manually installed. dh-exec is already the newest version (0.31). dh-exec set to manually installed. jq is already the newest version (1.8.2-1). jq set to manually installed. gettext-base is already the newest version (1.0-5). gettext-base set to manually installed. automake is already the newest version (1:1.19-2). automake set to manually installed. g++-x86-64-linux-gnu is already the newest version (4:16.1.0-3). g++-x86-64-linux-gnu set to manually installed. binutils-x86-64-linux-gnu is already the newest version (2.47-6). binutils-x86-64-linux-gnu set to manually installed. gcc-16-base is already the newest version (16.2.0-3). dbus-user-session is already the newest version (1.16.2-8). dbus-user-session set to manually installed. groff-base is already the newest version (1.24.2-2). groff-base set to manually installed. autoconf is already the newest version (2.73-2). autoconf set to manually installed. dconf-service is already the newest version (51.0-2). dconf-service set to manually installed. dconf-gsettings-backend is already the newest version (51.0-2). dconf-gsettings-backend set to manually installed. cpp is already the newest version (4:16.1.0-3). cpp set to manually installed. fonts-dejavu-core is already the newest version (2.37-9). fonts-dejavu-core set to manually installed. diffutils is already the newest version (1:3.12-1). architecture-properties is already the newest version (0.2.6+b2). architecture-properties set to manually installed. at-spi2-common is already the newest version (2.62.0-2). at-spi2-common set to manually installed. bash is already the newest version (5.3-4). fonts-dejavu-mono is already the newest version (2.37-9). fonts-dejavu-mono set to manually installed. gcc-x86-64-linux-gnu is already the newest version (4:16.1.0-3). gcc-x86-64-linux-gnu set to manually installed. bzip2 is already the newest version (1.0.8-6+b2). bzip2 set to manually installed. dbus-system-bus-common is already the newest version (1.16.2-8). dbus-system-bus-common set to manually installed. findutils is already the newest version (4.11.0-3). ca-certificates is already the newest version (20260816). ca-certificates set to manually installed. binutils is already the newest version (2.47-6). binutils set to manually installed. dbus-daemon is already the newest version (1.16.2-8). dbus-daemon set to manually installed. fonts-urw-base35 is already the newest version (20200910-9). fonts-urw-base35 set to manually installed. gtk-update-icon-cache is already the newest version (4.24.1+ds-1). gtk-update-icon-cache set to manually installed. dbus-bin is already the newest version (1.16.2-8). dbus-bin set to manually installed. gcc-16-x86-64-linux-gnu is already the newest version (16.2.0-3). gcc-16-x86-64-linux-gnu set to manually installed. libaec0 is already the newest version (1.1.7-1). libaec0 set to manually installed. init-system-helpers is already the newest version (1.69+nmu3). fonts-font-awesome-legacy is already the newest version (6-4). fonts-font-awesome-legacy set to manually installed. base-files is already the newest version (14.2). dh-autoreconf is already the newest version (23). dh-autoreconf set to manually installed. libc6 is already the newest version (2.43-7). libboost-numpy1.92.0 is already the newest version (1.92.0-3). libboost-numpy1.92.0 set to manually installed. libcap-ng0 is already the newest version (0.9.6-1). libboost-serialization1.92-dev is already the newest version (1.92.0-3). libboost-serialization1.92-dev set to manually installed. libboost-atomic1.92.0 is already the newest version (1.92.0-3). libboost-atomic1.92.0 set to manually installed. libclipper2 is already the newest version (2.1.20201109-2+b4). libclipper2 set to manually installed. libblas3 is already the newest version (3.12.1-8). libblas3 set to manually installed. libattr1 is already the newest version (1:2.6.0-1). libboost-python1.92-dev is already the newest version (1.92.0-3). libboost-python1.92-dev set to manually installed. libbsd0 is already the newest version (0.12.2-3). libbsd0 set to manually installed. libboost-date-time1.92-dev is already the newest version (1.92.0-3). libboost-date-time1.92-dev set to manually installed. libboost-math1.92-dev is already the newest version (1.92.0-3). libboost-math1.92-dev set to manually installed. libavahi-common3 is already the newest version (0.8-18). libavahi-common3 set to manually installed. libboost1.92-dev is already the newest version (1.92.0-3). libboost1.92-dev set to manually installed. libboost-random1.92-dev is already the newest version (1.92.0-3). libboost-random1.92-dev set to manually installed. libbrotli-dev is already the newest version (1.2.0-4+b1). libbrotli-dev set to manually installed. libclang-common-21-dev is already the newest version (1:21.1.8-13). libclang-common-21-dev set to manually installed. libcap2 is already the newest version (1:2.78-1+b1). libcap2 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-11+b1). libboost-serialization1.92.0 is already the newest version (1.92.0-3). libboost-serialization1.92.0 set to manually installed. libboost-numpy1.92-dev is already the newest version (1.92.0-3). libboost-numpy1.92-dev set to manually installed. libcbf1t64 is already the newest version (0.9.7+dfsg1-5.1+b3). libcbf1t64 set to manually installed. libcairo2 is already the newest version (1.18.4-3+b1). libcairo2 set to manually installed. libdebconfclient0 is already the newest version (0.283). libbrotli1 is already the newest version (1.2.0-4+b1). libbrotli1 set to manually installed. libboost-thread-dev is already the newest version (1.92.0.1). libboost-thread-dev set to manually installed. libccp4-dev is already the newest version (8.0.0-5+b1). libccp4-dev set to manually installed. libc-dev-bin is already the newest version (2.43-7). libc-dev-bin set to manually installed. libcups2t64 is already the newest version (2.4.18-1). libcups2t64 set to manually installed. libccp4-data is already the newest version (8.0.0-5). libccp4-data set to manually installed. libcolord2 is already the newest version 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(1.24.0-1). libngtcp2-dev set to manually installed. libpam0g is already the newest version (1.7.0-8). libmount1 is already the newest version (2.42.4-1). libmpg123-0t64 is already the newest version (1.33.7-1). libmpg123-0t64 set to manually installed. libpcre2-8-0 is already the newest version (10.48-3.1). libopenmpi40 is already the newest version (6.0.0~rc2-2). libopenmpi40 set to manually installed. libmtdev1t64 is already the newest version (1.1.7-1+b2). libmtdev1t64 set to manually installed. libqt5dbus5t64 is already the newest version (5.15.19+dfsg-5). libqt5dbus5t64 set to manually installed. libldap-dev is already the newest version (2.6.14+dfsg-2). libldap-dev set to manually installed. libopengl0 is already the newest version (1.7.0-3+b1). libopengl0 set to manually installed. libqhull-r8.0 is already the newest version (2020.2-9). libqhull-r8.0 set to manually installed. libnettle8t64 is already the newest version (3.10.2-1+b1). libnettle8t64 set to manually installed. libkeyutils1 is already the newest version (1.6.3-6+b2). libkeyutils1 set to manually installed. libpam-modules-bin is already the newest version (1.7.0-8). libpixman-1-0 is already the newest version (0.46.4-1+b2). libpixman-1-0 set to manually installed. libpython3-stdlib is already the newest version (3.14.7-3). libpython3-stdlib set to manually installed. libpcre2-16-0 is already the newest version (10.48-3.1). libpcre2-16-0 set to manually installed. libnl-route-3-200 is already the newest version (3.12.0-2+b1). libnl-route-3-200 set to manually installed. libpython3-dev is already the newest version (3.14.7-3). libpython3-dev set to manually installed. libpcre2-32-0 is already the newest version (10.48-3.1). libpcre2-32-0 set to manually installed. libnghttp3-9 is already the newest version (1.17.0-1). libnghttp3-9 set to manually installed. libnghttp2-14 is already the newest version (1.70.0-1). libnghttp2-14 set to manually installed. libopus0 is already the newest version (1.6.1-1+b1). libopus0 set to manually installed. libpulse0 is already the newest version (17.0+dfsg1-3). libpulse0 set to manually installed. libllvm21 is already the newest version (1:21.1.8-13). libllvm21 set to manually installed. liblz4-dev is already the newest version (1.10.0-10). liblz4-dev set to manually installed. libnuma1 is already the newest version (2.0.19-1+b2). libnuma1 set to manually installed. libkrb5-3 is already the newest version (1.22.1-3). libkrb5-3 set to manually installed. libkadm5clnt-mit12 is already the newest version (1.22.1-3). libkadm5clnt-mit12 set to manually installed. libkdb5-10t64 is already the newest version (1.22.1-3). libkdb5-10t64 set to manually installed. libpam-runtime is already the newest version (1.7.0-8). libopengl-dev is already the newest version (1.7.0-3+b1). libopengl-dev set to manually installed. libngtcp2-16 is already the newest version (1.24.0-1). libngtcp2-16 set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.24.0-1). libngtcp2-crypto-gnutls8 set to manually installed. libpkgconf7 is already the newest version (2.5.1-4). libpkgconf7 set to manually installed. libjs-jquery is already the newest version (3.7.1+dfsg+~3.5.33-1). libjs-jquery set to manually installed. libngtcp2-crypto-ossl-dev is already the newest version (1.24.0-1). libngtcp2-crypto-ossl-dev set to manually installed. libp11-kit-dev is already the newest version (0.26.5-1). libp11-kit-dev set to manually installed. libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. libpsm2-2 is already the newest version (11.2.185-2.1). libpsm2-2 set to manually installed. liblcms2-2 is already the newest version (2.19.1-1). liblcms2-2 set to manually installed. libp11-kit0 is already the newest version (0.26.5-1). libp11-kit0 set to manually installed. libpython3-all-dev is already the newest version (3.14.7-3). libpython3-all-dev set to manually installed. libnotify4 is already the newest version (0.8.8-1+b1). libnotify4 set to manually installed. libjpeg-dev is already the newest version (1:3.1.3-4). libjpeg-dev set to manually installed. liblzma5 is already the newest version (5.8.4-1). libpython3.14 is already the newest version (3.14.8-1). libpython3.14 set to manually installed. libpam-systemd is already the newest version (262-1). libpam-systemd set to manually installed. libmpc3 is already the newest version (1.3.1-3). libmpc3 set to manually installed. liblapack3 is already the newest version (3.12.1-8). liblapack3 set to manually installed. libnetcdf22 is already the newest version (1:4.10.1-1+b1). libnetcdf22 set to manually installed. libqt5core5t64 is already the newest version (5.15.19+dfsg-5). libqt5core5t64 set to manually installed. liblsan0 is already the newest version (16.2.0-3). liblsan0 set to manually installed. libpipeline1 is already the newest version (1.5.8-3). libpipeline1 set to manually installed. libpsl-dev is already the newest version (0.23.3-1). libpsl-dev set to manually installed. liblerc-dev is already the newest version (4.2.0+ds-1). liblerc-dev set to manually installed. libpng16-16t64 is already the newest version (1.6.59-1). libpng16-16t64 set to manually installed. libmd4c0 is already the newest version (0.5.3-1). libmd4c0 set to manually installed. libncursesw6 is already the newest version (6.6+20260608-2). libncursesw6 set to manually installed. libpython3.14-minimal is already the newest version (3.14.8-1). libpython3.14-minimal set to manually installed. libnghttp3-dev is already the newest version (1.17.0-1). libnghttp3-dev set to manually installed. libperl5.42 is already the newest version (5.42.3-1). libperl5.42 set to manually installed. libnl-3-200 is already the newest version (3.12.0-2+b1). libnl-3-200 set to manually installed. libpango-1.0-0 is already the newest version (1.58.2-1). libpango-1.0-0 set to manually installed. liblzf1 is already the newest version (3.6-4+b4). liblzf1 set to manually installed. libsensors-config is already the newest version (1:3.6.2-2). libsensors-config set to manually installed. libqt5widgets5t64 is already the newest version (5.15.19+dfsg-5). libqt5widgets5t64 set to manually installed. libxau-dev is already the newest version (1:1.0.11-1+b2). libxau-dev set to manually installed. libvorbisenc2 is already the newest version (1.3.7-3+b2). libvorbisenc2 set to manually installed. libx11-xcb1 is already the newest version (2:1.8.13-1). libx11-xcb1 set to manually installed. libwacom-common is already the newest version (2.20.0-1). libwacom-common set to manually installed. libssm-dev is already the newest version (1.4.0-2+b4). libssm-dev set to manually installed. libwxgtk-gl3.2-1t64 is already the newest version (3.2.11+dfsg1-2). libwxgtk-gl3.2-1t64 set to manually installed. libxcb-icccm4 is already the newest version (0.4.2-1+b2). libxcb-icccm4 set to manually installed. libsm6 is already the newest version (2:1.2.6-1+b2). libsm6 set to manually installed. libwxgtk3.2-1t64 is already the newest version (3.2.11+dfsg1-2). libwxgtk3.2-1t64 set to manually installed. libwayland-client0 is already the newest version (1.26.0-1). libwayland-client0 set to manually installed. libtiff6 is already the newest version (4.7.2-1). libtiff6 set to manually installed. libubsan1 is already the newest version (16.2.0-3). libubsan1 set to manually installed. libudev1 is already the newest version (262-1). libqt5opengl5t64 is already the newest version (5.15.19+dfsg-5). libqt5opengl5t64 set to manually installed. libtinfo6 is already the newest version (6.6+20260608-2). libraqm0 is already the newest version (0.10.5-1). libraqm0 set to manually installed. libtcl8.6 is already the newest version (8.6.18+dfsg-1). libtcl8.6 set to manually installed. libqt5help5 is already the newest version (5.15.19-2). libqt5help5 set to manually installed. libqt5network5t64 is already the newest version (5.15.19+dfsg-5). libqt5network5t64 set to manually installed. libsharpyuv-dev is already the newest version (1.6.0-0.1). libsharpyuv-dev set to manually installed. libwebp7 is already the newest version (1.6.0-0.1). libwebp7 set to manually installed. libssh2-1-dev is already the newest version (1.11.1-6). libssh2-1-dev set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-11). libsasl2-modules-db set to manually installed. libtiffxx6 is already the newest version (4.7.2-1). libtiffxx6 set to manually installed. libsqlite3-0 is already the newest version (3.53.4-2). libsqlite3-0 set to manually installed. libxcb-randr0 is already the newest version (1.17.0-2+b2). libxcb-randr0 set to manually installed. libtiff-dev is already the newest version (4.7.2-1). libtiff-dev set to manually installed. librav1e0.8 is already the newest version (0.8.1-12). librav1e0.8 set to manually installed. libxcb-shape0 is already the newest version (1.17.0-2+b2). libxcb-shape0 set to manually installed. libxcb-keysyms1 is already the newest version (0.4.1-1+b2). libxcb-keysyms1 set to manually installed. libqt5test5t64 is already the newest version (5.15.19+dfsg-5). libqt5test5t64 set to manually installed. libxcb-glx0 is already the newest version (1.17.0-2+b2). libxcb-glx0 set to manually installed. libtsan2 is already the newest version (16.2.0-3). libtsan2 set to manually installed. librtmp1 is already the newest version (2.6-1). librtmp1 set to manually installed. libxau6 is already the newest version (1:1.0.11-1+b2). libxau6 set to manually installed. libwebpmux3 is already the newest version (1.6.0-0.1). libwebpmux3 set to manually installed. libucc1 is already the newest version (1.9.0-1). libucc1 set to manually installed. libstdc++6 is already the newest version (16.2.0-3). libstdc++6 set to manually installed. libxcb-render-util0 is already the newest version (0.3.10-1+b2). libxcb-render-util0 set to manually installed. libxcb-render0 is already the newest version (1.17.0-2+b2). libxcb-render0 set to manually installed. libtasn1-6 is already the newest version (4.21.0-2+b1). libtasn1-6 set to manually installed. libsharpyuv0 is already the newest version (1.6.0-0.1). libsharpyuv0 set to manually installed. libwacom9 is already the newest version (2.20.0-1). libwacom9 set to manually installed. libwxbase3.2-1t64 is already the newest version (3.2.11+dfsg1-2). libwxbase3.2-1t64 set to manually installed. libsystemd-shared is already the newest version (262-1). libsystemd-shared set to manually installed. libssl-dev is already the newest version (3.6.5-1). libssl-dev set to manually installed. libssl3t64 is already the newest version (3.6.5-1). libsystemd0 is already the newest version (262-1). libseccomp2 is already the newest version (2.6.1-1+b1). libseccomp2 set to manually installed. libtasn1-6-dev is already the newest version (4.21.0-2+b1). libtasn1-6-dev set to manually installed. libsensors5 is already the newest version (1:3.6.2-2+b2). libsensors5 set to manually installed. libunbound8 is already the newest version (1.26.1-1). libunbound8 set to manually installed. libwebpdecoder3 is already the newest version (1.6.0-0.1). libwebpdecoder3 set to manually installed. libuuid1 is already the newest version (2.42.4-1). libquadmath0 is already the newest version (16.2.0-3). libquadmath0 set to manually installed. libsframe3 is already the newest version (2.47-6). libsframe3 set to manually installed. libsz2 is already the newest version (1.1.7-1). libsz2 set to manually installed. librsvg2-2 is already the newest version (2.63.2+dfsg-1). librsvg2-2 set to manually installed. libsndfile1 is already the newest version (1.2.2-4+b1). libsndfile1 set to manually installed. libsmartcols1 is already the newest version (2.42.4-1). libxcb-sync1 is already the newest version (1.17.0-2+b2). libxcb-sync1 set to manually installed. libssh2-1t64 is already the newest version (1.11.1-6). libssh2-1t64 set to manually installed. libselinux1 is already the newest version (3.11-2.1). libunistring-dev is already the newest version (1.4.2-1). libunistring-dev set to manually installed. libthai-data is already the newest version (0.1.30-3). libthai-data set to manually installed. libsdl3-0 is already the newest version (3.4.18+ds-1). libsdl3-0 set to manually installed. libx11-dev is already the newest version (2:1.8.13-1). libx11-dev set to manually installed. libwebpdemux2 is already the newest version (1.6.0-0.1). libwebpdemux2 set to manually installed. libxcb-dri3-0 is already the newest version (1.17.0-2+b2). libxcb-dri3-0 set to manually installed. libqt5printsupport5t64 is already the newest version (5.15.19+dfsg-5). libqt5printsupport5t64 set to manually installed. libqt5xml5t64 is already the newest version (5.15.19+dfsg-5). libqt5xml5t64 set to manually installed. libssm2 is already the newest version (1.4.0-2+b4). libssm2 set to manually installed. libx11-6 is already the newest version (2:1.8.13-1). libx11-6 set to manually installed. libqt5gui5t64 is already the newest version (5.15.19+dfsg-5). libqt5gui5t64 set to manually installed. libxcb-shm0 is already the newest version (1.17.0-2+b2). libxcb-shm0 set to manually installed. libx11-data is already the newest version (2:1.8.13-1). libx11-data set to manually installed. libqt5designer5 is already the newest version (5.15.19-2). libqt5designer5 set to manually installed. libvorbis0a is already the newest version (1.3.7-3+b2). libvorbis0a set to manually installed. libwebp-dev is already the newest version (1.6.0-0.1). libwebp-dev set to manually installed. librdmacm1t64 is already the newest version (65.0-1.1). librdmacm1t64 set to manually installed. libwayland-egl1 is already the newest version (1.26.0-1). libwayland-egl1 set to manually installed. libunistring5 is already the newest version (1.4.2-1). libunistring5 set to manually installed. libuchardet0 is already the newest version (0.0.8-2+b2). libuchardet0 set to manually installed. libwayland-cursor0 is already the newest version (1.26.0-1). libwayland-cursor0 set to manually installed. librtmp-dev is already the newest version (2.6-1). librtmp-dev set to manually installed. libvulkan1 is already the newest version (1.4.363.0-1). libvulkan1 set to manually installed. libucx0 is already the newest version (1.22.0-1). libucx0 set to manually installed. libsdl2-2.0-0 is already the newest version (2.32.74+ds-1). libsdl2-2.0-0 set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-11). libsasl2-2 set to manually installed. libsvtav1enc4 is already the newest version (4.1.0+dfsg-1). libsvtav1enc4 set to manually installed. libreadline8t64 is already the newest version (8.3-4). libreadline8t64 set to manually installed. libtk8.6 is already the newest version (8.6.18-1). libtk8.6 set to manually installed. libxcb-present0 is already the newest version (1.17.0-2+b2). libxcb-present0 set to manually installed. libthai0 is already the newest version (0.1.30-3). libthai0 set to manually installed. libstdc++-16-dev is already the newest version (16.2.0-3). libstdc++-16-dev set to manually installed. libqt5sql5t64 is already the newest version (5.15.19+dfsg-5). libqt5sql5t64 set to manually installed. libxcb-image0 is already the newest version (0.4.0-2+b3). libxcb-image0 set to manually installed. libtool is already the newest version (2.6.2-3). libtool set to manually installed. python3-flexparser is already the newest version (0.4-2). python3-flexparser set to manually installed. openssl-provider-legacy is already the newest version (3.6.5-1). python3-autocommand is already the newest version (2.2.2-4). python3-autocommand set to manually installed. python3-dateutil is already the newest version (2.9.0-5). python3-dateutil set to manually installed. ncurses-base is already the newest version (6.6+20260608-2). python3-lz4 is already the newest version (4.4.5+dfsg-1+b1). python3-lz4 set to manually installed. python3-contourpy is already the newest version (1.3.3-2+b1). python3-contourpy set to manually installed. python3-lxml is already the newest version (6.1.3-1). python3-lxml set to manually installed. libxdmcp-dev is already the newest version (1:1.1.5-2+b1). libxdmcp-dev set to manually installed. libxtst6 is already the newest version (2:1.2.5-1+b2). libxtst6 set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. libxkbcommon-x11-0 is already the newest version (1.13.1-1). libxkbcommon-x11-0 set to manually installed. pkgconf-bin is already the newest version (2.5.1-4). pkgconf-bin set to manually installed. python3-hatchling is already the newest version (1.30.1-2). python3-hatchling set to manually installed. python3-all-dev is already the newest version (3.14.7-3). python3-all-dev set to manually installed. libxcomposite1 is already the newest version (1:0.4.6-1+b2). libxcomposite1 set to manually installed. libxfixes3 is already the newest version (1:6.0.0-2+b5). libxfixes3 set to manually installed. libxcb-xinerama0 is already the newest version (1.17.0-2+b2). libxcb-xinerama0 set to manually installed. libxcb-xfixes0 is already the newest version (1.17.0-2+b2). libxcb-xfixes0 set to manually installed. python3-iniconfig is already the newest version (2.1.0-2). python3-iniconfig set to manually installed. libxcb-xinput0 is already the newest version (1.17.0-2+b2). libxcb-xinput0 set to manually installed. perl-base is already the newest version (5.42.3-1). libyuv0 is already the newest version (0.0.1971.20260904-2). libyuv0 set to manually installed. libzopfli1 is already the newest version (1.0.3-3). libzopfli1 set to manually installed. ncurses-bin is already the newest version (6.6+20260608-2). python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. python3-legacy-cgi is already the newest version (2.6.4-3). python3-legacy-cgi set to manually installed. python3-biopython is already the newest version (1.88+dfsg-2+b1). python3-biopython set to manually installed. libze1 is already the newest version (1.32.0-1). libze1 set to manually installed. python-matplotlib-data is already the newest version (3.10.9+dfsg1-1). python-matplotlib-data set to manually installed. po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. python3-installer is already the newest version (1.0.1+dfsg1-3). python3-installer set to manually installed. libxcb-util1 is already the newest version (0.4.1-1+b2). libxcb-util1 set to manually installed. python3 is already the newest version (3.14.7-3). python3 set to manually installed. perl-modules-5.42 is already the newest version (5.42.3-1). perl-modules-5.42 set to manually installed. libz3-4 is already the newest version (4.13.3-1.1). libz3-4 set to manually installed. python3-flexcache is already the newest version (0.3-3). python3-flexcache set to manually installed. python3-charset-normalizer is already the newest version (3.4.7-2+b1). python3-charset-normalizer set to manually installed. pci.ids is already the newest version (0.0~2026.09.23-1). pci.ids set to manually installed. libxft2 is already the newest version (2.3.6-1+b5). libxft2 set to manually installed. python3-freetype is already the newest version (2.5.1-3). python3-freetype set to manually installed. make is already the newest version (4.4.1-3). make set to manually installed. m4 is already the newest version (1.4.21-1). m4 set to manually installed. libxext6 is already the newest version (2:1.3.4-1+b4). libxext6 set to manually installed. libxcb1 is already the newest version (1.17.0-2+b2). libxcb1 set to manually installed. python3-cycler is already the newest version (0.12.1-3). python3-cycler set to manually installed. libxkbcommon0 is already the newest version (1.13.1-1). libxkbcommon0 set to manually installed. perl is already the newest version (5.42.3-1). perl set to manually installed. mawk is already the newest version (1.3.4.20260302-2). libxxf86vm1 is already the newest version (1:1.1.4-2+b1). libxxf86vm1 set to manually installed. libxxhash0 is already the newest version (0.8.3-2+b2). libxxhash0 set to manually installed. python3-all is already the newest version (3.14.7-3). python3-all set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. python3-certifi is already the newest version (2026.7.22+ds-1). python3-certifi set to manually installed. nettle-dev is already the newest version (3.10.2-1+b1). nettle-dev set to manually installed. python3-hdf5plugin is already the newest version (7.1.0-2). python3-hdf5plugin set to manually installed. libxml2-16 is already the newest version (2.15.4+dfsg-1). libxml2-16 set to manually installed. python3-kiwisolver is already the newest version (1.5.1-1). python3-kiwisolver set to manually installed. libxinerama1 is already the newest version (2:1.1.4-3+b5). libxinerama1 set to manually installed. libxi6 is already the newest version (2:1.8.3-1). libxi6 set to manually installed. libyaml-0-2 is already the newest version (0.2.5-2+b1). libyaml-0-2 set to manually installed. python3-jaraco.context is already the newest version (6.0.1-2). python3-jaraco.context set to manually installed. openssl is already the newest version (3.6.5-1). openssl set to manually installed. ocl-icd-libopencl1 is already the newest version (2.3.4-1+b1). ocl-icd-libopencl1 set to manually installed. procps is already the newest version (2:4.0.7-1). procps set to manually installed. linux-libc-dev is already the newest version (7.2.9-1). linux-libc-dev set to manually installed. python3-build is already the newest version (1.5.1-1). python3-build set to manually installed. python3-brotli is already the newest version (1.2.0-4+b1). python3-brotli set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-4). libxrender1 is already the newest version (1:0.9.12-1+b2). libxrender1 set to manually installed. netbase is already the newest version (6.6). netbase set to manually installed. python3-chardet is already the newest version (5.2.0+dfsg-2). python3-chardet set to manually installed. python3-fonttools is already the newest version (4.62.1-7+b1). python3-fonttools set to manually installed. libxcb1-dev is already the newest version (1.17.0-2+b2). libxcb1-dev set to manually installed. libxnvctrl0 is already the newest version (535.171.04-1+b3). libxnvctrl0 set to manually installed. libzstd-dev is already the newest version (1.5.7+dfsg-4). libzstd-dev set to manually installed. libxcursor1 is already the newest version (1:1.2.3-1+b2). libxcursor1 set to manually installed. python3-cairo is already the newest version (1.29.1-1). python3-cairo set to manually installed. pymol-data is already the newest version (3.1.0+dfsg-1). pymol-data set to manually installed. libxslt1.1 is already the newest version (1.1.45-0.1). libxslt1.1 set to manually installed. pybuild-plugin-pyproject is already the newest version (7.20260623). pybuild-plugin-pyproject set to manually installed. pkgconf is already the newest version (2.5.1-4). pkgconf set to manually installed. python3-decorator is already the newest version (5.3.1-1). python3-decorator set to manually installed. libxdamage1 is already the newest version (1:1.1.7-1+b1). libxdamage1 set to manually installed. libxcb-xkb1 is already the newest version (1.17.0-2+b2). libxcb-xkb1 set to manually installed. mesa-libgallium is already the newest version (26.2.4-1). mesa-libgallium set to manually installed. python3-attr is already the newest version (26.1.0-1). python3-attr set to manually installed. python3-h5py-serial is already the newest version (3.16.0-7). python3-h5py-serial set to manually installed. libxrandr2 is already the newest version (2:1.5.4-1+b4). libxrandr2 set to manually installed. python3-idna is already the newest version (3.20-1). python3-idna set to manually installed. libxss1 is already the newest version (1:1.2.3-1+b4). libxss1 set to manually installed. pybind11-dev is already the newest version (3.1.0-2). pybind11-dev set to manually installed. libxdmcp6 is already the newest version (1:1.1.5-2+b1). libxdmcp6 set to manually installed. libxxhash-dev is already the newest version (0.8.3-2+b2). libxxhash-dev set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. libxres1 is already the newest version (2:1.2.1-2). libxres1 set to manually installed. libxshmfence1 is already the newest version (1.3.3-1+b2). libxshmfence1 set to manually installed. python3-h5py is already the newest version (3.16.0-7). python3-h5py set to manually installed. python3-dev is already the newest version (3.14.7-3). python3-dev set to manually installed. python3-editables is already the newest version (0.6-1). python3-editables set to manually installed. python3-pil is already the newest version (12.3.0-1+b1). python3-pil set to manually installed. python3-opengl is already the newest version (3.1.10+dfsg-1). python3-opengl set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. xkb-data is already the newest version (2.48-1). xkb-data set to manually installed. xtrans-dev is already the newest version (1.6.0-1). xtrans-dev set to manually installed. python3-msgpack is already the newest version (1.2.1-1). python3-msgpack set to manually installed. python3-scipy is already the newest version (1.17.1-5+b1). python3-scipy set to manually installed. python3-matplotlib is already the newest version (3.10.9+dfsg1-1+b1). python3-matplotlib set to manually installed. util-linux is already the newest version (2.42.4-1). python3-numpy-dev is already the newest version (1:2.4.6+ds-5). python3-numpy-dev set to manually installed. python3-procrunner is already the newest version (2.3.3-2). python3-procrunner set to manually installed. scons is already the newest version (4.10.1+dfsg-2). scons set to manually installed. python3-pyqt5 is already the newest version (5.15.11+dfsg-7). python3-pyqt5 set to manually installed. python3-pyproject-hooks is already the newest version (1.3.3-1). python3-pyproject-hooks set to manually installed. python3-pygments is already the newest version (2.20.0+dfsg-2). python3-pygments set to manually installed. python3-sympy is already the newest version (1.14.0-5). python3-sympy set to manually installed. python3-zipp is already the newest version (3.23.0-2). python3-zipp set to manually installed. python3-platformdirs is already the newest version (4.11.9-1). python3-platformdirs set to manually installed. python3-pluggy is already the newest version (1.6.0-2). python3-pluggy set to manually installed. python3-trove-classifiers is already the newest version (2026.9.21.13-1). python3-trove-classifiers set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. python3-more-itertools is already the newest version (11.1.0-3). python3-more-itertools set to manually installed. python3-pyqt5.sip is already the newest version (12.19.0-1+b1). python3-pyqt5.sip set to manually installed. x11-common is already the newest version (1:7.7+26). x11-common set to manually installed. shared-mime-info is already the newest version (2.4-5+b3). shared-mime-info set to manually installed. python3-requests is already the newest version (2.34.2-1). python3-requests set to manually installed. python3-mpmath is already the newest version (1.4.1-4). python3-mpmath set to manually installed. python3-minimal is already the newest version (3.14.7-3). python3-minimal set to manually installed. python3-tk is already the newest version (3.14.7-3). python3-tk set to manually installed. python3-psutil is already the newest version (7.2.2-1). python3-psutil set to manually installed. tar is already the newest version (1.35+dfsg-6). python3-typing-extensions is already the newest version (4.16.0-5). python3-typing-extensions set to manually installed. xml-core is already the newest version (0.21). xml-core set to manually installed. w3c-sgml-lib is already the newest version (1.3-3). w3c-sgml-lib set to manually installed. python3.14 is already the newest version (3.14.8-1). python3.14 set to manually installed. python3-natsort is already the newest version (8.4.0-2). python3-natsort set to manually installed. xorg-sgml-doctools is already the newest version (1:1.12.1-1). xorg-sgml-doctools set to manually installed. python3-setuptools is already the newest version (84.0.0-2). python3-setuptools set to manually installed. python3-packaging is already the newest version (26.2-3). python3-packaging set to manually installed. systemd is already the newest version (262-1). systemd set to manually installed. python3-pymol is already the newest version (3.1.0+dfsg-1+b4). python3-pymol set to manually installed. sfftw-dev is already the newest version (2.1.5-8). sfftw-dev set to manually installed. python3-pil.imagetk is already the newest version (12.3.0-1+b1). python3-pil.imagetk set to manually installed. python3-wxgtk4.0 is already the newest version (4.2.5+dfsg-3). python3-wxgtk4.0 set to manually installed. xfonts-utils is already the newest version (1:7.7+7). xfonts-utils set to manually installed. xfonts-encodings is already the newest version (1:1.0.4-2.2). xfonts-encodings set to manually installed. python3-pytest is already the newest version (9.1.1-1). python3-pytest set to manually installed. python3-numpy is already the newest version (1:2.4.6+ds-5). python3-numpy set to manually installed. python3-ufolib2 is already the newest version (0.18.1+dfsg1-2). python3-ufolib2 set to manually installed. python3.14-minimal is already the newest version (3.14.8-1). python3.14-minimal set to manually installed. sfftw2 is already the newest version (2.1.5-8). sfftw2 set to manually installed. xz-utils is already the newest version (5.8.4-1). xz-utils set to manually installed. python3-pyparsing is already the newest version (3.3.3-1). python3-pyparsing set to manually installed. python3-pathspec is already the newest version (1.1.1-3). python3-pathspec set to manually installed. python3-pint is already the newest version (0.26.1-1). python3-pint set to manually installed. python3-pycbf is already the newest version (0.9.7+dfsg1-5.1+b3). python3-pycbf set to manually installed. python3-reportlab is already the newest version (5.0.0-4). python3-reportlab set to manually installed. python3-pip is already the newest version (26.1.2+dfsg-1). python3-pip set to manually installed. python3.14-tk is already the newest version (3.14.8-1). python3.14-tk set to manually installed. python3-six is already the newest version (1.17.0-3). python3-six set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.2-3). python3-tqdm is already the newest version (4.70.1-1). python3-tqdm set to manually installed. python3.14-dev is already the newest version (3.14.8-1). python3.14-dev set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev set to manually installed. python3-rlpycairo is already the newest version (0.3.0-4). python3-rlpycairo set to manually installed. sed is already the newest version (4.9-3). x11proto-dev is already the newest version (2025.1-1). x11proto-dev set to manually installed. python3-uharfbuzz is already the newest version (0.53.3-1+b1). python3-uharfbuzz set to manually installed. python3-yaml is already the newest version (6.0.3-1+b1). python3-yaml set to manually installed. unicode-data is already the newest version (17.0.0-2). unicode-data set to manually installed. python3-ordered-set is already the newest version (4.1.0-1). python3-ordered-set set to manually installed. python3-mrcfile is already the newest version (1.5.4-4). python3-mrcfile set to manually installed. rsync is already the newest version (3.5.1+ds1-1). rsync set to manually installed. sphinx-rtd-theme-common is already the newest version (3.1.0+dfsg-4). sphinx-rtd-theme-common set to manually installed. python3-zopfli is already the newest version (0.4.3-2). python3-zopfli set to manually installed. python3-wheel is already the newest version (0.47.0-2). python3-wheel set to manually installed. python3-pyqt5.qtopengl is already the newest version (5.15.11+dfsg-7). python3-pyqt5.qtopengl set to manually installed. python3-nxmx is already the newest version (0.0.7-1). python3-nxmx set to manually installed. sgml-base is already the newest version (1.31+nmu1). sgml-base set to manually installed. systemd-sysv is already the newest version (262-1). systemd-sysv set to manually installed. tzdata is already the newest version (2026e-1). tzdata set to manually installed. python3-urllib3 is already the newest version (2.8.0-2). python3-urllib3 set to manually installed. sysvinit-utils is already the newest version (3.18-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.Jr34TRgn1m (Reading database ... 64701 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.Jr34TRgn1m I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.Jr34TRgn1m I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.Jr34TRgn1m... I: success in 1517.4131 seconds Downloading packages 1to 100 out of 683 Downloading packages 101to 200 out of 683 Downloading packages 201to 300 out of 683 Downloading packages 301to 400 out of 683 Downloading packages 401to 500 out of 683 Downloading packages 501to 600 out of 683 Downloading packages 601to 683 out of 683 env --chdir=/srv/rebuilderd/tmp/rebuilderd54aeCr/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1791228810 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildRVCbCL/debrebuild.sbuildrc.Ee5oqtfXgz6c sbuild --build=amd64 --host=amd64 --arch-any --no-arch-all --binNMU-changelog= cctbx (2026.9+ds2+~3.30.1+ds1-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild against boost 1.92 -- all / amd64 / i386 Build Daemon (x86-conova-01) Mon, 05 Oct 2026 19:33:30 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildRVCbCL/debrebuild.tar.79IaQzO_zEZ1 --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --no-source --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=cctbx-2026.9+ds2+~3.30.1+ds1 /srv/rebuilderd/tmp/rebuilderd54aeCr/inputs/cctbx_2026.9+ds2+~3.30.1+ds1-1.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on osuosl44-amd64.novalocal +==============================================================================+ | cctbx 2026.9+ds2+~3.30.1+ds1-1+b1 (amd64) Wed, 14 Oct 2026 10:56:11 +0000 | +==============================================================================+ Package: cctbx Version: 2026.9+ds2+~3.30.1+ds1-1+b1 Source Version: 2026.9+ds2+~3.30.1+ds1-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildRVCbCL/debrebuild.tar.79IaQzO_zEZ1 to /srv/rebuilderd/tmp/tmp.sbuild.FWxa0cTKvb... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Wed, 14 Oct 2026 10:56:21 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderd54aeCr/inputs/cctbx_2026.9+ds2+~3.30.1+ds1-1.dsc exists in /srv/rebuilderd/tmp/rebuilderd54aeCr/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Wed, 14 Oct 2026 10:56:23 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, architecture-is-64-bit, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libboost-timer-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, pybuild-plugin-pyproject, python3-all-dev:any, python3-biopython, python3-editables, python3-h5py (>= 3), python3-hatchling, python3-hdf5plugin, python3-legacy-cgi, python3-matplotlib, python3-mrcfile, python3-msgpack, python3-natsort, python3-numpy, python3-nxmx, python3-ordered-set, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest, python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm, python3-wxgtk4.0, python3-yaml, rsync, scons, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, architecture-is-64-bit, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libboost-timer-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, pybuild-plugin-pyproject, python3-all-dev:any, python3-biopython, python3-editables, python3-h5py (>= 3), python3-hatchling, python3-hdf5plugin, python3-legacy-cgi, python3-matplotlib, python3-mrcfile, python3-msgpack, python3-natsort, python3-numpy, python3-nxmx, python3-ordered-set, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest, python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm, python3-wxgtk4.0, python3-yaml, rsync, scons, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-jLwL19/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Wed, 14 Oct 2026 10:56:26 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in amd64 arm64 armel armhf i386 loong64 ppc64 ppc64el riscv64 s390x) +------------------------------------------------------------------------------+ | Build environment Wed, 14 Oct 2026 10:56:26 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.111+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.111-1 (2026-09-28) amd64 (x86_64) Toolchain package versions: binutils_2.47-6 dpkg-dev_1.23.11 g++-16_16.2.0-3 gcc-16_16.2.0-3 libc6-dev_2.43-7 libstdc++-16-dev_16.2.0-3 libstdc++6_16.2.0-3 linux-libc-dev_7.2.9-1 Package versions: adwaita-icon-theme_51.0-1 architecture-properties_0.2.6+b2 at-spi2-common_2.62.0-2 autoconf_2.73-2 automake_1:1.19-2 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-4 binutils_2.47-6 binutils-common_2.47-6 binutils-x86-64-linux-gnu_2.47-6 bsdextrautils_2.42.4-1 bubblewrap_0.13.0-1 build-essential_12.12 bzip2_1.0.8-6+b2 ca-certificates_20260816 comerr-dev_2.1-1.47.4-1+b2 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-3 cpp-16-x86-64-linux-gnu_16.2.0-3 cpp-x86-64-linux-gnu_4:16.1.0-3 dash_0.5.12-12 dbus_1.16.2-8 dbus-bin_1.16.2-8 dbus-daemon_1.16.2-8 dbus-session-bus-common_1.16.2-8 dbus-system-bus-common_1.16.2-8 dbus-user-session_1.16.2-8 dconf-gsettings-backend_51.0-2 dconf-service_51.0-2 debconf_1.5.92 debhelper_14.5 debianutils_5.24 dh-autoreconf_23 dh-exec_0.31 dh-python_7.20260623 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 fftw-dev_2.1.5-8 fftw2_2.1.5-8 file_1:5.47-4 findutils_4.11.0-3 fontconfig_2.17.1-5 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python3-dateutil_2.9.0-5 python3-decorator_5.3.1-1 python3-dev_3.14.7-3 python3-editables_0.6-1 python3-flexcache_0.3-3 python3-flexparser_0.4-2 python3-fonttools_4.62.1-7+b1 python3-freetype_2.5.1-3 python3-h5py_3.16.0-7 python3-h5py-serial_3.16.0-7 python3-hatchling_1.30.1-2 python3-hdf5plugin_7.1.0-2 python3-idna_3.20-1 python3-iniconfig_2.1.0-2 python3-installer_1.0.1+dfsg1-3 python3-jaraco.context_6.0.1-2 python3-jaraco.functools_4.1.0-1 python3-kiwisolver_1.5.1-1 python3-legacy-cgi_2.6.4-3 python3-lxml_6.1.3-1 python3-lz4_4.4.5+dfsg-1+b1 python3-matplotlib_3.10.9+dfsg1-1+b1 python3-minimal_3.14.7-3 python3-more-itertools_11.1.0-3 python3-mpmath_1.4.1-4 python3-mrcfile_1.5.4-4 python3-msgpack_1.2.1-1 python3-natsort_8.4.0-2 python3-numpy_1:2.4.6+ds-5 python3-numpy-dev_1:2.4.6+ds-5 python3-nxmx_0.0.7-1 python3-opengl_3.1.10+dfsg-1 python3-ordered-set_4.1.0-1 python3-packaging_26.2-3 python3-pathspec_1.1.1-3 python3-pil_12.3.0-1+b1 python3-pil.imagetk_12.3.0-1+b1 python3-pint_0.26.1-1 python3-pip_26.1.2+dfsg-1 python3-platformdirs_4.11.9-1 python3-pluggy_1.6.0-2 python3-procrunner_2.3.3-2 python3-psutil_7.2.2-1 python3-pycbf_0.9.7+dfsg1-5.1+b3 python3-pygments_2.20.0+dfsg-2 python3-pymol_3.1.0+dfsg-1+b4 python3-pyparsing_3.3.3-1 python3-pyproject-hooks_1.3.3-1 python3-pyqt5_5.15.11+dfsg-7 python3-pyqt5.qtopengl_5.15.11+dfsg-7 python3-pyqt5.sip_12.19.0-1+b1 python3-pytest_9.1.1-1 python3-reportlab_5.0.0-4 python3-requests_2.34.2-1 python3-rlpycairo_0.3.0-4 python3-scipy_1.17.1-5+b1 python3-setuptools_84.0.0-2 python3-six_1.17.0-3 python3-sympy_1.14.0-5 python3-tk_3.14.7-3 python3-tqdm_4.70.1-1 python3-trove-classifiers_2026.9.21.13-1 python3-typing-extensions_4.16.0-5 python3-ufolib2_0.18.1+dfsg1-2 python3-uharfbuzz_0.53.3-1+b1 python3-urllib3_2.8.0-2 python3-wheel_0.47.0-2 python3-wxgtk4.0_4.2.5+dfsg-3 python3-yaml_6.0.3-1+b1 python3-zipp_3.23.0-2 python3-zopfli_0.4.3-2 python3.14_3.14.8-1 python3.14-dev_3.14.8-1 python3.14-minimal_3.14.8-1 python3.14-tk_3.14.8-1 readline-common_8.3-4 rsync_3.5.1+ds1-1 scons_4.10.1+dfsg-2 sed_4.9-3 sensible-utils_0.0.26 sfftw-dev_2.1.5-8 sfftw2_2.1.5-8 sgml-base_1.31+nmu1 shared-mime-info_2.4-5+b3 sphinx-rtd-theme-common_3.1.0+dfsg-4 systemd_262-1 systemd-sysv_262-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-6 tzdata_2026e-1 unicode-data_17.0.0-2 util-linux_2.42.4-1 w3c-sgml-lib_1.3-3 x11-common_1:7.7+26 x11proto-dev_2025.1-1 xfonts-encodings_1:1.0.4-2.2 xfonts-utils_1:7.7+7 xkb-data_2.48-1 xml-core_0.21 xorg-sgml-doctools_1:1.12.1-1 xtrans-dev_1.6.0-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Wed, 14 Oct 2026 10:56:26 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cctbx Binary: libcctbx0, libcctbx-dev, python3-cctbx Architecture: amd64 arm64 armel armhf i386 loong64 ppc64 ppc64el riscv64 s390x Version: 2026.9+ds2+~3.30.1+ds1-1 Maintainer: Debian Science Maintainers Uploaders: Picca Frédéric-Emmanuel , Radostan Riedel , Roland Mas , Homepage: https://github.com/cctbx/cctbx_project Standards-Version: 4.7.3 Vcs-Browser: https://salsa.debian.org/science-team/cctbx Vcs-Git: https://salsa.debian.org/science-team/cctbx.git Testsuite: autopkgtest Testsuite-Triggers: bitshuffle, g++, python3-all, python3-dials-data, python3-h5py, python3-pytest, python3-pytest-mock, python3-pytest-regressions, python3-yaml Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, architecture-is-64-bit, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libboost-timer-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, pybuild-plugin-pyproject, python3-all-dev:any, python3-biopython , python3-editables, python3-h5py (>= 3) , python3-hatchling, python3-hdf5plugin , python3-legacy-cgi , python3-matplotlib , python3-mrcfile , python3-msgpack , python3-natsort , python3-numpy , python3-nxmx , python3-ordered-set , python3-pint , python3-pip, python3-procrunner , python3-psutil , python3-pycbf (>= 0.9.7+dfsg1-2~) , python3-pymol , python3-pytest , python3-requests , python3-scipy , python3-setuptools, python3-six, python3-tqdm , python3-wxgtk4.0 , python3-yaml , rsync, scons Package-List: libcctbx-dev deb libdevel optional arch=amd64,arm64,armel,armhf,i386,loong64,ppc64,ppc64el,riscv64,s390x libcctbx0 deb libs optional arch=amd64,arm64,armel,armhf,i386,loong64,ppc64,ppc64el,riscv64,s390x python3-cctbx deb python optional arch=amd64,arm64,armel,armhf,i386,loong64,ppc64,ppc64el,riscv64,s390x Checksums-Sha1: 5c903216ffbf817c6f52a80d9f7812c7a6223245 402668 cctbx_2026.9+ds2+~3.30.1+ds1.orig-dxtbx.tar.xz f43847c7bdfdac155a7c3942ad60d95599b4ab3b 106529112 cctbx_2026.9+ds2+~3.30.1+ds1.orig.tar.xz 4c2885b3092a88cda1f3144a14c9c7616d1a6836 420388 cctbx_2026.9+ds2+~3.30.1+ds1-1.debian.tar.xz Checksums-Sha256: d41002a649c18fef3b687d0ecb41ce6e399c3f168f32af35b472ea5bacfc20c2 402668 cctbx_2026.9+ds2+~3.30.1+ds1.orig-dxtbx.tar.xz e0b7ce095abc06e2bf704ffcb3b781d86fd9dac548cbb86e8998ee6652c2ba1e 106529112 cctbx_2026.9+ds2+~3.30.1+ds1.orig.tar.xz 9b6316b514f4be02ecdf7c5092a50f2d455ddbc85cca0c12d510eb8540f77d97 420388 cctbx_2026.9+ds2+~3.30.1+ds1-1.debian.tar.xz Files: b9746dad2ae8427096a0752ac7cd2834 402668 cctbx_2026.9+ds2+~3.30.1+ds1.orig-dxtbx.tar.xz aadd95ba6cd32afeb4b48ba0f371a3b2 106529112 cctbx_2026.9+ds2+~3.30.1+ds1.orig.tar.xz 66ccb5a0e893cb811d05ce49e3063dbe 420388 cctbx_2026.9+ds2+~3.30.1+ds1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting cctbx in /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 dpkg-source: info: unpacking cctbx_2026.9+ds2+~3.30.1+ds1.orig.tar.xz dpkg-source: info: unpacking cctbx_2026.9+ds2+~3.30.1+ds1.orig-dxtbx.tar.xz dpkg-source: info: unpacking cctbx_2026.9+ds2+~3.30.1+ds1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying workaround_env_config.patch dpkg-source: info: applying boost_adaptbx.patch dpkg-source: info: applying reproducible-timestamp.patch dpkg-source: info: applying libtbx_env-per-python-version.patch dpkg-source: info: applying iotbx_with_system_libraries.patch dpkg-source: info: applying 0007-iotbx-mtz-load-ccp4-data-from-the-right-directory.patch dpkg-source: info: applying 0009-scons-soname.patch dpkg-source: info: applying 0010-fix-cbflib_adaptbx-compilation-with-the-system-cbfli.patch dpkg-source: info: applying 0011-dxtbx-use-the-system-libraries.patch dpkg-source: info: applying 0013-dxtbx-do-not-modify-the-HDF5_PLUGIN_PATH.patch dpkg-source: info: applying 0015-dxtbx-adapte-the-boost_python-link-name.patch dpkg-source: info: applying 0016-cctbx-avoid-FTBFS-when-cctbx-is-already-installed.patch dpkg-source: info: applying 0017-cctbx-do-not-hide-sign-comparison.patch dpkg-source: info: applying 0017-dxtbx-fix-for-unsigned-char-arch.patch dpkg-source: info: applying 0016-unactivated-ucif-compilation.patch dpkg-source: info: applying 0017-smtbx-save-the-generated-test-file-under-tmp.patch dpkg-source: info: applying 0018-iotbx-link-with-ccp4c-instead-of-ccp4io.patch dpkg-source: info: applying 0019-cbflib_adapter-link-cbf-private-with-cbf.patch dpkg-source: info: applying 0020-spotfinder-link-with-dxtbxspotfinder.patch dpkg-source: info: applying 0021-rstbx-link-with-ann_adaptor.patch dpkg-source: info: applying 0022-rstbx-link-rstbx_integration_ext-with-ann_adaptor.patch dpkg-source: info: applying 0023-rstbx-use-the-annself_excluded-namespace-from-ann-cc.patch dpkg-source: info: applying 0024-more-ann-ann-cctbx.patch dpkg-source: info: applying 0031-Add-missing-ctdint-header.patch dpkg-source: info: applying 0032-no-future.patch dpkg-source: info: applying 0027-Replace-unmaintained-orderedset-with-ordered_set.patch dpkg-source: info: applying 0028-Fix-pip-invocation.patch dpkg-source: info: applying 0028-dxtbx-force-pathlib-in-data-fetcher.patch dpkg-source: info: applying 0030_broken_six.patch dpkg-source: info: applying 0030-Stop-linking-against-boost_system.patch dpkg-source: info: applying hdf5-2.1.0.patch Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 2026.9+ds2+~3.30.1+ds1-1+b1 User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1791228810 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package cctbx dpkg-buildpackage: info: source version 2026.9+ds2+~3.30.1+ds1-1+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by all / amd64 / i386 Build Daemon (x86-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' cp -f debian/pyproject.toml pyproject.toml cp -r debian/annlib_adaptbx annlib_adaptbx mkdir annlib cp -r debian/ccp4io_adaptbx ccp4io_adaptbx mkdir ccp4io cp -r debian/gui_resources gui_resources dh_auto_clean -- --name cctbx pybuild --clean -i python{version} -p 3.14 --name cctbx --parallel=6 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_auto_clean --sourcedirectory=dxtbx -- --name dxtbx pybuild --clean -i python{version} -p 3.14 --name dxtbx --dir dxtbx --parallel=6 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; find . -name __pycache__ -type d -exec rm -rf {} \; rm -f pyproject.toml rm -rf annlib annlib_adaptbx rm -rf ccp4io ccp4io_adaptbx rm -rf gui_resources make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libcctbx0.substvars debian/libcctbx-dev.substvars debian/python3-cctbx.substvars debian/files rm -fr -- debian/libcctbx0/ debian/tmp/ debian/libcctbx-dev/ debian/python3-cctbx/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' cp -f debian/pyproject.toml pyproject.toml cp -r debian/annlib_adaptbx annlib_adaptbx mkdir annlib cp -r debian/ccp4io_adaptbx ccp4io_adaptbx mkdir ccp4io cp -r debian/gui_resources gui_resources dh_auto_configure -- --name cctbx pybuild --configure -i python{version} -p 3.14 --name cctbx --parallel=6 dh_auto_configure --sourcedirectory=dxtbx -- --name dxtbx pybuild --configure -i python{version} -p 3.14 --name dxtbx --dir dxtbx --parallel=6 dh_auto_configure -- --name cctbx -s custom --configure-args="mkdir -p {build_dir}_ && cd {build_dir}_ \ && {interpreter} /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif annlib ccp4io" pybuild --configure -i python{version} -p 3.14 --name cctbx -s custom --configure-args="mkdir -p {build_dir}_ && cd {build_dir}_ && {interpreter} /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif annlib ccp4io" --parallel=6 I: pybuild base:385: mkdir -p '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build'_ && cd '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build'_ && python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif annlib ccp4io Python: 3.14.8 "/usr/bin/python3.14" Compiler: default Build mode: debug Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Enable KOKKOS: False Use conda: False Use opt_resources if available: False Use environment flags: True Enable C++11: False CXXFLAGS = -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-z,relro -lhdf5_serial command_version_suffix: None Relocatable paths anchored at: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_ Top-down list of all modules involved: xcif "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif" wxtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/wxtbx" serialtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/serialtbx" rstbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx" spotfinder "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder" mmtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx" gltbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx" dxtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx" iotbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx" smtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx" ucif "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ucif" crys3d "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/crys3d" cctbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx" chiltbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/chiltbx" ccp4io+adaptbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io" "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io_adaptbx" cbflib_adaptbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx" annlib+adaptbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib" "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx" scitbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx" fable "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable" cma_es "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cma_es" omptbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/omptbx" boost_adaptbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx" tbxx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/tbxx" libtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx" Creating files in build directory: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_" dispatcher_include_template.sh dispatcher_head.sh setpaths.sh setpaths.csh setpaths_all.sh setpaths_all.csh setpaths_debug.sh unsetpaths.sh setpaths_debug.csh unsetpaths.csh SConstruct Makefile run_tests.csh Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/crys3d/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/wxtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/libtbx_refresh.py" Generating C++ header files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family" Generating C++ files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family/boost_python" Using fable to convert scitbx/lbfgs.f Updating entry points for scitbx 1 entries for entry point pytest_randomly.random_seeder Obtaining file:///build/reproducible-path/cctbx-2026.9%2Bds2%2B~3.30.1%2Bds1/dxtbx Checking if build backend supports build_editable: started Checking if build backend supports build_editable: finished with status 'done' Preparing editable metadata (pyproject.toml): started Preparing editable metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: dxtbx Building editable for dxtbx (pyproject.toml): started Building editable for dxtbx (pyproject.toml): finished with status 'done' Created wheel for dxtbx: filename=dxtbx-3.30.0-py3-none-any.whl size=6960 sha256=2ab9e4a6b0e94aed55de6acc27fda1a6c6cb5fc78325cf7bd9098218cc6248b5 Stored in directory: /tmp/pip-ephem-wheel-cache-azqdc1fl/wheels/8c/08/36/049ecdb41757e68591ceb56d9b10cb84f6b6541b57aa8342af Successfully built dxtbx Installing collected packages: dxtbx Successfully installed dxtbx-3.30.0 Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/cctbx/eltbx" Generating C++ files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/cctbx/boost_python" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/crys3d/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/smtbx/boost_python" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/libtbx_refresh.py" Using fable to convert iotbx/pdb/hybrid_36_f.f Writing: iotbx/pdb/hybrid_36_fem.cpp Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/gltbx" fonts: 8x13 9x15 10x20 Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/libtbx_refresh.py" Done. make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' # Python modules dh_auto_build -- --name cctbx pybuild --build -i python{version} -p 3.14 --name cctbx --parallel=6 I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx * Building wheel... running bdist_wheel running build running build_py creating build/lib/annlib_adaptbx copying annlib_adaptbx/__init__.py -> build/lib/annlib_adaptbx copying annlib_adaptbx/run_tests.py -> build/lib/annlib_adaptbx creating build/lib/fftw3tbx copying fftw3tbx/__init__.py -> build/lib/fftw3tbx copying fftw3tbx/libtbx_refresh.py -> build/lib/fftw3tbx copying fftw3tbx/tst_ext.py -> build/lib/fftw3tbx creating build/lib/smtbx copying smtbx/development.py -> build/lib/smtbx copying smtbx/__init__.py -> build/lib/smtbx copying smtbx/run_tests.py -> build/lib/smtbx copying smtbx/libtbx_refresh.py -> build/lib/smtbx copying smtbx/utils.py -> build/lib/smtbx creating build/lib/wxtbx copying wxtbx/checklistctrl.py -> build/lib/wxtbx copying wxtbx/anomalous_scattering.py -> build/lib/wxtbx copying wxtbx/bitmaps.py -> build/lib/wxtbx copying wxtbx/metallicbutton.py -> build/lib/wxtbx copying wxtbx/layout.py -> build/lib/wxtbx copying wxtbx/tables.py -> build/lib/wxtbx copying wxtbx/adp_statistics.py -> build/lib/wxtbx copying wxtbx/xtriage.py -> build/lib/wxtbx copying wxtbx/windows.py -> build/lib/wxtbx copying wxtbx/browser.py -> build/lib/wxtbx copying wxtbx/monitor.py -> build/lib/wxtbx copying wxtbx/custom_restraints.py -> build/lib/wxtbx copying wxtbx/sequence_view.py -> build/lib/wxtbx copying wxtbx/listeditor.py -> build/lib/wxtbx copying wxtbx/ensemble_validation.py -> build/lib/wxtbx copying wxtbx/segmentedctrl.py -> build/lib/wxtbx copying wxtbx/process_control.py -> build/lib/wxtbx copying wxtbx/path_dialogs.py -> build/lib/wxtbx copying wxtbx/symmetry_dialog.py -> build/lib/wxtbx copying wxtbx/b_plot.py -> build/lib/wxtbx copying wxtbx/qstat_view.py -> build/lib/wxtbx copying wxtbx/heavy_atoms.py -> build/lib/wxtbx copying wxtbx/__init__.py -> build/lib/wxtbx copying wxtbx/mtz_dump.py -> build/lib/wxtbx copying wxtbx/run_tests.py -> build/lib/wxtbx copying wxtbx/errors.py -> build/lib/wxtbx copying wxtbx/pdb_editor.py -> build/lib/wxtbx copying wxtbx/misc_dialogs.py -> build/lib/wxtbx copying wxtbx/polygon.py -> build/lib/wxtbx copying wxtbx/app.py -> build/lib/wxtbx copying wxtbx/polygon_db_viewer.py -> build/lib/wxtbx copying wxtbx/icons.py -> build/lib/wxtbx copying wxtbx/info_panels.py -> build/lib/wxtbx copying wxtbx/utils.py -> build/lib/wxtbx creating build/lib/cma_es copying cma_es/cma_es_interface.py -> build/lib/cma_es copying cma_es/__init__.py -> build/lib/cma_es copying cma_es/run_tests.py -> build/lib/cma_es copying cma_es/tst_cma_es.py -> build/lib/cma_es creating build/lib/boost_adaptbx copying boost_adaptbx/hybrid_times.py -> build/lib/boost_adaptbx copying boost_adaptbx/__init__.py -> build/lib/boost_adaptbx copying boost_adaptbx/run_tests.py -> build/lib/boost_adaptbx copying boost_adaptbx/libtbx_refresh.py -> build/lib/boost_adaptbx creating build/lib/gltbx copying gltbx/wx_scene.py -> build/lib/gltbx copying gltbx/viewer_utils.py -> build/lib/gltbx copying gltbx/wx_motion_on_tab.py -> build/lib/gltbx copying gltbx/gl.py -> build/lib/gltbx copying gltbx/images.py -> build/lib/gltbx copying gltbx/generate_functions_bpl.py -> build/lib/gltbx copying gltbx/wx_viewers_images.py -> build/lib/gltbx copying gltbx/wx_viewer_example.py -> build/lib/gltbx copying gltbx/generate_defines_bpl.py -> build/lib/gltbx copying gltbx/glu.py -> build/lib/gltbx copying gltbx/wx_cube.py -> build/lib/gltbx copying gltbx/fonts.py -> build/lib/gltbx copying gltbx/util.py -> build/lib/gltbx copying gltbx/extract_opengl_specs.py -> build/lib/gltbx copying gltbx/tst_fonts.py -> build/lib/gltbx copying gltbx/wx_viewer.py -> build/lib/gltbx copying gltbx/__init__.py -> build/lib/gltbx copying gltbx/generate_fonts_ucs_cpp.py -> build/lib/gltbx copying gltbx/quadrics.py -> build/lib/gltbx copying gltbx/run_tests.py -> build/lib/gltbx copying gltbx/gl_managed.py -> build/lib/gltbx copying gltbx/wx_viewer_leapmotion.py -> build/lib/gltbx copying gltbx/tst.py -> build/lib/gltbx copying gltbx/tst_ellipsoids.py -> build/lib/gltbx copying gltbx/tst_viewer_utils.py -> build/lib/gltbx copying gltbx/libtbx_refresh.py -> build/lib/gltbx copying gltbx/wx_ellipsoids_test.py -> build/lib/gltbx creating build/lib/mmtbx copying mmtbx/map_tools.py -> build/lib/mmtbx copying mmtbx/pdbtools.py -> build/lib/mmtbx copying mmtbx/resolve_resources.py -> build/lib/mmtbx copying mmtbx/xmanip.py -> build/lib/mmtbx copying mmtbx/msa.py -> build/lib/mmtbx copying mmtbx/pdb_symmetry.py -> build/lib/mmtbx copying mmtbx/lattice.py -> build/lib/mmtbx copying mmtbx/model_vs_data.py -> build/lib/mmtbx copying mmtbx/proq2.py -> build/lib/mmtbx copying mmtbx/pdb_distances.py -> build/lib/mmtbx copying mmtbx/arrays.py -> build/lib/mmtbx copying mmtbx/process_predicted_model.py -> build/lib/mmtbx copying mmtbx/clashes.py -> build/lib/mmtbx copying mmtbx/grow_density.py -> build/lib/mmtbx copying mmtbx/xmanip_tasks.py -> build/lib/mmtbx copying mmtbx/find_peaks.py -> build/lib/mmtbx copying mmtbx/__init__.py -> build/lib/mmtbx copying mmtbx/run_tests.py -> build/lib/mmtbx copying mmtbx/real_space_correlation.py -> build/lib/mmtbx copying mmtbx/superpose.py -> build/lib/mmtbx copying mmtbx/libtbx_refresh.py -> build/lib/mmtbx copying mmtbx/f_model_info.py -> build/lib/mmtbx copying mmtbx/invariant_domain.py -> build/lib/mmtbx copying mmtbx/restraints.py -> build/lib/mmtbx copying mmtbx/domains_from_pae.py -> build/lib/mmtbx creating build/lib/fable copying fable/simple_compilation.py -> build/lib/fable copying fable/intrinsics.py -> build/lib/fable copying fable/tst_cout_compile.py -> build/lib/fable copying fable/cout.py -> build/lib/fable copying fable/equivalence.py -> build/lib/fable copying fable/read.py -> build/lib/fable copying fable/__init__.py -> build/lib/fable copying fable/run_tests.py -> build/lib/fable copying fable/tokenization.py -> build/lib/fable copying fable/tst_equivalence.py -> build/lib/fable copying fable/tst_read.py -> build/lib/fable copying fable/tst_ext.py -> build/lib/fable copying fable/utils.py -> build/lib/fable copying fable/tst_cout.py -> build/lib/fable creating build/lib/rstbx copying rstbx/__init__.py -> build/lib/rstbx copying rstbx/run_tests.py -> build/lib/rstbx copying rstbx/utils.py -> build/lib/rstbx creating build/lib/spotfinder copying spotfinder/__init__.py -> build/lib/spotfinder copying spotfinder/run_tests.py -> build/lib/spotfinder copying spotfinder/exception.py -> build/lib/spotfinder creating build/lib/iotbx copying iotbx/poscar.py -> build/lib/iotbx copying iotbx/cif_mtz_data_labels.py -> build/lib/iotbx copying iotbx/map_tools.py -> build/lib/iotbx copying iotbx/data_plots.py -> build/lib/iotbx copying iotbx/phil.py -> build/lib/iotbx copying iotbx/pymol.py -> build/lib/iotbx copying iotbx/logfiles.py -> build/lib/iotbx copying iotbx/reflection_file_converter.py -> build/lib/iotbx copying iotbx/table_one.py -> build/lib/iotbx copying iotbx/simple_parser.py -> build/lib/iotbx copying iotbx/map_model_manager.py -> build/lib/iotbx copying iotbx/csv_utils.py -> build/lib/iotbx copying iotbx/reflection_file_utils.py -> build/lib/iotbx copying iotbx/phases.py -> build/lib/iotbx copying iotbx/builders.py -> build/lib/iotbx copying iotbx/builders_depending_on_smtbx.py -> build/lib/iotbx copying iotbx/reflection_file_reader.py -> build/lib/iotbx copying iotbx/extract_xtal_data.py -> build/lib/iotbx copying iotbx/wildcard.py -> build/lib/iotbx copying iotbx/option_parser.py -> build/lib/iotbx copying iotbx/symmetry.py -> build/lib/iotbx copying iotbx/__init__.py -> build/lib/iotbx copying iotbx/ranges.py -> build/lib/iotbx copying iotbx/reflection_file_editor.py -> build/lib/iotbx copying iotbx/run_tests.py -> build/lib/iotbx copying iotbx/map_manager.py -> build/lib/iotbx copying iotbx/libtbx_refresh.py -> build/lib/iotbx copying iotbx/file_reader.py -> build/lib/iotbx copying iotbx/cli_parser.py -> build/lib/iotbx copying iotbx/merging_statistics.py -> build/lib/iotbx copying iotbx/format.py -> build/lib/iotbx copying iotbx/crystal_symmetry_from_any.py -> build/lib/iotbx copying iotbx/mtrix_biomt.py -> build/lib/iotbx creating build/lib/qttbx copying qttbx/qt.py -> build/lib/qttbx copying qttbx/phil.py -> build/lib/qttbx copying qttbx/__init__.py -> build/lib/qttbx copying qttbx/run_tests.py -> build/lib/qttbx creating build/lib/simtbx copying simtbx/__init__.py -> build/lib/simtbx copying simtbx/run_tests.py -> build/lib/simtbx creating build/lib/omptbx copying omptbx/__init__.py -> build/lib/omptbx copying omptbx/tst.py -> build/lib/omptbx creating build/lib/xcif copying xcif/__init__.py -> build/lib/xcif copying xcif/run_tests.py -> build/lib/xcif creating build/lib/fast_linalg copying fast_linalg/__init__.py -> build/lib/fast_linalg creating build/lib/serialtbx copying serialtbx/__init__.py -> build/lib/serialtbx creating build/lib/scitbx copying scitbx/simplex.py -> build/lib/scitbx copying scitbx/minimizers.py -> build/lib/scitbx copying scitbx/fftpack.py -> build/lib/scitbx copying scitbx/differential_evolution.py -> build/lib/scitbx copying scitbx/direct_search_simulated_annealing.py -> build/lib/scitbx copying scitbx/regular_grid_on_unit_sphere.py -> build/lib/scitbx copying scitbx/cubicle_neighbors.py -> build/lib/scitbx copying scitbx/smoothing.py -> build/lib/scitbx copying scitbx/lbfgsb.py -> build/lib/scitbx copying scitbx/golden_section_search.py -> build/lib/scitbx copying scitbx/genetic_algorithm_with_mp.py -> build/lib/scitbx copying scitbx/minpack.py -> build/lib/scitbx copying scitbx/cross_entropy.py -> build/lib/scitbx copying scitbx/__init__.py -> build/lib/scitbx copying scitbx/run_tests.py -> build/lib/scitbx copying scitbx/libtbx_refresh.py -> build/lib/scitbx copying scitbx/r3_utils.py -> build/lib/scitbx copying scitbx/restraints.py -> build/lib/scitbx creating build/lib/cctbx copying cctbx/run_examples.py -> build/lib/cctbx copying cctbx/anharmonic.py -> build/lib/cctbx copying cctbx/french_wilson.py -> build/lib/cctbx copying cctbx/math_module.py -> build/lib/cctbx copying cctbx/multipolar.py -> build/lib/cctbx copying cctbx/euclidean_model_matching.py -> build/lib/cctbx copying cctbx/crystal_orientation.py -> build/lib/cctbx copying cctbx/dmtbx.py -> build/lib/cctbx copying cctbx/__init__.py -> build/lib/cctbx copying cctbx/run_tests.py -> build/lib/cctbx copying cctbx/libtbx_refresh.py -> build/lib/cctbx copying cctbx/adptbx.py -> build/lib/cctbx copying cctbx/translation_search.py -> build/lib/cctbx copying cctbx/r_free_utils.py -> build/lib/cctbx copying cctbx/statistics.py -> build/lib/cctbx copying cctbx/symmetry_search.py -> build/lib/cctbx creating build/lib/cootbx copying cootbx/hydrogens_button.py -> build/lib/cootbx copying cootbx/watch_file.py -> build/lib/cootbx copying cootbx/simple_zoom_list.py -> build/lib/cootbx copying cootbx/interactive_edit.py -> build/lib/cootbx copying cootbx/xmlrpc_server.py -> build/lib/cootbx copying cootbx/validation_lists.py -> build/lib/cootbx copying cootbx/__init__.py -> build/lib/cootbx copying cootbx/ligand_checklist.py -> build/lib/cootbx copying cootbx/view_refinement.py -> build/lib/cootbx creating build/lib/ccp4io_adaptbx copying ccp4io_adaptbx/copy_files.py -> build/lib/ccp4io_adaptbx copying ccp4io_adaptbx/__init__.py -> build/lib/ccp4io_adaptbx copying ccp4io_adaptbx/tst.py -> build/lib/ccp4io_adaptbx creating build/lib/libtbx copying libtbx/configure.py -> build/lib/libtbx copying libtbx/cluster.py -> build/lib/libtbx copying libtbx/find_reference_cycles.py -> build/lib/libtbx copying libtbx/dlite.py -> build/lib/libtbx copying libtbx/tst_version.py -> build/lib/libtbx copying libtbx/tst_containers.py -> build/lib/libtbx copying libtbx/citations.py -> build/lib/libtbx copying libtbx/resource_monitor.py -> build/lib/libtbx copying libtbx/tst_binary_search.py -> build/lib/libtbx copying libtbx/smart_open.py -> build/lib/libtbx copying libtbx/thread_utils.py -> build/lib/libtbx copying libtbx/easy_run.py -> build/lib/libtbx copying libtbx/word_index_generator.py -> build/lib/libtbx copying libtbx/xmlrpc_utils.py -> build/lib/libtbx copying libtbx/clusterTests.py -> build/lib/libtbx copying libtbx/code_analysis.py -> build/lib/libtbx copying libtbx/path.py -> build/lib/libtbx copying libtbx/console_utils.py -> build/lib/libtbx copying libtbx/cli.py -> build/lib/libtbx copying libtbx/file_clutter.py -> build/lib/libtbx copying libtbx/math_utils.py -> build/lib/libtbx copying libtbx/forward_compatibility.py -> build/lib/libtbx copying libtbx/tst_run_tests_parallel_unique_dirs.py -> build/lib/libtbx copying libtbx/assert_utils.py -> build/lib/libtbx copying libtbx/progress.py -> build/lib/libtbx copying libtbx/tst_str_utils.py -> build/lib/libtbx copying libtbx/tst_mahalanobis.py -> build/lib/libtbx copying libtbx/complex_math.py -> build/lib/libtbx copying libtbx/tst_xmlrpc_utils.py -> build/lib/libtbx copying libtbx/easy_profile.py -> build/lib/libtbx copying libtbx/tst_utils.py -> build/lib/libtbx copying libtbx/tst_thread_utils.py -> build/lib/libtbx copying libtbx/tst_citations.py -> build/lib/libtbx copying libtbx/table_utils.py -> build/lib/libtbx copying libtbx/clear_paths.py -> build/lib/libtbx copying libtbx/simplexml.py -> build/lib/libtbx copying libtbx/tst_program_template.py -> build/lib/libtbx copying libtbx/tst_scheduling.py -> build/lib/libtbx copying libtbx/objgraph.py -> build/lib/libtbx copying libtbx/object_oriented_patterns.py -> build/lib/libtbx copying libtbx/tst_guided_coding.py -> build/lib/libtbx copying libtbx/cpp_function_name.py -> build/lib/libtbx copying libtbx/tst_t96_roster.py -> build/lib/libtbx copying libtbx/tst_fully_buffered_timeout.py -> build/lib/libtbx copying libtbx/log.py -> build/lib/libtbx copying libtbx/pkg_utils.py -> build/lib/libtbx copying libtbx/tst_representation.py -> build/lib/libtbx copying libtbx/crossmingw.py -> build/lib/libtbx copying libtbx/tst_easy_pickle.py -> build/lib/libtbx copying libtbx/tst_easy_mp_state.py -> build/lib/libtbx copying libtbx/tst_python_code_parsing.py -> build/lib/libtbx copying libtbx/str_utils.py -> build/lib/libtbx copying libtbx/binary_search.py -> build/lib/libtbx copying libtbx/tst_topological_sort.py -> build/lib/libtbx copying libtbx/option_parser.py -> build/lib/libtbx copying libtbx/try_hello_world_c.py -> build/lib/libtbx copying libtbx/pyframe.py -> build/lib/libtbx copying libtbx/wingide.py -> build/lib/libtbx copying libtbx/tst_find_unused_imports.py -> build/lib/libtbx copying libtbx/__init__.py -> build/lib/libtbx copying libtbx/tst_add_docstrings_with_ai.py -> build/lib/libtbx copying libtbx/env_config.py -> build/lib/libtbx copying libtbx/tst_easy_mp_multicore.py -> build/lib/libtbx copying libtbx/tst_dlite.py -> build/lib/libtbx copying libtbx/start_print_trace.py -> build/lib/libtbx copying libtbx/run_tests.py -> build/lib/libtbx copying libtbx/easy_pickle.py -> build/lib/libtbx copying libtbx/introspection.py -> build/lib/libtbx copying libtbx/tst_run_tests_parallel_retry.py -> build/lib/libtbx copying libtbx/tst_word_index_generator.py -> build/lib/libtbx copying libtbx/metric_prefixes.py -> build/lib/libtbx copying libtbx/callbacks.py -> build/lib/libtbx copying libtbx/tst_object_oriented_patterns.py -> build/lib/libtbx copying libtbx/tst_easy_mp.py -> build/lib/libtbx copying libtbx/mpi4py.py -> build/lib/libtbx copying libtbx/libtbx_refresh.py -> build/lib/libtbx copying libtbx/topological_sort.py -> build/lib/libtbx copying libtbx/program_template.py -> build/lib/libtbx copying libtbx/tst_math_utils.py -> build/lib/libtbx copying libtbx/python_code_parsing.py -> build/lib/libtbx copying libtbx/containers.py -> build/lib/libtbx copying libtbx/tst_runtime_utils.py -> build/lib/libtbx copying libtbx/load_env.py -> build/lib/libtbx copying libtbx/tst_conda_dispatcher.py -> build/lib/libtbx copying libtbx/easy_mp.py -> build/lib/libtbx copying libtbx/runtime_utils.py -> build/lib/libtbx copying libtbx/version.py -> build/lib/libtbx copying libtbx/tst_citation_encoding.py -> build/lib/libtbx copying libtbx/xmlrpc_server_example.py -> build/lib/libtbx copying libtbx/subprocess_with_fixes.py -> build/lib/libtbx copying libtbx/utils.py -> build/lib/libtbx copying libtbx/pyplot.py -> build/lib/libtbx copying libtbx/tst_path.py -> build/lib/libtbx creating build/lib/cctbx_website copying cctbx_website/__init__.py -> build/lib/cctbx_website copying cctbx_website/run_tests.py -> build/lib/cctbx_website copying cctbx_website/libtbx_refresh.py -> build/lib/cctbx_website creating build/lib/cbflib_adaptbx copying cbflib_adaptbx/copy_files.py -> build/lib/cbflib_adaptbx copying cbflib_adaptbx/exercise_compression.py -> build/lib/cbflib_adaptbx copying cbflib_adaptbx/__init__.py -> build/lib/cbflib_adaptbx copying cbflib_adaptbx/run_tests.py -> build/lib/cbflib_adaptbx creating build/lib/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/self_match.py -> build/lib/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/sample.py -> build/lib/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/__init__.py -> build/lib/annlib_adaptbx/annlib_adaptbx creating build/lib/annlib_adaptbx/source_generators copying annlib_adaptbx/source_generators/__init__.py -> build/lib/annlib_adaptbx/source_generators copying annlib_adaptbx/source_generators/generate_all.py -> build/lib/annlib_adaptbx/source_generators creating build/lib/smtbx/command_line copying smtbx/command_line/absolute_structure.py -> build/lib/smtbx/command_line copying smtbx/command_line/refine.py -> build/lib/smtbx/command_line copying smtbx/command_line/anom_refine.py -> build/lib/smtbx/command_line copying smtbx/command_line/__init__.py -> build/lib/smtbx/command_line copying smtbx/command_line/masks.py -> build/lib/smtbx/command_line copying smtbx/command_line/benchmark_refinement.py -> build/lib/smtbx/command_line creating build/lib/smtbx/stl copying smtbx/stl/map.py -> build/lib/smtbx/stl copying smtbx/stl/__init__.py -> build/lib/smtbx/stl creating build/lib/smtbx/masks copying smtbx/masks/__init__.py -> build/lib/smtbx/masks creating build/lib/smtbx/array_family copying smtbx/array_family/__init__.py -> build/lib/smtbx/array_family creating build/lib/smtbx/source_generators copying smtbx/source_generators/flex_fwd_h.py -> build/lib/smtbx/source_generators copying smtbx/source_generators/__init__.py -> build/lib/smtbx/source_generators creating build/lib/smtbx/regression copying smtbx/regression/__init__.py -> build/lib/smtbx/regression copying smtbx/regression/tst_commandline_refine.py -> build/lib/smtbx/regression copying smtbx/regression/tst_commandline_anomrefine.py -> build/lib/smtbx/regression creating build/lib/smtbx/ab_initio copying smtbx/ab_initio/charge_flipping.py -> build/lib/smtbx/ab_initio copying smtbx/ab_initio/__init__.py -> build/lib/smtbx/ab_initio creating build/lib/smtbx/refinement copying smtbx/refinement/weighting_schemes.py -> build/lib/smtbx/refinement copying smtbx/refinement/least_squares.py -> build/lib/smtbx/refinement copying smtbx/refinement/__init__.py -> build/lib/smtbx/refinement creating build/lib/smtbx/absolute_structure copying smtbx/absolute_structure/__init__.py -> build/lib/smtbx/absolute_structure creating build/lib/smtbx/structure_factors copying smtbx/structure_factors/__init__.py -> build/lib/smtbx/structure_factors creating build/lib/smtbx/regression/test_data copying smtbx/regression/test_data/__init__.py -> build/lib/smtbx/regression/test_data creating build/lib/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/__init__.py -> build/lib/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/tst_charge_flipping.py -> build/lib/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/tst_ab_initio_ext.py -> build/lib/smtbx/ab_initio/tests creating build/lib/smtbx/refinement/restraints copying smtbx/refinement/restraints/origin_fixing_restraints.py -> build/lib/smtbx/refinement/restraints copying smtbx/refinement/restraints/adp_restraints.py -> build/lib/smtbx/refinement/restraints copying smtbx/refinement/restraints/__init__.py -> build/lib/smtbx/refinement/restraints creating build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/rigid.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/occupancy.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/fpfdp.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/adp.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/site.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/all.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/__init__.py -> build/lib/smtbx/refinement/constraints creating build/lib/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/hydrogens.py -> build/lib/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/all.py -> build/lib/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/__init__.py -> build/lib/smtbx/refinement/constraints/geometrical creating build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_occupancies.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_direction.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_lbfgs.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_same_group.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_constrained_structure.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_reparametrisation.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/__init__.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_rigid.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_disorder.py -> build/lib/smtbx/refinement/constraints/tests creating build/lib/smtbx/structure_factors/direct copying smtbx/structure_factors/direct/__init__.py -> build/lib/smtbx/structure_factors/direct creating build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/choice_multi.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/path.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/tribool.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/floats.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/tree.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/unit_cell.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/space_group.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/array_label.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/numbers.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/text_base.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/strings.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/misc_ctrls.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/strctrl.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/choice.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/simple_dialogs.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/__init__.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/symop.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/ints.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/boolctrl.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/intctrl.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/floatctrl.py -> build/lib/wxtbx/phil_controls creating build/lib/wxtbx/command_line copying wxtbx/command_line/plan_sad_experiment.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/xtriage.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/plot_anomalous_scattering.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/anomalous_differences_histogram.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/show_file_info.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/pdb_statistics.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/loggraph.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/b_plot.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/__init__.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/pdb_editor.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/wxpython.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/inspect_r_free_flags.py -> build/lib/wxtbx/command_line creating build/lib/wxtbx/plots copying wxtbx/plots/__init__.py -> build/lib/wxtbx/plots copying wxtbx/plots/molprobity.py -> build/lib/wxtbx/plots copying wxtbx/plots/emringer.py -> build/lib/wxtbx/plots creating build/lib/wxtbx/reports copying wxtbx/reports/blast.py -> build/lib/wxtbx/reports copying wxtbx/reports/pdb_symmetry.py -> build/lib/wxtbx/reports copying wxtbx/reports/__init__.py -> build/lib/wxtbx/reports creating build/lib/wxtbx/regression copying wxtbx/regression/tst_imports.py -> build/lib/wxtbx/regression copying wxtbx/regression/_warnings.py -> build/lib/wxtbx/regression copying wxtbx/regression/tst_headless_construct.py -> build/lib/wxtbx/regression copying wxtbx/regression/tst_b_plot.py -> build/lib/wxtbx/regression copying wxtbx/regression/__init__.py -> build/lib/wxtbx/regression copying wxtbx/regression/tst_process_control.py -> build/lib/wxtbx/regression copying wxtbx/regression/_headless_construct_cases.py -> build/lib/wxtbx/regression creating build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/show_platform_info.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/double_overflow.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/gcd.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/lcm.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/divide_by_zero.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/int_overflow.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/inexact.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/segmentation_fault.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/__init__.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/show_environ_usage.py -> build/lib/boost_adaptbx/command_line creating build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/min_cut_max_flow.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/graph_structure_comparison.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/connected_component_algorithm.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/metric.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/utility.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/breadth_first_search.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/maximum_clique.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/__init__.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/clustering_algorithm.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/minimum_cut_enumerate.py -> build/lib/boost_adaptbx/graph creating build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/tuple.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/optional.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/std_pair.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/python.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/__init__.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/rational.py -> build/lib/boost_adaptbx/boost creating build/lib/gltbx/command_line copying gltbx/command_line/try_imports.py -> build/lib/gltbx/command_line copying gltbx/command_line/__init__.py -> build/lib/gltbx/command_line creating build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate_bonds.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_vs_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fmodel.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/remove_outliers.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rotalyze.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_model_distances.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/pdbtools.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/distance_difference.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/density_modification.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/models_as_chains.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/super.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/barbed_wire_analysis.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/arginine_geometry.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rama_z.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/suitename.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/polder.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_vs_sequence.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/reciprocal_space_arrays.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cif_as_mtz.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/reduce_cryoem_resolution.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/plan_sad_experiment.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rebuild_rotarama_cache.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/comparama.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ringer.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mask.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/hbond.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/xmanip.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/sisa.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fetch_pdb.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/chiral_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/verify_mon_lib_data.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mon_lib_cif_triage.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cbetadev.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_to_model_histogram.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/xtrapol8.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/search_pdb_symmetry.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/taam_minus_iam.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cablam.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/xtriage.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_idealization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mtz2map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/undowser2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/prune_model.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_vs_data.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mp_validate_bonds.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/table_one.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/select_best_starting_model.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/tls_analysis.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/atom_valence_simple.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/dynamics.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/maximum_entropy_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/validate_H_cl_app.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ligand_restraints_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/clashscore.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/suitename_old.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/next_gen_residue_typing.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fobs_minus_fobs_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/find_peaks_holes.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/secondary_structure_restraints.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ramalyze.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cc_star.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/sort_hetatms.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/geometry_minimization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/water_b_factors.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/emringer_score.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/debug_riding.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/holton_geometry_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/apply_ncs_to_ligand.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rebuild_cablam_cache.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/next_gen_atom_typing.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/maps.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ss_idealization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/where_is_that_cif_file.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/process_predicted_model.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/angle.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/probe2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ribbons.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/perigee.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/altloc_remediate.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/f000.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/electrons.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/reduce2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/development_aev.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rigid_bond_test.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/massage_data.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fab_elbow_angle.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/undowser.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate_suites.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/grow_density.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/hydrogenate.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/probescore_ligand.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/real_space_diff_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/quantum_interface.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_comparison.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/__init__.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/find_tls_groups.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/matthews.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/pdb_interpretation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fake_f_obs.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rank_scale_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/estimate_bijvoet_ratio.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/tls_as_xyz.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/real_space_correlation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/superpose.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cablam_idealization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/refine_anomalous_substructure.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/show_r_factors_by_shell.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate_puckers.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/molprobity.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/clashscore2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/pdb_atom_selection.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mp_geo.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/kinemage.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/development_fem.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_box.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/validate_ligands.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/r_factor_statistics.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/secondary_structure_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/find_residue_in_pdb.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/validation_summary.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/prepare_pdb_deposition.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/tls.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/nonbonded_overlaps.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_to_structure_factors.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/emringer.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/omegalyze.py -> build/lib/mmtbx/command_line creating build/lib/mmtbx/rotamer copying mmtbx/rotamer/n_dim_table.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/nqh.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/ramachandran_eval.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/ramachandran_eval_deprecated.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/rotamer_eval.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/tst_rotamer_eval.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/__init__.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/graphics.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/sidechain_angles.py -> build/lib/mmtbx/rotamer creating build/lib/mmtbx/den copying mmtbx/den/refinement.py -> build/lib/mmtbx/den copying mmtbx/den/__init__.py -> build/lib/mmtbx/den copying mmtbx/den/plot_weights.py -> build/lib/mmtbx/den creating build/lib/mmtbx/twinning copying mmtbx/twinning/probabalistic_detwinning.py -> build/lib/mmtbx/twinning copying mmtbx/twinning/twin_f_model.py -> build/lib/mmtbx/twinning copying mmtbx/twinning/__init__.py -> build/lib/mmtbx/twinning creating build/lib/mmtbx/masks copying mmtbx/masks/tst_masks.py -> build/lib/mmtbx/masks copying mmtbx/masks/__init__.py -> build/lib/mmtbx/masks copying mmtbx/masks/tst_asu_mask.py -> build/lib/mmtbx/masks creating build/lib/mmtbx/probe copying mmtbx/probe/tst_mmtbx_probe_ext.py -> build/lib/mmtbx/probe copying mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> build/lib/mmtbx/probe copying mmtbx/probe/Helpers.py -> build/lib/mmtbx/probe copying mmtbx/probe/__init__.py -> build/lib/mmtbx/probe copying mmtbx/probe/AtomTypes.py -> build/lib/mmtbx/probe creating build/lib/mmtbx/solvent copying mmtbx/solvent/map_to_water.py -> build/lib/mmtbx/solvent copying mmtbx/solvent/ordered_solvent.py -> build/lib/mmtbx/solvent copying mmtbx/solvent/__init__.py -> build/lib/mmtbx/solvent copying mmtbx/solvent/ensemble_ordered_solvent.py -> build/lib/mmtbx/solvent creating build/lib/mmtbx/reduce copying mmtbx/reduce/InteractionGraph.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/Movers.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/tst_mmtbx_reduce_ext.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/Optimizers.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/__init__.py -> build/lib/mmtbx/reduce creating build/lib/mmtbx/atomic_environment_vectors copying mmtbx/atomic_environment_vectors/__init__.py -> build/lib/mmtbx/atomic_environment_vectors copying mmtbx/atomic_environment_vectors/tst.py -> build/lib/mmtbx/atomic_environment_vectors creating build/lib/mmtbx/maps copying mmtbx/maps/map_model_cc.py -> build/lib/mmtbx/maps copying mmtbx/maps/polder.py -> build/lib/mmtbx/maps copying mmtbx/maps/xtrapol8.py -> build/lib/mmtbx/maps copying mmtbx/maps/fem.py -> build/lib/mmtbx/maps copying mmtbx/maps/fobs_minus_fobs_map.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_correlation.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map_3.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map.py -> build/lib/mmtbx/maps copying mmtbx/maps/correlation.py -> build/lib/mmtbx/maps copying mmtbx/maps/kick.py -> build/lib/mmtbx/maps copying mmtbx/maps/composite_omit_map.py -> build/lib/mmtbx/maps copying mmtbx/maps/__init__.py -> build/lib/mmtbx/maps copying mmtbx/maps/superpose.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map_2.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> build/lib/mmtbx/maps copying mmtbx/maps/mtriage.py -> build/lib/mmtbx/maps copying mmtbx/maps/utils.py -> build/lib/mmtbx/maps creating build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst_segid.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/secondary_structure_params.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/ss_validation.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/regularize_from_pdb.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst_insertion_codes.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/nucleic_acids.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/find_ss_from_ca.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/proteins.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/__init__.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/utils.py -> build/lib/mmtbx/secondary_structure creating build/lib/mmtbx/chemical_components copying mmtbx/chemical_components/cif_parser.py -> build/lib/mmtbx/chemical_components copying mmtbx/chemical_components/__init__.py -> build/lib/mmtbx/chemical_components copying mmtbx/chemical_components/tst.py -> build/lib/mmtbx/chemical_components creating build/lib/mmtbx/geometry copying mmtbx/geometry/asa.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/topology.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/sphere_surface_sampling.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/indexing.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/__init__.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/clash.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/shared_types.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/altloc.py -> build/lib/mmtbx/geometry creating build/lib/mmtbx/sisa copying mmtbx/sisa/__init__.py -> build/lib/mmtbx/sisa creating build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/all_his.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/__init__.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/rotamer_manager.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/sample_rotamers.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/tst.py -> build/lib/mmtbx/idealized_aa_residues creating build/lib/mmtbx/tls copying mmtbx/tls/perm14.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm12.py -> build/lib/mmtbx/tls copying mmtbx/tls/decompose.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm10.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm13.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm11.py -> build/lib/mmtbx/tls copying mmtbx/tls/ladp.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm15.py -> build/lib/mmtbx/tls copying mmtbx/tls/optimise_amplitudes.py -> build/lib/mmtbx/tls copying mmtbx/tls/tools.py -> build/lib/mmtbx/tls copying mmtbx/tls/analysis.py -> build/lib/mmtbx/tls copying mmtbx/tls/__init__.py -> build/lib/mmtbx/tls copying mmtbx/tls/tls_as_xyz.py -> build/lib/mmtbx/tls copying mmtbx/tls/command_line.py -> build/lib/mmtbx/tls copying mmtbx/tls/utils.py -> build/lib/mmtbx/tls creating build/lib/mmtbx/f_model copying mmtbx/f_model/f_model.py -> build/lib/mmtbx/f_model copying mmtbx/f_model/__init__.py -> build/lib/mmtbx/f_model copying mmtbx/f_model/f_model_info.py -> build/lib/mmtbx/f_model creating build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_k.py -> build/lib/mmtbx/ions copying mmtbx/ions/environment.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_geometries.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_parameters.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_utils.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_ca.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_validate_ca.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_ca_svm.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_environment.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_approx_zn.py -> build/lib/mmtbx/ions copying mmtbx/ions/halides.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_validate_mg.py -> build/lib/mmtbx/ions copying mmtbx/ions/__init__.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_mg.py -> build/lib/mmtbx/ions copying mmtbx/ions/geometry.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pickle.py -> build/lib/mmtbx/ions copying mmtbx/ions/identify.py -> build/lib/mmtbx/ions copying mmtbx/ions/build.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_symmetry_axis.py -> build/lib/mmtbx/ions copying mmtbx/ions/utils.py -> build/lib/mmtbx/ions creating build/lib/mmtbx/density_modification copying mmtbx/density_modification/__init__.py -> build/lib/mmtbx/density_modification copying mmtbx/density_modification/tst_density_modification.py -> build/lib/mmtbx/density_modification creating build/lib/mmtbx/polygon copying mmtbx/polygon/tst_polygon_data.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/tst_gui.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/__init__.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/output.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/tst.py -> build/lib/mmtbx/polygon creating build/lib/mmtbx/regression copying mmtbx/regression/tst_clashes.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_box.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_anomalous_substructure.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_find_ncs.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_mtz2map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_rdkit_utils_molecule.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_altloc_chain_break.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_table_one.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_apply_cif_restraints.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_model_vs_sequence.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_multi_residue_class.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_process_predicted_model.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validation_summary.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_metal_link_1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_maps_misc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_origin_ids.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_arginine_geometry.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_command_line_input.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_cc_star.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validate_ligands_4.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_2.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_find_ss_structure_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_fd.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_sampled_model_density.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ordered_solvent.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_rigid_bond_test.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_refine_anomalous_substructure.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce_timeout.py -> build/lib/mmtbx/regression copying mmtbx/regression/make_fake_anomalous_data.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validate_ligands_2.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_msa.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce_custom_bond.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_schrodinger_interface.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_geo_min_restraints_phil.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_adp_restraints.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_utils.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_domains_from_pae.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_no_cryst1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ribbons.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_geometry_minimization.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_regularize_from_pdb.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_isomorphous_difference_misc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_misc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_special_term_at_end.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_ccs.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_2.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_add_h_to_water.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_models_to_from_chains.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_process_predicted_model_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_mmtbx_refinement_wrappers.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce2_no_symmetry.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce_cryoem_resolution.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_prune_model.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ss_validation_long_chainids.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_loop_closure.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validate_ligands_3.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_and_dm.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_regularize_from_pdb_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_altloc_remediate.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_probe.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_map_model_cc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_find_ss_structure.py -> build/lib/mmtbx/regression copying mmtbx/regression/__init__.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_rank_scale_map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_chain_comparison.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_4.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_examples.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_sequence_validation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_scattering_type_registry.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_add_arrows_on_plot.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_scattering_table.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_flipping_his.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_dynamics_cli.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_3.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_alignment.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_real_space_correlation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ligand_interactions.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_model_vs_map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_chain_comparison_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_angle.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce_switch.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ligand_ncs.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_sort_hetatms.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_domains_from_pae_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_map_type_parser.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_holton_geometry_validation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validate_ligands.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_cis_trans_peptide_link.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_psi_phi_extraction.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_minimize_chain.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ml_estimate.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_rdkit_utils_fragmentation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_statistics_output.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_model_map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ringer.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_pdbtools.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_lrv.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_superpose.py -> build/lib/mmtbx/regression creating build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/quantum_restraints_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_c_beta_restraints.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_geo_file_parsing.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/qm_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_ramachandran.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_reference_coordinate2.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/external.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/reference.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_orca_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_replace_in_place.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/c_beta.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/mopac_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/geo_file_parsing.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/base_qm_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/xtb_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/quantum_interface.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/__init__.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/afitt.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_xtb_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_reference_coordinate.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/ramachandran.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/qi_utils.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/orca_manager.py -> build/lib/mmtbx/geometry_restraints creating build/lib/mmtbx/scaling copying mmtbx/scaling/remove_outliers.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/bayesian_estimator.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/relative_wilson.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_xtriage_twin_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/relative_scaling.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/plan_sad_experiment.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/pair_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/twin_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/xtriage.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/pre_scale.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/sigmaa_estimation.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/thorough_outlier_test.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_scaling.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/absence_likelihood.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_outlier.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/massage_twin_detwin_data.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_sigmaa.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/absolute_scaling.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/random_omit.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/data_statistics.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/make_param.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/fa_estimation.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/__init__.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/matthews.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/twmad_scale.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_xtriage.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_bayesian_estimator.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/absences.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_massage_data.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/ta_alpha_beta_calc.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/outlier_plots.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_mean_f_rms_f.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/outlier_rejection.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/mean_f_rms_f.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_plan_sad_experiment.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/basic_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_absences.py -> build/lib/mmtbx/scaling creating build/lib/mmtbx/disorder copying mmtbx/disorder/tst_analyze_model.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/tst_backbone.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/analyze_model.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/backbone.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/__init__.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/tst.py -> build/lib/mmtbx/disorder creating build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/tst_rcsb_entry_request.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/rcsb_entry_request.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/__init__.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/rcsb_web_services.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/tst_rcsb_web_services.py -> build/lib/mmtbx/wwpdb creating build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/pair_interaction.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_04.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_00.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/__init__.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_01.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_02.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_05.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_03.py -> build/lib/mmtbx/pair_interaction creating build/lib/mmtbx/refinement copying mmtbx/refinement/rigid_body.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/flip_peptide_side_chain.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_real_space_simple.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/minimization_ncs_constraints.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/weights_params.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/group.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/energy_monitor.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/weights.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_refinement_flags.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_select_best_starting_model.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/select_best_starting_model.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_rigid_body.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/minimization_monitor.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/adp_refinement.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/minimization.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_occupancy_selections.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/geometry_minimization.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_misc.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_anomalous_scatterer_groups.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/anomalous_scatterer_groups.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_fit_rotamers.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/wrappers.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_group_2.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/print_statistics.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/occupancies.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/__init__.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/orca.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/inspect_tardy_trajectory.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tardy.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_group.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/data.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/targets.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/utils.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/restraints.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/calculators.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/refinement_flags.py -> build/lib/mmtbx/refinement creating build/lib/mmtbx/nci copying mmtbx/nci/hbond.py -> build/lib/mmtbx/nci copying mmtbx/nci/__init__.py -> build/lib/mmtbx/nci copying mmtbx/nci/data_filtering.py -> build/lib/mmtbx/nci copying mmtbx/nci/skew_kurt_plot.py -> build/lib/mmtbx/nci copying mmtbx/nci/tst_hbond.py -> build/lib/mmtbx/nci creating build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_paral_geo.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_5.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_motif.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_glyco_hand.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/server.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_user_supplied_library.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_glyco_coordination.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/conformation_dependent_restraints.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/linking_mixins.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/linking_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/geostd_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/mmtbx_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_correct_hydrogens.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/rotamer_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_linking.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/linking_setup.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_selection.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/cif_types.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/conv_v2_v3.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_neutron_distance.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_3.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/hydrogen_restrictions.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/idealized_aa.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_superpose_ideal.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_cif_triage.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_metal_coordination.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/__init__.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/pdb_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/glyco_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_4.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/bondlength_defaults.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/correct_hydrogen_geometries.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_cif_types.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_all_cif_files.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rotamer_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_chg.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_deuterium_terminii.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_server.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_protein_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/cif_triage.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_2.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rna_dna_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_idealized_aa.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_carbo_linking.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/glyco_chiral_values.py -> build/lib/mmtbx/monomer_library creating build/lib/mmtbx/ligands copying mmtbx/ligands/tst_xtal_screens.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/hierarchy_utils.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/tst_ready_set_utils.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/ready_set_utils.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/chemistry.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/ready_set_basics.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/electrons.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/rdkit_utils.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/__init__.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/tst_electron_scripting.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/xtal_screens.py -> build/lib/mmtbx/ligands creating build/lib/mmtbx/model copying mmtbx/model/model.py -> build/lib/mmtbx/model copying mmtbx/model/__init__.py -> build/lib/mmtbx/model copying mmtbx/model/statistics.py -> build/lib/mmtbx/model copying mmtbx/model/utils.py -> build/lib/mmtbx/model copying mmtbx/model/restraints.py -> build/lib/mmtbx/model creating build/lib/mmtbx/kinemage copying mmtbx/kinemage/tst_validation.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/validation.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/ribbons.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/ribbon_rendering.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/nrubs.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/__init__.py -> build/lib/mmtbx/kinemage creating build/lib/mmtbx/utils copying mmtbx/utils/rotatable_bonds.py -> build/lib/mmtbx/utils copying mmtbx/utils/ntc.py -> build/lib/mmtbx/utils copying mmtbx/utils/fab_elbow_angle.py -> build/lib/mmtbx/utils copying mmtbx/utils/grid2d.py -> build/lib/mmtbx/utils copying mmtbx/utils/__init__.py -> build/lib/mmtbx/utils copying mmtbx/utils/tst_switch_rotamers.py -> build/lib/mmtbx/utils creating build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/omega_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_svl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/mcl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/altloc_weighting.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/hpdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/testing_utils.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_residue_class.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_utils.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/LinkedResidues.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_setup.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_enol_peptide.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_base_class.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_rdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mutli_residue.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_hpdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_02.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/bond_angle_registry.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_03.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/rdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_omega_cdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/metal_coordination_library.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/rotamers.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/check_cdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/__init__.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/nucleotides.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_01.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/omega.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/density_dependent_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/histidines.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/sf4_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/enol_peptide_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/hydrogen_bonding.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl_esd.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/utils.py -> build/lib/mmtbx/conformation_dependent_library creating build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_8.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/specialised_hydrogen_atoms.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/validate_H.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_const_dihedral.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/riding.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_2.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_15.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/connectivity.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/build_hydrogens.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_5.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_2.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_3.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_time.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_7.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_7.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/parameterization.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_6.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_validate_H.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_9.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_4.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_9.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_4.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_14.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_8.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_12.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_1.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_11.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_13.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_3.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_manager.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/reduce_hydrogen.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_6.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/__init__.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_2.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_minimize.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/neutron_utils.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_5.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_10.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_connectivity.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_1.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_5.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_coefficients.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_1.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_3.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_16.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_4.py -> build/lib/mmtbx/hydrogens creating build/lib/mmtbx/rsr copying mmtbx/rsr/__init__.py -> build/lib/mmtbx/rsr copying mmtbx/rsr/tst.py -> build/lib/mmtbx/rsr creating build/lib/mmtbx/building copying mmtbx/building/tst_extend_sidechains_2.py -> build/lib/mmtbx/building copying mmtbx/building/extend_sidechains.py -> build/lib/mmtbx/building copying mmtbx/building/tst_extend_sidechains.py -> build/lib/mmtbx/building copying mmtbx/building/minimize_chain.py -> build/lib/mmtbx/building copying mmtbx/building/loop_idealization.py -> build/lib/mmtbx/building copying mmtbx/building/__init__.py -> build/lib/mmtbx/building copying mmtbx/building/merge_models.py -> build/lib/mmtbx/building copying mmtbx/building/cablam_idealization.py -> build/lib/mmtbx/building creating build/lib/mmtbx/ringer copying mmtbx/ringer/em_rscc.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/tst_em_rscc.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/em_rolling.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/__init__.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/em_scoring.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/tst_emringer.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/emringer.py -> build/lib/mmtbx/ringer creating build/lib/mmtbx/alignment copying mmtbx/alignment/__init__.py -> build/lib/mmtbx/alignment creating build/lib/mmtbx/dynamics copying mmtbx/dynamics/ensemble_cd.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/tst_sa.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/simulated_annealing.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/cartesian_dynamics.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/__init__.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/constants.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/tst_cartesian_dynamics.py -> build/lib/mmtbx/dynamics creating build/lib/mmtbx/ias copying mmtbx/ias/tst_ias.py -> build/lib/mmtbx/ias copying mmtbx/ias/__init__.py -> build/lib/mmtbx/ias creating build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/kbu_refinery.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/scaler.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_mosaic.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/f_model_all_scales.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/example.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/__init__.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_flat_nonuniform.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/example2.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_scaler.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_aniso_scaler.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/mosaic.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> build/lib/mmtbx/bulk_solvent creating build/lib/mmtbx/max_lik copying mmtbx/max_lik/tst_max_lik.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/tst_maxlik.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/max_like_non_uniform.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/maxlik.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/__init__.py -> build/lib/mmtbx/max_lik creating build/lib/mmtbx/ncs copying mmtbx/ncs/ligands.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/cartesian_restraints.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/tncs.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_params.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_search.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_utils.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_restraints_group_list.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/__init__.py -> build/lib/mmtbx/ncs creating build/lib/mmtbx/programs copying mmtbx/programs/rna_validate_bonds.py -> build/lib/mmtbx/programs copying mmtbx/programs/fmodel.py -> build/lib/mmtbx/programs copying mmtbx/programs/rotalyze.py -> build/lib/mmtbx/programs copying mmtbx/programs/pdbtools.py -> build/lib/mmtbx/programs copying mmtbx/programs/barbed_wire_analysis.py -> build/lib/mmtbx/programs copying mmtbx/programs/arginine_geometry.py -> build/lib/mmtbx/programs copying mmtbx/programs/rama_z.py -> build/lib/mmtbx/programs copying mmtbx/programs/suitename.py -> build/lib/mmtbx/programs copying mmtbx/programs/polder.py -> build/lib/mmtbx/programs copying mmtbx/programs/model_vs_sequence.py -> build/lib/mmtbx/programs copying mmtbx/programs/reduce_cryoem_resolution.py -> build/lib/mmtbx/programs copying mmtbx/programs/comparama.py -> build/lib/mmtbx/programs copying mmtbx/programs/mask.py -> build/lib/mmtbx/programs copying mmtbx/programs/pdb_as_cif.py -> build/lib/mmtbx/programs copying mmtbx/programs/hbond.py -> build/lib/mmtbx/programs copying mmtbx/programs/chiral_validation.py -> build/lib/mmtbx/programs copying mmtbx/programs/cbetadev.py -> build/lib/mmtbx/programs copying mmtbx/programs/xtrapol8.py -> build/lib/mmtbx/programs copying mmtbx/programs/taam_minus_iam.py -> build/lib/mmtbx/programs copying mmtbx/programs/cablam.py -> build/lib/mmtbx/programs copying mmtbx/programs/undowser2.py -> build/lib/mmtbx/programs copying mmtbx/programs/mp_validate_bonds.py -> build/lib/mmtbx/programs copying mmtbx/programs/atom_valence_simple.py -> build/lib/mmtbx/programs copying mmtbx/programs/ss_validation.py -> build/lib/mmtbx/programs copying mmtbx/programs/ligand_restraints_validation.py -> build/lib/mmtbx/programs copying mmtbx/programs/clashscore.py -> build/lib/mmtbx/programs copying mmtbx/programs/suitename_old.py -> build/lib/mmtbx/programs copying mmtbx/programs/next_gen_residue_typing.py -> build/lib/mmtbx/programs copying mmtbx/programs/ramalyze.py -> build/lib/mmtbx/programs copying mmtbx/programs/water_b_factors.py -> build/lib/mmtbx/programs copying mmtbx/programs/debug_riding.py -> build/lib/mmtbx/programs copying mmtbx/programs/holton_geometry_validation.py -> build/lib/mmtbx/programs copying mmtbx/programs/elbow_services.py -> build/lib/mmtbx/programs copying mmtbx/programs/next_gen_atom_typing.py -> build/lib/mmtbx/programs copying mmtbx/programs/ss_idealization.py -> build/lib/mmtbx/programs copying mmtbx/programs/process_predicted_model.py -> build/lib/mmtbx/programs copying mmtbx/programs/probe2.py -> build/lib/mmtbx/programs copying mmtbx/programs/ribbons.py -> build/lib/mmtbx/programs copying mmtbx/programs/atom_selection.py -> build/lib/mmtbx/programs copying mmtbx/programs/reduce2.py -> build/lib/mmtbx/programs copying mmtbx/programs/undowser.py -> build/lib/mmtbx/programs copying mmtbx/programs/rna_validate_suites.py -> build/lib/mmtbx/programs copying mmtbx/programs/hydrogenate.py -> build/lib/mmtbx/programs copying mmtbx/programs/probescore_ligand.py -> build/lib/mmtbx/programs copying mmtbx/programs/quantum_interface.py -> build/lib/mmtbx/programs copying mmtbx/programs/__init__.py -> build/lib/mmtbx/programs copying mmtbx/programs/matthews.py -> build/lib/mmtbx/programs copying mmtbx/programs/real_space_correlation.py -> build/lib/mmtbx/programs copying mmtbx/programs/cablam_idealization.py -> build/lib/mmtbx/programs copying mmtbx/programs/rna_validate_puckers.py -> build/lib/mmtbx/programs copying mmtbx/programs/clashscore2.py -> build/lib/mmtbx/programs copying mmtbx/programs/validate_ligands.py -> build/lib/mmtbx/programs copying mmtbx/programs/fetch.py -> build/lib/mmtbx/programs copying mmtbx/programs/rna_validate.py -> build/lib/mmtbx/programs copying mmtbx/programs/prepare_pdb_deposition.py -> build/lib/mmtbx/programs copying mmtbx/programs/nonbonded_overlaps.py -> build/lib/mmtbx/programs copying mmtbx/programs/emringer.py -> build/lib/mmtbx/programs copying mmtbx/programs/omegalyze.py -> build/lib/mmtbx/programs creating build/lib/mmtbx/real_space copying mmtbx/real_space/__init__.py -> build/lib/mmtbx/real_space copying mmtbx/real_space/tst.py -> build/lib/mmtbx/real_space creating build/lib/mmtbx/suitename copying mmtbx/suitename/suitealyze.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suitename.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suiteninput.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/diangle.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suitenamedefs.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/dualparse.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/mainchain.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/transdent.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/__init__.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suites.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suitenout.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suiteninit.py -> build/lib/mmtbx/suitename creating build/lib/mmtbx/validation copying mmtbx/validation/cbd_utils.py -> build/lib/mmtbx/validation copying mmtbx/validation/ligands.py -> build/lib/mmtbx/validation copying mmtbx/validation/rotalyze.py -> build/lib/mmtbx/validation copying mmtbx/validation/barbed_wire_analysis.py -> build/lib/mmtbx/validation copying mmtbx/validation/comprehensive_residue.py -> build/lib/mmtbx/validation copying mmtbx/validation/rama_z.py -> build/lib/mmtbx/validation copying mmtbx/validation/ligand_interactions.py -> build/lib/mmtbx/validation copying mmtbx/validation/fav_lists.py -> build/lib/mmtbx/validation copying mmtbx/validation/comparama.py -> build/lib/mmtbx/validation copying mmtbx/validation/cbetadev.py -> build/lib/mmtbx/validation copying mmtbx/validation/mean_devs_PRO_phi_psi.py -> build/lib/mmtbx/validation copying mmtbx/validation/cablam.py -> build/lib/mmtbx/validation copying mmtbx/validation/undowser2.py -> build/lib/mmtbx/validation copying mmtbx/validation/datasets.py -> build/lib/mmtbx/validation copying mmtbx/validation/mp_validate_bonds.py -> build/lib/mmtbx/validation copying mmtbx/validation/mean_devs_others_phi_psi.py -> build/lib/mmtbx/validation copying mmtbx/validation/clashscore.py -> build/lib/mmtbx/validation copying mmtbx/validation/ramalyze.py -> build/lib/mmtbx/validation copying mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> build/lib/mmtbx/validation copying mmtbx/validation/holton_geometry_validation.py -> build/lib/mmtbx/validation copying mmtbx/validation/sequence.py -> build/lib/mmtbx/validation copying mmtbx/validation/analyze_peptides.py -> build/lib/mmtbx/validation copying mmtbx/validation/undowser.py -> build/lib/mmtbx/validation copying mmtbx/validation/__init__.py -> build/lib/mmtbx/validation copying mmtbx/validation/experimental.py -> build/lib/mmtbx/validation copying mmtbx/validation/waters.py -> build/lib/mmtbx/validation copying mmtbx/validation/model_properties.py -> build/lib/mmtbx/validation copying mmtbx/validation/ensembles.py -> build/lib/mmtbx/validation copying mmtbx/validation/clashscore2.py -> build/lib/mmtbx/validation copying mmtbx/validation/phi_psi_2_data.py -> build/lib/mmtbx/validation copying mmtbx/validation/graphics.py -> build/lib/mmtbx/validation copying mmtbx/validation/chain_comparison.py -> build/lib/mmtbx/validation copying mmtbx/validation/validate_ligands.py -> build/lib/mmtbx/validation copying mmtbx/validation/rna_validate.py -> build/lib/mmtbx/validation copying mmtbx/validation/convert_lists.py -> build/lib/mmtbx/validation copying mmtbx/validation/utils.py -> build/lib/mmtbx/validation copying mmtbx/validation/restraints.py -> build/lib/mmtbx/validation copying mmtbx/validation/omegalyze.py -> build/lib/mmtbx/validation creating build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_1.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_2.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/ss_idealization.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_3.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_io.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/__init__.py -> build/lib/mmtbx/secondary_structure/build creating build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_masks.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_ga.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_input.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_util.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_mtz.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/__init__.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_optimize.py -> build/lib/mmtbx/sisa/optimize creating build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/dump_sites.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/tst_classifier_01.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/__init__.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/tst_classifier_02.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/utils.py -> build/lib/mmtbx/ions/svm creating build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_as_xyz.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_utils.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_get_t_scheme.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_analysis.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/__init__.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_refinement_fft.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> build/lib/mmtbx/regression/tls creating build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_utils_merge_models.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_2.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_merge.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_dedeuterate.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_cart_ref_restraints.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_neutralize_scatterers.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_biomt_mtrix.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_ramachandran.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_symmetry.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_pairs_within.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_mtrix.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/__init__.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_get_vdw_radii.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_ncs.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_tors_ref_restraints.py -> build/lib/mmtbx/regression/model creating build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_search_flips.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_restraints.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_utils.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_search.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/__init__.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> build/lib/mmtbx/regression/ncs creating build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/__init__.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/utils.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints creating build/lib/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> build/lib/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> build/lib/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/__init__.py -> build/lib/mmtbx/refinement/ensemble_refinement creating build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_1.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/rigid_body.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_water.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/occupancy.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/explode_and_refine.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/individual_sites.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_6.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_small_molecule.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_1.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_rigid_body.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_weight.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_selection.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_1H.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_2.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_4.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_1.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/adp.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_0H.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_his.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_3.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_residues.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_0.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_3.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_5.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_5.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_3.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_7.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/__init__.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_4.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_2.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_water.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_1H.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_6.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_monitor.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/weight.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_residue.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_2.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/utils.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py -> build/lib/mmtbx/refinement/real_space creating build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/ccd.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/berkeley_ramalyze.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/starting_conformations.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/__init__.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/utils.py -> build/lib/mmtbx/building/loop_closure creating build/lib/mmtbx/building/ligands copying mmtbx/building/ligands/tst_00.py -> build/lib/mmtbx/building/ligands copying mmtbx/building/ligands/lifi.py -> build/lib/mmtbx/building/ligands copying mmtbx/building/ligands/__init__.py -> build/lib/mmtbx/building/ligands creating build/lib/mmtbx/validation/ramachandran copying mmtbx/validation/ramachandran/__init__.py -> build/lib/mmtbx/validation/ramachandran copying mmtbx/validation/ramachandran/convert_from_text.py -> build/lib/mmtbx/validation/ramachandran creating build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_waters.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_4.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_clashscore_2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rama_z_02.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_validate_bonds.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rna_validate.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cablam.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze_rare.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_restraints.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_utils.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_5.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_experimental.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_do_flips_clashscore.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_1.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_model_properties.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_find_region_max_value.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_barbed_wire_analysis.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo_endtoend.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_omegalyze.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cablam_2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rotalyze.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cbetadev_02.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_arguments.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_suitename.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_symmetry_SS.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/__init__.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_undowser2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_3.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_clashscore.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rama_z_01.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_undowser.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_keep_hydrogens.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cbetadev.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/run_restraints.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_chiral_validation.py -> build/lib/mmtbx/validation/regression creating build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/percentile_clashscore.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/kinemage_templates.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/probescore_ligand.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/__init__.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/percentile_mpscore.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/mp_geo.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/table_from_json.py -> build/lib/mmtbx/validation/molprobity creating build/lib/fable/command_line copying fable/command_line/show_calls.py -> build/lib/fable/command_line copying fable/command_line/split.py -> build/lib/fable/command_line copying fable/command_line/cout.py -> build/lib/fable/command_line copying fable/command_line/read.py -> build/lib/fable/command_line copying fable/command_line/insert_write_at_start_of_each_procedure.py -> build/lib/fable/command_line copying fable/command_line/fem_include_search_paths.py -> build/lib/fable/command_line copying fable/command_line/__init__.py -> build/lib/fable/command_line creating build/lib/rstbx/command_line copying rstbx/command_line/simage.solver.py -> build/lib/rstbx/command_line copying rstbx/command_line/simage.explore_completeness.py -> build/lib/rstbx/command_line copying rstbx/command_line/viewer.py -> build/lib/rstbx/command_line copying rstbx/command_line/slip_viewer.py -> build/lib/rstbx/command_line copying rstbx/command_line/simage.create.py -> build/lib/rstbx/command_line copying rstbx/command_line/simage.wx_display.py -> build/lib/rstbx/command_line copying rstbx/command_line/__init__.py -> build/lib/rstbx/command_line copying rstbx/command_line/index.py -> build/lib/rstbx/command_line copying rstbx/command_line/example_viewer.py -> build/lib/rstbx/command_line creating build/lib/rstbx/symmetry copying rstbx/symmetry/subgroup.py -> build/lib/rstbx/symmetry copying rstbx/symmetry/__init__.py -> build/lib/rstbx/symmetry copying rstbx/symmetry/sgtbx_adaptor.py -> build/lib/rstbx/symmetry creating build/lib/rstbx/dps_core copying rstbx/dps_core/tst_iotbx_converter.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/cell_assessment.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/constrainment.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/basis_choice.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/lepage.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/__init__.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/sampling.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/zuoreduction.py -> build/lib/rstbx/dps_core creating build/lib/rstbx/bandpass copying rstbx/bandpass/simulated_annealing.py -> build/lib/rstbx/bandpass copying rstbx/bandpass/__init__.py -> build/lib/rstbx/bandpass creating build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2a.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2_positions.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/ersatz_misset.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2_positions_idx.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/compare_mosflm_xds.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2_validate.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/__init__.py -> build/lib/rstbx/bpcx creating build/lib/rstbx/outlier_spots copying rstbx/outlier_spots/fit_distribution.py -> build/lib/rstbx/outlier_spots copying rstbx/outlier_spots/__init__.py -> build/lib/rstbx/outlier_spots creating build/lib/rstbx/new_horizons copying rstbx/new_horizons/spot_shape.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/speckfinder.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/pixel_spread.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/stats_index.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/__init__.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/oscillation_shots.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/index.py -> build/lib/rstbx/new_horizons creating build/lib/rstbx/simulation copying rstbx/simulation/sim_utils.py -> build/lib/rstbx/simulation copying rstbx/simulation/tst_xfel1_simple.py -> build/lib/rstbx/simulation copying rstbx/simulation/sim_pdf.py -> build/lib/rstbx/simulation copying rstbx/simulation/__init__.py -> build/lib/rstbx/simulation copying rstbx/simulation/constants.py -> build/lib/rstbx/simulation creating build/lib/rstbx/diffraction copying rstbx/diffraction/tst_predict.py -> build/lib/rstbx/diffraction copying rstbx/diffraction/tst_partial_derivatives.py -> build/lib/rstbx/diffraction copying rstbx/diffraction/tst_ewald_sphere.py -> build/lib/rstbx/diffraction copying rstbx/diffraction/__init__.py -> build/lib/rstbx/diffraction creating build/lib/rstbx/dials_core copying rstbx/dials_core/integration_core.py -> build/lib/rstbx/dials_core copying rstbx/dials_core/__init__.py -> build/lib/rstbx/dials_core creating build/lib/rstbx/array_family copying rstbx/array_family/flex.py -> build/lib/rstbx/array_family copying rstbx/array_family/__init__.py -> build/lib/rstbx/array_family creating build/lib/rstbx/phil copying rstbx/phil/scope.py -> build/lib/rstbx/phil copying rstbx/phil/__init__.py -> build/lib/rstbx/phil copying rstbx/phil/preferences.py -> build/lib/rstbx/phil copying rstbx/phil/phil_preferences.py -> build/lib/rstbx/phil creating build/lib/rstbx/apps copying rstbx/apps/spot_markup.py -> build/lib/rstbx/apps copying rstbx/apps/dual_resolution_helpers.py -> build/lib/rstbx/apps copying rstbx/apps/slip_helpers.py -> build/lib/rstbx/apps copying rstbx/apps/__init__.py -> build/lib/rstbx/apps creating build/lib/rstbx/cftbx copying rstbx/cftbx/tst_coordinate_frame_converter.py -> build/lib/rstbx/cftbx copying rstbx/cftbx/coordinate_frame_converter.py -> build/lib/rstbx/cftbx copying rstbx/cftbx/coordinate_frame_helpers.py -> build/lib/rstbx/cftbx copying rstbx/cftbx/__init__.py -> build/lib/rstbx/cftbx creating build/lib/rstbx/simage copying rstbx/simage/run_labelit_index.py -> build/lib/rstbx/simage copying rstbx/simage/refine_uc_cr.py -> build/lib/rstbx/simage copying rstbx/simage/explore_completeness.py -> build/lib/rstbx/simage copying rstbx/simage/run_spotfinder.py -> build/lib/rstbx/simage copying rstbx/simage/integrate_crude.py -> build/lib/rstbx/simage copying rstbx/simage/create.py -> build/lib/rstbx/simage copying rstbx/simage/__init__.py -> build/lib/rstbx/simage copying rstbx/simage/solver.py -> build/lib/rstbx/simage copying rstbx/simage/tst.py -> build/lib/rstbx/simage copying rstbx/simage/wx_display.py -> build/lib/rstbx/simage creating build/lib/rstbx/viewer copying rstbx/viewer/pixels3d.py -> build/lib/rstbx/viewer copying rstbx/viewer/integration.py -> build/lib/rstbx/viewer copying rstbx/viewer/controls.py -> build/lib/rstbx/viewer copying rstbx/viewer/spotfinder_wrap.py -> build/lib/rstbx/viewer copying rstbx/viewer/calibration_frame.py -> build/lib/rstbx/viewer copying rstbx/viewer/calibration.py -> build/lib/rstbx/viewer copying rstbx/viewer/processing.py -> build/lib/rstbx/viewer copying rstbx/viewer/display.py -> build/lib/rstbx/viewer copying rstbx/viewer/results_base.py -> build/lib/rstbx/viewer copying rstbx/viewer/indexing.py -> build/lib/rstbx/viewer copying rstbx/viewer/__init__.py -> build/lib/rstbx/viewer copying rstbx/viewer/drivers.py -> build/lib/rstbx/viewer copying rstbx/viewer/tst.py -> build/lib/rstbx/viewer copying rstbx/viewer/dataset.py -> build/lib/rstbx/viewer copying rstbx/viewer/frame.py -> build/lib/rstbx/viewer copying rstbx/viewer/spotfinder_frame.py -> build/lib/rstbx/viewer creating build/lib/rstbx/detectors copying rstbx/detectors/silicon.py -> build/lib/rstbx/detectors copying rstbx/detectors/__init__.py -> build/lib/rstbx/detectors creating build/lib/rstbx/sublattice_support copying rstbx/sublattice_support/tst_sublattice.py -> build/lib/rstbx/sublattice_support copying rstbx/sublattice_support/__init__.py -> build/lib/rstbx/sublattice_support copying rstbx/sublattice_support/change_basis.py -> build/lib/rstbx/sublattice_support creating build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/ring_frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/tile_generation.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/uc_frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/slip_display.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/slip_viewer_image_factory.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/pyslip.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/calibration_frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/__init__.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/score_frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/example_frame_plugin_hidden.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/frame.py -> build/lib/rstbx/slip_viewer creating build/lib/rstbx/indexing copying rstbx/indexing/do_index.py -> build/lib/rstbx/indexing copying rstbx/indexing/__init__.py -> build/lib/rstbx/indexing copying rstbx/indexing/tst_auto_monoscan.py -> build/lib/rstbx/indexing copying rstbx/indexing/tst_dataset1.py -> build/lib/rstbx/indexing creating build/lib/rstbx/indexing_api copying rstbx/indexing_api/test_dps.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/lattice.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/tools.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/force_cell.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/basis_choice.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/nearest_neighbor.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/__init__.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/sampling.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/outlier_procedure.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/outlier_detection.py -> build/lib/rstbx/indexing_api creating build/lib/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/g_gradients.py -> build/lib/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/__init__.py -> build/lib/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/parameter_reduction.py -> build/lib/rstbx/symmetry/constraints creating build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/instrument_specifics.py -> build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/tst_detector_model.py -> build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/__init__.py -> build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/detector.py -> build/lib/rstbx/bpcx/detector_model creating build/lib/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/tst_utils_clustering.py -> build/lib/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/__init__.py -> build/lib/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> build/lib/rstbx/diffraction/fastbragg creating build/lib/rstbx/apps/stills copying rstbx/apps/stills/stills_integration.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/dials_refinement_preceding_integration.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/simple_integration.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/util.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/__init__.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> build/lib/rstbx/apps/stills creating build/lib/spotfinder/command_line copying spotfinder/command_line/image_viewer.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/thin_client.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/signal_strength.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/sweep_strength.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/__init__.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/find_active_area.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/mp_spotfinder_server_read_file.py -> build/lib/spotfinder/command_line creating build/lib/spotfinder/math_support copying spotfinder/math_support/sphere_formulae.py -> build/lib/spotfinder/math_support copying spotfinder/math_support/__init__.py -> build/lib/spotfinder/math_support creating build/lib/spotfinder/core_toolbox copying spotfinder/core_toolbox/close_spots_detail.py -> build/lib/spotfinder/core_toolbox copying spotfinder/core_toolbox/__init__.py -> build/lib/spotfinder/core_toolbox creating build/lib/spotfinder/diffraction copying spotfinder/diffraction/imagefiles.py -> build/lib/spotfinder/diffraction copying spotfinder/diffraction/__init__.py -> build/lib/spotfinder/diffraction copying spotfinder/diffraction/geometry.py -> build/lib/spotfinder/diffraction creating build/lib/spotfinder/applications copying spotfinder/applications/image_viewer.py -> build/lib/spotfinder/applications copying spotfinder/applications/signal_strength.py -> build/lib/spotfinder/applications copying spotfinder/applications/stats_distl.py -> build/lib/spotfinder/applications copying spotfinder/applications/wrappers.py -> build/lib/spotfinder/applications copying spotfinder/applications/practical_heuristics.py -> build/lib/spotfinder/applications copying spotfinder/applications/__init__.py -> build/lib/spotfinder/applications creating build/lib/spotfinder/array_family copying spotfinder/array_family/flex.py -> build/lib/spotfinder/array_family copying spotfinder/array_family/__init__.py -> build/lib/spotfinder/array_family creating build/lib/spotfinder/dxtbx_toolbox copying spotfinder/dxtbx_toolbox/practical_heuristics.py -> build/lib/spotfinder/dxtbx_toolbox copying spotfinder/dxtbx_toolbox/__init__.py -> build/lib/spotfinder/dxtbx_toolbox creating build/lib/spotfinder/servers copying spotfinder/servers/apache.py -> build/lib/spotfinder/servers copying spotfinder/servers/apache_dials.py -> build/lib/spotfinder/servers copying spotfinder/servers/apache_utils.py -> build/lib/spotfinder/servers copying spotfinder/servers/apache_bcsb.py -> build/lib/spotfinder/servers copying spotfinder/servers/thin_client.py -> build/lib/spotfinder/servers copying spotfinder/servers/spotfinder_server_read_file.py -> build/lib/spotfinder/servers copying spotfinder/servers/spotfinder_server_client_push.py -> build/lib/spotfinder/servers copying spotfinder/servers/general_client_example.py -> build/lib/spotfinder/servers copying spotfinder/servers/bcsb_client_example.py -> build/lib/spotfinder/servers copying spotfinder/servers/specific_client_example.py -> build/lib/spotfinder/servers copying spotfinder/servers/multipart_encoder.py -> build/lib/spotfinder/servers copying spotfinder/servers/pilatus_client.py -> build/lib/spotfinder/servers copying spotfinder/servers/adsc_client.py -> build/lib/spotfinder/servers copying spotfinder/servers/__init__.py -> build/lib/spotfinder/servers copying spotfinder/servers/mp_spotfinder_server_read_file.py -> build/lib/spotfinder/servers copying spotfinder/servers/mp_spotfinder_server_is_alive.py -> build/lib/spotfinder/servers creating build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/correction_vector_plot.py -> build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/cxi_phil.py -> build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/__init__.py -> build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/cxi_run3.py -> build/lib/spotfinder/applications/xfel creating build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/__init__.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/ice_nztt.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/spotreporter.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/method2_resolution.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/ice2.py -> build/lib/spotfinder/applications/heuristic_tbx creating build/lib/iotbx/command_line copying iotbx/command_line/shelx.as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif.as_miller_arrays.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_remediator.py -> build/lib/iotbx/command_line copying iotbx/command_line/simple_map_coefficients.py -> build/lib/iotbx/command_line copying iotbx/command_line/split_data_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/sort_atoms.py -> build/lib/iotbx/command_line copying iotbx/command_line/french_wilson.py -> build/lib/iotbx/command_line copying iotbx/command_line/build_phil_cache.py -> build/lib/iotbx/command_line copying iotbx/command_line/phil.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_as_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/show_distances.py -> build/lib/iotbx/command_line copying iotbx/command_line/detector_image_as_png.py -> build/lib/iotbx/command_line copying iotbx/command_line/explore_metric_symmetry.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.superpose_centers_of_mass.py -> build/lib/iotbx/command_line copying iotbx/command_line/flip_symmetric_amino_acids.py -> build/lib/iotbx/command_line copying iotbx/command_line/unique_with_biomt.py -> build/lib/iotbx/command_line copying iotbx/command_line/r_free_flags_completion_simple.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_cif_conversion.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_file_converter.py -> build/lib/iotbx/command_line copying iotbx/command_line/blast_pdb.py -> build/lib/iotbx/command_line copying iotbx/command_line/get_pubmed_citation.py -> build/lib/iotbx/command_line copying iotbx/command_line/lattice_symmetry.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns.sdb_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns.transfer_crystal_symmetry.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_statistics.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_labels_comparison.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_as_fasta.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_labels_diff.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif.as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/reindex.py -> build/lib/iotbx/command_line copying iotbx/command_line/patterson_map.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif_as_pdb.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_get_citation.py -> build/lib/iotbx/command_line copying iotbx/command_line/r_free_flags_accumulation.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_file_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.print_sequence.py -> build/lib/iotbx/command_line copying iotbx/command_line/dano_as_amplitudes.py -> build/lib/iotbx/command_line copying iotbx/command_line/poscar_as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns_as_mtz.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_add_conformations.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.box_around_molecule.py -> build/lib/iotbx/command_line copying iotbx/command_line/dtrek.to_cns.py -> build/lib/iotbx/command_line copying iotbx/command_line/mtz_as_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.join_fragment_files.py -> build/lib/iotbx/command_line copying iotbx/command_line/show_systematic_absences.py -> build/lib/iotbx/command_line copying iotbx/command_line/mtz.dump.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.superpose_atoms_by_name.py -> build/lib/iotbx/command_line copying iotbx/command_line/r_free_flags_as_cns.py -> build/lib/iotbx/command_line copying iotbx/command_line/__init__.py -> build/lib/iotbx/command_line copying iotbx/command_line/mtrix_reconstruction.py -> build/lib/iotbx/command_line copying iotbx/command_line/effective_resolution.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_file_editor.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.b_factor_stats.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif.validate.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/biomt_reconstruction.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns.reflection_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/cbf_read.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.insert_scale_records.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_show_connectivity.py -> build/lib/iotbx/command_line copying iotbx/command_line/shelx.dump_as_python.py -> build/lib/iotbx/command_line copying iotbx/command_line/emma.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_split_models.py -> build/lib/iotbx/command_line copying iotbx/command_line/file_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/merging_statistics.py -> build/lib/iotbx/command_line copying iotbx/command_line/export_scalepack_unmerged.py -> build/lib/iotbx/command_line copying iotbx/command_line/csv_as_mtz.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.hierarchy.py -> build/lib/iotbx/command_line copying iotbx/command_line/crystal_symmetry_from_any.py -> build/lib/iotbx/command_line copying iotbx/command_line/xplor.map.show_summary.py -> build/lib/iotbx/command_line copying iotbx/command_line/shelx.as_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/distance_least_squares.py -> build/lib/iotbx/command_line copying iotbx/command_line/symmetry_search.py -> build/lib/iotbx/command_line creating build/lib/iotbx/examples copying iotbx/examples/pdb_hierarchy.py -> build/lib/iotbx/examples copying iotbx/examples/mtz_free_flipper.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_symmetry_copies.py -> build/lib/iotbx/examples copying iotbx/examples/recalculate_phenix_refine_r_factors.py -> build/lib/iotbx/examples copying iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> build/lib/iotbx/examples copying iotbx/examples/tst_mtz_free_flipper.py -> build/lib/iotbx/examples copying iotbx/examples/libtbx_phil_examples.py -> build/lib/iotbx/examples copying iotbx/examples/direct_methods_light.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_tardy_conf_sampling_simple.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_to_map_simple.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_shake.py -> build/lib/iotbx/examples copying iotbx/examples/pdbx_mmcif_tutorial.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_split_chains.py -> build/lib/iotbx/examples copying iotbx/examples/__init__.py -> build/lib/iotbx/examples copying iotbx/examples/prepare_model_for_rsr.py -> build/lib/iotbx/examples copying iotbx/examples/mtz_convert_free_to_work.py -> build/lib/iotbx/examples creating build/lib/iotbx/shelx copying iotbx/shelx/parsers.py -> build/lib/iotbx/shelx copying iotbx/shelx/tst_writer.py -> build/lib/iotbx/shelx copying iotbx/shelx/tst_lex_parse_build.py -> build/lib/iotbx/shelx copying iotbx/shelx/lexer.py -> build/lib/iotbx/shelx copying iotbx/shelx/hklf.py -> build/lib/iotbx/shelx copying iotbx/shelx/tst_fvar_encoding.py -> build/lib/iotbx/shelx copying iotbx/shelx/tokens.py -> build/lib/iotbx/shelx copying iotbx/shelx/fvar_encoding.py -> build/lib/iotbx/shelx copying iotbx/shelx/writer.py -> build/lib/iotbx/shelx copying iotbx/shelx/tst_hklf.py -> build/lib/iotbx/shelx copying iotbx/shelx/__init__.py -> build/lib/iotbx/shelx copying iotbx/shelx/crystal_symmetry_from_ins.py -> build/lib/iotbx/shelx copying iotbx/shelx/write_ins.py -> build/lib/iotbx/shelx copying iotbx/shelx/errors.py -> build/lib/iotbx/shelx copying iotbx/shelx/fcf.py -> build/lib/iotbx/shelx creating build/lib/iotbx/dtrek copying iotbx/dtrek/reflnlist_reader.py -> build/lib/iotbx/dtrek copying iotbx/dtrek/__init__.py -> build/lib/iotbx/dtrek copying iotbx/dtrek/crystal_symmetry_from_ref.py -> build/lib/iotbx/dtrek copying iotbx/dtrek/dtrek_symmetry_dict.py -> build/lib/iotbx/dtrek creating build/lib/iotbx/fullprof copying iotbx/fullprof/read_pcr.py -> build/lib/iotbx/fullprof copying iotbx/fullprof/write_pcr.py -> build/lib/iotbx/fullprof copying iotbx/fullprof/__init__.py -> build/lib/iotbx/fullprof creating build/lib/iotbx/file_io copying iotbx/file_io/reader.py -> build/lib/iotbx/file_io copying iotbx/file_io/text_detection.py -> build/lib/iotbx/file_io copying iotbx/file_io/detection.py -> build/lib/iotbx/file_io copying iotbx/file_io/__init__.py -> build/lib/iotbx/file_io copying iotbx/file_io/_maps.py -> build/lib/iotbx/file_io creating build/lib/iotbx/xds copying iotbx/xds/xparm.py -> build/lib/iotbx/xds copying iotbx/xds/xds_inp.py -> build/lib/iotbx/xds copying iotbx/xds/gain_cbf.py -> build/lib/iotbx/xds copying iotbx/xds/integrate_hkl.py -> build/lib/iotbx/xds copying iotbx/xds/spot_xds.py -> build/lib/iotbx/xds copying iotbx/xds/blank_cbf.py -> build/lib/iotbx/xds copying iotbx/xds/__init__.py -> build/lib/iotbx/xds copying iotbx/xds/geometry.py -> build/lib/iotbx/xds copying iotbx/xds/read_ascii.py -> build/lib/iotbx/xds copying iotbx/xds/correction.py -> build/lib/iotbx/xds copying iotbx/xds/xds_cbf.py -> build/lib/iotbx/xds copying iotbx/xds/crystal_symmetry_from_hkl.py -> build/lib/iotbx/xds creating build/lib/iotbx/ccp4_map copying iotbx/ccp4_map/__init__.py -> build/lib/iotbx/ccp4_map copying iotbx/ccp4_map/tst.py -> build/lib/iotbx/ccp4_map copying iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> build/lib/iotbx/ccp4_map creating build/lib/iotbx/xplor copying iotbx/xplor/tst_xplormap.py -> build/lib/iotbx/xplor copying iotbx/xplor/crystal_symmetry_from_map.py -> build/lib/iotbx/xplor copying iotbx/xplor/map.py -> build/lib/iotbx/xplor copying iotbx/xplor/__init__.py -> build/lib/iotbx/xplor copying iotbx/xplor/ext.py -> build/lib/iotbx/xplor creating build/lib/iotbx/regression copying iotbx/regression/tst_file_io.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_statistics.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_call_consistency.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_4.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_manager_wrapping.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_link_records.py -> build/lib/iotbx/regression copying iotbx/regression/tst_generate_n_char_string.py -> build/lib/iotbx/regression copying iotbx/regression/tst_add_conformations.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_2.py -> build/lib/iotbx/regression copying iotbx/regression/tst_wildcard.py -> build/lib/iotbx/regression copying iotbx/regression/tst_group_rounding.py -> build/lib/iotbx/regression copying iotbx/regression/tst_atom_selections_10k.py -> build/lib/iotbx/regression copying iotbx/regression/tst_cif_1.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_2.py -> build/lib/iotbx/regression copying iotbx/regression/tst_simple_parser.py -> build/lib/iotbx/regression copying iotbx/regression/tst_file_reader.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_file_editor.py -> build/lib/iotbx/regression copying iotbx/regression/tst_show_systematic_absences.py -> build/lib/iotbx/regression copying iotbx/regression/tst_split_models.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_input.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_4.py -> build/lib/iotbx/regression copying iotbx/regression/tst_cli_parser.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mrc_io.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_3.py -> build/lib/iotbx/regression copying iotbx/regression/tst_patterson.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_segids.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_copy_select.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_1.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> build/lib/iotbx/regression copying iotbx/regression/tst_simple_map_coefficients.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_as_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_manager.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdbx_mmcif_tutorial.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_cif_cells.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mtz_as_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_fetch.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_pdb_v3.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_3.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_local_resolution_10.py -> build/lib/iotbx/regression copying iotbx/regression/tst_phil.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_multimodel.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_file_reader.py -> build/lib/iotbx/regression copying iotbx/regression/tst_bioinformatics.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_occupancies_rounding.py -> build/lib/iotbx/regression copying iotbx/regression/tst_box_around_molecule.py -> build/lib/iotbx/regression copying iotbx/regression/tst_symmetry.py -> build/lib/iotbx/regression copying iotbx/regression/tst_export_scalepack_unmerged.py -> build/lib/iotbx/regression copying iotbx/regression/tst_miller_sort_asu.py -> build/lib/iotbx/regression copying iotbx/regression/tst_all_chain_ids.py -> build/lib/iotbx/regression copying iotbx/regression/tst_split_data_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_sort_atoms.py -> build/lib/iotbx/regression copying iotbx/regression/__init__.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_manager_2.py -> build/lib/iotbx/regression copying iotbx/regression/tst_examples.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_file_utils.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager.py -> build/lib/iotbx/regression copying iotbx/regression/tst_merging_statistics.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_as_fasta.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_cif_inputs.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> build/lib/iotbx/regression copying iotbx/regression/tst_text_detection.py -> build/lib/iotbx/regression copying iotbx/regression/tst_poscar.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py -> build/lib/iotbx/regression copying iotbx/regression/tst_csv_utils.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reindex.py -> build/lib/iotbx/regression copying iotbx/regression/tst_data_manager.py -> build/lib/iotbx/regression copying iotbx/regression/tst_selected_hierarchy_flip.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_altlocs.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_restraints_merge.py -> build/lib/iotbx/regression copying iotbx/regression/tst_xray_scale.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_to_from_hierarchy.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_id_str.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> build/lib/iotbx/regression copying iotbx/regression/tst_data_plots.py -> build/lib/iotbx/regression copying iotbx/regression/tst_phases.py -> build/lib/iotbx/regression copying iotbx/regression/tst_lattice_symmetry.py -> build/lib/iotbx/regression copying iotbx/regression/tst_crystal_symmetry_from_any.py -> build/lib/iotbx/regression copying iotbx/regression/utils.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_tools.py -> build/lib/iotbx/regression copying iotbx/regression/tst_extract_xtal_data.py -> build/lib/iotbx/regression copying iotbx/regression/tst_cif_as_pdb_1atom.py -> build/lib/iotbx/regression creating build/lib/iotbx/data_manager copying iotbx/data_manager/model.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/phil.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/ncs_spec.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/sequence.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/common.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/json.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/miller_array.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/real_map.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/yaml.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/__init__.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/restraint.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/map_coefficients.py -> build/lib/iotbx/data_manager creating build/lib/iotbx/PrettyPrint copying iotbx/PrettyPrint/tables.py -> build/lib/iotbx/PrettyPrint copying iotbx/PrettyPrint/__init__.py -> build/lib/iotbx/PrettyPrint creating build/lib/iotbx/dsn6 copying iotbx/dsn6/__init__.py -> build/lib/iotbx/dsn6 copying iotbx/dsn6/tst.py -> build/lib/iotbx/dsn6 creating build/lib/iotbx/cif copying iotbx/cif/citations.py -> build/lib/iotbx/cif copying iotbx/cif/model.py -> build/lib/iotbx/cif copying iotbx/cif/builders.py -> build/lib/iotbx/cif copying iotbx/cif/validation.py -> build/lib/iotbx/cif copying iotbx/cif/restraint_file_merge.py -> build/lib/iotbx/cif copying iotbx/cif/__init__.py -> build/lib/iotbx/cif copying iotbx/cif/geometry.py -> build/lib/iotbx/cif copying iotbx/cif/errors.py -> build/lib/iotbx/cif copying iotbx/cif/crystal_symmetry_from_cif.py -> build/lib/iotbx/cif copying iotbx/cif/restraints.py -> build/lib/iotbx/cif copying iotbx/cif/cod_tools.py -> build/lib/iotbx/cif creating build/lib/iotbx/solve copying iotbx/solve/crystal_symmetry_from_inp.py -> build/lib/iotbx/solve copying iotbx/solve/fpfm_reader.py -> build/lib/iotbx/solve copying iotbx/solve/__init__.py -> build/lib/iotbx/solve creating build/lib/iotbx/mtz copying iotbx/mtz/tst_miller_dict.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_unmerged.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_extract_from_symmetry_lib.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_dano.py -> build/lib/iotbx/mtz copying iotbx/mtz/extract_from_symmetry_lib.py -> build/lib/iotbx/mtz copying iotbx/mtz/crystal_symmetry_from_mtz.py -> build/lib/iotbx/mtz copying iotbx/mtz/__init__.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_ext.py -> build/lib/iotbx/mtz creating build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/pdb_info.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/pubmed.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/local_blast.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/xmlbuild.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/ncbi_blast_xml.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/ebi_wu_blast_xml.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/homologues.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/__init__.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/alignment_as_hsearch.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/structure.py -> build/lib/iotbx/bioinformatics creating build/lib/iotbx/scalepack copying iotbx/scalepack/tst_merge.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/tst_no_merge_original_index.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/merge.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/no_merge_original_index.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/space_group_dictionary.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/__init__.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/crystal_symmetry_from_hkl.py -> build/lib/iotbx/scalepack creating build/lib/iotbx/detectors copying iotbx/detectors/tst_adsc.py -> build/lib/iotbx/detectors copying iotbx/detectors/macscience.py -> build/lib/iotbx/detectors copying iotbx/detectors/dtrek.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_py_cbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_cbf_comp_read_meth.py -> build/lib/iotbx/detectors copying iotbx/detectors/cbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/test_mar.py -> build/lib/iotbx/detectors copying iotbx/detectors/detectorbase.py -> build/lib/iotbx/detectors copying iotbx/detectors/adsc.py -> build/lib/iotbx/detectors copying iotbx/detectors/noir.py -> build/lib/iotbx/detectors copying iotbx/detectors/edf.py -> build/lib/iotbx/detectors copying iotbx/detectors/pilatus_slice.py -> build/lib/iotbx/detectors copying iotbx/detectors/raxisbase.py -> build/lib/iotbx/detectors copying iotbx/detectors/adsc_module.py -> build/lib/iotbx/detectors copying iotbx/detectors/mar.py -> build/lib/iotbx/detectors copying iotbx/detectors/adsc_minicbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_detectors.py -> build/lib/iotbx/detectors copying iotbx/detectors/generic_detector.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_debug_write.py -> build/lib/iotbx/detectors copying iotbx/detectors/eiger.py -> build/lib/iotbx/detectors copying iotbx/detectors/saturn.py -> build/lib/iotbx/detectors copying iotbx/detectors/beam_center_convention.py -> build/lib/iotbx/detectors copying iotbx/detectors/pilatus_minicbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/eiger_minicbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/__init__.py -> build/lib/iotbx/detectors copying iotbx/detectors/hamamatsu.py -> build/lib/iotbx/detectors copying iotbx/detectors/url_support.py -> build/lib/iotbx/detectors copying iotbx/detectors/test_raxis2.py -> build/lib/iotbx/detectors copying iotbx/detectors/raxis.py -> build/lib/iotbx/detectors copying iotbx/detectors/bruker.py -> build/lib/iotbx/detectors copying iotbx/detectors/marIP.py -> build/lib/iotbx/detectors copying iotbx/detectors/active_area_filter.py -> build/lib/iotbx/detectors copying iotbx/detectors/raxis_nonsquare.py -> build/lib/iotbx/detectors copying iotbx/detectors/image_from_http_request.py -> build/lib/iotbx/detectors copying iotbx/detectors/cspad_detector_formats.py -> build/lib/iotbx/detectors copying iotbx/detectors/npy.py -> build/lib/iotbx/detectors creating build/lib/iotbx/gui_tools copying iotbx/gui_tools/import_data_and_flags.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/reflections.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/cif_conversions.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/__init__.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/models.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/tst.py -> build/lib/iotbx/gui_tools creating build/lib/iotbx/mrcfile copying iotbx/mrcfile/__init__.py -> build/lib/iotbx/mrcfile copying iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> build/lib/iotbx/mrcfile creating build/lib/iotbx/kriber copying iotbx/kriber/strudat.py -> build/lib/iotbx/kriber copying iotbx/kriber/__init__.py -> build/lib/iotbx/kriber copying iotbx/kriber/tst_strudat.py -> build/lib/iotbx/kriber creating build/lib/iotbx/pdb copying iotbx/pdb/download.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_rna_dna_atom_names.py -> build/lib/iotbx/pdb copying iotbx/pdb/remark_290_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> build/lib/iotbx/pdb copying iotbx/pdb/cryst1_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/amino_acid_codes.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy_flip_symmetric.py -> build/lib/iotbx/pdb copying iotbx/pdb/aa_utils.py -> build/lib/iotbx/pdb copying iotbx/pdb/nucleic_acid_codes.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_secondary_structure.py -> build/lib/iotbx/pdb copying iotbx/pdb/remark_2_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> build/lib/iotbx/pdb copying iotbx/pdb/web_service_api.py -> build/lib/iotbx/pdb copying iotbx/pdb/mmcif.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_atom_selection.py -> build/lib/iotbx/pdb copying iotbx/pdb/remark_3_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_secondary_structure_2.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_utils.py -> build/lib/iotbx/pdb copying iotbx/pdb/pdbe.py -> build/lib/iotbx/pdb copying iotbx/pdb/extract_rfactors_resolutions_sigma.py -> build/lib/iotbx/pdb copying iotbx/pdb/modified_aa_names.py -> build/lib/iotbx/pdb copying iotbx/pdb/hierarchy.py -> build/lib/iotbx/pdb copying iotbx/pdb/atom_name_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/secondary_structure.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_atom_selection_string.py -> build/lib/iotbx/pdb copying iotbx/pdb/experiment_type.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy_atom_sort.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_pdb.py -> build/lib/iotbx/pdb copying iotbx/pdb/atom_selection.py -> build/lib/iotbx/pdb copying iotbx/pdb/xray_structure.py -> build/lib/iotbx/pdb copying iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> build/lib/iotbx/pdb copying iotbx/pdb/__init__.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_read_mtrix_records_from_cif.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_input_pickling.py -> build/lib/iotbx/pdb copying iotbx/pdb/rna_dna_detection.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_mmcif_hierarchy.py -> build/lib/iotbx/pdb copying iotbx/pdb/modified_rna_dna_names.py -> build/lib/iotbx/pdb copying iotbx/pdb/hybrid_36.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_atom_name_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_mmcif.py -> build/lib/iotbx/pdb copying iotbx/pdb/rcsb.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_tls.py -> build/lib/iotbx/pdb copying iotbx/pdb/misc_records_output.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_mmcif_hierarchy_2.py -> build/lib/iotbx/pdb copying iotbx/pdb/crystal_symmetry_from_pdb.py -> build/lib/iotbx/pdb copying iotbx/pdb/fetch.py -> build/lib/iotbx/pdb copying iotbx/pdb/records.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_ext.py -> build/lib/iotbx/pdb copying iotbx/pdb/utils.py -> build/lib/iotbx/pdb copying iotbx/pdb/pdb_v3_cif_conversion.py -> build/lib/iotbx/pdb creating build/lib/iotbx/ncs copying iotbx/ncs/__init__.py -> build/lib/iotbx/ncs creating build/lib/iotbx/programs copying iotbx/programs/split_data_cif.py -> build/lib/iotbx/programs copying iotbx/programs/unique_with_biomt.py -> build/lib/iotbx/programs copying iotbx/programs/box_around_molecule.py -> build/lib/iotbx/programs copying iotbx/programs/__init__.py -> build/lib/iotbx/programs creating build/lib/iotbx/cns copying iotbx/cns/crystal_symmetry_from_inp.py -> build/lib/iotbx/cns copying iotbx/cns/reflection_reader.py -> build/lib/iotbx/cns copying iotbx/cns/crystal_symmetry_utils.py -> build/lib/iotbx/cns copying iotbx/cns/sdb_reader.py -> build/lib/iotbx/cns copying iotbx/cns/sdb_writer.py -> build/lib/iotbx/cns copying iotbx/cns/tst_cns.py -> build/lib/iotbx/cns copying iotbx/cns/xray_structure.py -> build/lib/iotbx/cns copying iotbx/cns/miller_array.py -> build/lib/iotbx/cns copying iotbx/cns/__init__.py -> build/lib/iotbx/cns copying iotbx/cns/space_group_symbols.py -> build/lib/iotbx/cns copying iotbx/cns/crystal_symmetry_from_sdb.py -> build/lib/iotbx/cns copying iotbx/cns/pdb_remarks.py -> build/lib/iotbx/cns copying iotbx/cns/index_fobs_sigma_reader.py -> build/lib/iotbx/cns creating build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v3_better.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v2_simple.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/__init__.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/tst.py -> build/lib/iotbx/examples/pdb_truncate_to_ala creating build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_user_selections.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_without_validation.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_shortcut_1.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/__init__.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_input.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_reordered_chains.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_ligs.py -> build/lib/iotbx/regression/ncs creating build/lib/iotbx/detectors/context copying iotbx/detectors/context/endstation_max_iv_trial.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/spot_xy_convention.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/config_detector.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/endstation.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/camera_convention.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/__init__.py -> build/lib/iotbx/detectors/context creating build/lib/iotbx/detectors/util copying iotbx/detectors/util/__init__.py -> build/lib/iotbx/detectors/util copying iotbx/detectors/util/filters.py -> build/lib/iotbx/detectors/util creating build/lib/iotbx/pdb/remediation copying iotbx/pdb/remediation/remediator.py -> build/lib/iotbx/pdb/remediation copying iotbx/pdb/remediation/__init__.py -> build/lib/iotbx/pdb/remediation copying iotbx/pdb/remediation/tst_remediator.py -> build/lib/iotbx/pdb/remediation creating build/lib/qttbx/examples copying qttbx/examples/data_manager_example.py -> build/lib/qttbx/examples copying qttbx/examples/__init__.py -> build/lib/qttbx/examples copying qttbx/examples/_helpers.py -> build/lib/qttbx/examples copying qttbx/examples/phil_widgets_example.py -> build/lib/qttbx/examples creating build/lib/qttbx/widgets copying qttbx/widgets/__init__.py -> build/lib/qttbx/widgets copying qttbx/widgets/font_init.py -> build/lib/qttbx/widgets creating build/lib/qttbx/regression copying qttbx/regression/tst_chat_message_bubble.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_tool_approval.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_overlay_anchor.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_auto_height.py -> build/lib/qttbx/regression copying qttbx/regression/tst_run_tests_manifest.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_credentials_dialog.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_artifact_panel.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_conversation_widgets.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_profile.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_session.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_approval_coordinator.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_tools.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_storage.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_skills.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_image.py -> build/lib/qttbx/regression copying qttbx/regression/tst_data_manager_widget.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_agent_core.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_runner.py -> build/lib/qttbx/regression copying qttbx/regression/tst_phil_widgets.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_mcp_client.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_question_card.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_markdown.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_eliding.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_diagnostics.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_message_input.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_subagent.py -> build/lib/qttbx/regression copying qttbx/regression/__init__.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_storage_session.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_subagent_view.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_logging_setup.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_search.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_window_chrome.py -> build/lib/qttbx/regression creating build/lib/qttbx/viewers copying qttbx/viewers/__init__.py -> build/lib/qttbx/viewers copying qttbx/viewers/chimerax.py -> build/lib/qttbx/viewers creating build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/search_bar.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/logging_setup.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/conversation_view.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/eliding.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/tool_call_disclosure.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/edge_rail.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/chat_top_bar.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/artifact.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/auto_height.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/question_card.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/markdown_export.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/diagnostics.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/artifact_panel.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/conversation_search.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/__init__.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/conversation_list.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/credentials_dialog.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/message_bubble.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/markdown_view.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/image_lightbox.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/overlay_anchor.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/tool_approval.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/image_cache.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/message_input.py -> build/lib/qttbx/widgets/chat creating build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/int_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/words_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/str_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/multiple.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/key_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/float_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/_colors.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/unit_cell.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/delegate.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/path_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/choice_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/space_group.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/text_base.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/ints_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/atom_selection.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/floats_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/bool_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/__init__.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/qstr_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/strings_widget.py -> build/lib/qttbx/widgets/phil creating build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/_binding_popup.py -> build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/widget.py -> build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/_phil_helpers.py -> build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/__init__.py -> build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/_delegate.py -> build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/_table_model.py -> build/lib/qttbx/widgets/data_manager creating build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/profile.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/subagent.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/approval.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/tools.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/paths.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/session.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/events.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/runner.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/base.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/storage.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/conversation.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/mcp_client.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/__init__.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/skills.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/errors.py -> build/lib/qttbx/widgets/chat/agent creating build/lib/simtbx/gpu copying simtbx/gpu/tst_shoeboxes.py -> build/lib/simtbx/gpu copying simtbx/gpu/tst_gpu_multisource_background.py -> build/lib/simtbx/gpu copying simtbx/gpu/__init__.py -> build/lib/simtbx/gpu copying simtbx/gpu/tst_exafel_api.py -> build/lib/simtbx/gpu creating build/lib/simtbx/kokkos copying simtbx/kokkos/tst_kokkos_lib.py -> build/lib/simtbx/kokkos copying simtbx/kokkos/__init__.py -> build/lib/simtbx/kokkos creating build/lib/simtbx/pixel copying simtbx/pixel/__init__.py -> build/lib/simtbx/pixel creating build/lib/simtbx/diffBragg copying simtbx/diffBragg/ensemble_refine_launcher.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/phil.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/psf.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/attr_list.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/device.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/hopper_io.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/mpi_logger.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/hopper_ensemble_utils.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/hopper_utils.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/prep_stage2_input.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/stage_two_utils.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/__init__.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/parameter_errors.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/utils.py -> build/lib/simtbx/diffBragg creating build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_crystal.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_init.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_input.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_multisource_background.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_minimal.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_basic.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gaussian_mosaicity.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/sim_data.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_beam.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_threads.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/__init__.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gauss_argchk.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_frames.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/anisotropic_mosaicity.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/utils.py -> build/lib/simtbx/nanoBragg creating build/lib/simtbx/modeling copying simtbx/modeling/FormatHDF5AttributeGeometry.py -> build/lib/simtbx/modeling copying simtbx/modeling/__init__.py -> build/lib/simtbx/modeling copying simtbx/modeling/forward_models.py -> build/lib/simtbx/modeling copying simtbx/modeling/predictions.py -> build/lib/simtbx/modeling creating build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/parameters.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/stage_two_refiner.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/__init__.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/geometry.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/base_refiner.py -> build/lib/simtbx/diffBragg/refiners creating build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/manager.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/__init__.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems creating build/lib/xcif/regression copying xcif/regression/tst_bindings.py -> build/lib/xcif/regression copying xcif/regression/tst_example_tokenize.py -> build/lib/xcif/regression copying xcif/regression/tst_utf8.py -> build/lib/xcif/regression copying xcif/regression/tst_pdb_coordinates.py -> build/lib/xcif/regression copying xcif/regression/tst_iotbx_cif_reader_parity.py -> build/lib/xcif/regression copying xcif/regression/tst_gil_release.py -> build/lib/xcif/regression copying xcif/regression/tst_semicolon_field_strict.py -> build/lib/xcif/regression copying xcif/regression/tst_string_interning.py -> build/lib/xcif/regression copying xcif/regression/tst_quoted_string_delimiter.py -> build/lib/xcif/regression copying xcif/regression/tst_non_strict_mode.py -> build/lib/xcif/regression copying xcif/regression/tst_example_parse.py -> build/lib/xcif/regression copying xcif/regression/tst_memory.py -> build/lib/xcif/regression copying xcif/regression/tst_iotbx_cif_reader_engine.py -> build/lib/xcif/regression copying xcif/regression/tst_api_compat.py -> build/lib/xcif/regression copying xcif/regression/tst_roundtrip.py -> build/lib/xcif/regression copying xcif/regression/__init__.py -> build/lib/xcif/regression copying xcif/regression/tst_parse_verify.py -> build/lib/xcif/regression copying xcif/regression/tst_pdb_sf.py -> build/lib/xcif/regression creating build/lib/xcif/benchmarks copying xcif/benchmarks/__init__.py -> build/lib/xcif/benchmarks copying xcif/benchmarks/run_benchmarks.py -> build/lib/xcif/benchmarks creating build/lib/serialtbx/detector copying serialtbx/detector/rayonix.py -> build/lib/serialtbx/detector copying serialtbx/detector/cspad.py -> build/lib/serialtbx/detector copying serialtbx/detector/__init__.py -> build/lib/serialtbx/detector copying serialtbx/detector/xtc.py -> build/lib/serialtbx/detector copying serialtbx/detector/jungfrau.py -> build/lib/serialtbx/detector creating build/lib/serialtbx/mono_simulation copying serialtbx/mono_simulation/util.py -> build/lib/serialtbx/mono_simulation copying serialtbx/mono_simulation/__init__.py -> build/lib/serialtbx/mono_simulation copying serialtbx/mono_simulation/max_like.py -> build/lib/serialtbx/mono_simulation creating build/lib/serialtbx/util copying serialtbx/util/energy_scan_notch_finder.py -> build/lib/serialtbx/util copying serialtbx/util/construct_frame.py -> build/lib/serialtbx/util copying serialtbx/util/__init__.py -> build/lib/serialtbx/util copying serialtbx/util/time.py -> build/lib/serialtbx/util creating build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/metrology.py -> build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/generic_detector.py -> build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/__init__.py -> build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/cspad_detector.py -> build/lib/serialtbx/detector/legacy_metrology creating build/lib/scitbx/command_line copying scitbx/command_line/show_sizes.py -> build/lib/scitbx/command_line copying scitbx/command_line/histogram.py -> build/lib/scitbx/command_line copying scitbx/command_line/generate_error_h.py -> build/lib/scitbx/command_line copying scitbx/command_line/show_exp_times.py -> build/lib/scitbx/command_line copying scitbx/command_line/__init__.py -> build/lib/scitbx/command_line copying scitbx/command_line/apply_tapenade_hints.py -> build/lib/scitbx/command_line copying scitbx/command_line/unicode_examples.py -> build/lib/scitbx/command_line creating build/lib/scitbx/examples copying scitbx/examples/bootstrap.py -> build/lib/scitbx/examples copying scitbx/examples/integrating_a_weighted_sinc_function.py -> build/lib/scitbx/examples copying scitbx/examples/functions.py -> build/lib/scitbx/examples copying scitbx/examples/minimizer_comparisons.py -> build/lib/scitbx/examples copying scitbx/examples/lbfgs_linear_least_squares_fit.py -> build/lib/scitbx/examples copying scitbx/examples/flex_array_loops.py -> build/lib/scitbx/examples copying scitbx/examples/principal_axes_of_inertia.py -> build/lib/scitbx/examples copying scitbx/examples/immoptibox_ports.py -> build/lib/scitbx/examples copying scitbx/examples/chebyshev_lsq_example.py -> build/lib/scitbx/examples copying scitbx/examples/flex_grid.py -> build/lib/scitbx/examples copying scitbx/examples/__init__.py -> build/lib/scitbx/examples copying scitbx/examples/lbfgs_recipe.py -> build/lib/scitbx/examples copying scitbx/examples/rigid_body_refinement_core.py -> build/lib/scitbx/examples creating build/lib/scitbx/stl copying scitbx/stl/tst_map.py -> build/lib/scitbx/stl copying scitbx/stl/vector.py -> build/lib/scitbx/stl copying scitbx/stl/set.py -> build/lib/scitbx/stl copying scitbx/stl/map.py -> build/lib/scitbx/stl copying scitbx/stl/__init__.py -> build/lib/scitbx/stl copying scitbx/stl/tst_set.py -> build/lib/scitbx/stl copying scitbx/stl/tst_vector.py -> build/lib/scitbx/stl creating build/lib/scitbx/stdlib copying scitbx/stdlib/__init__.py -> build/lib/scitbx/stdlib creating build/lib/scitbx/suffixtree copying scitbx/suffixtree/__init__.py -> build/lib/scitbx/suffixtree copying scitbx/suffixtree/single.py -> build/lib/scitbx/suffixtree creating build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_func_free_line_search.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_curvatures.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_mpi_split_evaluator.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/__init__.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_lbfgs_fem.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_ext.py -> build/lib/scitbx/lbfgs creating build/lib/scitbx/graph copying scitbx/graph/test_cases_tardy_pdb.py -> build/lib/scitbx/graph copying scitbx/graph/rigidity_matrix_symbolic.py -> build/lib/scitbx/graph copying scitbx/graph/tst_utils.py -> build/lib/scitbx/graph copying scitbx/graph/tst_rigidity.py -> build/lib/scitbx/graph copying scitbx/graph/tst_tardy_tree_find_paths.py -> build/lib/scitbx/graph copying scitbx/graph/rigidity.py -> build/lib/scitbx/graph copying scitbx/graph/__init__.py -> build/lib/scitbx/graph copying scitbx/graph/tst_tardy_tree.py -> build/lib/scitbx/graph copying scitbx/graph/tardy_tree.py -> build/lib/scitbx/graph copying scitbx/graph/utils.py -> build/lib/scitbx/graph creating build/lib/scitbx/matrix copying scitbx/matrix/row_echelon.py -> build/lib/scitbx/matrix copying scitbx/matrix/__init__.py -> build/lib/scitbx/matrix creating build/lib/scitbx/slatec copying scitbx/slatec/__init__.py -> build/lib/scitbx/slatec creating build/lib/scitbx/linalg copying scitbx/linalg/householder.py -> build/lib/scitbx/linalg copying scitbx/linalg/svd.py -> build/lib/scitbx/linalg copying scitbx/linalg/eigensystem.py -> build/lib/scitbx/linalg copying scitbx/linalg/__init__.py -> build/lib/scitbx/linalg copying scitbx/linalg/ext.py -> build/lib/scitbx/linalg creating build/lib/scitbx/wigner copying scitbx/wigner/__init__.py -> build/lib/scitbx/wigner copying scitbx/wigner/tst_wigner3j.py -> build/lib/scitbx/wigner creating build/lib/scitbx/dtmin copying scitbx/dtmin/reparams.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/min_logging.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/refinebase.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/bounds.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/auxiliary.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/optional.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/minimizer.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/__init__.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/compulsory.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/realsymmetricpseudoinverse.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/twisted_gaussian.py -> build/lib/scitbx/dtmin creating build/lib/scitbx/serialization copying scitbx/serialization/__init__.py -> build/lib/scitbx/serialization creating build/lib/scitbx/iso_surface copying scitbx/iso_surface/__init__.py -> build/lib/scitbx/iso_surface copying scitbx/iso_surface/tst_iso_surface.py -> build/lib/scitbx/iso_surface creating build/lib/scitbx/tests copying scitbx/tests/simplex.py -> build/lib/scitbx/tests copying scitbx/tests/tst_r3_utils.py -> build/lib/scitbx/tests copying scitbx/tests/tst_basic.py -> build/lib/scitbx/tests copying scitbx/tests/differential_evolution.py -> build/lib/scitbx/tests copying scitbx/tests/direct_search_simulated_annealing.py -> build/lib/scitbx/tests copying scitbx/tests/golden_section_search.py -> build/lib/scitbx/tests copying scitbx/tests/tst_minimizer_lbfgs_general.py -> build/lib/scitbx/tests copying scitbx/tests/tst_genetic_algorithm_with_mp.py -> build/lib/scitbx/tests copying scitbx/tests/__init__.py -> build/lib/scitbx/tests copying scitbx/tests/tst_cubicle_neighbors.py -> build/lib/scitbx/tests copying scitbx/tests/tst_smoothing.py -> build/lib/scitbx/tests copying scitbx/tests/tst_regular_grid_on_unit_sphere.py -> build/lib/scitbx/tests creating build/lib/scitbx/array_family copying scitbx/array_family/flex.py -> build/lib/scitbx/array_family copying scitbx/array_family/__init__.py -> build/lib/scitbx/array_family copying scitbx/array_family/shared.py -> build/lib/scitbx/array_family creating build/lib/scitbx/math copying scitbx/math/chebyshev_lsq_fit.py -> build/lib/scitbx/math copying scitbx/math/gaussian_fit.py -> build/lib/scitbx/math copying scitbx/math/distributions.py -> build/lib/scitbx/math copying scitbx/math/tst_undirected_graph.py -> build/lib/scitbx/math copying scitbx/math/curve_fitting.py -> build/lib/scitbx/math copying scitbx/math/incremental_SO3_sampling.py -> build/lib/scitbx/math copying scitbx/math/tst_zernike_mom.py -> build/lib/scitbx/math copying scitbx/math/minimum_covering_ellipsoid.py -> build/lib/scitbx/math copying scitbx/math/tst_multivariate_moments.py -> build/lib/scitbx/math copying scitbx/math/cubic_spline.py -> build/lib/scitbx/math copying scitbx/math/fit_peak.py -> build/lib/scitbx/math copying scitbx/math/tst_zernike.py -> build/lib/scitbx/math copying scitbx/math/clustering.py -> build/lib/scitbx/math copying scitbx/math/des_3_100_13.py -> build/lib/scitbx/math copying scitbx/math/sphere_sphere_intersection.py -> build/lib/scitbx/math copying scitbx/math/tst_so3_lie_algebra.py -> build/lib/scitbx/math copying scitbx/math/undirected_graph.py -> build/lib/scitbx/math copying scitbx/math/des_3_240_21.py -> build/lib/scitbx/math copying scitbx/math/zernike_align_fft.py -> build/lib/scitbx/math copying scitbx/math/scale_curves.py -> build/lib/scitbx/math copying scitbx/math/tst_2d_zernike.py -> build/lib/scitbx/math copying scitbx/math/so3_lie_algebra.py -> build/lib/scitbx/math copying scitbx/math/sieve_of_eratosthenes.py -> build/lib/scitbx/math copying scitbx/math/spe.py -> build/lib/scitbx/math copying scitbx/math/breakpoint.py -> build/lib/scitbx/math copying scitbx/math/__init__.py -> build/lib/scitbx/math copying scitbx/math/euler_angles.py -> build/lib/scitbx/math copying scitbx/math/fit_quadratic_function.py -> build/lib/scitbx/math copying scitbx/math/superpose.py -> build/lib/scitbx/math copying scitbx/math/periodogram.py -> build/lib/scitbx/math copying scitbx/math/fliege_mayer_900.py -> build/lib/scitbx/math copying scitbx/math/multiple_superposition.py -> build/lib/scitbx/math copying scitbx/math/fliege_mayer_400.py -> build/lib/scitbx/math copying scitbx/math/ext.py -> build/lib/scitbx/math copying scitbx/math/tst_bessel_zeros.py -> build/lib/scitbx/math copying scitbx/math/gumbel.py -> build/lib/scitbx/math copying scitbx/math/besselk.py -> build/lib/scitbx/math copying scitbx/math/gaussian.py -> build/lib/scitbx/math copying scitbx/math/lefebvre.py -> build/lib/scitbx/math copying scitbx/math/fliege_mayer_900_ylm.py -> build/lib/scitbx/math copying scitbx/math/farey.py -> build/lib/scitbx/math creating build/lib/scitbx/sparse copying scitbx/sparse/__init__.py -> build/lib/scitbx/sparse creating build/lib/scitbx/glmtbx copying scitbx/glmtbx/__init__.py -> build/lib/scitbx/glmtbx creating build/lib/scitbx/source_generators copying scitbx/source_generators/lbfgs_fem.py -> build/lib/scitbx/source_generators copying scitbx/source_generators/flex_fwd_h.py -> build/lib/scitbx/source_generators copying scitbx/source_generators/__init__.py -> build/lib/scitbx/source_generators copying scitbx/source_generators/utils.py -> build/lib/scitbx/source_generators creating build/lib/scitbx/lstbx copying scitbx/lstbx/normal_eqns_solving.py -> build/lib/scitbx/lstbx copying scitbx/lstbx/__init__.py -> build/lib/scitbx/lstbx copying scitbx/lstbx/normal_eqns.py -> build/lib/scitbx/lstbx creating build/lib/scitbx/line_search copying scitbx/line_search/__init__.py -> build/lib/scitbx/line_search creating build/lib/scitbx/rigid_body copying scitbx/rigid_body/__init__.py -> build/lib/scitbx/rigid_body copying scitbx/rigid_body/tst.py -> build/lib/scitbx/rigid_body creating build/lib/scitbx/misc copying scitbx/misc/__init__.py -> build/lib/scitbx/misc creating build/lib/scitbx/boost_python copying scitbx/boost_python/__init__.py -> build/lib/scitbx/boost_python creating build/lib/scitbx/error copying scitbx/error/tst_error.py -> build/lib/scitbx/error copying scitbx/error/__init__.py -> build/lib/scitbx/error creating build/lib/scitbx/python_utils copying scitbx/python_utils/graph_tools.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/random_transform.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/tst_random_transform.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/tst_robust.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/dicts.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/robust_statistics.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/tst_graph.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/__init__.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/signal_utils.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/command_line.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/misc.py -> build/lib/scitbx/python_utils creating build/lib/scitbx/random copying scitbx/random/__init__.py -> build/lib/scitbx/random creating build/lib/scitbx/graphics_utils copying scitbx/graphics_utils/__init__.py -> build/lib/scitbx/graphics_utils copying scitbx/graphics_utils/tst.py -> build/lib/scitbx/graphics_utils creating build/lib/scitbx/examples/bevington copying scitbx/examples/bevington/silver.py -> build/lib/scitbx/examples/bevington copying scitbx/examples/bevington/__init__.py -> build/lib/scitbx/examples/bevington creating build/lib/scitbx/suffixtree/test copying scitbx/suffixtree/test/__init__.py -> build/lib/scitbx/suffixtree/test copying scitbx/suffixtree/test/tst_single.py -> build/lib/scitbx/suffixtree/test creating build/lib/scitbx/suffixtree/boost_python copying scitbx/suffixtree/boost_python/__init__.py -> build/lib/scitbx/suffixtree/boost_python creating build/lib/scitbx/lbfgs/dev copying scitbx/lbfgs/dev/__init__.py -> build/lib/scitbx/lbfgs/dev copying scitbx/lbfgs/dev/twisted_gaussian.py -> build/lib/scitbx/lbfgs/dev copying scitbx/lbfgs/dev/run.py -> build/lib/scitbx/lbfgs/dev creating build/lib/scitbx/matrix/tests copying scitbx/matrix/tests/tst_householder.py -> build/lib/scitbx/matrix/tests copying scitbx/matrix/tests/tst_row_echelon.py -> build/lib/scitbx/matrix/tests copying scitbx/matrix/tests/__init__.py -> build/lib/scitbx/matrix/tests creating build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_svd.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_matrix.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_lapack_dsyev.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_cholesky.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_lapack_svd.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_eigensystem.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/__init__.py -> build/lib/scitbx/linalg/tests creating build/lib/scitbx/linalg/boost_python copying scitbx/linalg/boost_python/__init__.py -> build/lib/scitbx/linalg/boost_python creating build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/tst_dtmin_twisted.py -> build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/tst_dtmin_booth.py -> build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/tst_dtmin_basic.py -> build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/__init__.py -> build/lib/scitbx/dtmin/regression creating build/lib/scitbx/array_family/detail copying scitbx/array_family/detail/__init__.py -> build/lib/scitbx/array_family/detail creating build/lib/scitbx/array_family/accessors copying scitbx/array_family/accessors/__init__.py -> build/lib/scitbx/array_family/accessors creating build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_numpy_bridge.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_shared.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_flex.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/regression_test.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/__init__.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_flex_argument_passing.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_smart_selection.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_numpy_scalar_conversions.py -> build/lib/scitbx/array_family/boost_python creating build/lib/scitbx/math/dev copying scitbx/math/dev/__init__.py -> build/lib/scitbx/math/dev creating build/lib/scitbx/math/tests copying scitbx/math/tests/tst_fit_peak.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_line_search.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_tetrahedron.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_resample.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_dmatrix.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_angle_derivative.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_math.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_exp_functions.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_euler_angles.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_orthonormal_basis.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_similarity_indices.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_gcd.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_g_function.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_weighted_correlation.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_gaussian.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_bessel.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_uniform_rotation_matrix.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_halton.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/__init__.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_curve_fitting.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_clustering.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_r3_rotation.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_quadrature.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_periodogram.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_cubic_equation.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_fit_quadratic_function.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_superpose.py -> build/lib/scitbx/math/tests creating build/lib/scitbx/math/boost_python copying scitbx/math/boost_python/__init__.py -> build/lib/scitbx/math/boost_python creating build/lib/scitbx/math/erf copying scitbx/math/erf/__init__.py -> build/lib/scitbx/math/erf creating build/lib/scitbx/sparse/tests copying scitbx/sparse/tests/tst_sparse.py -> build/lib/scitbx/sparse/tests copying scitbx/sparse/tests/tst_lu_factorization.py -> build/lib/scitbx/sparse/tests copying scitbx/sparse/tests/__init__.py -> build/lib/scitbx/sparse/tests creating build/lib/scitbx/sparse/boost_python copying scitbx/sparse/boost_python/__init__.py -> build/lib/scitbx/sparse/boost_python creating build/lib/scitbx/glmtbx/tests copying scitbx/glmtbx/tests/__init__.py -> build/lib/scitbx/glmtbx/tests copying scitbx/glmtbx/tests/tst.py -> build/lib/scitbx/glmtbx/tests creating build/lib/scitbx/glmtbx/boost_python copying scitbx/glmtbx/boost_python/__init__.py -> build/lib/scitbx/glmtbx/boost_python creating build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_reductions.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_std_imports.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_algebras.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/__init__.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_operator_functors.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/operator_functor_info.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_all.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_apply.py -> build/lib/scitbx/source_generators/array_family creating build/lib/scitbx/lstbx/tests copying scitbx/lstbx/tests/tst_normal_equations.py -> build/lib/scitbx/lstbx/tests copying scitbx/lstbx/tests/test_problems.py -> build/lib/scitbx/lstbx/tests copying scitbx/lstbx/tests/__init__.py -> build/lib/scitbx/lstbx/tests creating build/lib/scitbx/lstbx/benchmarks copying scitbx/lstbx/benchmarks/__init__.py -> build/lib/scitbx/lstbx/benchmarks creating build/lib/scitbx/lstbx/boost_python copying scitbx/lstbx/boost_python/__init__.py -> build/lib/scitbx/lstbx/boost_python creating build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_featherstone.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/test_utils.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_joint_lib.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_free_motion.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_free_motion.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/free_motion_reference_impl.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/joint_lib.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_free_motion_hard.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_joint_lib.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_molecules.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/__init__.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/featherstone.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_molecules.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_spherical_refinement.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_singular.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/test_simulation.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/utils.py -> build/lib/scitbx/rigid_body/proto creating build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_basic.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_tardy.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/spatial_lib.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/joint_lib.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/__init__.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/featherstone.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/body_lib.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/make_bundles.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_energy_plots.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/wx_tardy.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tardy.py -> build/lib/scitbx/rigid_body/essence creating build/lib/scitbx/random/tests copying scitbx/random/tests/__init__.py -> build/lib/scitbx/random/tests copying scitbx/random/tests/tst_random.py -> build/lib/scitbx/random/tests creating build/lib/scitbx/random/boost_python copying scitbx/random/boost_python/__init__.py -> build/lib/scitbx/random/boost_python creating build/lib/cctbx/command_line copying cctbx/command_line/form_factor_query.py -> build/lib/cctbx/command_line copying cctbx/command_line/cctbx_test_nightly.py -> build/lib/cctbx/command_line copying cctbx/command_line/cod_select_and_pickle.py -> build/lib/cctbx/command_line copying cctbx/command_line/samosa_join.py -> build/lib/cctbx/command_line copying cctbx/command_line/samosa_scale.py -> build/lib/cctbx/command_line copying cctbx/command_line/euclidean_model_matching.py -> build/lib/cctbx/command_line copying cctbx/command_line/eltbx.show_fp_fdp.py -> build/lib/cctbx/command_line copying cctbx/command_line/diffuse.py -> build/lib/cctbx/command_line copying cctbx/command_line/brehm_diederichs.py -> build/lib/cctbx/command_line copying cctbx/command_line/precession_view.py -> build/lib/cctbx/command_line copying cctbx/command_line/space_group_info.py -> build/lib/cctbx/command_line copying cctbx/command_line/qscore.py -> build/lib/cctbx/command_line copying cctbx/command_line/segment_and_split_map.py -> build/lib/cctbx/command_line copying cctbx/command_line/__init__.py -> build/lib/cctbx/command_line copying cctbx/command_line/auto_sharpen.py -> build/lib/cctbx/command_line copying cctbx/command_line/subgroups.py -> build/lib/cctbx/command_line copying cctbx/command_line/find_reticular_twin_laws.py -> build/lib/cctbx/command_line copying cctbx/command_line/structure_factor_timings.py -> build/lib/cctbx/command_line copying cctbx/command_line/wavelength_units.py -> build/lib/cctbx/command_line copying cctbx/command_line/version.py -> build/lib/cctbx/command_line creating build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/energies.py -> build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/flags.py -> build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/__init__.py -> build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/tst_ext.py -> build/lib/cctbx/adp_restraints creating build/lib/cctbx/examples copying cctbx/examples/site_symmetry_table.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_4.py -> build/lib/cctbx/examples copying cctbx/examples/phase_o_phrenia.py -> build/lib/cctbx/examples copying cctbx/examples/unit_cell_minimizers.py -> build/lib/cctbx/examples copying cctbx/examples/lebedev_2005_perturbation.py -> build/lib/cctbx/examples copying cctbx/examples/miller_transform.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_2.py -> build/lib/cctbx/examples copying cctbx/examples/hirshfeld_test.py -> build/lib/cctbx/examples copying cctbx/examples/g_exp_i_partial_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives_4.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives_2.py -> build/lib/cctbx/examples copying cctbx/examples/symops_530.py -> build/lib/cctbx/examples copying cctbx/examples/exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/analyze_adp.py -> build/lib/cctbx/examples copying cctbx/examples/space_group_matrices.py -> build/lib/cctbx/examples copying cctbx/examples/list_non_principal_continuous_shifts.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives_3.py -> build/lib/cctbx/examples copying cctbx/examples/le_page_1982_vs_lebedev_2005.py -> build/lib/cctbx/examples copying cctbx/examples/sub_group_graph.py -> build/lib/cctbx/examples copying cctbx/examples/getting_started.py -> build/lib/cctbx/examples copying cctbx/examples/cr2o3_consistency_checks.py -> build/lib/cctbx/examples copying cctbx/examples/convert_ccp4_symop_lib.py -> build/lib/cctbx/examples copying cctbx/examples/fft_map_electron_density_around_atom.py -> build/lib/cctbx/examples copying cctbx/examples/find_distances_using_cpp_objects.py -> build/lib/cctbx/examples copying cctbx/examples/space_subgroups.py -> build/lib/cctbx/examples copying cctbx/examples/reduced_cell_two_folds.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/location_part.py -> build/lib/cctbx/examples copying cctbx/examples/random_puckers.py -> build/lib/cctbx/examples copying cctbx/examples/tst_exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/find_sys_abs_equiv_space_groups.py -> build/lib/cctbx/examples copying cctbx/examples/g_exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/unit_cell_refinement.py -> build/lib/cctbx/examples copying cctbx/examples/neutron_structure_factors.py -> build/lib/cctbx/examples copying cctbx/examples/trigonal_r_vs_tetragonal_i.py -> build/lib/cctbx/examples copying cctbx/examples/tst_space_subgroups.py -> build/lib/cctbx/examples copying cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/maximum_subgroups.py -> build/lib/cctbx/examples copying cctbx/examples/miller_common_sets.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/f_model_example.py -> build/lib/cctbx/examples copying cctbx/examples/__init__.py -> build/lib/cctbx/examples copying cctbx/examples/adp_symmetry_constraints.py -> build/lib/cctbx/examples copying cctbx/examples/map_skewness.py -> build/lib/cctbx/examples copying cctbx/examples/change_hand_p31.py -> build/lib/cctbx/examples copying cctbx/examples/quartz_structure.py -> build/lib/cctbx/examples copying cctbx/examples/site_symmetry_constraints.py -> build/lib/cctbx/examples copying cctbx/examples/cr2o3_primitive_cell.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_3.py -> build/lib/cctbx/examples copying cctbx/examples/steve_collins.py -> build/lib/cctbx/examples copying cctbx/examples/all_axes.py -> build/lib/cctbx/examples copying cctbx/examples/ccp4_map.py -> build/lib/cctbx/examples copying cctbx/examples/tst_phase_o_phrenia.py -> build/lib/cctbx/examples copying cctbx/examples/random_f_calc.py -> build/lib/cctbx/examples copying cctbx/examples/view_fft_map.py -> build/lib/cctbx/examples creating build/lib/cctbx/development copying cctbx/development/github.py -> build/lib/cctbx/development copying cctbx/development/fmt_utils.py -> build/lib/cctbx/development copying cctbx/development/create_models_or_maps.py -> build/lib/cctbx/development copying cctbx/development/cns_density_modification.py -> build/lib/cctbx/development copying cctbx/development/direct_or_fft.py -> build/lib/cctbx/development copying cctbx/development/space_group_option_parser.py -> build/lib/cctbx/development copying cctbx/development/electron_density_sampling.py -> build/lib/cctbx/development copying cctbx/development/run_shelx.py -> build/lib/cctbx/development copying cctbx/development/approx_amplitude_vs_resolution.py -> build/lib/cctbx/development copying cctbx/development/random_structure.py -> build/lib/cctbx/development copying cctbx/development/tst_cns_epsilon.py -> build/lib/cctbx/development copying cctbx/development/tst_cns_hl.py -> build/lib/cctbx/development copying cctbx/development/__init__.py -> build/lib/cctbx/development copying cctbx/development/make_cns_input.py -> build/lib/cctbx/development copying cctbx/development/make_settings.py -> build/lib/cctbx/development copying cctbx/development/structure_factor_utils.py -> build/lib/cctbx/development copying cctbx/development/run_shelx76.py -> build/lib/cctbx/development copying cctbx/development/debug_utils.py -> build/lib/cctbx/development creating build/lib/cctbx/masks copying cctbx/masks/__init__.py -> build/lib/cctbx/masks creating build/lib/cctbx/geometry copying cctbx/geometry/__init__.py -> build/lib/cctbx/geometry creating build/lib/cctbx/array_family copying cctbx/array_family/flex.py -> build/lib/cctbx/array_family copying cctbx/array_family/__init__.py -> build/lib/cctbx/array_family creating build/lib/cctbx/covariance copying cctbx/covariance/__init__.py -> build/lib/cctbx/covariance creating build/lib/cctbx/crystal copying cctbx/crystal/find_best_cell.py -> build/lib/cctbx/crystal copying cctbx/crystal/super_cell.py -> build/lib/cctbx/crystal copying cctbx/crystal/tst_distance_based_connectivity.py -> build/lib/cctbx/crystal copying cctbx/crystal/tst_super_cell.py -> build/lib/cctbx/crystal copying cctbx/crystal/direct_space_asu.py -> build/lib/cctbx/crystal copying cctbx/crystal/reindex.py -> build/lib/cctbx/crystal copying cctbx/crystal/__init__.py -> build/lib/cctbx/crystal copying cctbx/crystal/coordination_sequences.py -> build/lib/cctbx/crystal copying cctbx/crystal/burzlaff_zimmermann_dewolff.py -> build/lib/cctbx/crystal copying cctbx/crystal/distance_based_connectivity.py -> build/lib/cctbx/crystal copying cctbx/crystal/close_packing.py -> build/lib/cctbx/crystal copying cctbx/crystal/tst_ext.py -> build/lib/cctbx/crystal creating build/lib/cctbx/source_generators copying cctbx/source_generators/flex_fwd_h.py -> build/lib/cctbx/source_generators copying cctbx/source_generators/__init__.py -> build/lib/cctbx/source_generators creating build/lib/cctbx/regression copying cctbx/regression/tst_mem_2.py -> build/lib/cctbx/regression copying cctbx/regression/tst_maptbx_box.py -> build/lib/cctbx/regression copying cctbx/regression/tst_refine_xray_curvs.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_special_op_simplifier.py -> build/lib/cctbx/regression copying cctbx/regression/tst_reflection_statistics.py -> build/lib/cctbx/regression copying cctbx/regression/tst_french_wilson.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_statistics.py -> build/lib/cctbx/regression copying cctbx/regression/tst_triplet_generator.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx.py -> build/lib/cctbx/regression copying cctbx/regression/tst_show_cosets.py -> build/lib/cctbx/regression copying cctbx/regression/tst_fast_nv1995.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_minimization.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_lattice_symmetry.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_subgroups.py -> build/lib/cctbx/regression copying cctbx/regression/tst_maptbx_structure_factors.py -> build/lib/cctbx/regression copying cctbx/regression/tst_loc_res.py -> build/lib/cctbx/regression copying cctbx/regression/tst_weighting_schemes.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sampled_model_density.py -> build/lib/cctbx/regression copying cctbx/regression/tst_wavelength_units.py -> build/lib/cctbx/regression copying cctbx/regression/tst_r_free_utils.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_merge_equivalents.py -> build/lib/cctbx/regression copying cctbx/regression/tst_geometry_restraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_create_models_or_maps.py -> build/lib/cctbx/regression copying cctbx/regression/tst_crystal.py -> build/lib/cctbx/regression copying cctbx/regression/tst_coordination_sequences.py -> build/lib/cctbx/regression copying cctbx/regression/tst_change_basis.py -> build/lib/cctbx/regression copying cctbx/regression/tst_amplitude_normalisation.py -> build/lib/cctbx/regression copying cctbx/regression/tst_mem.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller.py -> build/lib/cctbx/regression copying cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> build/lib/cctbx/regression copying cctbx/regression/tst_twin_target.py -> build/lib/cctbx/regression copying cctbx/regression/tst_geometry_restraints_2.py -> build/lib/cctbx/regression copying cctbx/regression/tst_crystal_asu_clusters.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_data_manipulation.py -> build/lib/cctbx/regression copying cctbx/regression/tst_grm_modifications.py -> build/lib/cctbx/regression copying cctbx/regression/tst_grouped_data.py -> build/lib/cctbx/regression copying cctbx/regression/tst_f_model.py -> build/lib/cctbx/regression copying cctbx/regression/tst_adp_aniso_restraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_krivy_gruber.py -> build/lib/cctbx/regression copying cctbx/regression/tst_wilson_plot.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_fast_gradients.py -> build/lib/cctbx/regression copying cctbx/regression/tst_pair_asu_table.py -> build/lib/cctbx/regression copying cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_minimization_failure.py -> build/lib/cctbx/regression copying cctbx/regression/tst_diffuse.py -> build/lib/cctbx/regression copying cctbx/regression/tst_statistics_graphs.py -> build/lib/cctbx/regression copying cctbx/regression/tst_crystal_close_packing.py -> build/lib/cctbx/regression copying cctbx/regression/tst_geometry_restraints_lbfgs.py -> build/lib/cctbx/regression copying cctbx/regression/tst_map_weights_for_symmetry_summation.py -> build/lib/cctbx/regression copying cctbx/regression/tst_adp_constraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_direct_scaling.py -> build/lib/cctbx/regression copying cctbx/regression/tst_adp_constraints_cartesian.py -> build/lib/cctbx/regression copying cctbx/regression/tst_fourier_transform_real_part_at_x.py -> build/lib/cctbx/regression copying cctbx/regression/tst_map_is_periodic.py -> build/lib/cctbx/regression copying cctbx/regression/tst_reciprocal_space_asu.py -> build/lib/cctbx/regression copying cctbx/regression/tst_pointgroup_tools.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sphericity.py -> build/lib/cctbx/regression copying cctbx/regression/tst_grm_pickling.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_derivatives.py -> build/lib/cctbx/regression copying cctbx/regression/tst_grm_modifications_rm.py -> build/lib/cctbx/regression copying cctbx/regression/__init__.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_fft_map.py -> build/lib/cctbx/regression copying cctbx/regression/tst_find_best_cell.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sf_low_res_accuracy.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_harker.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_double_step_filtration.py -> build/lib/cctbx/regression copying cctbx/regression/tst_connectivity.py -> build/lib/cctbx/regression copying cctbx/regression/tst_maptbx_mask.py -> build/lib/cctbx/regression copying cctbx/regression/tst_emma.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_site_constraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_expand_to_p1.py -> build/lib/cctbx/regression copying cctbx/regression/tst_niggli_reduction_cpp.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_tidy_pickling.py -> build/lib/cctbx/regression copying cctbx/regression/tst_web_change_basis.py -> build/lib/cctbx/regression copying cctbx/regression/tst_fcalc_fft_stability.py -> build/lib/cctbx/regression copying cctbx/regression/tst_prepare_map_for_docking.py -> build/lib/cctbx/regression copying cctbx/regression/tst_connectivity_allsym.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_denominators.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_lookup_utils.py -> build/lib/cctbx/regression copying cctbx/regression/tst_direct_space_asu.py -> build/lib/cctbx/regression copying cctbx/regression/tst_math_module.py -> build/lib/cctbx/regression copying cctbx/regression/tst_match_bijvoet_mates.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_target_functors.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray.py -> build/lib/cctbx/regression creating build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/base_geometry.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/process_nonbonded_proxies.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/energies.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_motif.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/manager.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/standard_cif_links.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/lbfgs.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/linking_class.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/flags.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/__init__.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_angle_derivs.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/auto_linking_types.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_proxy_registry.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_ext.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/distance_least_squares.py -> build/lib/cctbx/geometry_restraints creating build/lib/cctbx/omz copying cctbx/omz/cod_refine.py -> build/lib/cctbx/omz copying cctbx/omz/cod_select_and_pickle.py -> build/lib/cctbx/omz copying cctbx/omz/eval_iso_vs_refined.py -> build/lib/cctbx/omz copying cctbx/omz/pdb_dev.py -> build/lib/cctbx/omz copying cctbx/omz/tst_dev.py -> build/lib/cctbx/omz copying cctbx/omz/bfgs.py -> build/lib/cctbx/omz copying cctbx/omz/cif_refine.py -> build/lib/cctbx/omz copying cctbx/omz/dev.py -> build/lib/cctbx/omz copying cctbx/omz/tst_bfgs.py -> build/lib/cctbx/omz copying cctbx/omz/__init__.py -> build/lib/cctbx/omz copying cctbx/omz/tardy_adaptor.py -> build/lib/cctbx/omz creating build/lib/cctbx/neutron copying cctbx/neutron/__init__.py -> build/lib/cctbx/neutron creating build/lib/cctbx/merging copying cctbx/merging/brehm_diederichs.py -> build/lib/cctbx/merging copying cctbx/merging/__init__.py -> build/lib/cctbx/merging creating build/lib/cctbx/uctbx copying cctbx/uctbx/reduction_base.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/gruber_1973.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/gruber_1973_table_1.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/__init__.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/krivy_gruber_1976.py -> build/lib/cctbx/uctbx creating build/lib/cctbx/miller copying cctbx/miller/tst_map_to_asu_isym.py -> build/lib/cctbx/miller copying cctbx/miller/reindexing.py -> build/lib/cctbx/miller copying cctbx/miller/display.py -> build/lib/cctbx/miller copying cctbx/miller/__init__.py -> build/lib/cctbx/miller copying cctbx/miller/tst_reindexing.py -> build/lib/cctbx/miller creating build/lib/cctbx/macro_mol copying cctbx/macro_mol/rotation_parameters.py -> build/lib/cctbx/macro_mol copying cctbx/macro_mol/__init__.py -> build/lib/cctbx/macro_mol creating build/lib/cctbx/maptbx copying cctbx/maptbx/resolution_from_map_and_model.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_mask.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_atom_curves.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_loft.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/prepare_map_for_docking.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/mask.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_target_and_gradients.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_peak_volume_estimate.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_map_peak_3d_as_2d.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/minimization.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/map_symmetry.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_real_space_refinement_simple.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_interpolation_2.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/mem.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/prepare_map_for_refinement.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/refine_sharpening.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_resolution_from_map_and_model.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/qscore.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/servalcat_difference_map.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_asymmetric_map.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/segment_and_split_map.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_ccp.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/box.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/__init__.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/auto_sharpen.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_MapPeakLocator.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_bcr.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/fsc_curve.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/refine_scales_errors.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/real_space_refinement_simple.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_interpolation.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_qscore.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_get_percentile_cutoffs.py -> build/lib/cctbx/maptbx creating build/lib/cctbx/web copying cctbx/web/phase_o_phrenia.py -> build/lib/cctbx/web copying cctbx/web/change_hand.py -> build/lib/cctbx/web copying cctbx/web/replay.py -> build/lib/cctbx/web copying cctbx/web/cgi_utils.py -> build/lib/cctbx/web copying cctbx/web/iotbx_cif_validate.py -> build/lib/cctbx/web copying cctbx/web/structure_factors_pdb.py -> build/lib/cctbx/web copying cctbx/web/frac_cart.py -> build/lib/cctbx/web copying cctbx/web/explore_symmetry.py -> build/lib/cctbx/web copying cctbx/web/lattice_symmetry.py -> build/lib/cctbx/web copying cctbx/web/structure_factors.py -> build/lib/cctbx/web copying cctbx/web/shelx.py -> build/lib/cctbx/web copying cctbx/web/browse_settings.py -> build/lib/cctbx/web copying cctbx/web/multiple_cell.py -> build/lib/cctbx/web copying cctbx/web/change_setting.py -> build/lib/cctbx/web copying cctbx/web/__init__.py -> build/lib/cctbx/web copying cctbx/web/libtbx_help.py -> build/lib/cctbx/web copying cctbx/web/change_basis.py -> build/lib/cctbx/web copying cctbx/web/dispatcher.py -> build/lib/cctbx/web copying cctbx/web/all_axes.py -> build/lib/cctbx/web copying cctbx/web/emma.py -> build/lib/cctbx/web copying cctbx/web/wyckoff.py -> build/lib/cctbx/web copying cctbx/web/io_utils.py -> build/lib/cctbx/web creating build/lib/cctbx/sgtbx copying cctbx/sgtbx/plane_groups.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/harker.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/show_cosets.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/lattice_symmetry.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/symbol_confidence.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/reticular_twin_laws.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/sub_lattice_tools.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/sys_abs_equiv.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/bravais_types.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/__init__.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/literal_description.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/subgroups.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/rational_matrices_point_groups.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/reticular_pg_tools.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/pointgroup_tools.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/cosets.py -> build/lib/cctbx/sgtbx creating build/lib/cctbx/xray copying cctbx/xray/minimization.py -> build/lib/cctbx/xray copying cctbx/xray/weighting_schemes.py -> build/lib/cctbx/xray copying cctbx/xray/target_functors.py -> build/lib/cctbx/xray copying cctbx/xray/__init__.py -> build/lib/cctbx/xray copying cctbx/xray/observation_types.py -> build/lib/cctbx/xray copying cctbx/xray/structure.py -> build/lib/cctbx/xray copying cctbx/xray/ext.py -> build/lib/cctbx/xray copying cctbx/xray/scatterer.py -> build/lib/cctbx/xray creating build/lib/cctbx/eltbx copying cctbx/eltbx/gaussian_fit.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/neutron.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/covalent_radii.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/formula.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/icsd_radii.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/wavelengths.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/chemical_elements.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/attenuation_coefficient.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/fp_fdp.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/henke.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/tiny_pse.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/e_scattering.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/__init__.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/sasaki.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/distance_based_connectivity.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/van_der_waals_radii.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/read_custom_scattering_dict.py -> build/lib/cctbx/eltbx creating build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/site_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/sites_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/__init__.py -> build/lib/cctbx/examples/structure_factor_calculus creating build/lib/cctbx/examples/merging copying cctbx/examples/merging/data_utilities.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/show_results.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/sigma_correction.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/test_cc_half.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/data_subset.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/__init__.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/tst_permutations.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/test_levenberg_sparse.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/task4.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/test1.py -> build/lib/cctbx/examples/merging creating build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/scale.py -> build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/__init__.py -> build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/join.py -> build/lib/cctbx/examples/merging/samosa creating build/lib/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/generate_henke_cpp.py -> build/lib/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/__init__.py -> build/lib/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> build/lib/cctbx/source_generators/eltbx creating build/lib/cctbx/uctbx/determine_unit_cell copying cctbx/uctbx/determine_unit_cell/__init__.py -> build/lib/cctbx/uctbx/determine_unit_cell creating build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/bcr.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_qmap_02.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_example.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_vrm2.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/compute_tables.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/qmap.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/__init__.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_two_atoms.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_vrm.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_table.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_adp_refine.py -> build/lib/cctbx/maptbx/bcr creating build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jv_index.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jv_asu.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jvx.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/guide_to_notation.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/__init__.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/web_links.py -> build/lib/cctbx/web/asu_gallery creating build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/cut_plane.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/check_redundancies.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/facet_analysis.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/short_cuts.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/__init__.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/reference_table.py -> build/lib/cctbx/sgtbx/direct_space_asu creating build/lib/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> build/lib/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> build/lib/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/__init__.py -> build/lib/cctbx/sgtbx/direct_space_asu/proto creating build/lib/cctbx/xray/observations copying cctbx/xray/observations/tst_observations.py -> build/lib/cctbx/xray/observations copying cctbx/xray/observations/__init__.py -> build/lib/cctbx/xray/observations creating build/lib/cctbx/xray/targets copying cctbx/xray/targets/tst_shelxl_wght_ls.py -> build/lib/cctbx/xray/targets copying cctbx/xray/targets/__init__.py -> build/lib/cctbx/xray/targets copying cctbx/xray/targets/tst_r1.py -> build/lib/cctbx/xray/targets copying cctbx/xray/targets/r1.py -> build/lib/cctbx/xray/targets creating build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/algorithm.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/manager.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_base.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_fft.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_direct.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_fft.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/__init__.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/global_counters.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_direct.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/misc.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradient_flags.py -> build/lib/cctbx/xray/structure_factors creating build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/rez_rez_grant.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/kissel_io.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/kissel_fits.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_fits.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/combine_fits.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/format_gaussian_fits.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_section61_io.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_approx.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/__init__.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/e_scattering_plots.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_kissel.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_cross_validation.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/hydrogen_plots.py -> build/lib/cctbx/eltbx/development creating build/lib/cctbx/eltbx/xray_scattering copying cctbx/eltbx/xray_scattering/__init__.py -> build/lib/cctbx/eltbx/xray_scattering creating build/lib/libtbx/command_line copying libtbx/command_line/find_untested.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_full_command_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/printenv.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_dist_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_reserved_names.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_but_no_repr.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_in_repositories.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_installer.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_stdin.py -> build/lib/libtbx/command_line copying libtbx/command_line/clean_clutter.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_install_script_bat.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_env.py -> build/lib/libtbx/command_line copying libtbx/command_line/run_tests_parallel.py -> build/lib/libtbx/command_line copying libtbx/command_line/phil.py -> build/lib/libtbx/command_line copying libtbx/command_line/resource_monitor_plot.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_stdin_ends_with.py -> build/lib/libtbx/command_line copying libtbx/command_line/bootstrap.py -> build/lib/libtbx/command_line copying libtbx/command_line/sge_available_slots.py -> build/lib/libtbx/command_line copying libtbx/command_line/dtrace.py -> build/lib/libtbx/command_line copying libtbx/command_line/wait_for_file.py -> build/lib/libtbx/command_line copying libtbx/command_line/remove_unused_imports.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_module_dependencies.py -> build/lib/libtbx/command_line copying libtbx/command_line/check_libcpp.py -> build/lib/libtbx/command_line copying libtbx/command_line/seconds_since_the_epoch.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_host_and_user.py -> build/lib/libtbx/command_line copying libtbx/command_line/list_modules.py -> build/lib/libtbx/command_line copying libtbx/command_line/line_count.py -> build/lib/libtbx/command_line copying libtbx/command_line/easy_qsub.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_line_count.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_lib_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/list_source_files_sorted_by_size.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_stdin_contains_strings.py -> build/lib/libtbx/command_line copying libtbx/command_line/add_docstrings_with_ai.py -> build/lib/libtbx/command_line copying libtbx/command_line/reindent.py -> build/lib/libtbx/command_line copying libtbx/command_line/any2unix.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_date_and_time.py -> build/lib/libtbx/command_line copying libtbx/command_line/clear_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_clutter.py -> build/lib/libtbx/command_line copying libtbx/command_line/bundle_as_exe.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_not_show_diff.py -> build/lib/libtbx/command_line copying libtbx/command_line/start_binary_bundle.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_under_build.py -> build/lib/libtbx/command_line copying libtbx/command_line/start_process.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_mac_app.py -> build/lib/libtbx/command_line copying libtbx/command_line/import_all_python.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_number_of_processors.py -> build/lib/libtbx/command_line copying libtbx/command_line/remote_processing.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_repository_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_numeric_version.py -> build/lib/libtbx/command_line copying libtbx/command_line/help.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_include_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_build_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/parallel_simple.py -> build/lib/libtbx/command_line copying libtbx/command_line/ipython_shell_start.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_unused_imports.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_windows_exe.py -> build/lib/libtbx/command_line copying libtbx/command_line/env_run.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_python_dependencies.py -> build/lib/libtbx/command_line copying libtbx/command_line/nequal.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_commands.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_build_options.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_all_on_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/analyse_code_comments.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_pdb_mmcif_problems.py -> build/lib/libtbx/command_line copying libtbx/command_line/install.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_pythonpath.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_old_style_classes.py -> build/lib/libtbx/command_line copying libtbx/command_line/sphinx_build.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_python_sys_executable.py -> build/lib/libtbx/command_line copying libtbx/command_line/epydoc_run.py -> build/lib/libtbx/command_line copying libtbx/command_line/__init__.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_numpy_version.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_unused_imports_crude.py -> build/lib/libtbx/command_line copying libtbx/command_line/run_pickled_function.py -> build/lib/libtbx/command_line copying libtbx/command_line/scons.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_tests.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_bin_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/raise_exception_for_testing.py -> build/lib/libtbx/command_line copying libtbx/command_line/remove_tree.py -> build/lib/libtbx/command_line copying libtbx/command_line/py_compile_all.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_variable_names.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_files.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_cctbx_bundle_for_installer.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_environ_usage.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_unzipsfx.py -> build/lib/libtbx/command_line copying libtbx/command_line/make_sphinx_html.py -> build/lib/libtbx/command_line copying libtbx/command_line/git_avoid_merges.py -> build/lib/libtbx/command_line copying libtbx/command_line/cctbx_chunk.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_selfx.py -> build/lib/libtbx/command_line copying libtbx/command_line/make_dist.py -> build/lib/libtbx/command_line copying libtbx/command_line/extract_code_from_txt.py -> build/lib/libtbx/command_line copying libtbx/command_line/install_conda.py -> build/lib/libtbx/command_line copying libtbx/command_line/prime_factors_of.py -> build/lib/libtbx/command_line copying libtbx/command_line/list_files.py -> build/lib/libtbx/command_line copying libtbx/command_line/path_utility.py -> build/lib/libtbx/command_line copying libtbx/command_line/import_all_ext.py -> build/lib/libtbx/command_line copying libtbx/command_line/sge_qstat_counts.py -> build/lib/libtbx/command_line creating build/lib/libtbx/development copying libtbx/development/timers.py -> build/lib/libtbx/development copying libtbx/development/__init__.py -> build/lib/libtbx/development copying libtbx/development/xcode_build_phase.py -> build/lib/libtbx/development copying libtbx/development/except_Exception.py -> build/lib/libtbx/development creating build/lib/libtbx/langchain copying libtbx/langchain/phenix_knowledge.py -> build/lib/libtbx/langchain copying libtbx/langchain/run_inspect_db.py -> build/lib/libtbx/langchain copying libtbx/langchain/run_query_docs.py -> build/lib/libtbx/langchain copying libtbx/langchain/run_build_db.py -> build/lib/libtbx/langchain copying libtbx/langchain/__init__.py -> build/lib/libtbx/langchain creating build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/remote.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/lsf.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/communication.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/looping.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/__init__.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/scheduling.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/pbs_utils.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/scheduling_helpers.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/tst.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/generic.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/sge_utils.py -> build/lib/libtbx/queuing_system_utils creating build/lib/libtbx/jobs copying libtbx/jobs/tst_manager.py -> build/lib/libtbx/jobs copying libtbx/jobs/fake_slurm.py -> build/lib/libtbx/jobs copying libtbx/jobs/manager.py -> build/lib/libtbx/jobs copying libtbx/jobs/tst_batch.py -> build/lib/libtbx/jobs copying libtbx/jobs/tst_local.py -> build/lib/libtbx/jobs copying libtbx/jobs/tst_slurm.py -> build/lib/libtbx/jobs copying libtbx/jobs/__init__.py -> build/lib/libtbx/jobs creating build/lib/libtbx/sphinx copying libtbx/sphinx/phil.py -> build/lib/libtbx/sphinx copying libtbx/sphinx/pubmed.py -> build/lib/libtbx/sphinx copying libtbx/sphinx/__init__.py -> build/lib/libtbx/sphinx copying libtbx/sphinx/python_string.py -> build/lib/libtbx/sphinx creating build/lib/libtbx/scheduling copying libtbx/scheduling/job_scheduler.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/mp_handler.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/socket_queue.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/cluster_handler.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/parallel_for.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/stacktrace.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/mainthread.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/thread_handler.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/shared_resource.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/file_queue.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/__init__.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/philgen.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/result.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/process_pool.py -> build/lib/libtbx/scheduling creating build/lib/libtbx/phil copying libtbx/phil/interface.py -> build/lib/libtbx/phil copying libtbx/phil/tst_tokenizer.py -> build/lib/libtbx/phil copying libtbx/phil/gui_objects.py -> build/lib/libtbx/phil copying libtbx/phil/tst_interface.py -> build/lib/libtbx/phil copying libtbx/phil/tst_experimental.py -> build/lib/libtbx/phil copying libtbx/phil/tokenizer.py -> build/lib/libtbx/phil copying libtbx/phil/parser.py -> build/lib/libtbx/phil copying libtbx/phil/__init__.py -> build/lib/libtbx/phil copying libtbx/phil/experimental.py -> build/lib/libtbx/phil copying libtbx/phil/command_line.py -> build/lib/libtbx/phil copying libtbx/phil/tst.py -> build/lib/libtbx/phil creating build/lib/libtbx/bundle copying libtbx/bundle/copy_build_libtbx.py -> build/lib/libtbx/bundle copying libtbx/bundle/install_csh.py -> build/lib/libtbx/bundle copying libtbx/bundle/__init__.py -> build/lib/libtbx/bundle copying libtbx/bundle/copy_all.py -> build/lib/libtbx/bundle copying libtbx/bundle/copy_runtime_sources.py -> build/lib/libtbx/bundle copying libtbx/bundle/install_bat.py -> build/lib/libtbx/bundle copying libtbx/bundle/utils.py -> build/lib/libtbx/bundle creating build/lib/libtbx/test_utils copying libtbx/test_utils/t96_roster.py -> build/lib/libtbx/test_utils copying libtbx/test_utils/parallel.py -> build/lib/libtbx/test_utils copying libtbx/test_utils/__init__.py -> build/lib/libtbx/test_utils creating build/lib/libtbx/program_utils copying libtbx/program_utils/statistics_info.py -> build/lib/libtbx/program_utils copying libtbx/program_utils/__init__.py -> build/lib/libtbx/program_utils copying libtbx/program_utils/result.py -> build/lib/libtbx/program_utils creating build/lib/libtbx/server copying libtbx/server/StartServer.py -> build/lib/libtbx/server copying libtbx/server/FileSocket.py -> build/lib/libtbx/server copying libtbx/server/FileServer.py -> build/lib/libtbx/server copying libtbx/server/__init__.py -> build/lib/libtbx/server copying libtbx/server/FileClient.py -> build/lib/libtbx/server copying libtbx/server/SocketServer.py -> build/lib/libtbx/server creating build/lib/libtbx/auto_build copying libtbx/auto_build/make_bundle.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/install_distribution.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/regenerate_module_files.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/bootstrap.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/package_defs.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_mac_app.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/setup_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/plus_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/rpath.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_windows_exe.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/install_base_packages.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_windows_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/installer_utils.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/__init__.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/write_gui_dispatcher_include.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_cctbx_bundle_for_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/install_conda.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_mac_pkg.py -> build/lib/libtbx/auto_build creating build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/phenix_programs.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/yaml_loader.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/summary_display.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/thinking_prompts.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/prompts_hybrid.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/html_report_template.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/plan_schema.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/plan_template_loader.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/metric_patterns.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/kb_loader.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/__init__.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/api_schema.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/prompts.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/explanation_prompts.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/program_registration.py -> build/lib/libtbx/langchain/knowledge creating build/lib/libtbx/langchain/commands copying libtbx/langchain/commands/base.py -> build/lib/libtbx/langchain/commands copying libtbx/langchain/commands/__init__.py -> build/lib/libtbx/langchain/commands creating build/lib/libtbx/langchain/examples copying libtbx/langchain/examples/__init__.py -> build/lib/libtbx/langchain/examples creating build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/perceive_checks.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/graph_state.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/thinking_agent.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/placement_checker.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/sanity_checker.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/command_postprocessor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/strategy_memory.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/program_registry.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/session_tools.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/command_builder.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/event_log.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/program_validator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/advice_preprocessor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/rules_selector.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/metrics_analyzer.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/directive_validator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/format_validation.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/api_client.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/gate_evaluator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/metric_evaluator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/generate_logic_doc.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/tst_agent_enhancements.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/error_analyzer.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/display_data_model.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/generate_safety_docs.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/file_utils.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/event_formatter.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/planner.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/raw_advice_scanner.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/session.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/error_classifier.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/graph_nodes.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/plan_generator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/transport.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/r_factors.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/dry_run_manager.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/template_builder.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/docs_tools.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/structure_model.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/intent_classifier.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/validation_inspector.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/validation_history.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/directive_extractor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/config_loader.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/yaml_tools.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/file_metadata.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/kb_tags.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/memory.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/rate_limit_handler.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/__init__.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/workflow_engine.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/failure_diagnoser.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/hypothesis_evaluator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/phil_validator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/log_section_extractor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/phenix_utils.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/graph.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/mtz_inspector.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/pattern_manager.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/contract.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/nl_to_phil.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/best_files_tracker.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/utils.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/workflow_state.py -> build/lib/libtbx/langchain/agent creating build/lib/libtbx/langchain/log_extraction copying libtbx/langchain/log_extraction/run_measurements.py -> build/lib/libtbx/langchain/log_extraction copying libtbx/langchain/log_extraction/validate.py -> build/lib/libtbx/langchain/log_extraction copying libtbx/langchain/log_extraction/run_controls.py -> build/lib/libtbx/langchain/log_extraction copying libtbx/langchain/log_extraction/log_structure_extractor.py -> build/lib/libtbx/langchain/log_extraction copying libtbx/langchain/log_extraction/__init__.py -> build/lib/libtbx/langchain/log_extraction copying libtbx/langchain/log_extraction/corpus_paths.py -> build/lib/libtbx/langchain/log_extraction creating build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_api_schema.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/audit_phase_rename.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phil_namespace_cleaner.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_reason_prompt.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_safe_float_consolidation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_report_verifier.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_workflow_state.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_skip_promotion.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_silent_stop_abort_messages.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_new_programs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_file_utils.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_reactive_deviation_hold.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_default_models.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_solve_action_keywords.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_settings_list_coercion.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_advice_preprocessing.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_sequence_only_routing.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_action_item_1.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_validator_typo_hints.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_protocol_version.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_preprocessor_file_override.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase8_command_building.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_log_structure_extractor.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_workflow_complete_stop.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_hardcoded_cleanup.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_langchain_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_structure_model.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_spurious_stop_after_requested.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_best_files_tracker.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_extractor_grounding.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_ligandfit_patterns.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_analysis_request.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_extended_stop_phrasings.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_thinking_defense.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_fix_verification.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_llm_unavailable_notice.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase2b_activation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_yaml_config.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_backward_compat.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_extractor.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_program_registration.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_dock_and_stop.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_rfree_generate_guard.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_file_categorizer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_audit_fixes.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_step1f_single_emit.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_extraction_failure_visibility.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_history_analysis.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_sanity_checker.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_classify_mtz_type_001.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_generator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_utils.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_planning_framework.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_force_no_ai_server.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_h17_strip_executor.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_canary.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_validator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/canary_utils.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_standalone_consistency.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_agent_build_info.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_validate_file_overrides.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase3_bug5.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_yaml_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_autobuild_hl_recovery.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_command_builder.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_refine_final_rfree.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_program_identity.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_pattern_manager.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_rfree_resolution_stop.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_file_categorization.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_ligand_workflow_restart.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_session_directives.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_schema.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_initialize_plan_smoke.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_reasoning_command_divergence.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_v120_providers.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_mode_isolation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_v112_13_fixes.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_portkey_embedding_model.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_mtz_phases_session_blocking.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_validate_step_after_program_guard.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase4_history_flags.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_space_group_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_provider_error_classification.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_obs_labels_auto_fill.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_validation_history.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_provider_lock.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/test_api_keys.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_summary_file.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_transport_surfaces.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_optional_dep_resilience.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase1_contract_gaps.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_contract_compliance.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_event_system.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_diagnosed_failure_stop.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase3_serialization_symmetry.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_copies_tracking.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_diagnostic_messages.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_dry_run.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_decision_flow.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_log_extractor.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/run_all_tests.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_supported_providers_single_source.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_rfree_lock_reconciliation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_n_bugs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_state_serialization.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_event_formatter_file_categories.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_error_classifier.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_old_client_compat.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_skip_to_program.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_file_encoding.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_autobuild_sequence_waiver.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_session_summary.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_resume_reopen_stages.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directives_integration.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_metric_patterns.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_predict_and_build_no_ncs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_program_requirements.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_integration.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_rfree_flags_missing.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase2_path_consistency.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_error_analyzer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_rebuild_template_selection.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_explanation_prompts.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_cryoem_stop_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_placement_skip_rebuild.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_intent_classifier.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/__init__.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase7_routing_simulation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_strategy_memory.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_template.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_summary_display.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_shared_code_imports.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_user_advice_filter.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_data_input_filter.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_transport.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_docs_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_cc_key_extraction.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_autosol_bugs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase6_category_consumer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phaser_multimodel.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase0_static_audit.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_gate_evaluator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_hypothesis_evaluator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_raw_advice_scanner.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_abort_message_all_stops.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_dependencies.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_display_data_model.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_session_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_reason_codes.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phil_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_perceive_stop_checks.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_layer_diagnostics.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_condition_false_positive.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_grounding_stop_after_requested.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/analyze_tutorial_runs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_scenario_tracer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_mtz_crosscheck.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_lead_program_offer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_general_resolver.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_condition_fix.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_after_program_fill_from_raw.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_extract_raw_advice.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase9_llm_perturbation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_thinking_agent.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_fabricated_stop_condition.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_density_modify_experiment_type.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_simple_extractor_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_metrics_analyzer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_after_program_prompt.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase5_error_classification.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py -> build/lib/libtbx/langchain/tests creating build/lib/libtbx/langchain/strategies copying libtbx/langchain/strategies/base.py -> build/lib/libtbx/langchain/strategies copying libtbx/langchain/strategies/__init__.py -> build/lib/libtbx/langchain/strategies creating build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/_chroma_resilience.py -> build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/vector_store.py -> build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/retriever.py -> build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/__init__.py -> build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/document_loader.py -> build/lib/libtbx/langchain/rag creating build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/report_verifier.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/analyzer.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/state_extractor.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/log_info.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/agent_session_analyzer.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/__init__.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/analysis_request.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/summarizer.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/program_identity.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/orientation_strip.py -> build/lib/libtbx/langchain/analysis creating build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/run_utils.py -> build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/text_processing.py -> build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/query.py -> build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/__init__.py -> build/lib/libtbx/langchain/utils creating build/lib/libtbx/langchain/core copying libtbx/langchain/core/types.py -> build/lib/libtbx/langchain/core copying libtbx/langchain/core/_version.py -> build/lib/libtbx/langchain/core copying libtbx/langchain/core/llm.py -> build/lib/libtbx/langchain/core copying libtbx/langchain/core/__init__.py -> build/lib/libtbx/langchain/core copying libtbx/langchain/core/_build_info.py -> build/lib/libtbx/langchain/core creating build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/canary_check.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_directive_extraction.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_framework_self.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_c1_raw_authority.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_planning.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/__init__.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/framework.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/run_llm_tests.py -> build/lib/libtbx/langchain/tests/llm creating build/lib/libtbx/langchain/tests/integration copying libtbx/langchain/tests/integration/__init__.py -> build/lib/libtbx/langchain/tests/integration creating build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/polling.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/submission.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/util.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/transfer.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/__init__.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/status.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/errors.py -> build/lib/libtbx/queuing_system_utils/processing creating build/lib/libtbx/jobs/backends copying libtbx/jobs/backends/slurm.py -> build/lib/libtbx/jobs/backends copying libtbx/jobs/backends/local.py -> build/lib/libtbx/jobs/backends copying libtbx/jobs/backends/batch.py -> build/lib/libtbx/jobs/backends copying libtbx/jobs/backends/base.py -> build/lib/libtbx/jobs/backends copying libtbx/jobs/backends/__init__.py -> build/lib/libtbx/jobs/backends creating build/lib/cctbx_website/command_line copying cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/run_pdoc_cctbx_api.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/comment_to_docstring.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/tst_comment_to_docstring.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/edit_html.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/__init__.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/edit_for_boost.py -> build/lib/cctbx_website/command_line creating build/lib/cctbx_website/regression copying cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_15_doc_models_hierarchy.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_1_template.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_9_doc_maps_boxing.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_py_from_html.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/exercise.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_18_doc_programming_tips_2.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_19_doc_programming_tips_3.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_13_script_ideal_ss.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_10_doc_programming_tips_1.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/__init__.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_17_script_rfactors.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_2_doc_hlo_intro.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_8_doc_maps_intro.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_12_script_compare_ss.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_11_script_1.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> build/lib/cctbx_website/regression creating build/lib/cbflib_adaptbx/command_line copying cbflib_adaptbx/command_line/dump.py -> build/lib/cbflib_adaptbx/command_line copying cbflib_adaptbx/command_line/__init__.py -> build/lib/cbflib_adaptbx/command_line running egg_info creating cctbx.egg-info writing cctbx.egg-info/PKG-INFO writing dependency_links to cctbx.egg-info/dependency_links.txt writing requirements to cctbx.egg-info/requires.txt writing top-level names to cctbx.egg-info/top_level.txt writing manifest file 'cctbx.egg-info/SOURCES.txt' reading manifest file 'cctbx.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'cctbx.egg-info/SOURCES.txt' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/annlib_adaptbx creating build/bdist.linux-x86_64/wheel/annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/self_match.py -> build/bdist.linux-x86_64/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/sample.py -> build/bdist.linux-x86_64/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/__init__.py -> build/bdist.linux-x86_64/wheel/./annlib_adaptbx/annlib_adaptbx creating build/bdist.linux-x86_64/wheel/annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/source_generators/__init__.py -> build/bdist.linux-x86_64/wheel/./annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/source_generators/generate_all.py -> build/bdist.linux-x86_64/wheel/./annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/__init__.py -> build/bdist.linux-x86_64/wheel/./annlib_adaptbx copying build/lib/annlib_adaptbx/run_tests.py -> build/bdist.linux-x86_64/wheel/./annlib_adaptbx creating build/bdist.linux-x86_64/wheel/fftw3tbx copying build/lib/fftw3tbx/__init__.py -> build/bdist.linux-x86_64/wheel/./fftw3tbx copying build/lib/fftw3tbx/libtbx_refresh.py -> build/bdist.linux-x86_64/wheel/./fftw3tbx copying build/lib/fftw3tbx/tst_ext.py -> build/bdist.linux-x86_64/wheel/./fftw3tbx creating build/bdist.linux-x86_64/wheel/smtbx creating build/bdist.linux-x86_64/wheel/smtbx/command_line copying build/lib/smtbx/command_line/absolute_structure.py -> build/bdist.linux-x86_64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/refine.py -> build/bdist.linux-x86_64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/anom_refine.py -> build/bdist.linux-x86_64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/masks.py -> build/bdist.linux-x86_64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/benchmark_refinement.py -> build/bdist.linux-x86_64/wheel/./smtbx/command_line creating build/bdist.linux-x86_64/wheel/smtbx/stl copying build/lib/smtbx/stl/map.py -> build/bdist.linux-x86_64/wheel/./smtbx/stl copying build/lib/smtbx/stl/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/stl creating build/bdist.linux-x86_64/wheel/smtbx/masks copying build/lib/smtbx/masks/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/masks copying build/lib/smtbx/development.py -> build/bdist.linux-x86_64/wheel/./smtbx creating build/bdist.linux-x86_64/wheel/smtbx/array_family copying build/lib/smtbx/array_family/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/array_family creating build/bdist.linux-x86_64/wheel/smtbx/source_generators copying build/lib/smtbx/source_generators/flex_fwd_h.py -> build/bdist.linux-x86_64/wheel/./smtbx/source_generators copying build/lib/smtbx/source_generators/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/source_generators creating build/bdist.linux-x86_64/wheel/smtbx/regression creating build/bdist.linux-x86_64/wheel/smtbx/regression/test_data copying build/lib/smtbx/regression/test_data/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/regression/test_data copying build/lib/smtbx/regression/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/regression copying build/lib/smtbx/regression/tst_commandline_refine.py -> build/bdist.linux-x86_64/wheel/./smtbx/regression copying build/lib/smtbx/regression/tst_commandline_anomrefine.py -> build/bdist.linux-x86_64/wheel/./smtbx/regression creating build/bdist.linux-x86_64/wheel/smtbx/ab_initio creating build/bdist.linux-x86_64/wheel/smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/tst_charge_flipping.py -> build/bdist.linux-x86_64/wheel/./smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/tst_ab_initio_ext.py -> build/bdist.linux-x86_64/wheel/./smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/charge_flipping.py -> build/bdist.linux-x86_64/wheel/./smtbx/ab_initio copying build/lib/smtbx/ab_initio/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/ab_initio creating build/bdist.linux-x86_64/wheel/smtbx/refinement copying build/lib/smtbx/refinement/weighting_schemes.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement copying build/lib/smtbx/refinement/least_squares.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement copying build/lib/smtbx/refinement/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement creating build/bdist.linux-x86_64/wheel/smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/origin_fixing_restraints.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/adp_restraints.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/restraints creating build/bdist.linux-x86_64/wheel/smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/rigid.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/occupancy.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints creating build/bdist.linux-x86_64/wheel/smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/hydrogens.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/all.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints/geometrical creating build/bdist.linux-x86_64/wheel/smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_occupancies.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_direction.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_lbfgs.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_same_group.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_constrained_structure.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_reparametrisation.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_rigid.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_disorder.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/fpfdp.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/adp.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/site.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/all.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx copying build/lib/smtbx/run_tests.py -> build/bdist.linux-x86_64/wheel/./smtbx creating build/bdist.linux-x86_64/wheel/smtbx/absolute_structure copying build/lib/smtbx/absolute_structure/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/absolute_structure copying build/lib/smtbx/libtbx_refresh.py -> build/bdist.linux-x86_64/wheel/./smtbx creating build/bdist.linux-x86_64/wheel/smtbx/structure_factors copying build/lib/smtbx/structure_factors/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/structure_factors creating build/bdist.linux-x86_64/wheel/smtbx/structure_factors/direct copying build/lib/smtbx/structure_factors/direct/__init__.py -> build/bdist.linux-x86_64/wheel/./smtbx/structure_factors/direct copying build/lib/smtbx/utils.py -> build/bdist.linux-x86_64/wheel/./smtbx creating build/bdist.linux-x86_64/wheel/wxtbx copying build/lib/wxtbx/checklistctrl.py -> build/bdist.linux-x86_64/wheel/./wxtbx creating build/bdist.linux-x86_64/wheel/wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/choice_multi.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/path.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/tribool.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/floats.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/tree.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/unit_cell.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/space_group.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/array_label.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/numbers.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/text_base.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/strings.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/misc_ctrls.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/strctrl.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/choice.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/simple_dialogs.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/__init__.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/symop.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/ints.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/boolctrl.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/intctrl.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/floatctrl.py -> build/bdist.linux-x86_64/wheel/./wxtbx/phil_controls creating build/bdist.linux-x86_64/wheel/wxtbx/command_line copying build/lib/wxtbx/command_line/plan_sad_experiment.py -> build/bdist.linux-x86_64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/xtriage.py -> build/bdist.linux-x86_64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/plot_anomalous_scattering.py -> build/bdist.linux-x86_64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/anomalous_differences_histogram.py -> build/bdist.linux-x86_64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/show_file_info.py -> build/bdist.linux-x86_64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/pdb_statistics.py -> build/bdist.linux-x86_64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/loggraph.py -> build/bdist.linux-x86_64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/b_plot.py -> build/bdist.linux-x86_64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/pdb_editor.py -> build/bdist.linux-x86_64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/wxpython.py -> build/bdist.linux-x86_64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/inspect_r_free_flags.py -> build/bdist.linux-x86_64/wheel/./wxtbx/command_line copying build/lib/wxtbx/anomalous_scattering.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/bitmaps.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/metallicbutton.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/layout.py -> build/bdist.linux-x86_64/wheel/./wxtbx creating build/bdist.linux-x86_64/wheel/wxtbx/plots copying build/lib/wxtbx/plots/__init__.py -> build/bdist.linux-x86_64/wheel/./wxtbx/plots copying build/lib/wxtbx/plots/molprobity.py -> build/bdist.linux-x86_64/wheel/./wxtbx/plots copying build/lib/wxtbx/plots/emringer.py -> build/bdist.linux-x86_64/wheel/./wxtbx/plots copying build/lib/wxtbx/tables.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/adp_statistics.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/xtriage.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/windows.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/browser.py -> build/bdist.linux-x86_64/wheel/./wxtbx creating build/bdist.linux-x86_64/wheel/wxtbx/reports copying build/lib/wxtbx/reports/blast.py -> build/bdist.linux-x86_64/wheel/./wxtbx/reports copying build/lib/wxtbx/reports/pdb_symmetry.py -> build/bdist.linux-x86_64/wheel/./wxtbx/reports copying build/lib/wxtbx/reports/__init__.py -> build/bdist.linux-x86_64/wheel/./wxtbx/reports copying build/lib/wxtbx/monitor.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/custom_restraints.py -> build/bdist.linux-x86_64/wheel/./wxtbx creating build/bdist.linux-x86_64/wheel/wxtbx/regression copying build/lib/wxtbx/regression/tst_imports.py -> build/bdist.linux-x86_64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/_warnings.py -> build/bdist.linux-x86_64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/tst_headless_construct.py -> build/bdist.linux-x86_64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/tst_b_plot.py -> build/bdist.linux-x86_64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/__init__.py -> build/bdist.linux-x86_64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/tst_process_control.py -> build/bdist.linux-x86_64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/_headless_construct_cases.py -> build/bdist.linux-x86_64/wheel/./wxtbx/regression copying build/lib/wxtbx/sequence_view.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/listeditor.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/ensemble_validation.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/segmentedctrl.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/process_control.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/path_dialogs.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/symmetry_dialog.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/b_plot.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/qstat_view.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/heavy_atoms.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/__init__.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/mtz_dump.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/run_tests.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/errors.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/pdb_editor.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/misc_dialogs.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/polygon.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/app.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/polygon_db_viewer.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/icons.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/info_panels.py -> build/bdist.linux-x86_64/wheel/./wxtbx copying build/lib/wxtbx/utils.py -> build/bdist.linux-x86_64/wheel/./wxtbx creating build/bdist.linux-x86_64/wheel/cma_es copying build/lib/cma_es/cma_es_interface.py -> build/bdist.linux-x86_64/wheel/./cma_es copying build/lib/cma_es/__init__.py -> build/bdist.linux-x86_64/wheel/./cma_es copying build/lib/cma_es/run_tests.py -> build/bdist.linux-x86_64/wheel/./cma_es copying build/lib/cma_es/tst_cma_es.py -> build/bdist.linux-x86_64/wheel/./cma_es creating build/bdist.linux-x86_64/wheel/boost_adaptbx creating build/bdist.linux-x86_64/wheel/boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/show_platform_info.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/double_overflow.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/gcd.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/lcm.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/divide_by_zero.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/int_overflow.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/inexact.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/segmentation_fault.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/show_environ_usage.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/command_line creating build/bdist.linux-x86_64/wheel/boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/min_cut_max_flow.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/graph_structure_comparison.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/connected_component_algorithm.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/metric.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/utility.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/breadth_first_search.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/maximum_clique.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/__init__.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/clustering_algorithm.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/minimum_cut_enumerate.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/hybrid_times.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx creating build/bdist.linux-x86_64/wheel/boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/tuple.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/optional.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/std_pair.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/python.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/__init__.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/rational.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/__init__.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx copying build/lib/boost_adaptbx/run_tests.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx copying build/lib/boost_adaptbx/libtbx_refresh.py -> build/bdist.linux-x86_64/wheel/./boost_adaptbx creating build/bdist.linux-x86_64/wheel/gltbx creating build/bdist.linux-x86_64/wheel/gltbx/command_line copying build/lib/gltbx/command_line/try_imports.py -> build/bdist.linux-x86_64/wheel/./gltbx/command_line copying build/lib/gltbx/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./gltbx/command_line copying build/lib/gltbx/wx_scene.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/viewer_utils.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/wx_motion_on_tab.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/gl.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/images.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/generate_functions_bpl.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/wx_viewers_images.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/wx_viewer_example.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/generate_defines_bpl.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/glu.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/wx_cube.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/fonts.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/util.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/extract_opengl_specs.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/tst_fonts.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/wx_viewer.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/__init__.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/generate_fonts_ucs_cpp.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/quadrics.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/run_tests.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/gl_managed.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/wx_viewer_leapmotion.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/tst.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/tst_ellipsoids.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/tst_viewer_utils.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/libtbx_refresh.py -> build/bdist.linux-x86_64/wheel/./gltbx copying build/lib/gltbx/wx_ellipsoids_test.py -> build/bdist.linux-x86_64/wheel/./gltbx creating build/bdist.linux-x86_64/wheel/mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_bonds.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_map.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fmodel.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/remove_outliers.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rotalyze.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_model_distances.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdbtools.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/distance_difference.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/density_modification.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/models_as_chains.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/super.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/barbed_wire_analysis.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/arginine_geometry.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rama_z.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/suitename.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/polder.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_sequence.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reciprocal_space_arrays.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cif_as_mtz.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reduce_cryoem_resolution.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/plan_sad_experiment.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rebuild_rotarama_cache.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/comparama.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ringer.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mask.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/hbond.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xmanip.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/sisa.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fetch_pdb.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/chiral_validation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/verify_mon_lib_data.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mon_lib_cif_triage.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cbetadev.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_to_model_histogram.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xtrapol8.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/search_pdb_symmetry.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/taam_minus_iam.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cablam.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xtriage.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_idealization.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mtz2map.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/undowser2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/prune_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_data.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mp_validate_bonds.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/table_one.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/select_best_starting_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls_analysis.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/atom_valence_simple.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/dynamics.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/maximum_entropy_map.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validate_H_cl_app.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ligand_restraints_validation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/clashscore.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/suitename_old.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/next_gen_residue_typing.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fobs_minus_fobs_map.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_peaks_holes.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/secondary_structure_restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ramalyze.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cc_star.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/sort_hetatms.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/geometry_minimization.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/water_b_factors.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/emringer_score.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/debug_riding.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/holton_geometry_validation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/apply_ncs_to_ligand.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rebuild_cablam_cache.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/next_gen_atom_typing.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/maps.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ss_idealization.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/where_is_that_cif_file.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/process_predicted_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/angle.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/probe2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ribbons.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/perigee.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/altloc_remediate.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/f000.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/electrons.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reduce2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/development_aev.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rigid_bond_test.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/massage_data.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fab_elbow_angle.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/undowser.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_suites.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/grow_density.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/hydrogenate.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/probescore_ligand.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/real_space_diff_map.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/quantum_interface.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_comparison.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_tls_groups.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/matthews.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdb_interpretation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fake_f_obs.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rank_scale_map.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/estimate_bijvoet_ratio.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls_as_xyz.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/real_space_correlation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/superpose.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cablam_idealization.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/refine_anomalous_substructure.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/show_r_factors_by_shell.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_puckers.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/molprobity.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/clashscore2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdb_atom_selection.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mp_geo.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/kinemage.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/development_fem.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_box.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validate_ligands.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/r_factor_statistics.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/secondary_structure_validation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_residue_in_pdb.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validation_summary.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_map.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/prepare_pdb_deposition.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/nonbonded_overlaps.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_to_structure_factors.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/emringer.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/omegalyze.py -> build/bdist.linux-x86_64/wheel/./mmtbx/command_line creating build/bdist.linux-x86_64/wheel/mmtbx/rotamer copying build/lib/mmtbx/rotamer/n_dim_table.py -> build/bdist.linux-x86_64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/nqh.py -> build/bdist.linux-x86_64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/ramachandran_eval.py -> build/bdist.linux-x86_64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/ramachandran_eval_deprecated.py -> build/bdist.linux-x86_64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> build/bdist.linux-x86_64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/rotamer_eval.py -> build/bdist.linux-x86_64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/tst_rotamer_eval.py -> build/bdist.linux-x86_64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/graphics.py -> build/bdist.linux-x86_64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/sidechain_angles.py -> build/bdist.linux-x86_64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/map_tools.py -> build/bdist.linux-x86_64/wheel/./mmtbx copying build/lib/mmtbx/pdbtools.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/den copying build/lib/mmtbx/den/refinement.py -> build/bdist.linux-x86_64/wheel/./mmtbx/den copying build/lib/mmtbx/den/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/den copying build/lib/mmtbx/den/plot_weights.py -> build/bdist.linux-x86_64/wheel/./mmtbx/den creating build/bdist.linux-x86_64/wheel/mmtbx/twinning copying build/lib/mmtbx/twinning/probabalistic_detwinning.py -> build/bdist.linux-x86_64/wheel/./mmtbx/twinning copying build/lib/mmtbx/twinning/twin_f_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/twinning copying build/lib/mmtbx/twinning/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/twinning copying build/lib/mmtbx/resolve_resources.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/masks copying build/lib/mmtbx/masks/tst_masks.py -> build/bdist.linux-x86_64/wheel/./mmtbx/masks copying build/lib/mmtbx/masks/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/masks copying build/lib/mmtbx/masks/tst_asu_mask.py -> build/bdist.linux-x86_64/wheel/./mmtbx/masks creating build/bdist.linux-x86_64/wheel/mmtbx/probe copying build/lib/mmtbx/probe/tst_mmtbx_probe_ext.py -> build/bdist.linux-x86_64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> build/bdist.linux-x86_64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/Helpers.py -> build/bdist.linux-x86_64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/AtomTypes.py -> build/bdist.linux-x86_64/wheel/./mmtbx/probe creating build/bdist.linux-x86_64/wheel/mmtbx/solvent copying build/lib/mmtbx/solvent/map_to_water.py -> build/bdist.linux-x86_64/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/ordered_solvent.py -> build/bdist.linux-x86_64/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/ensemble_ordered_solvent.py -> build/bdist.linux-x86_64/wheel/./mmtbx/solvent creating build/bdist.linux-x86_64/wheel/mmtbx/reduce copying build/lib/mmtbx/reduce/InteractionGraph.py -> build/bdist.linux-x86_64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/Movers.py -> build/bdist.linux-x86_64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/tst_mmtbx_reduce_ext.py -> build/bdist.linux-x86_64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/Optimizers.py -> build/bdist.linux-x86_64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/reduce copying build/lib/mmtbx/xmanip.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/atomic_environment_vectors copying build/lib/mmtbx/atomic_environment_vectors/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/atomic_environment_vectors copying build/lib/mmtbx/atomic_environment_vectors/tst.py -> build/bdist.linux-x86_64/wheel/./mmtbx/atomic_environment_vectors copying build/lib/mmtbx/msa.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/maps copying build/lib/mmtbx/maps/map_model_cc.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/polder.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/xtrapol8.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/fem.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/fobs_minus_fobs_map.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_correlation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map_3.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/correlation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/kick.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/composite_omit_map.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/superpose.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/mtriage.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/maps creating build/bdist.linux-x86_64/wheel/mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/tst_segid.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/secondary_structure_params.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/ss_validation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/regularize_from_pdb.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/tst_insertion_codes.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/nucleic_acids.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/find_ss_from_ca.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/proteins.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/tst.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure creating build/bdist.linux-x86_64/wheel/mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_1.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/ss_idealization.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_3.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_io.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/pdb_symmetry.py -> build/bdist.linux-x86_64/wheel/./mmtbx copying build/lib/mmtbx/lattice.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/cif_parser.py -> build/bdist.linux-x86_64/wheel/./mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/tst.py -> build/bdist.linux-x86_64/wheel/./mmtbx/chemical_components copying build/lib/mmtbx/model_vs_data.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/geometry copying build/lib/mmtbx/geometry/asa.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/topology.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/sphere_surface_sampling.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/indexing.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/clash.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/shared_types.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/altloc.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry creating build/bdist.linux-x86_64/wheel/mmtbx/sisa creating build/bdist.linux-x86_64/wheel/mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_masks.py -> build/bdist.linux-x86_64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_ga.py -> build/bdist.linux-x86_64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_input.py -> build/bdist.linux-x86_64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_util.py -> build/bdist.linux-x86_64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_mtz.py -> build/bdist.linux-x86_64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_optimize.py -> build/bdist.linux-x86_64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/sisa copying build/lib/mmtbx/proq2.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/all_his.py -> build/bdist.linux-x86_64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/rotamer_manager.py -> build/bdist.linux-x86_64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/sample_rotamers.py -> build/bdist.linux-x86_64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/tst.py -> build/bdist.linux-x86_64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/pdb_distances.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/tls copying build/lib/mmtbx/tls/perm14.py -> build/bdist.linux-x86_64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm12.py -> build/bdist.linux-x86_64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/decompose.py -> build/bdist.linux-x86_64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm10.py -> build/bdist.linux-x86_64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm13.py -> build/bdist.linux-x86_64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm11.py -> build/bdist.linux-x86_64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/ladp.py -> build/bdist.linux-x86_64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm15.py -> build/bdist.linux-x86_64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/optimise_amplitudes.py -> build/bdist.linux-x86_64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/tools.py -> build/bdist.linux-x86_64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/analysis.py -> build/bdist.linux-x86_64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/tls_as_xyz.py -> build/bdist.linux-x86_64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/command_line.py -> build/bdist.linux-x86_64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/tls creating build/bdist.linux-x86_64/wheel/mmtbx/f_model copying build/lib/mmtbx/f_model/f_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/f_model copying build/lib/mmtbx/f_model/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/f_model copying build/lib/mmtbx/f_model/f_model_info.py -> build/bdist.linux-x86_64/wheel/./mmtbx/f_model creating build/bdist.linux-x86_64/wheel/mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_k.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/environment.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_geometries.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_parameters.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_ca.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_validate_ca.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_ca_svm.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_environment.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_approx_zn.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/halides.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_validate_mg.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_mg.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/geometry.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pickle.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/identify.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/build.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_symmetry_axis.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions creating build/bdist.linux-x86_64/wheel/mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/dump_sites.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/tst_classifier_01.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/tst_classifier_02.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ions creating build/bdist.linux-x86_64/wheel/mmtbx/density_modification copying build/lib/mmtbx/density_modification/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/density_modification copying build/lib/mmtbx/density_modification/tst_density_modification.py -> build/bdist.linux-x86_64/wheel/./mmtbx/density_modification creating build/bdist.linux-x86_64/wheel/mmtbx/polygon copying build/lib/mmtbx/polygon/tst_polygon_data.py -> build/bdist.linux-x86_64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/tst_gui.py -> build/bdist.linux-x86_64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/output.py -> build/bdist.linux-x86_64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/tst.py -> build/bdist.linux-x86_64/wheel/./mmtbx/polygon creating build/bdist.linux-x86_64/wheel/mmtbx/regression copying build/lib/mmtbx/regression/tst_clashes.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_box.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_anomalous_substructure.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ncs.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mtz2map.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rdkit_utils_molecule.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_1.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_altloc_chain_break.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_table_one.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_apply_cif_restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_vs_sequence.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_multi_residue_class.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_process_predicted_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validation_summary.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_metal_link_1.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_maps_misc.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_origin_ids.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_arginine_geometry.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_command_line_input.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cc_star.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands_4.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ss_structure_cif.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_fd.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sampled_model_density.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ordered_solvent.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rigid_bond_test.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_refine_anomalous_substructure.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_timeout.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/make_fake_anomalous_data.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_msa.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_custom_bond.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_schrodinger_interface.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_geo_min_restraints_phil.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_adp_restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_domains_from_pae.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression creating build/bdist.linux-x86_64/wheel/mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_as_xyz.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_get_t_scheme.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_analysis.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_refinement_fft.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tst_fmodel_no_cryst1.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ribbons.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_geometry_minimization.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_regularize_from_pdb.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_isomorphous_difference_misc.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_misc.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_special_term_at_end.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_ccs.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_add_h_to_water.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_models_to_from_chains.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_process_predicted_model_cif.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce2_no_symmetry.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_cryoem_resolution.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_prune_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ss_validation_long_chainids.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_loop_closure.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands_3.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_and_dm.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_regularize_from_pdb_cif.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression creating build/bdist.linux-x86_64/wheel/mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_utils_merge_models.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_merge.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_dedeuterate.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_cart_ref_restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_neutralize_scatterers.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_biomt_mtrix.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_ramachandran.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_symmetry.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_pairs_within.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_mtrix.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_get_vdw_radii.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_ncs.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_tors_ref_restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/tst_altloc_remediate.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_probe.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_map_model_cc.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ss_structure.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rank_scale_map.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_chain_comparison.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_4.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_examples.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sequence_validation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_scattering_type_registry.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_add_arrows_on_plot.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_scattering_table.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_flipping_his.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_dynamics_cli.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_3.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_alignment.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_real_space_correlation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ligand_interactions.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_vs_map.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_chain_comparison_cif.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_angle.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_switch.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ligand_ncs.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sort_hetatms.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression creating build/bdist.linux-x86_64/wheel/mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_search_flips.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_search.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/tst_domains_from_pae_cif.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_map_type_parser.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_holton_geometry_validation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cis_trans_peptide_link.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_psi_phi_extraction.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_minimize_chain.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ml_estimate.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rdkit_utils_fragmentation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_statistics_output.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_map.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ringer.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_pdbtools.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_lrv.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_superpose.py -> build/bdist.linux-x86_64/wheel/./mmtbx/regression creating build/bdist.linux-x86_64/wheel/mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/quantum_restraints_manager.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_c_beta_restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_manager.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_geo_file_parsing.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints creating build/bdist.linux-x86_64/wheel/mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/qm_manager.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_ramachandran.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_reference_coordinate2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/external.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/reference.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_orca_manager.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_replace_in_place.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/c_beta.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/mopac_manager.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/geo_file_parsing.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/base_qm_manager.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/xtb_manager.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/quantum_interface.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/afitt.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_xtb_manager.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_reference_coordinate.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/ramachandran.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/qi_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/orca_manager.py -> build/bdist.linux-x86_64/wheel/./mmtbx/geometry_restraints creating build/bdist.linux-x86_64/wheel/mmtbx/scaling copying build/lib/mmtbx/scaling/remove_outliers.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/bayesian_estimator.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/relative_wilson.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_xtriage_twin_analyses.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/relative_scaling.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/plan_sad_experiment.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/pair_analyses.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/twin_analyses.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/xtriage.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/pre_scale.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/sigmaa_estimation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/thorough_outlier_test.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_scaling.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absence_likelihood.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_outlier.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/massage_twin_detwin_data.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_sigmaa.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absolute_scaling.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/random_omit.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/data_statistics.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/make_param.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/fa_estimation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/matthews.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/twmad_scale.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_xtriage.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_bayesian_estimator.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absences.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_massage_data.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/ta_alpha_beta_calc.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/outlier_plots.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_mean_f_rms_f.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/outlier_rejection.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/mean_f_rms_f.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_plan_sad_experiment.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/basic_analyses.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_absences.py -> build/bdist.linux-x86_64/wheel/./mmtbx/scaling copying build/lib/mmtbx/arrays.py -> build/bdist.linux-x86_64/wheel/./mmtbx copying build/lib/mmtbx/process_predicted_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/disorder copying build/lib/mmtbx/disorder/tst_analyze_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst_backbone.py -> build/bdist.linux-x86_64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/analyze_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/backbone.py -> build/bdist.linux-x86_64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst.py -> build/bdist.linux-x86_64/wheel/./mmtbx/disorder creating build/bdist.linux-x86_64/wheel/mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/tst_rcsb_entry_request.py -> build/bdist.linux-x86_64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/rcsb_entry_request.py -> build/bdist.linux-x86_64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/rcsb_web_services.py -> build/bdist.linux-x86_64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/tst_rcsb_web_services.py -> build/bdist.linux-x86_64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/clashes.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/pair_interaction.py -> build/bdist.linux-x86_64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_04.py -> build/bdist.linux-x86_64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_00.py -> build/bdist.linux-x86_64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_01.py -> build/bdist.linux-x86_64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_02.py -> build/bdist.linux-x86_64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_05.py -> build/bdist.linux-x86_64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_03.py -> build/bdist.linux-x86_64/wheel/./mmtbx/pair_interaction creating build/bdist.linux-x86_64/wheel/mmtbx/refinement copying build/lib/mmtbx/refinement/rigid_body.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/flip_peptide_side_chain.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_real_space_simple.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization_ncs_constraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/weights_params.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/group.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/energy_monitor.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/weights.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_refinement_flags.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement creating build/bdist.linux-x86_64/wheel/mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/tst_select_best_starting_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/select_best_starting_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_rigid_body.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization_monitor.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/adp_refinement.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_occupancy_selections.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/geometry_minimization.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_misc.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_anomalous_scatterer_groups.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/anomalous_scatterer_groups.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_fit_rotamers.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/wrappers.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_group_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/print_statistics.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/occupancies.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/orca.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/inspect_tardy_trajectory.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement creating build/bdist.linux-x86_64/wheel/mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_1.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/rigid_body.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_water.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/occupancy.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/explode_and_refine.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/individual_sites.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_6.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_small_molecule.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_1.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_rigid_body.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_weight.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_selection.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_1H.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_4.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_1.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/adp.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_0H.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_his.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_3.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_residues.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_0.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_3.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_5.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_5.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_3.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_7.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_4.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_water.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_1H.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_6.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_monitor.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/weight.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_residue.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/tardy.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_group.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/data.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/targets.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/calculators.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/refinement_flags.py -> build/bdist.linux-x86_64/wheel/./mmtbx/refinement copying build/lib/mmtbx/grow_density.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/nci copying build/lib/mmtbx/nci/hbond.py -> build/bdist.linux-x86_64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/data_filtering.py -> build/bdist.linux-x86_64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/skew_kurt_plot.py -> build/bdist.linux-x86_64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/tst_hbond.py -> build/bdist.linux-x86_64/wheel/./mmtbx/nci creating build/bdist.linux-x86_64/wheel/mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_paral_geo.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_5.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_motif.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_glyco_hand.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/server.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_user_supplied_library.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_glyco_coordination.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/conformation_dependent_restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_mixins.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/geostd_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/mmtbx_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_correct_hydrogens.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/rotamer_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_linking.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_setup.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_selection.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/cif_types.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/conv_v2_v3.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_neutron_distance.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_3.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/hydrogen_restrictions.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/idealized_aa.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_superpose_ideal.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_cif_triage.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_metal_coordination.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/pdb_interpretation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/glyco_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_4.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/bondlength_defaults.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/correct_hydrogen_geometries.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_cif_types.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_all_cif_files.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rotamer_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_chg.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_deuterium_terminii.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_server.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_protein_interpretation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/cif_triage.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rna_dna_interpretation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_idealized_aa.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_carbo_linking.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/glyco_chiral_values.py -> build/bdist.linux-x86_64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/xmanip_tasks.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/ligands copying build/lib/mmtbx/ligands/tst_xtal_screens.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/hierarchy_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/tst_ready_set_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/ready_set_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/chemistry.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/ready_set_basics.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/electrons.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/rdkit_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/tst_electron_scripting.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/xtal_screens.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ligands creating build/bdist.linux-x86_64/wheel/mmtbx/model copying build/lib/mmtbx/model/model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/model copying build/lib/mmtbx/model/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/model copying build/lib/mmtbx/model/statistics.py -> build/bdist.linux-x86_64/wheel/./mmtbx/model copying build/lib/mmtbx/model/utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/model copying build/lib/mmtbx/model/restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/model copying build/lib/mmtbx/find_peaks.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/kinemage copying build/lib/mmtbx/kinemage/tst_validation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/validation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/ribbons.py -> build/bdist.linux-x86_64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/ribbon_rendering.py -> build/bdist.linux-x86_64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/nrubs.py -> build/bdist.linux-x86_64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/utils copying build/lib/mmtbx/utils/rotatable_bonds.py -> build/bdist.linux-x86_64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/ntc.py -> build/bdist.linux-x86_64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/fab_elbow_angle.py -> build/bdist.linux-x86_64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/grid2d.py -> build/bdist.linux-x86_64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/tst_switch_rotamers.py -> build/bdist.linux-x86_64/wheel/./mmtbx/utils creating build/bdist.linux-x86_64/wheel/mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_database.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/omega_database.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_svl_database.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/mcl.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/altloc_weighting.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/hpdl_database.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/testing_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_residue_class.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/LinkedResidues.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_setup.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_enol_peptide.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_base_class.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_rdl.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mutli_residue.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_hpdl.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_02.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/bond_angle_registry.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_03.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/rdl_database.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_omega_cdl.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/metal_coordination_library.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/rotamers.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/check_cdl_database.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/nucleotides.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_01.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/omega.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/density_dependent_restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/histidines.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/sf4_restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/enol_peptide_restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/hydrogen_bonding.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl_esd.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/conformation_dependent_library creating build/bdist.linux-x86_64/wheel/mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_8.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/specialised_hydrogen_atoms.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/validate_H.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_const_dihedral.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/riding.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_15.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/connectivity.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/build_hydrogens.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_5.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_3.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_time.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_7.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_7.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/parameterization.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_6.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_validate_H.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_9.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_4.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_9.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_4.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_14.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_8.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_12.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_1.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_11.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_13.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_3.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_manager.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/reduce_hydrogen.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_6.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_minimize.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/neutron_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_5.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_10.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_connectivity.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_1.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_5.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_coefficients.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_1.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_3.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_16.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_4.py -> build/bdist.linux-x86_64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/run_tests.py -> build/bdist.linux-x86_64/wheel/./mmtbx copying build/lib/mmtbx/real_space_correlation.py -> build/bdist.linux-x86_64/wheel/./mmtbx copying build/lib/mmtbx/superpose.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/rsr copying build/lib/mmtbx/rsr/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/rsr copying build/lib/mmtbx/rsr/tst.py -> build/bdist.linux-x86_64/wheel/./mmtbx/rsr creating build/bdist.linux-x86_64/wheel/mmtbx/building copying build/lib/mmtbx/building/tst_extend_sidechains_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building copying build/lib/mmtbx/building/extend_sidechains.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building creating build/bdist.linux-x86_64/wheel/mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/ccd.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/berkeley_ramalyze.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/starting_conformations.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/tst_extend_sidechains.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building copying build/lib/mmtbx/building/minimize_chain.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building copying build/lib/mmtbx/building/loop_idealization.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building creating build/bdist.linux-x86_64/wheel/mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/tst_00.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/lifi.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building copying build/lib/mmtbx/building/merge_models.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building copying build/lib/mmtbx/building/cablam_idealization.py -> build/bdist.linux-x86_64/wheel/./mmtbx/building creating build/bdist.linux-x86_64/wheel/mmtbx/ringer copying build/lib/mmtbx/ringer/em_rscc.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/tst_em_rscc.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_rolling.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_scoring.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/tst_emringer.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/emringer.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ringer creating build/bdist.linux-x86_64/wheel/mmtbx/alignment copying build/lib/mmtbx/alignment/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/alignment creating build/bdist.linux-x86_64/wheel/mmtbx/dynamics copying build/lib/mmtbx/dynamics/ensemble_cd.py -> build/bdist.linux-x86_64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/tst_sa.py -> build/bdist.linux-x86_64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/simulated_annealing.py -> build/bdist.linux-x86_64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/cartesian_dynamics.py -> build/bdist.linux-x86_64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/constants.py -> build/bdist.linux-x86_64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/tst_cartesian_dynamics.py -> build/bdist.linux-x86_64/wheel/./mmtbx/dynamics creating build/bdist.linux-x86_64/wheel/mmtbx/ias copying build/lib/mmtbx/ias/tst_ias.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ias copying build/lib/mmtbx/ias/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ias creating build/bdist.linux-x86_64/wheel/mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/kbu_refinery.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/scaler.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_mosaic.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/f_model_all_scales.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/example.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_flat_nonuniform.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/example2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_scaler.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_aniso_scaler.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/mosaic.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> build/bdist.linux-x86_64/wheel/./mmtbx/bulk_solvent creating build/bdist.linux-x86_64/wheel/mmtbx/max_lik copying build/lib/mmtbx/max_lik/tst_max_lik.py -> build/bdist.linux-x86_64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/tst_maxlik.py -> build/bdist.linux-x86_64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/max_like_non_uniform.py -> build/bdist.linux-x86_64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/maxlik.py -> build/bdist.linux-x86_64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/libtbx_refresh.py -> build/bdist.linux-x86_64/wheel/./mmtbx copying build/lib/mmtbx/f_model_info.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/mmtbx/ncs copying build/lib/mmtbx/ncs/ligands.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/cartesian_restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/tncs.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_params.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_search.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_restraints_group_list.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/ncs creating build/bdist.linux-x86_64/wheel/mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_bonds.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/fmodel.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rotalyze.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/pdbtools.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/barbed_wire_analysis.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/arginine_geometry.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rama_z.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/suitename.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/polder.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/model_vs_sequence.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/reduce_cryoem_resolution.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/comparama.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/mask.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/pdb_as_cif.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/hbond.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/chiral_validation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cbetadev.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/xtrapol8.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/taam_minus_iam.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cablam.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/undowser2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/mp_validate_bonds.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/atom_valence_simple.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ss_validation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ligand_restraints_validation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/clashscore.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/suitename_old.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/next_gen_residue_typing.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ramalyze.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/water_b_factors.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/debug_riding.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/holton_geometry_validation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/elbow_services.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/next_gen_atom_typing.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ss_idealization.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/process_predicted_model.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/probe2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ribbons.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/atom_selection.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/reduce2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/undowser.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_suites.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/hydrogenate.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/probescore_ligand.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/quantum_interface.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/matthews.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/real_space_correlation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cablam_idealization.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_puckers.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/clashscore2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/validate_ligands.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/fetch.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/prepare_pdb_deposition.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/nonbonded_overlaps.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/emringer.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/omegalyze.py -> build/bdist.linux-x86_64/wheel/./mmtbx/programs creating build/bdist.linux-x86_64/wheel/mmtbx/real_space copying build/lib/mmtbx/real_space/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/real_space copying build/lib/mmtbx/real_space/tst.py -> build/bdist.linux-x86_64/wheel/./mmtbx/real_space creating build/bdist.linux-x86_64/wheel/mmtbx/suitename copying build/lib/mmtbx/suitename/suitealyze.py -> build/bdist.linux-x86_64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitename.py -> build/bdist.linux-x86_64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suiteninput.py -> build/bdist.linux-x86_64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/diangle.py -> build/bdist.linux-x86_64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitenamedefs.py -> build/bdist.linux-x86_64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/dualparse.py -> build/bdist.linux-x86_64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/mainchain.py -> build/bdist.linux-x86_64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/transdent.py -> build/bdist.linux-x86_64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suites.py -> build/bdist.linux-x86_64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitenout.py -> build/bdist.linux-x86_64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suiteninit.py -> build/bdist.linux-x86_64/wheel/./mmtbx/suitename creating build/bdist.linux-x86_64/wheel/mmtbx/validation copying build/lib/mmtbx/validation/cbd_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ligands.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/rotalyze.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/barbed_wire_analysis.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/comprehensive_residue.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/rama_z.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ligand_interactions.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/fav_lists.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/comparama.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation creating build/bdist.linux-x86_64/wheel/mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/ramachandran/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/ramachandran/convert_from_text.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/cbetadev.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_PRO_phi_psi.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cablam.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/undowser2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/datasets.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mp_validate_bonds.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_others_phi_psi.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/clashscore.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ramalyze.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/holton_geometry_validation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation creating build/bdist.linux-x86_64/wheel/mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_waters.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_4.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_clashscore_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rama_z_02.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_validate_bonds.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rna_validate.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cablam.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze_rare.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_5.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_experimental.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_do_flips_clashscore.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_1.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_model_properties.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_find_region_max_value.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_barbed_wire_analysis.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo_endtoend.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_omegalyze.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cablam_2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rotalyze.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cbetadev_02.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_arguments.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_suitename.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_symmetry_SS.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_undowser2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_3.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_clashscore.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rama_z_01.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_undowser.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_keep_hydrogens.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cbetadev.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/run_restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_chiral_validation.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/sequence.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/analyze_peptides.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/undowser.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/experimental.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/waters.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/model_properties.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ensembles.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/clashscore2.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation creating build/bdist.linux-x86_64/wheel/mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/percentile_clashscore.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/kinemage_templates.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/probescore_ligand.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/__init__.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/percentile_mpscore.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/mp_geo.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/table_from_json.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/phi_psi_2_data.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/graphics.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/chain_comparison.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/validate_ligands.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/rna_validate.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/convert_lists.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/utils.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/omegalyze.py -> build/bdist.linux-x86_64/wheel/./mmtbx/validation copying build/lib/mmtbx/invariant_domain.py -> build/bdist.linux-x86_64/wheel/./mmtbx copying build/lib/mmtbx/restraints.py -> build/bdist.linux-x86_64/wheel/./mmtbx copying build/lib/mmtbx/domains_from_pae.py -> build/bdist.linux-x86_64/wheel/./mmtbx creating build/bdist.linux-x86_64/wheel/fable creating build/bdist.linux-x86_64/wheel/fable/command_line copying build/lib/fable/command_line/show_calls.py -> build/bdist.linux-x86_64/wheel/./fable/command_line copying build/lib/fable/command_line/split.py -> build/bdist.linux-x86_64/wheel/./fable/command_line copying build/lib/fable/command_line/cout.py -> build/bdist.linux-x86_64/wheel/./fable/command_line copying build/lib/fable/command_line/read.py -> build/bdist.linux-x86_64/wheel/./fable/command_line copying build/lib/fable/command_line/insert_write_at_start_of_each_procedure.py -> build/bdist.linux-x86_64/wheel/./fable/command_line copying build/lib/fable/command_line/fem_include_search_paths.py -> build/bdist.linux-x86_64/wheel/./fable/command_line copying build/lib/fable/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./fable/command_line copying build/lib/fable/simple_compilation.py -> build/bdist.linux-x86_64/wheel/./fable copying build/lib/fable/intrinsics.py -> build/bdist.linux-x86_64/wheel/./fable copying build/lib/fable/tst_cout_compile.py -> build/bdist.linux-x86_64/wheel/./fable copying build/lib/fable/cout.py -> build/bdist.linux-x86_64/wheel/./fable copying build/lib/fable/equivalence.py -> build/bdist.linux-x86_64/wheel/./fable copying build/lib/fable/read.py -> build/bdist.linux-x86_64/wheel/./fable copying build/lib/fable/__init__.py -> build/bdist.linux-x86_64/wheel/./fable copying build/lib/fable/run_tests.py -> build/bdist.linux-x86_64/wheel/./fable copying build/lib/fable/tokenization.py -> build/bdist.linux-x86_64/wheel/./fable copying build/lib/fable/tst_equivalence.py -> build/bdist.linux-x86_64/wheel/./fable copying build/lib/fable/tst_read.py -> build/bdist.linux-x86_64/wheel/./fable copying build/lib/fable/tst_ext.py -> build/bdist.linux-x86_64/wheel/./fable copying build/lib/fable/utils.py -> build/bdist.linux-x86_64/wheel/./fable copying build/lib/fable/tst_cout.py -> build/bdist.linux-x86_64/wheel/./fable creating build/bdist.linux-x86_64/wheel/rstbx creating build/bdist.linux-x86_64/wheel/rstbx/command_line copying build/lib/rstbx/command_line/simage.solver.py -> build/bdist.linux-x86_64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.explore_completeness.py -> build/bdist.linux-x86_64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/viewer.py -> build/bdist.linux-x86_64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/slip_viewer.py -> build/bdist.linux-x86_64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.create.py -> build/bdist.linux-x86_64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.wx_display.py -> build/bdist.linux-x86_64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/index.py -> build/bdist.linux-x86_64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/example_viewer.py -> build/bdist.linux-x86_64/wheel/./rstbx/command_line creating build/bdist.linux-x86_64/wheel/rstbx/symmetry copying build/lib/rstbx/symmetry/subgroup.py -> build/bdist.linux-x86_64/wheel/./rstbx/symmetry copying build/lib/rstbx/symmetry/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/symmetry creating build/bdist.linux-x86_64/wheel/rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/g_gradients.py -> build/bdist.linux-x86_64/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/parameter_reduction.py -> build/bdist.linux-x86_64/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/sgtbx_adaptor.py -> build/bdist.linux-x86_64/wheel/./rstbx/symmetry creating build/bdist.linux-x86_64/wheel/rstbx/dps_core copying build/lib/rstbx/dps_core/tst_iotbx_converter.py -> build/bdist.linux-x86_64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/cell_assessment.py -> build/bdist.linux-x86_64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/constrainment.py -> build/bdist.linux-x86_64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/basis_choice.py -> build/bdist.linux-x86_64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/lepage.py -> build/bdist.linux-x86_64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/sampling.py -> build/bdist.linux-x86_64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/zuoreduction.py -> build/bdist.linux-x86_64/wheel/./rstbx/dps_core creating build/bdist.linux-x86_64/wheel/rstbx/bandpass copying build/lib/rstbx/bandpass/simulated_annealing.py -> build/bdist.linux-x86_64/wheel/./rstbx/bandpass copying build/lib/rstbx/bandpass/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/bandpass creating build/bdist.linux-x86_64/wheel/rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2.py -> build/bdist.linux-x86_64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2a.py -> build/bdist.linux-x86_64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_positions.py -> build/bdist.linux-x86_64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/ersatz_misset.py -> build/bdist.linux-x86_64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_positions_idx.py -> build/bdist.linux-x86_64/wheel/./rstbx/bpcx creating build/bdist.linux-x86_64/wheel/rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/instrument_specifics.py -> build/bdist.linux-x86_64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/tst_detector_model.py -> build/bdist.linux-x86_64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/detector.py -> build/bdist.linux-x86_64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/compare_mosflm_xds.py -> build/bdist.linux-x86_64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_validate.py -> build/bdist.linux-x86_64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/bpcx creating build/bdist.linux-x86_64/wheel/rstbx/outlier_spots copying build/lib/rstbx/outlier_spots/fit_distribution.py -> build/bdist.linux-x86_64/wheel/./rstbx/outlier_spots copying build/lib/rstbx/outlier_spots/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/outlier_spots creating build/bdist.linux-x86_64/wheel/rstbx/new_horizons copying build/lib/rstbx/new_horizons/spot_shape.py -> build/bdist.linux-x86_64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/speckfinder.py -> build/bdist.linux-x86_64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/pixel_spread.py -> build/bdist.linux-x86_64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/stats_index.py -> build/bdist.linux-x86_64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/oscillation_shots.py -> build/bdist.linux-x86_64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/index.py -> build/bdist.linux-x86_64/wheel/./rstbx/new_horizons creating build/bdist.linux-x86_64/wheel/rstbx/simulation copying build/lib/rstbx/simulation/sim_utils.py -> build/bdist.linux-x86_64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/tst_xfel1_simple.py -> build/bdist.linux-x86_64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/sim_pdf.py -> build/bdist.linux-x86_64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/constants.py -> build/bdist.linux-x86_64/wheel/./rstbx/simulation creating build/bdist.linux-x86_64/wheel/rstbx/diffraction copying build/lib/rstbx/diffraction/tst_predict.py -> build/bdist.linux-x86_64/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/tst_partial_derivatives.py -> build/bdist.linux-x86_64/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/tst_ewald_sphere.py -> build/bdist.linux-x86_64/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/diffraction creating build/bdist.linux-x86_64/wheel/rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/tst_utils_clustering.py -> build/bdist.linux-x86_64/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> build/bdist.linux-x86_64/wheel/./rstbx/diffraction/fastbragg creating build/bdist.linux-x86_64/wheel/rstbx/dials_core copying build/lib/rstbx/dials_core/integration_core.py -> build/bdist.linux-x86_64/wheel/./rstbx/dials_core copying build/lib/rstbx/dials_core/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/dials_core creating build/bdist.linux-x86_64/wheel/rstbx/array_family copying build/lib/rstbx/array_family/flex.py -> build/bdist.linux-x86_64/wheel/./rstbx/array_family copying build/lib/rstbx/array_family/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/array_family creating build/bdist.linux-x86_64/wheel/rstbx/phil copying build/lib/rstbx/phil/scope.py -> build/bdist.linux-x86_64/wheel/./rstbx/phil copying build/lib/rstbx/phil/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/phil copying build/lib/rstbx/phil/preferences.py -> build/bdist.linux-x86_64/wheel/./rstbx/phil copying build/lib/rstbx/phil/phil_preferences.py -> build/bdist.linux-x86_64/wheel/./rstbx/phil creating build/bdist.linux-x86_64/wheel/rstbx/apps copying build/lib/rstbx/apps/spot_markup.py -> build/bdist.linux-x86_64/wheel/./rstbx/apps copying build/lib/rstbx/apps/dual_resolution_helpers.py -> build/bdist.linux-x86_64/wheel/./rstbx/apps copying build/lib/rstbx/apps/slip_helpers.py -> build/bdist.linux-x86_64/wheel/./rstbx/apps creating build/bdist.linux-x86_64/wheel/rstbx/apps/stills copying build/lib/rstbx/apps/stills/stills_integration.py -> build/bdist.linux-x86_64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/dials_refinement_preceding_integration.py -> build/bdist.linux-x86_64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/simple_integration.py -> build/bdist.linux-x86_64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/util.py -> build/bdist.linux-x86_64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> build/bdist.linux-x86_64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/apps creating build/bdist.linux-x86_64/wheel/rstbx/cftbx copying build/lib/rstbx/cftbx/tst_coordinate_frame_converter.py -> build/bdist.linux-x86_64/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/coordinate_frame_converter.py -> build/bdist.linux-x86_64/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/coordinate_frame_helpers.py -> build/bdist.linux-x86_64/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/cftbx creating build/bdist.linux-x86_64/wheel/rstbx/simage copying build/lib/rstbx/simage/run_labelit_index.py -> build/bdist.linux-x86_64/wheel/./rstbx/simage copying build/lib/rstbx/simage/refine_uc_cr.py -> build/bdist.linux-x86_64/wheel/./rstbx/simage copying build/lib/rstbx/simage/explore_completeness.py -> build/bdist.linux-x86_64/wheel/./rstbx/simage copying build/lib/rstbx/simage/run_spotfinder.py -> build/bdist.linux-x86_64/wheel/./rstbx/simage copying build/lib/rstbx/simage/integrate_crude.py -> build/bdist.linux-x86_64/wheel/./rstbx/simage copying build/lib/rstbx/simage/create.py -> build/bdist.linux-x86_64/wheel/./rstbx/simage copying build/lib/rstbx/simage/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/simage copying build/lib/rstbx/simage/solver.py -> build/bdist.linux-x86_64/wheel/./rstbx/simage copying build/lib/rstbx/simage/tst.py -> build/bdist.linux-x86_64/wheel/./rstbx/simage copying build/lib/rstbx/simage/wx_display.py -> build/bdist.linux-x86_64/wheel/./rstbx/simage creating build/bdist.linux-x86_64/wheel/rstbx/viewer copying build/lib/rstbx/viewer/pixels3d.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/integration.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/controls.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/spotfinder_wrap.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/calibration_frame.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/calibration.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/processing.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/display.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/results_base.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/indexing.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/drivers.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/tst.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/dataset.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/frame.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/spotfinder_frame.py -> build/bdist.linux-x86_64/wheel/./rstbx/viewer creating build/bdist.linux-x86_64/wheel/rstbx/detectors copying build/lib/rstbx/detectors/silicon.py -> build/bdist.linux-x86_64/wheel/./rstbx/detectors copying build/lib/rstbx/detectors/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/detectors copying build/lib/rstbx/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx copying build/lib/rstbx/run_tests.py -> build/bdist.linux-x86_64/wheel/./rstbx creating build/bdist.linux-x86_64/wheel/rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/tst_sublattice.py -> build/bdist.linux-x86_64/wheel/./rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/change_basis.py -> build/bdist.linux-x86_64/wheel/./rstbx/sublattice_support creating build/bdist.linux-x86_64/wheel/rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/ring_frame.py -> build/bdist.linux-x86_64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/tile_generation.py -> build/bdist.linux-x86_64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/uc_frame.py -> build/bdist.linux-x86_64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/slip_display.py -> build/bdist.linux-x86_64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/slip_viewer_image_factory.py -> build/bdist.linux-x86_64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/pyslip.py -> build/bdist.linux-x86_64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/calibration_frame.py -> build/bdist.linux-x86_64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/score_frame.py -> build/bdist.linux-x86_64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/example_frame_plugin_hidden.py -> build/bdist.linux-x86_64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/frame.py -> build/bdist.linux-x86_64/wheel/./rstbx/slip_viewer creating build/bdist.linux-x86_64/wheel/rstbx/indexing copying build/lib/rstbx/indexing/do_index.py -> build/bdist.linux-x86_64/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/tst_auto_monoscan.py -> build/bdist.linux-x86_64/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/tst_dataset1.py -> build/bdist.linux-x86_64/wheel/./rstbx/indexing creating build/bdist.linux-x86_64/wheel/rstbx/indexing_api copying build/lib/rstbx/indexing_api/test_dps.py -> build/bdist.linux-x86_64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/lattice.py -> build/bdist.linux-x86_64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/tools.py -> build/bdist.linux-x86_64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/force_cell.py -> build/bdist.linux-x86_64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/basis_choice.py -> build/bdist.linux-x86_64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/nearest_neighbor.py -> build/bdist.linux-x86_64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/__init__.py -> build/bdist.linux-x86_64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/sampling.py -> build/bdist.linux-x86_64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/outlier_procedure.py -> build/bdist.linux-x86_64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/outlier_detection.py -> build/bdist.linux-x86_64/wheel/./rstbx/indexing_api copying build/lib/rstbx/utils.py -> build/bdist.linux-x86_64/wheel/./rstbx creating build/bdist.linux-x86_64/wheel/spotfinder creating build/bdist.linux-x86_64/wheel/spotfinder/command_line copying build/lib/spotfinder/command_line/image_viewer.py -> build/bdist.linux-x86_64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/thin_client.py -> build/bdist.linux-x86_64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/signal_strength.py -> build/bdist.linux-x86_64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/sweep_strength.py -> build/bdist.linux-x86_64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/find_active_area.py -> build/bdist.linux-x86_64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/mp_spotfinder_server_read_file.py -> build/bdist.linux-x86_64/wheel/./spotfinder/command_line creating build/bdist.linux-x86_64/wheel/spotfinder/math_support copying build/lib/spotfinder/math_support/sphere_formulae.py -> build/bdist.linux-x86_64/wheel/./spotfinder/math_support copying build/lib/spotfinder/math_support/__init__.py -> build/bdist.linux-x86_64/wheel/./spotfinder/math_support creating build/bdist.linux-x86_64/wheel/spotfinder/core_toolbox copying build/lib/spotfinder/core_toolbox/close_spots_detail.py -> build/bdist.linux-x86_64/wheel/./spotfinder/core_toolbox copying build/lib/spotfinder/core_toolbox/__init__.py -> build/bdist.linux-x86_64/wheel/./spotfinder/core_toolbox creating build/bdist.linux-x86_64/wheel/spotfinder/diffraction copying build/lib/spotfinder/diffraction/imagefiles.py -> build/bdist.linux-x86_64/wheel/./spotfinder/diffraction copying build/lib/spotfinder/diffraction/__init__.py -> build/bdist.linux-x86_64/wheel/./spotfinder/diffraction copying build/lib/spotfinder/diffraction/geometry.py -> build/bdist.linux-x86_64/wheel/./spotfinder/diffraction creating build/bdist.linux-x86_64/wheel/spotfinder/applications copying build/lib/spotfinder/applications/image_viewer.py -> build/bdist.linux-x86_64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/signal_strength.py -> build/bdist.linux-x86_64/wheel/./spotfinder/applications creating build/bdist.linux-x86_64/wheel/spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/correction_vector_plot.py -> build/bdist.linux-x86_64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/cxi_phil.py -> build/bdist.linux-x86_64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/__init__.py -> build/bdist.linux-x86_64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/cxi_run3.py -> build/bdist.linux-x86_64/wheel/./spotfinder/applications/xfel creating build/bdist.linux-x86_64/wheel/spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/__init__.py -> build/bdist.linux-x86_64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/ice_nztt.py -> build/bdist.linux-x86_64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/spotreporter.py -> build/bdist.linux-x86_64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/method2_resolution.py -> build/bdist.linux-x86_64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/ice2.py -> build/bdist.linux-x86_64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/stats_distl.py -> build/bdist.linux-x86_64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/wrappers.py -> build/bdist.linux-x86_64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/practical_heuristics.py -> build/bdist.linux-x86_64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/__init__.py -> build/bdist.linux-x86_64/wheel/./spotfinder/applications creating build/bdist.linux-x86_64/wheel/spotfinder/array_family copying build/lib/spotfinder/array_family/flex.py -> build/bdist.linux-x86_64/wheel/./spotfinder/array_family copying build/lib/spotfinder/array_family/__init__.py -> build/bdist.linux-x86_64/wheel/./spotfinder/array_family creating build/bdist.linux-x86_64/wheel/spotfinder/dxtbx_toolbox copying build/lib/spotfinder/dxtbx_toolbox/practical_heuristics.py -> build/bdist.linux-x86_64/wheel/./spotfinder/dxtbx_toolbox copying build/lib/spotfinder/dxtbx_toolbox/__init__.py -> build/bdist.linux-x86_64/wheel/./spotfinder/dxtbx_toolbox copying build/lib/spotfinder/__init__.py -> build/bdist.linux-x86_64/wheel/./spotfinder copying build/lib/spotfinder/run_tests.py -> build/bdist.linux-x86_64/wheel/./spotfinder creating build/bdist.linux-x86_64/wheel/spotfinder/servers copying build/lib/spotfinder/servers/apache.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_dials.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_utils.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_bcsb.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/thin_client.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/spotfinder_server_read_file.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/spotfinder_server_client_push.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/general_client_example.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/bcsb_client_example.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/specific_client_example.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/multipart_encoder.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/pilatus_client.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/adsc_client.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/__init__.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/mp_spotfinder_server_read_file.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/mp_spotfinder_server_is_alive.py -> build/bdist.linux-x86_64/wheel/./spotfinder/servers copying build/lib/spotfinder/exception.py -> build/bdist.linux-x86_64/wheel/./spotfinder creating build/bdist.linux-x86_64/wheel/iotbx creating build/bdist.linux-x86_64/wheel/iotbx/command_line copying build/lib/iotbx/command_line/shelx.as_xray_structure.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.as_miller_arrays.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_remediator.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/simple_map_coefficients.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/split_data_cif.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/sort_atoms.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/french_wilson.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/build_phil_cache.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/phil.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_as_cif.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/show_distances.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/detector_image_as_png.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/explore_metric_symmetry.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.superpose_centers_of_mass.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/flip_symmetric_amino_acids.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/unique_with_biomt.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_completion_simple.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_cif_conversion.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_converter.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/blast_pdb.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/get_pubmed_citation.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/lattice_symmetry.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.sdb_reader.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.transfer_crystal_symmetry.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_statistics.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_labels_comparison.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_as_fasta.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_labels_diff.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.as_xray_structure.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reindex.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/patterson_map.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif_as_pdb.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_get_citation.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_accumulation.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_reader.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.print_sequence.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/dano_as_amplitudes.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/poscar_as_xray_structure.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns_as_mtz.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_add_conformations.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.box_around_molecule.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/dtrek.to_cns.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtz_as_cif.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.join_fragment_files.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/show_systematic_absences.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtz.dump.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.superpose_atoms_by_name.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_as_cns.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtrix_reconstruction.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/effective_resolution.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_editor.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.b_factor_stats.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.validate.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.as_xray_structure.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/biomt_reconstruction.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.reflection_reader.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cbf_read.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.insert_scale_records.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_show_connectivity.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.dump_as_python.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/emma.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_split_models.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/file_reader.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/merging_statistics.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/export_scalepack_unmerged.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/csv_as_mtz.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.hierarchy.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/crystal_symmetry_from_any.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/xplor.map.show_summary.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.as_cif.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/distance_least_squares.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/symmetry_search.py -> build/bdist.linux-x86_64/wheel/./iotbx/command_line creating build/bdist.linux-x86_64/wheel/iotbx/examples copying build/lib/iotbx/examples/pdb_hierarchy.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples copying build/lib/iotbx/examples/mtz_free_flipper.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_symmetry_copies.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples copying build/lib/iotbx/examples/recalculate_phenix_refine_r_factors.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples creating build/bdist.linux-x86_64/wheel/iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v3_better.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v2_simple.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/tst.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples copying build/lib/iotbx/examples/tst_mtz_free_flipper.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples copying build/lib/iotbx/examples/libtbx_phil_examples.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples copying build/lib/iotbx/examples/direct_methods_light.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_tardy_conf_sampling_simple.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_to_map_simple.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_shake.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdbx_mmcif_tutorial.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_split_chains.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples copying build/lib/iotbx/examples/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples copying build/lib/iotbx/examples/prepare_model_for_rsr.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples copying build/lib/iotbx/examples/mtz_convert_free_to_work.py -> build/bdist.linux-x86_64/wheel/./iotbx/examples copying build/lib/iotbx/poscar.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/cif_mtz_data_labels.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/map_tools.py -> build/bdist.linux-x86_64/wheel/./iotbx creating build/bdist.linux-x86_64/wheel/iotbx/shelx copying build/lib/iotbx/shelx/parsers.py -> build/bdist.linux-x86_64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_writer.py -> build/bdist.linux-x86_64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_lex_parse_build.py -> build/bdist.linux-x86_64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/lexer.py -> build/bdist.linux-x86_64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/hklf.py -> build/bdist.linux-x86_64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_fvar_encoding.py -> build/bdist.linux-x86_64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tokens.py -> build/bdist.linux-x86_64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/fvar_encoding.py -> build/bdist.linux-x86_64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/writer.py -> build/bdist.linux-x86_64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_hklf.py -> build/bdist.linux-x86_64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/crystal_symmetry_from_ins.py -> build/bdist.linux-x86_64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/write_ins.py -> build/bdist.linux-x86_64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/errors.py -> build/bdist.linux-x86_64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/fcf.py -> build/bdist.linux-x86_64/wheel/./iotbx/shelx copying build/lib/iotbx/data_plots.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/phil.py -> build/bdist.linux-x86_64/wheel/./iotbx creating build/bdist.linux-x86_64/wheel/iotbx/dtrek copying build/lib/iotbx/dtrek/reflnlist_reader.py -> build/bdist.linux-x86_64/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/crystal_symmetry_from_ref.py -> build/bdist.linux-x86_64/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/dtrek_symmetry_dict.py -> build/bdist.linux-x86_64/wheel/./iotbx/dtrek creating build/bdist.linux-x86_64/wheel/iotbx/fullprof copying build/lib/iotbx/fullprof/read_pcr.py -> build/bdist.linux-x86_64/wheel/./iotbx/fullprof copying build/lib/iotbx/fullprof/write_pcr.py -> build/bdist.linux-x86_64/wheel/./iotbx/fullprof copying build/lib/iotbx/fullprof/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/fullprof creating build/bdist.linux-x86_64/wheel/iotbx/file_io copying build/lib/iotbx/file_io/reader.py -> build/bdist.linux-x86_64/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/text_detection.py -> build/bdist.linux-x86_64/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/detection.py -> build/bdist.linux-x86_64/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/_maps.py -> build/bdist.linux-x86_64/wheel/./iotbx/file_io creating build/bdist.linux-x86_64/wheel/iotbx/xds copying build/lib/iotbx/xds/xparm.py -> build/bdist.linux-x86_64/wheel/./iotbx/xds copying build/lib/iotbx/xds/xds_inp.py -> build/bdist.linux-x86_64/wheel/./iotbx/xds copying build/lib/iotbx/xds/gain_cbf.py -> build/bdist.linux-x86_64/wheel/./iotbx/xds copying build/lib/iotbx/xds/integrate_hkl.py -> build/bdist.linux-x86_64/wheel/./iotbx/xds copying build/lib/iotbx/xds/spot_xds.py -> build/bdist.linux-x86_64/wheel/./iotbx/xds copying build/lib/iotbx/xds/blank_cbf.py -> build/bdist.linux-x86_64/wheel/./iotbx/xds copying build/lib/iotbx/xds/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/xds copying build/lib/iotbx/xds/geometry.py -> build/bdist.linux-x86_64/wheel/./iotbx/xds copying build/lib/iotbx/xds/read_ascii.py -> build/bdist.linux-x86_64/wheel/./iotbx/xds copying build/lib/iotbx/xds/correction.py -> build/bdist.linux-x86_64/wheel/./iotbx/xds copying build/lib/iotbx/xds/xds_cbf.py -> build/bdist.linux-x86_64/wheel/./iotbx/xds copying build/lib/iotbx/xds/crystal_symmetry_from_hkl.py -> build/bdist.linux-x86_64/wheel/./iotbx/xds copying build/lib/iotbx/pymol.py -> build/bdist.linux-x86_64/wheel/./iotbx creating build/bdist.linux-x86_64/wheel/iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/tst.py -> build/bdist.linux-x86_64/wheel/./iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> build/bdist.linux-x86_64/wheel/./iotbx/ccp4_map copying build/lib/iotbx/logfiles.py -> build/bdist.linux-x86_64/wheel/./iotbx creating build/bdist.linux-x86_64/wheel/iotbx/xplor copying build/lib/iotbx/xplor/tst_xplormap.py -> build/bdist.linux-x86_64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/crystal_symmetry_from_map.py -> build/bdist.linux-x86_64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/map.py -> build/bdist.linux-x86_64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/ext.py -> build/bdist.linux-x86_64/wheel/./iotbx/xplor copying build/lib/iotbx/reflection_file_converter.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/table_one.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/simple_parser.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/map_model_manager.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/csv_utils.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/reflection_file_utils.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/phases.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/builders.py -> build/bdist.linux-x86_64/wheel/./iotbx creating build/bdist.linux-x86_64/wheel/iotbx/regression copying build/lib/iotbx/regression/tst_file_io.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_statistics.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_call_consistency.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_4.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager_wrapping.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_link_records.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_generate_n_char_string.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_add_conformations.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_2.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_wildcard.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_group_rounding.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_atom_selections_10k.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cif_1.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_2.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_simple_parser.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_file_reader.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_editor.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_show_systematic_absences.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_split_models.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_input.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_4.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cli_parser.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mrc_io.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_3.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_patterson.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_segids.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_copy_select.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_1.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_simple_map_coefficients.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_as_cif.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdbx_mmcif_tutorial.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_cif_cells.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mtz_as_cif.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_fetch.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_pdb_v3.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_3.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_local_resolution_10.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_phil.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_multimodel.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_reader.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_bioinformatics.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_occupancies_rounding.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_box_around_molecule.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_symmetry.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_export_scalepack_unmerged.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_miller_sort_asu.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_all_chain_ids.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_split_data_cif.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_sort_atoms.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager_2.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_examples.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_utils.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_cif.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_merging_statistics.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_as_fasta.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_cif_inputs.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_text_detection.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_poscar.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_csv_utils.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reindex.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_data_manager.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression creating build/bdist.linux-x86_64/wheel/iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_user_selections.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_without_validation.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_input.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_reordered_chains.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_ligs.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/tst_selected_hierarchy_flip.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_altlocs.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_restraints_merge.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_xray_scale.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_to_from_hierarchy.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_id_str.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_data_plots.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_phases.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_lattice_symmetry.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_crystal_symmetry_from_any.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/utils.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_tools.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_extract_xtal_data.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cif_as_pdb_1atom.py -> build/bdist.linux-x86_64/wheel/./iotbx/regression copying build/lib/iotbx/builders_depending_on_smtbx.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/reflection_file_reader.py -> build/bdist.linux-x86_64/wheel/./iotbx creating build/bdist.linux-x86_64/wheel/iotbx/data_manager copying build/lib/iotbx/data_manager/model.py -> build/bdist.linux-x86_64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/phil.py -> build/bdist.linux-x86_64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/ncs_spec.py -> build/bdist.linux-x86_64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/sequence.py -> build/bdist.linux-x86_64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/common.py -> build/bdist.linux-x86_64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/json.py -> build/bdist.linux-x86_64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/miller_array.py -> build/bdist.linux-x86_64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/real_map.py -> build/bdist.linux-x86_64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/yaml.py -> build/bdist.linux-x86_64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/restraint.py -> build/bdist.linux-x86_64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/map_coefficients.py -> build/bdist.linux-x86_64/wheel/./iotbx/data_manager creating build/bdist.linux-x86_64/wheel/iotbx/PrettyPrint copying build/lib/iotbx/PrettyPrint/tables.py -> build/bdist.linux-x86_64/wheel/./iotbx/PrettyPrint copying build/lib/iotbx/PrettyPrint/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/PrettyPrint creating build/bdist.linux-x86_64/wheel/iotbx/dsn6 copying build/lib/iotbx/dsn6/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/dsn6 copying build/lib/iotbx/dsn6/tst.py -> build/bdist.linux-x86_64/wheel/./iotbx/dsn6 creating build/bdist.linux-x86_64/wheel/iotbx/cif copying build/lib/iotbx/cif/citations.py -> build/bdist.linux-x86_64/wheel/./iotbx/cif copying build/lib/iotbx/cif/model.py -> build/bdist.linux-x86_64/wheel/./iotbx/cif copying build/lib/iotbx/cif/builders.py -> build/bdist.linux-x86_64/wheel/./iotbx/cif copying build/lib/iotbx/cif/validation.py -> build/bdist.linux-x86_64/wheel/./iotbx/cif copying build/lib/iotbx/cif/restraint_file_merge.py -> build/bdist.linux-x86_64/wheel/./iotbx/cif copying build/lib/iotbx/cif/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/cif copying build/lib/iotbx/cif/geometry.py -> build/bdist.linux-x86_64/wheel/./iotbx/cif copying build/lib/iotbx/cif/errors.py -> build/bdist.linux-x86_64/wheel/./iotbx/cif copying build/lib/iotbx/cif/crystal_symmetry_from_cif.py -> build/bdist.linux-x86_64/wheel/./iotbx/cif copying build/lib/iotbx/cif/restraints.py -> build/bdist.linux-x86_64/wheel/./iotbx/cif copying build/lib/iotbx/cif/cod_tools.py -> build/bdist.linux-x86_64/wheel/./iotbx/cif creating build/bdist.linux-x86_64/wheel/iotbx/solve copying build/lib/iotbx/solve/crystal_symmetry_from_inp.py -> build/bdist.linux-x86_64/wheel/./iotbx/solve copying build/lib/iotbx/solve/fpfm_reader.py -> build/bdist.linux-x86_64/wheel/./iotbx/solve copying build/lib/iotbx/solve/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/solve creating build/bdist.linux-x86_64/wheel/iotbx/mtz copying build/lib/iotbx/mtz/tst_miller_dict.py -> build/bdist.linux-x86_64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_unmerged.py -> build/bdist.linux-x86_64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_extract_from_symmetry_lib.py -> build/bdist.linux-x86_64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_dano.py -> build/bdist.linux-x86_64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/extract_from_symmetry_lib.py -> build/bdist.linux-x86_64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/crystal_symmetry_from_mtz.py -> build/bdist.linux-x86_64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst.py -> build/bdist.linux-x86_64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_ext.py -> build/bdist.linux-x86_64/wheel/./iotbx/mtz copying build/lib/iotbx/extract_xtal_data.py -> build/bdist.linux-x86_64/wheel/./iotbx creating build/bdist.linux-x86_64/wheel/iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/pdb_info.py -> build/bdist.linux-x86_64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/pubmed.py -> build/bdist.linux-x86_64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/local_blast.py -> build/bdist.linux-x86_64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/xmlbuild.py -> build/bdist.linux-x86_64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/ncbi_blast_xml.py -> build/bdist.linux-x86_64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/ebi_wu_blast_xml.py -> build/bdist.linux-x86_64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/homologues.py -> build/bdist.linux-x86_64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/alignment_as_hsearch.py -> build/bdist.linux-x86_64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/structure.py -> build/bdist.linux-x86_64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/wildcard.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/option_parser.py -> build/bdist.linux-x86_64/wheel/./iotbx creating build/bdist.linux-x86_64/wheel/iotbx/scalepack copying build/lib/iotbx/scalepack/tst_merge.py -> build/bdist.linux-x86_64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/tst_no_merge_original_index.py -> build/bdist.linux-x86_64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/merge.py -> build/bdist.linux-x86_64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/no_merge_original_index.py -> build/bdist.linux-x86_64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/space_group_dictionary.py -> build/bdist.linux-x86_64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/crystal_symmetry_from_hkl.py -> build/bdist.linux-x86_64/wheel/./iotbx/scalepack copying build/lib/iotbx/symmetry.py -> build/bdist.linux-x86_64/wheel/./iotbx creating build/bdist.linux-x86_64/wheel/iotbx/detectors copying build/lib/iotbx/detectors/tst_adsc.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/macscience.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/dtrek.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_py_cbf.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_cbf_comp_read_meth.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/cbf.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/test_mar.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/detectorbase.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/adsc.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/noir.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/edf.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/pilatus_slice.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/raxisbase.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/adsc_module.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/mar.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/adsc_minicbf.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors creating build/bdist.linux-x86_64/wheel/iotbx/detectors/context copying build/lib/iotbx/detectors/context/endstation_max_iv_trial.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/spot_xy_convention.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/config_detector.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/endstation.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/camera_convention.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/tst_detectors.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/generic_detector.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_debug_write.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/eiger.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/saturn.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/beam_center_convention.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/pilatus_minicbf.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/eiger_minicbf.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/hamamatsu.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors creating build/bdist.linux-x86_64/wheel/iotbx/detectors/util copying build/lib/iotbx/detectors/util/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors/util copying build/lib/iotbx/detectors/util/filters.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors/util copying build/lib/iotbx/detectors/url_support.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/test_raxis2.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/raxis.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/bruker.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/marIP.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/active_area_filter.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/raxis_nonsquare.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/image_from_http_request.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/cspad_detector_formats.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/npy.py -> build/bdist.linux-x86_64/wheel/./iotbx/detectors copying build/lib/iotbx/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/ranges.py -> build/bdist.linux-x86_64/wheel/./iotbx creating build/bdist.linux-x86_64/wheel/iotbx/gui_tools copying build/lib/iotbx/gui_tools/import_data_and_flags.py -> build/bdist.linux-x86_64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/reflections.py -> build/bdist.linux-x86_64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/cif_conversions.py -> build/bdist.linux-x86_64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/models.py -> build/bdist.linux-x86_64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/tst.py -> build/bdist.linux-x86_64/wheel/./iotbx/gui_tools copying build/lib/iotbx/reflection_file_editor.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/run_tests.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/map_manager.py -> build/bdist.linux-x86_64/wheel/./iotbx creating build/bdist.linux-x86_64/wheel/iotbx/mrcfile copying build/lib/iotbx/mrcfile/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/mrcfile copying build/lib/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> build/bdist.linux-x86_64/wheel/./iotbx/mrcfile creating build/bdist.linux-x86_64/wheel/iotbx/kriber copying build/lib/iotbx/kriber/strudat.py -> build/bdist.linux-x86_64/wheel/./iotbx/kriber copying build/lib/iotbx/kriber/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/kriber copying build/lib/iotbx/kriber/tst_strudat.py -> build/bdist.linux-x86_64/wheel/./iotbx/kriber copying build/lib/iotbx/libtbx_refresh.py -> build/bdist.linux-x86_64/wheel/./iotbx creating build/bdist.linux-x86_64/wheel/iotbx/pdb copying build/lib/iotbx/pdb/download.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_rna_dna_atom_names.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_290_interpretation.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/cryst1_interpretation.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/amino_acid_codes.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_flip_symmetric.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/aa_utils.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/nucleic_acid_codes.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_secondary_structure.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_2_interpretation.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/web_service_api.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/mmcif.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_selection.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_3_interpretation.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_secondary_structure_2.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_utils.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/pdbe.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/extract_rfactors_resolutions_sigma.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/modified_aa_names.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/hierarchy.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/atom_name_interpretation.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/secondary_structure.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_selection_string.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/experiment_type.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_atom_sort.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_pdb.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/atom_selection.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/xray_structure.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_read_mtrix_records_from_cif.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_input_pickling.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/rna_dna_detection.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif_hierarchy.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/modified_rna_dna_names.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/hybrid_36.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb creating build/bdist.linux-x86_64/wheel/iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/remediator.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/tst_remediator.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/tst_atom_name_interpretation.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/rcsb.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_tls.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/misc_records_output.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif_hierarchy_2.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/crystal_symmetry_from_pdb.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/fetch.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/records.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_ext.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/utils.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/pdb_v3_cif_conversion.py -> build/bdist.linux-x86_64/wheel/./iotbx/pdb creating build/bdist.linux-x86_64/wheel/iotbx/ncs copying build/lib/iotbx/ncs/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/ncs copying build/lib/iotbx/file_reader.py -> build/bdist.linux-x86_64/wheel/./iotbx creating build/bdist.linux-x86_64/wheel/iotbx/programs copying build/lib/iotbx/programs/split_data_cif.py -> build/bdist.linux-x86_64/wheel/./iotbx/programs copying build/lib/iotbx/programs/unique_with_biomt.py -> build/bdist.linux-x86_64/wheel/./iotbx/programs copying build/lib/iotbx/programs/box_around_molecule.py -> build/bdist.linux-x86_64/wheel/./iotbx/programs copying build/lib/iotbx/programs/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/programs copying build/lib/iotbx/cli_parser.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/merging_statistics.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/format.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/crystal_symmetry_from_any.py -> build/bdist.linux-x86_64/wheel/./iotbx copying build/lib/iotbx/mtrix_biomt.py -> build/bdist.linux-x86_64/wheel/./iotbx creating build/bdist.linux-x86_64/wheel/iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_from_inp.py -> build/bdist.linux-x86_64/wheel/./iotbx/cns copying build/lib/iotbx/cns/reflection_reader.py -> build/bdist.linux-x86_64/wheel/./iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_utils.py -> build/bdist.linux-x86_64/wheel/./iotbx/cns copying build/lib/iotbx/cns/sdb_reader.py -> build/bdist.linux-x86_64/wheel/./iotbx/cns copying build/lib/iotbx/cns/sdb_writer.py -> build/bdist.linux-x86_64/wheel/./iotbx/cns copying build/lib/iotbx/cns/tst_cns.py -> build/bdist.linux-x86_64/wheel/./iotbx/cns copying build/lib/iotbx/cns/xray_structure.py -> build/bdist.linux-x86_64/wheel/./iotbx/cns copying build/lib/iotbx/cns/miller_array.py -> build/bdist.linux-x86_64/wheel/./iotbx/cns copying build/lib/iotbx/cns/__init__.py -> build/bdist.linux-x86_64/wheel/./iotbx/cns copying build/lib/iotbx/cns/space_group_symbols.py -> build/bdist.linux-x86_64/wheel/./iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_from_sdb.py -> build/bdist.linux-x86_64/wheel/./iotbx/cns copying build/lib/iotbx/cns/pdb_remarks.py -> build/bdist.linux-x86_64/wheel/./iotbx/cns copying build/lib/iotbx/cns/index_fobs_sigma_reader.py -> build/bdist.linux-x86_64/wheel/./iotbx/cns creating build/bdist.linux-x86_64/wheel/qttbx creating build/bdist.linux-x86_64/wheel/qttbx/examples copying build/lib/qttbx/examples/data_manager_example.py -> build/bdist.linux-x86_64/wheel/./qttbx/examples copying build/lib/qttbx/examples/__init__.py -> build/bdist.linux-x86_64/wheel/./qttbx/examples copying build/lib/qttbx/examples/_helpers.py -> build/bdist.linux-x86_64/wheel/./qttbx/examples copying build/lib/qttbx/examples/phil_widgets_example.py -> build/bdist.linux-x86_64/wheel/./qttbx/examples copying build/lib/qttbx/qt.py -> build/bdist.linux-x86_64/wheel/./qttbx copying build/lib/qttbx/phil.py -> build/bdist.linux-x86_64/wheel/./qttbx creating build/bdist.linux-x86_64/wheel/qttbx/widgets creating build/bdist.linux-x86_64/wheel/qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/search_bar.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/logging_setup.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/conversation_view.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/eliding.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/tool_call_disclosure.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/edge_rail.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat creating build/bdist.linux-x86_64/wheel/qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/profile.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/subagent.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/approval.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/tools.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/paths.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/session.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/events.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/runner.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/base.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/storage.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/conversation.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/mcp_client.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/__init__.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/skills.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/errors.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/chat_top_bar.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/artifact.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/auto_height.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/question_card.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/markdown_export.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/diagnostics.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/artifact_panel.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/conversation_search.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/__init__.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/conversation_list.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/credentials_dialog.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/message_bubble.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/markdown_view.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/image_lightbox.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/overlay_anchor.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/tool_approval.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/image_cache.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/message_input.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/chat creating build/bdist.linux-x86_64/wheel/qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/int_widget.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/words_widget.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/str_widget.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/multiple.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/key_widget.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/float_widget.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/_colors.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/unit_cell.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/delegate.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/path_widget.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/choice_widget.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/space_group.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/text_base.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/ints_widget.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/atom_selection.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/floats_widget.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/bool_widget.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/__init__.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/qstr_widget.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/strings_widget.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/phil creating build/bdist.linux-x86_64/wheel/qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_binding_popup.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/widget.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_phil_helpers.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/__init__.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_delegate.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_table_model.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/__init__.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets copying build/lib/qttbx/widgets/font_init.py -> build/bdist.linux-x86_64/wheel/./qttbx/widgets creating build/bdist.linux-x86_64/wheel/qttbx/regression copying build/lib/qttbx/regression/tst_chat_message_bubble.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_tool_approval.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_overlay_anchor.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_auto_height.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_run_tests_manifest.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_credentials_dialog.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_artifact_panel.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_conversation_widgets.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_profile.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_session.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_approval_coordinator.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_tools.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_storage.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_skills.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_image.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_data_manager_widget.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_agent_core.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_runner.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_phil_widgets.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_mcp_client.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_question_card.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_markdown.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_eliding.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_diagnostics.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_message_input.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_subagent.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/__init__.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_storage_session.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_subagent_view.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_logging_setup.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_search.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_window_chrome.py -> build/bdist.linux-x86_64/wheel/./qttbx/regression copying build/lib/qttbx/__init__.py -> build/bdist.linux-x86_64/wheel/./qttbx copying build/lib/qttbx/run_tests.py -> build/bdist.linux-x86_64/wheel/./qttbx creating build/bdist.linux-x86_64/wheel/qttbx/viewers copying build/lib/qttbx/viewers/__init__.py -> build/bdist.linux-x86_64/wheel/./qttbx/viewers copying build/lib/qttbx/viewers/chimerax.py -> build/bdist.linux-x86_64/wheel/./qttbx/viewers creating build/bdist.linux-x86_64/wheel/simtbx creating build/bdist.linux-x86_64/wheel/simtbx/gpu copying build/lib/simtbx/gpu/tst_shoeboxes.py -> build/bdist.linux-x86_64/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/tst_gpu_multisource_background.py -> build/bdist.linux-x86_64/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/__init__.py -> build/bdist.linux-x86_64/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/tst_exafel_api.py -> build/bdist.linux-x86_64/wheel/./simtbx/gpu creating build/bdist.linux-x86_64/wheel/simtbx/kokkos copying build/lib/simtbx/kokkos/tst_kokkos_lib.py -> build/bdist.linux-x86_64/wheel/./simtbx/kokkos copying build/lib/simtbx/kokkos/__init__.py -> build/bdist.linux-x86_64/wheel/./simtbx/kokkos creating build/bdist.linux-x86_64/wheel/simtbx/pixel copying build/lib/simtbx/pixel/__init__.py -> build/bdist.linux-x86_64/wheel/./simtbx/pixel creating build/bdist.linux-x86_64/wheel/simtbx/diffBragg copying build/lib/simtbx/diffBragg/ensemble_refine_launcher.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/phil.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/psf.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/attr_list.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/device.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg creating build/bdist.linux-x86_64/wheel/simtbx/diffBragg/refiners creating build/bdist.linux-x86_64/wheel/simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/manager.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/__init__.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/parameters.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/stage_two_refiner.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/__init__.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/geometry.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/base_refiner.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/hopper_io.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/mpi_logger.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_ensemble_utils.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_utils.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/prep_stage2_input.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/stage_two_utils.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/__init__.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/parameter_errors.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/utils.py -> build/bdist.linux-x86_64/wheel/./simtbx/diffBragg copying build/lib/simtbx/__init__.py -> build/bdist.linux-x86_64/wheel/./simtbx copying build/lib/simtbx/run_tests.py -> build/bdist.linux-x86_64/wheel/./simtbx creating build/bdist.linux-x86_64/wheel/simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_crystal.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_init.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_input.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_multisource_background.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_minimal.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_basic.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gaussian_mosaicity.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/sim_data.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_beam.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_threads.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/__init__.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gauss_argchk.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_frames.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/anisotropic_mosaicity.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/utils.py -> build/bdist.linux-x86_64/wheel/./simtbx/nanoBragg creating build/bdist.linux-x86_64/wheel/simtbx/modeling copying build/lib/simtbx/modeling/FormatHDF5AttributeGeometry.py -> build/bdist.linux-x86_64/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/__init__.py -> build/bdist.linux-x86_64/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/forward_models.py -> build/bdist.linux-x86_64/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/predictions.py -> build/bdist.linux-x86_64/wheel/./simtbx/modeling creating build/bdist.linux-x86_64/wheel/omptbx copying build/lib/omptbx/__init__.py -> build/bdist.linux-x86_64/wheel/./omptbx copying build/lib/omptbx/tst.py -> build/bdist.linux-x86_64/wheel/./omptbx creating build/bdist.linux-x86_64/wheel/xcif creating build/bdist.linux-x86_64/wheel/xcif/regression copying build/lib/xcif/regression/tst_bindings.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_example_tokenize.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_utf8.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_pdb_coordinates.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_iotbx_cif_reader_parity.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_gil_release.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_semicolon_field_strict.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_string_interning.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_quoted_string_delimiter.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_non_strict_mode.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_example_parse.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_memory.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_iotbx_cif_reader_engine.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_api_compat.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_roundtrip.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/__init__.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_parse_verify.py -> build/bdist.linux-x86_64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_pdb_sf.py -> build/bdist.linux-x86_64/wheel/./xcif/regression creating build/bdist.linux-x86_64/wheel/xcif/benchmarks copying build/lib/xcif/benchmarks/__init__.py -> build/bdist.linux-x86_64/wheel/./xcif/benchmarks copying build/lib/xcif/benchmarks/run_benchmarks.py -> build/bdist.linux-x86_64/wheel/./xcif/benchmarks copying build/lib/xcif/__init__.py -> build/bdist.linux-x86_64/wheel/./xcif copying build/lib/xcif/run_tests.py -> build/bdist.linux-x86_64/wheel/./xcif creating build/bdist.linux-x86_64/wheel/fast_linalg copying build/lib/fast_linalg/__init__.py -> build/bdist.linux-x86_64/wheel/./fast_linalg creating build/bdist.linux-x86_64/wheel/serialtbx creating build/bdist.linux-x86_64/wheel/serialtbx/detector creating build/bdist.linux-x86_64/wheel/serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/metrology.py -> build/bdist.linux-x86_64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/generic_detector.py -> build/bdist.linux-x86_64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/__init__.py -> build/bdist.linux-x86_64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/cspad_detector.py -> build/bdist.linux-x86_64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/rayonix.py -> build/bdist.linux-x86_64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/cspad.py -> build/bdist.linux-x86_64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/__init__.py -> build/bdist.linux-x86_64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/xtc.py -> build/bdist.linux-x86_64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/jungfrau.py -> build/bdist.linux-x86_64/wheel/./serialtbx/detector creating build/bdist.linux-x86_64/wheel/serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/util.py -> build/bdist.linux-x86_64/wheel/./serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/__init__.py -> build/bdist.linux-x86_64/wheel/./serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/max_like.py -> build/bdist.linux-x86_64/wheel/./serialtbx/mono_simulation copying build/lib/serialtbx/__init__.py -> build/bdist.linux-x86_64/wheel/./serialtbx creating build/bdist.linux-x86_64/wheel/serialtbx/util copying build/lib/serialtbx/util/energy_scan_notch_finder.py -> build/bdist.linux-x86_64/wheel/./serialtbx/util copying build/lib/serialtbx/util/construct_frame.py -> build/bdist.linux-x86_64/wheel/./serialtbx/util copying build/lib/serialtbx/util/__init__.py -> build/bdist.linux-x86_64/wheel/./serialtbx/util copying build/lib/serialtbx/util/time.py -> build/bdist.linux-x86_64/wheel/./serialtbx/util creating build/bdist.linux-x86_64/wheel/scitbx creating build/bdist.linux-x86_64/wheel/scitbx/command_line copying build/lib/scitbx/command_line/show_sizes.py -> build/bdist.linux-x86_64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/histogram.py -> build/bdist.linux-x86_64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/generate_error_h.py -> build/bdist.linux-x86_64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/show_exp_times.py -> build/bdist.linux-x86_64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/apply_tapenade_hints.py -> build/bdist.linux-x86_64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/unicode_examples.py -> build/bdist.linux-x86_64/wheel/./scitbx/command_line creating build/bdist.linux-x86_64/wheel/scitbx/examples copying build/lib/scitbx/examples/bootstrap.py -> build/bdist.linux-x86_64/wheel/./scitbx/examples copying build/lib/scitbx/examples/integrating_a_weighted_sinc_function.py -> build/bdist.linux-x86_64/wheel/./scitbx/examples copying build/lib/scitbx/examples/functions.py -> build/bdist.linux-x86_64/wheel/./scitbx/examples copying build/lib/scitbx/examples/minimizer_comparisons.py -> build/bdist.linux-x86_64/wheel/./scitbx/examples copying build/lib/scitbx/examples/lbfgs_linear_least_squares_fit.py -> build/bdist.linux-x86_64/wheel/./scitbx/examples copying build/lib/scitbx/examples/flex_array_loops.py -> build/bdist.linux-x86_64/wheel/./scitbx/examples copying build/lib/scitbx/examples/principal_axes_of_inertia.py -> build/bdist.linux-x86_64/wheel/./scitbx/examples copying build/lib/scitbx/examples/immoptibox_ports.py -> build/bdist.linux-x86_64/wheel/./scitbx/examples copying build/lib/scitbx/examples/chebyshev_lsq_example.py -> build/bdist.linux-x86_64/wheel/./scitbx/examples copying build/lib/scitbx/examples/flex_grid.py -> build/bdist.linux-x86_64/wheel/./scitbx/examples copying build/lib/scitbx/examples/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/examples copying build/lib/scitbx/examples/lbfgs_recipe.py -> build/bdist.linux-x86_64/wheel/./scitbx/examples creating build/bdist.linux-x86_64/wheel/scitbx/examples/bevington copying build/lib/scitbx/examples/bevington/silver.py -> build/bdist.linux-x86_64/wheel/./scitbx/examples/bevington copying build/lib/scitbx/examples/bevington/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/examples/bevington copying build/lib/scitbx/examples/rigid_body_refinement_core.py -> build/bdist.linux-x86_64/wheel/./scitbx/examples copying build/lib/scitbx/simplex.py -> build/bdist.linux-x86_64/wheel/./scitbx creating build/bdist.linux-x86_64/wheel/scitbx/stl copying build/lib/scitbx/stl/tst_map.py -> build/bdist.linux-x86_64/wheel/./scitbx/stl copying build/lib/scitbx/stl/vector.py -> build/bdist.linux-x86_64/wheel/./scitbx/stl copying build/lib/scitbx/stl/set.py -> build/bdist.linux-x86_64/wheel/./scitbx/stl copying build/lib/scitbx/stl/map.py -> build/bdist.linux-x86_64/wheel/./scitbx/stl copying build/lib/scitbx/stl/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/stl copying build/lib/scitbx/stl/tst_set.py -> build/bdist.linux-x86_64/wheel/./scitbx/stl copying build/lib/scitbx/stl/tst_vector.py -> build/bdist.linux-x86_64/wheel/./scitbx/stl creating build/bdist.linux-x86_64/wheel/scitbx/stdlib copying build/lib/scitbx/stdlib/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/stdlib copying build/lib/scitbx/minimizers.py -> build/bdist.linux-x86_64/wheel/./scitbx creating build/bdist.linux-x86_64/wheel/scitbx/suffixtree creating build/bdist.linux-x86_64/wheel/scitbx/suffixtree/test copying build/lib/scitbx/suffixtree/test/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/suffixtree/test copying build/lib/scitbx/suffixtree/test/tst_single.py -> build/bdist.linux-x86_64/wheel/./scitbx/suffixtree/test copying build/lib/scitbx/suffixtree/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/suffixtree creating build/bdist.linux-x86_64/wheel/scitbx/suffixtree/boost_python copying build/lib/scitbx/suffixtree/boost_python/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/suffixtree/boost_python copying build/lib/scitbx/suffixtree/single.py -> build/bdist.linux-x86_64/wheel/./scitbx/suffixtree creating build/bdist.linux-x86_64/wheel/scitbx/lbfgs creating build/bdist.linux-x86_64/wheel/scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/twisted_gaussian.py -> build/bdist.linux-x86_64/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/run.py -> build/bdist.linux-x86_64/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/tst_func_free_line_search.py -> build/bdist.linux-x86_64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_curvatures.py -> build/bdist.linux-x86_64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_mpi_split_evaluator.py -> build/bdist.linux-x86_64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_lbfgs_fem.py -> build/bdist.linux-x86_64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_ext.py -> build/bdist.linux-x86_64/wheel/./scitbx/lbfgs creating build/bdist.linux-x86_64/wheel/scitbx/graph copying build/lib/scitbx/graph/test_cases_tardy_pdb.py -> build/bdist.linux-x86_64/wheel/./scitbx/graph copying build/lib/scitbx/graph/rigidity_matrix_symbolic.py -> build/bdist.linux-x86_64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_utils.py -> build/bdist.linux-x86_64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_rigidity.py -> build/bdist.linux-x86_64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_tardy_tree_find_paths.py -> build/bdist.linux-x86_64/wheel/./scitbx/graph copying build/lib/scitbx/graph/rigidity.py -> build/bdist.linux-x86_64/wheel/./scitbx/graph copying build/lib/scitbx/graph/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_tardy_tree.py -> build/bdist.linux-x86_64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tardy_tree.py -> build/bdist.linux-x86_64/wheel/./scitbx/graph copying build/lib/scitbx/graph/utils.py -> build/bdist.linux-x86_64/wheel/./scitbx/graph creating build/bdist.linux-x86_64/wheel/scitbx/matrix copying build/lib/scitbx/matrix/row_echelon.py -> build/bdist.linux-x86_64/wheel/./scitbx/matrix creating build/bdist.linux-x86_64/wheel/scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/tst_householder.py -> build/bdist.linux-x86_64/wheel/./scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/tst_row_echelon.py -> build/bdist.linux-x86_64/wheel/./scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/matrix/tests copying build/lib/scitbx/matrix/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/matrix copying build/lib/scitbx/fftpack.py -> build/bdist.linux-x86_64/wheel/./scitbx creating build/bdist.linux-x86_64/wheel/scitbx/slatec copying build/lib/scitbx/slatec/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/slatec creating build/bdist.linux-x86_64/wheel/scitbx/linalg copying build/lib/scitbx/linalg/householder.py -> build/bdist.linux-x86_64/wheel/./scitbx/linalg copying build/lib/scitbx/linalg/svd.py -> build/bdist.linux-x86_64/wheel/./scitbx/linalg creating build/bdist.linux-x86_64/wheel/scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_svd.py -> build/bdist.linux-x86_64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_matrix.py -> build/bdist.linux-x86_64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_lapack_dsyev.py -> build/bdist.linux-x86_64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_cholesky.py -> build/bdist.linux-x86_64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_lapack_svd.py -> build/bdist.linux-x86_64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_eigensystem.py -> build/bdist.linux-x86_64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/eigensystem.py -> build/bdist.linux-x86_64/wheel/./scitbx/linalg copying build/lib/scitbx/linalg/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/linalg creating build/bdist.linux-x86_64/wheel/scitbx/linalg/boost_python copying build/lib/scitbx/linalg/boost_python/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/linalg/boost_python copying build/lib/scitbx/linalg/ext.py -> build/bdist.linux-x86_64/wheel/./scitbx/linalg copying build/lib/scitbx/differential_evolution.py -> build/bdist.linux-x86_64/wheel/./scitbx creating build/bdist.linux-x86_64/wheel/scitbx/wigner copying build/lib/scitbx/wigner/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/wigner copying build/lib/scitbx/wigner/tst_wigner3j.py -> build/bdist.linux-x86_64/wheel/./scitbx/wigner copying build/lib/scitbx/direct_search_simulated_annealing.py -> build/bdist.linux-x86_64/wheel/./scitbx copying build/lib/scitbx/regular_grid_on_unit_sphere.py -> build/bdist.linux-x86_64/wheel/./scitbx creating build/bdist.linux-x86_64/wheel/scitbx/dtmin copying build/lib/scitbx/dtmin/reparams.py -> build/bdist.linux-x86_64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/min_logging.py -> build/bdist.linux-x86_64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/refinebase.py -> build/bdist.linux-x86_64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/bounds.py -> build/bdist.linux-x86_64/wheel/./scitbx/dtmin creating build/bdist.linux-x86_64/wheel/scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_twisted.py -> build/bdist.linux-x86_64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_booth.py -> build/bdist.linux-x86_64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_basic.py -> build/bdist.linux-x86_64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/auxiliary.py -> build/bdist.linux-x86_64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/optional.py -> build/bdist.linux-x86_64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/minimizer.py -> build/bdist.linux-x86_64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/compulsory.py -> build/bdist.linux-x86_64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/realsymmetricpseudoinverse.py -> build/bdist.linux-x86_64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/twisted_gaussian.py -> build/bdist.linux-x86_64/wheel/./scitbx/dtmin creating build/bdist.linux-x86_64/wheel/scitbx/serialization copying build/lib/scitbx/serialization/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/serialization creating build/bdist.linux-x86_64/wheel/scitbx/iso_surface copying build/lib/scitbx/iso_surface/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/iso_surface copying build/lib/scitbx/iso_surface/tst_iso_surface.py -> build/bdist.linux-x86_64/wheel/./scitbx/iso_surface copying build/lib/scitbx/cubicle_neighbors.py -> build/bdist.linux-x86_64/wheel/./scitbx copying build/lib/scitbx/smoothing.py -> build/bdist.linux-x86_64/wheel/./scitbx creating build/bdist.linux-x86_64/wheel/scitbx/tests copying build/lib/scitbx/tests/simplex.py -> build/bdist.linux-x86_64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_r3_utils.py -> build/bdist.linux-x86_64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_basic.py -> build/bdist.linux-x86_64/wheel/./scitbx/tests copying build/lib/scitbx/tests/differential_evolution.py -> build/bdist.linux-x86_64/wheel/./scitbx/tests copying build/lib/scitbx/tests/direct_search_simulated_annealing.py -> build/bdist.linux-x86_64/wheel/./scitbx/tests copying build/lib/scitbx/tests/golden_section_search.py -> build/bdist.linux-x86_64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_minimizer_lbfgs_general.py -> build/bdist.linux-x86_64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_genetic_algorithm_with_mp.py -> build/bdist.linux-x86_64/wheel/./scitbx/tests copying build/lib/scitbx/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_cubicle_neighbors.py -> build/bdist.linux-x86_64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_smoothing.py -> build/bdist.linux-x86_64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_regular_grid_on_unit_sphere.py -> build/bdist.linux-x86_64/wheel/./scitbx/tests copying build/lib/scitbx/lbfgsb.py -> build/bdist.linux-x86_64/wheel/./scitbx creating build/bdist.linux-x86_64/wheel/scitbx/array_family creating build/bdist.linux-x86_64/wheel/scitbx/array_family/detail copying build/lib/scitbx/array_family/detail/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/array_family/detail copying build/lib/scitbx/array_family/flex.py -> build/bdist.linux-x86_64/wheel/./scitbx/array_family creating build/bdist.linux-x86_64/wheel/scitbx/array_family/accessors copying build/lib/scitbx/array_family/accessors/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/array_family/accessors copying build/lib/scitbx/array_family/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/array_family creating build/bdist.linux-x86_64/wheel/scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_numpy_bridge.py -> build/bdist.linux-x86_64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_shared.py -> build/bdist.linux-x86_64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py -> build/bdist.linux-x86_64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_flex.py -> build/bdist.linux-x86_64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/regression_test.py -> build/bdist.linux-x86_64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py -> build/bdist.linux-x86_64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_flex_argument_passing.py -> build/bdist.linux-x86_64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_smart_selection.py -> build/bdist.linux-x86_64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_numpy_scalar_conversions.py -> build/bdist.linux-x86_64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/shared.py -> build/bdist.linux-x86_64/wheel/./scitbx/array_family creating build/bdist.linux-x86_64/wheel/scitbx/math copying build/lib/scitbx/math/chebyshev_lsq_fit.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/gaussian_fit.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/distributions.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_undirected_graph.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/curve_fitting.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/incremental_SO3_sampling.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_zernike_mom.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/minimum_covering_ellipsoid.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_multivariate_moments.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/cubic_spline.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/fit_peak.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_zernike.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/clustering.py -> build/bdist.linux-x86_64/wheel/./scitbx/math creating build/bdist.linux-x86_64/wheel/scitbx/math/dev copying build/lib/scitbx/math/dev/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/dev copying build/lib/scitbx/math/des_3_100_13.py -> build/bdist.linux-x86_64/wheel/./scitbx/math creating build/bdist.linux-x86_64/wheel/scitbx/math/tests copying build/lib/scitbx/math/tests/tst_fit_peak.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_line_search.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_tetrahedron.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_resample.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_dmatrix.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_angle_derivative.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_math.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_exp_functions.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_euler_angles.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_orthonormal_basis.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_similarity_indices.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gcd.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_g_function.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_weighted_correlation.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gaussian.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_bessel.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_uniform_rotation_matrix.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_halton.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_curve_fitting.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_clustering.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_r3_rotation.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_quadrature.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_periodogram.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_cubic_equation.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_fit_quadratic_function.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_superpose.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/sphere_sphere_intersection.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_so3_lie_algebra.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/undirected_graph.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/des_3_240_21.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/zernike_align_fft.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/scale_curves.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_2d_zernike.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/so3_lie_algebra.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/sieve_of_eratosthenes.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/spe.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/breakpoint.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/euler_angles.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/fit_quadratic_function.py -> build/bdist.linux-x86_64/wheel/./scitbx/math creating build/bdist.linux-x86_64/wheel/scitbx/math/boost_python copying build/lib/scitbx/math/boost_python/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/boost_python copying build/lib/scitbx/math/superpose.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/periodogram.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/fliege_mayer_900.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/multiple_superposition.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/fliege_mayer_400.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/ext.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_bessel_zeros.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/gumbel.py -> build/bdist.linux-x86_64/wheel/./scitbx/math creating build/bdist.linux-x86_64/wheel/scitbx/math/erf copying build/lib/scitbx/math/erf/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/math/erf copying build/lib/scitbx/math/besselk.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/gaussian.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/lefebvre.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/fliege_mayer_900_ylm.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/math/farey.py -> build/bdist.linux-x86_64/wheel/./scitbx/math copying build/lib/scitbx/golden_section_search.py -> build/bdist.linux-x86_64/wheel/./scitbx creating build/bdist.linux-x86_64/wheel/scitbx/sparse creating build/bdist.linux-x86_64/wheel/scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/tst_sparse.py -> build/bdist.linux-x86_64/wheel/./scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/tst_lu_factorization.py -> build/bdist.linux-x86_64/wheel/./scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/sparse/tests copying build/lib/scitbx/sparse/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/sparse creating build/bdist.linux-x86_64/wheel/scitbx/sparse/boost_python copying build/lib/scitbx/sparse/boost_python/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/sparse/boost_python copying build/lib/scitbx/genetic_algorithm_with_mp.py -> build/bdist.linux-x86_64/wheel/./scitbx creating build/bdist.linux-x86_64/wheel/scitbx/glmtbx creating build/bdist.linux-x86_64/wheel/scitbx/glmtbx/tests copying build/lib/scitbx/glmtbx/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/glmtbx/tests copying build/lib/scitbx/glmtbx/tests/tst.py -> build/bdist.linux-x86_64/wheel/./scitbx/glmtbx/tests copying build/lib/scitbx/glmtbx/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/glmtbx creating build/bdist.linux-x86_64/wheel/scitbx/glmtbx/boost_python copying build/lib/scitbx/glmtbx/boost_python/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/glmtbx/boost_python creating build/bdist.linux-x86_64/wheel/scitbx/source_generators copying build/lib/scitbx/source_generators/lbfgs_fem.py -> build/bdist.linux-x86_64/wheel/./scitbx/source_generators creating build/bdist.linux-x86_64/wheel/scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_reductions.py -> build/bdist.linux-x86_64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_std_imports.py -> build/bdist.linux-x86_64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_algebras.py -> build/bdist.linux-x86_64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> build/bdist.linux-x86_64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_operator_functors.py -> build/bdist.linux-x86_64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/operator_functor_info.py -> build/bdist.linux-x86_64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_all.py -> build/bdist.linux-x86_64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_apply.py -> build/bdist.linux-x86_64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/flex_fwd_h.py -> build/bdist.linux-x86_64/wheel/./scitbx/source_generators copying build/lib/scitbx/source_generators/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/source_generators copying build/lib/scitbx/source_generators/utils.py -> build/bdist.linux-x86_64/wheel/./scitbx/source_generators copying build/lib/scitbx/minpack.py -> build/bdist.linux-x86_64/wheel/./scitbx creating build/bdist.linux-x86_64/wheel/scitbx/lstbx copying build/lib/scitbx/lstbx/normal_eqns_solving.py -> build/bdist.linux-x86_64/wheel/./scitbx/lstbx creating build/bdist.linux-x86_64/wheel/scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/tst_normal_equations.py -> build/bdist.linux-x86_64/wheel/./scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/test_problems.py -> build/bdist.linux-x86_64/wheel/./scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/lstbx/tests creating build/bdist.linux-x86_64/wheel/scitbx/lstbx/benchmarks copying build/lib/scitbx/lstbx/benchmarks/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/lstbx/benchmarks copying build/lib/scitbx/lstbx/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/lstbx creating build/bdist.linux-x86_64/wheel/scitbx/lstbx/boost_python copying build/lib/scitbx/lstbx/boost_python/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/lstbx/boost_python copying build/lib/scitbx/lstbx/normal_eqns.py -> build/bdist.linux-x86_64/wheel/./scitbx/lstbx creating build/bdist.linux-x86_64/wheel/scitbx/line_search copying build/lib/scitbx/line_search/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/line_search creating build/bdist.linux-x86_64/wheel/scitbx/rigid_body copying build/lib/scitbx/rigid_body/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body creating build/bdist.linux-x86_64/wheel/scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_featherstone.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/test_utils.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_joint_lib.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_free_motion.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_free_motion.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/free_motion_reference_impl.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/joint_lib.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_free_motion_hard.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_joint_lib.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_molecules.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/featherstone.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_molecules.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_spherical_refinement.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_singular.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/test_simulation.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/utils.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/tst.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body creating build/bdist.linux-x86_64/wheel/scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_basic.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_tardy.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/spatial_lib.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/joint_lib.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/featherstone.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/body_lib.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/make_bundles.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_energy_plots.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/wx_tardy.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tardy.py -> build/bdist.linux-x86_64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/cross_entropy.py -> build/bdist.linux-x86_64/wheel/./scitbx copying build/lib/scitbx/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx creating build/bdist.linux-x86_64/wheel/scitbx/misc copying build/lib/scitbx/misc/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/misc creating build/bdist.linux-x86_64/wheel/scitbx/boost_python copying build/lib/scitbx/boost_python/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/boost_python copying build/lib/scitbx/run_tests.py -> build/bdist.linux-x86_64/wheel/./scitbx creating build/bdist.linux-x86_64/wheel/scitbx/error copying build/lib/scitbx/error/tst_error.py -> build/bdist.linux-x86_64/wheel/./scitbx/error copying build/lib/scitbx/error/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/error copying build/lib/scitbx/libtbx_refresh.py -> build/bdist.linux-x86_64/wheel/./scitbx creating build/bdist.linux-x86_64/wheel/scitbx/python_utils copying build/lib/scitbx/python_utils/graph_tools.py -> build/bdist.linux-x86_64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/random_transform.py -> build/bdist.linux-x86_64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/tst_random_transform.py -> build/bdist.linux-x86_64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/tst_robust.py -> build/bdist.linux-x86_64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/dicts.py -> build/bdist.linux-x86_64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/robust_statistics.py -> build/bdist.linux-x86_64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/tst_graph.py -> build/bdist.linux-x86_64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/signal_utils.py -> build/bdist.linux-x86_64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/command_line.py -> build/bdist.linux-x86_64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/misc.py -> build/bdist.linux-x86_64/wheel/./scitbx/python_utils creating build/bdist.linux-x86_64/wheel/scitbx/random creating build/bdist.linux-x86_64/wheel/scitbx/random/tests copying build/lib/scitbx/random/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/random/tests copying build/lib/scitbx/random/tests/tst_random.py -> build/bdist.linux-x86_64/wheel/./scitbx/random/tests copying build/lib/scitbx/random/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/random creating build/bdist.linux-x86_64/wheel/scitbx/random/boost_python copying build/lib/scitbx/random/boost_python/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/random/boost_python copying build/lib/scitbx/r3_utils.py -> build/bdist.linux-x86_64/wheel/./scitbx creating build/bdist.linux-x86_64/wheel/scitbx/graphics_utils copying build/lib/scitbx/graphics_utils/__init__.py -> build/bdist.linux-x86_64/wheel/./scitbx/graphics_utils copying build/lib/scitbx/graphics_utils/tst.py -> build/bdist.linux-x86_64/wheel/./scitbx/graphics_utils copying build/lib/scitbx/restraints.py -> build/bdist.linux-x86_64/wheel/./scitbx creating build/bdist.linux-x86_64/wheel/cctbx creating build/bdist.linux-x86_64/wheel/cctbx/command_line copying build/lib/cctbx/command_line/form_factor_query.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/cctbx_test_nightly.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/cod_select_and_pickle.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/samosa_join.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/samosa_scale.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/euclidean_model_matching.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/eltbx.show_fp_fdp.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/diffuse.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/brehm_diederichs.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/precession_view.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/space_group_info.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/qscore.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/segment_and_split_map.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/auto_sharpen.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/subgroups.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/find_reticular_twin_laws.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/structure_factor_timings.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/wavelength_units.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/version.py -> build/bdist.linux-x86_64/wheel/./cctbx/command_line creating build/bdist.linux-x86_64/wheel/cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/energies.py -> build/bdist.linux-x86_64/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/flags.py -> build/bdist.linux-x86_64/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/tst_ext.py -> build/bdist.linux-x86_64/wheel/./cctbx/adp_restraints creating build/bdist.linux-x86_64/wheel/cctbx/examples copying build/lib/cctbx/examples/site_symmetry_table.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_4.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/phase_o_phrenia.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/unit_cell_minimizers.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples creating build/bdist.linux-x86_64/wheel/cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/site_derivatives.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/sites_derivatives.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/lebedev_2005_perturbation.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/miller_transform.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_2.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/hirshfeld_test.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/g_exp_i_partial_derivatives.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives_4.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives_2.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/symops_530.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/exp_i_alpha_derivatives.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/analyze_adp.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/space_group_matrices.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/list_non_principal_continuous_shifts.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives_3.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/le_page_1982_vs_lebedev_2005.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/sub_group_graph.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/getting_started.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/cr2o3_consistency_checks.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/convert_ccp4_symop_lib.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/fft_map_electron_density_around_atom.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/find_distances_using_cpp_objects.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/space_subgroups.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/reduced_cell_two_folds.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/location_part.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/random_puckers.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_exp_i_alpha_derivatives.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/find_sys_abs_equiv_space_groups.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/g_exp_i_alpha_derivatives.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/unit_cell_refinement.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/neutron_structure_factors.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/trigonal_r_vs_tetragonal_i.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_space_subgroups.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples creating build/bdist.linux-x86_64/wheel/cctbx/examples/merging copying build/lib/cctbx/examples/merging/data_utilities.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/show_results.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/merging creating build/bdist.linux-x86_64/wheel/cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/scale.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/join.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/sigma_correction.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/test_cc_half.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/data_subset.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/tst_permutations.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/test_levenberg_sparse.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/task4.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/test1.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/maximum_subgroups.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/miller_common_sets.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/f_model_example.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/adp_symmetry_constraints.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/map_skewness.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/change_hand_p31.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/quartz_structure.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/site_symmetry_constraints.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/cr2o3_primitive_cell.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_3.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/steve_collins.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/all_axes.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/ccp4_map.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_phase_o_phrenia.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/random_f_calc.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/examples/view_fft_map.py -> build/bdist.linux-x86_64/wheel/./cctbx/examples copying build/lib/cctbx/run_examples.py -> build/bdist.linux-x86_64/wheel/./cctbx creating build/bdist.linux-x86_64/wheel/cctbx/development copying build/lib/cctbx/development/github.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/fmt_utils.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/create_models_or_maps.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/cns_density_modification.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/direct_or_fft.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/space_group_option_parser.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/electron_density_sampling.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/run_shelx.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/approx_amplitude_vs_resolution.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/random_structure.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/tst_cns_epsilon.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/tst_cns_hl.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/make_cns_input.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/make_settings.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/structure_factor_utils.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/run_shelx76.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/development/debug_utils.py -> build/bdist.linux-x86_64/wheel/./cctbx/development copying build/lib/cctbx/anharmonic.py -> build/bdist.linux-x86_64/wheel/./cctbx copying build/lib/cctbx/french_wilson.py -> build/bdist.linux-x86_64/wheel/./cctbx creating build/bdist.linux-x86_64/wheel/cctbx/masks copying build/lib/cctbx/masks/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/masks copying build/lib/cctbx/math_module.py -> build/bdist.linux-x86_64/wheel/./cctbx copying build/lib/cctbx/multipolar.py -> build/bdist.linux-x86_64/wheel/./cctbx copying build/lib/cctbx/euclidean_model_matching.py -> build/bdist.linux-x86_64/wheel/./cctbx creating build/bdist.linux-x86_64/wheel/cctbx/geometry copying build/lib/cctbx/geometry/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry creating build/bdist.linux-x86_64/wheel/cctbx/array_family copying build/lib/cctbx/array_family/flex.py -> build/bdist.linux-x86_64/wheel/./cctbx/array_family copying build/lib/cctbx/array_family/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/array_family creating build/bdist.linux-x86_64/wheel/cctbx/covariance copying build/lib/cctbx/covariance/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/covariance creating build/bdist.linux-x86_64/wheel/cctbx/crystal copying build/lib/cctbx/crystal/find_best_cell.py -> build/bdist.linux-x86_64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/super_cell.py -> build/bdist.linux-x86_64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/tst_distance_based_connectivity.py -> build/bdist.linux-x86_64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/tst_super_cell.py -> build/bdist.linux-x86_64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/direct_space_asu.py -> build/bdist.linux-x86_64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/reindex.py -> build/bdist.linux-x86_64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/coordination_sequences.py -> build/bdist.linux-x86_64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/burzlaff_zimmermann_dewolff.py -> build/bdist.linux-x86_64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/distance_based_connectivity.py -> build/bdist.linux-x86_64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/close_packing.py -> build/bdist.linux-x86_64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/tst_ext.py -> build/bdist.linux-x86_64/wheel/./cctbx/crystal creating build/bdist.linux-x86_64/wheel/cctbx/source_generators copying build/lib/cctbx/source_generators/flex_fwd_h.py -> build/bdist.linux-x86_64/wheel/./cctbx/source_generators copying build/lib/cctbx/source_generators/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/source_generators creating build/bdist.linux-x86_64/wheel/cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/generate_henke_cpp.py -> build/bdist.linux-x86_64/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> build/bdist.linux-x86_64/wheel/./cctbx/source_generators/eltbx creating build/bdist.linux-x86_64/wheel/cctbx/regression copying build/lib/cctbx/regression/tst_mem_2.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_box.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_refine_xray_curvs.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_special_op_simplifier.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_reflection_statistics.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_french_wilson.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_statistics.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_triplet_generator.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_show_cosets.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fast_nv1995.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_minimization.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_lattice_symmetry.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_subgroups.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_structure_factors.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_loc_res.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_weighting_schemes.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sampled_model_density.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_wavelength_units.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_r_free_utils.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_merge_equivalents.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_create_models_or_maps.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_coordination_sequences.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_change_basis.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_amplitude_normalisation.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_mem.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_twin_target.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints_2.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal_asu_clusters.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_data_manipulation.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_modifications.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grouped_data.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_f_model.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_aniso_restraints.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_krivy_gruber.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_wilson_plot.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_fast_gradients.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_pair_asu_table.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_minimization_failure.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_diffuse.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_statistics_graphs.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal_close_packing.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints_lbfgs.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_map_weights_for_symmetry_summation.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_constraints.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_direct_scaling.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_constraints_cartesian.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fourier_transform_real_part_at_x.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_map_is_periodic.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_reciprocal_space_asu.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_pointgroup_tools.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sphericity.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_pickling.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_derivatives.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_modifications_rm.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_fft_map.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_find_best_cell.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sf_low_res_accuracy.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_harker.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_double_step_filtration.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_connectivity.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_mask.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_emma.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_site_constraints.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_expand_to_p1.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_niggli_reduction_cpp.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_tidy_pickling.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_web_change_basis.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fcalc_fft_stability.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_prepare_map_for_docking.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_connectivity_allsym.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_denominators.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_lookup_utils.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_direct_space_asu.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_math_module.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_match_bijvoet_mates.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_target_functors.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray.py -> build/bdist.linux-x86_64/wheel/./cctbx/regression creating build/bdist.linux-x86_64/wheel/cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/base_geometry.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/process_nonbonded_proxies.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/energies.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_motif.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/manager.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/standard_cif_links.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/lbfgs.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/linking_class.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/flags.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_angle_derivs.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/auto_linking_types.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_proxy_registry.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_ext.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/distance_least_squares.py -> build/bdist.linux-x86_64/wheel/./cctbx/geometry_restraints creating build/bdist.linux-x86_64/wheel/cctbx/omz copying build/lib/cctbx/omz/cod_refine.py -> build/bdist.linux-x86_64/wheel/./cctbx/omz copying build/lib/cctbx/omz/cod_select_and_pickle.py -> build/bdist.linux-x86_64/wheel/./cctbx/omz copying build/lib/cctbx/omz/eval_iso_vs_refined.py -> build/bdist.linux-x86_64/wheel/./cctbx/omz copying build/lib/cctbx/omz/pdb_dev.py -> build/bdist.linux-x86_64/wheel/./cctbx/omz copying build/lib/cctbx/omz/tst_dev.py -> build/bdist.linux-x86_64/wheel/./cctbx/omz copying build/lib/cctbx/omz/bfgs.py -> build/bdist.linux-x86_64/wheel/./cctbx/omz copying build/lib/cctbx/omz/cif_refine.py -> build/bdist.linux-x86_64/wheel/./cctbx/omz copying build/lib/cctbx/omz/dev.py -> build/bdist.linux-x86_64/wheel/./cctbx/omz copying build/lib/cctbx/omz/tst_bfgs.py -> build/bdist.linux-x86_64/wheel/./cctbx/omz copying build/lib/cctbx/omz/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/omz copying build/lib/cctbx/omz/tardy_adaptor.py -> build/bdist.linux-x86_64/wheel/./cctbx/omz copying build/lib/cctbx/crystal_orientation.py -> build/bdist.linux-x86_64/wheel/./cctbx copying build/lib/cctbx/dmtbx.py -> build/bdist.linux-x86_64/wheel/./cctbx creating build/bdist.linux-x86_64/wheel/cctbx/neutron copying build/lib/cctbx/neutron/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/neutron creating build/bdist.linux-x86_64/wheel/cctbx/merging copying build/lib/cctbx/merging/brehm_diederichs.py -> build/bdist.linux-x86_64/wheel/./cctbx/merging copying build/lib/cctbx/merging/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/merging creating build/bdist.linux-x86_64/wheel/cctbx/uctbx copying build/lib/cctbx/uctbx/reduction_base.py -> build/bdist.linux-x86_64/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/gruber_1973.py -> build/bdist.linux-x86_64/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/gruber_1973_table_1.py -> build/bdist.linux-x86_64/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/uctbx creating build/bdist.linux-x86_64/wheel/cctbx/uctbx/determine_unit_cell copying build/lib/cctbx/uctbx/determine_unit_cell/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/uctbx/determine_unit_cell copying build/lib/cctbx/uctbx/krivy_gruber_1976.py -> build/bdist.linux-x86_64/wheel/./cctbx/uctbx creating build/bdist.linux-x86_64/wheel/cctbx/miller copying build/lib/cctbx/miller/tst_map_to_asu_isym.py -> build/bdist.linux-x86_64/wheel/./cctbx/miller copying build/lib/cctbx/miller/reindexing.py -> build/bdist.linux-x86_64/wheel/./cctbx/miller copying build/lib/cctbx/miller/display.py -> build/bdist.linux-x86_64/wheel/./cctbx/miller copying build/lib/cctbx/miller/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/miller copying build/lib/cctbx/miller/tst_reindexing.py -> build/bdist.linux-x86_64/wheel/./cctbx/miller creating build/bdist.linux-x86_64/wheel/cctbx/macro_mol copying build/lib/cctbx/macro_mol/rotation_parameters.py -> build/bdist.linux-x86_64/wheel/./cctbx/macro_mol copying build/lib/cctbx/macro_mol/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/macro_mol copying build/lib/cctbx/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx creating build/bdist.linux-x86_64/wheel/cctbx/maptbx copying build/lib/cctbx/maptbx/resolution_from_map_and_model.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_mask.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_atom_curves.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_loft.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/prepare_map_for_docking.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/mask.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_target_and_gradients.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_peak_volume_estimate.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_map_peak_3d_as_2d.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/minimization.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/map_symmetry.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_real_space_refinement_simple.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_interpolation_2.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/mem.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/prepare_map_for_refinement.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/refine_sharpening.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_resolution_from_map_and_model.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/qscore.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/servalcat_difference_map.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_asymmetric_map.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/segment_and_split_map.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_ccp.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/box.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/auto_sharpen.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_MapPeakLocator.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_bcr.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/fsc_curve.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/refine_scales_errors.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/real_space_refinement_simple.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx creating build/bdist.linux-x86_64/wheel/cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/bcr.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_qmap_02.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_example.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_vrm2.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/compute_tables.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/qmap.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_two_atoms.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_vrm.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_table.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_adp_refine.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/tst_interpolation.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_qscore.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_get_percentile_cutoffs.py -> build/bdist.linux-x86_64/wheel/./cctbx/maptbx copying build/lib/cctbx/run_tests.py -> build/bdist.linux-x86_64/wheel/./cctbx creating build/bdist.linux-x86_64/wheel/cctbx/web copying build/lib/cctbx/web/phase_o_phrenia.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/change_hand.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/replay.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/cgi_utils.py -> build/bdist.linux-x86_64/wheel/./cctbx/web creating build/bdist.linux-x86_64/wheel/cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jv_index.py -> build/bdist.linux-x86_64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jv_asu.py -> build/bdist.linux-x86_64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jvx.py -> build/bdist.linux-x86_64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/guide_to_notation.py -> build/bdist.linux-x86_64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/web_links.py -> build/bdist.linux-x86_64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/iotbx_cif_validate.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/structure_factors_pdb.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/frac_cart.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/explore_symmetry.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/lattice_symmetry.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/structure_factors.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/shelx.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/browse_settings.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/multiple_cell.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/change_setting.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/libtbx_help.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/change_basis.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/dispatcher.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/all_axes.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/emma.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/wyckoff.py -> build/bdist.linux-x86_64/wheel/./cctbx/web copying build/lib/cctbx/web/io_utils.py -> build/bdist.linux-x86_64/wheel/./cctbx/web creating build/bdist.linux-x86_64/wheel/cctbx/sgtbx copying build/lib/cctbx/sgtbx/plane_groups.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/harker.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/show_cosets.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/lattice_symmetry.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/symbol_confidence.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/reticular_twin_laws.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/sub_lattice_tools.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/sys_abs_equiv.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/bravais_types.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/literal_description.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/subgroups.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/rational_matrices_point_groups.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx creating build/bdist.linux-x86_64/wheel/cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/cut_plane.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/check_redundancies.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/facet_analysis.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/short_cuts.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx/direct_space_asu creating build/bdist.linux-x86_64/wheel/cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/reference_table.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/reticular_pg_tools.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/pointgroup_tools.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/cosets.py -> build/bdist.linux-x86_64/wheel/./cctbx/sgtbx copying build/lib/cctbx/libtbx_refresh.py -> build/bdist.linux-x86_64/wheel/./cctbx creating build/bdist.linux-x86_64/wheel/cctbx/xray creating build/bdist.linux-x86_64/wheel/cctbx/xray/observations copying build/lib/cctbx/xray/observations/tst_observations.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/observations copying build/lib/cctbx/xray/observations/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/observations copying build/lib/cctbx/xray/minimization.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray copying build/lib/cctbx/xray/weighting_schemes.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray copying build/lib/cctbx/xray/target_functors.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray copying build/lib/cctbx/xray/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray copying build/lib/cctbx/xray/observation_types.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray copying build/lib/cctbx/xray/structure.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray creating build/bdist.linux-x86_64/wheel/cctbx/xray/targets copying build/lib/cctbx/xray/targets/tst_shelxl_wght_ls.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/tst_r1.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/r1.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/ext.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray copying build/lib/cctbx/xray/scatterer.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray creating build/bdist.linux-x86_64/wheel/cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/algorithm.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/manager.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_base.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_fft.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_direct.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_fft.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/global_counters.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_direct.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/misc.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradient_flags.py -> build/bdist.linux-x86_64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/adptbx.py -> build/bdist.linux-x86_64/wheel/./cctbx copying build/lib/cctbx/translation_search.py -> build/bdist.linux-x86_64/wheel/./cctbx copying build/lib/cctbx/r_free_utils.py -> build/bdist.linux-x86_64/wheel/./cctbx copying build/lib/cctbx/statistics.py -> build/bdist.linux-x86_64/wheel/./cctbx copying build/lib/cctbx/symmetry_search.py -> build/bdist.linux-x86_64/wheel/./cctbx creating build/bdist.linux-x86_64/wheel/cctbx/eltbx copying build/lib/cctbx/eltbx/gaussian_fit.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/neutron.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx creating build/bdist.linux-x86_64/wheel/cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/rez_rez_grant.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/kissel_io.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/kissel_fits.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_fits.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/combine_fits.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/format_gaussian_fits.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_section61_io.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_approx.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/e_scattering_plots.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_kissel.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_cross_validation.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/hydrogen_plots.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/covalent_radii.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/formula.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/icsd_radii.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx creating build/bdist.linux-x86_64/wheel/cctbx/eltbx/xray_scattering copying build/lib/cctbx/eltbx/xray_scattering/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx/xray_scattering copying build/lib/cctbx/eltbx/wavelengths.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/chemical_elements.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/attenuation_coefficient.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/fp_fdp.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/henke.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/tiny_pse.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/e_scattering.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/sasaki.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/distance_based_connectivity.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/van_der_waals_radii.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/read_custom_scattering_dict.py -> build/bdist.linux-x86_64/wheel/./cctbx/eltbx creating build/bdist.linux-x86_64/wheel/cootbx copying build/lib/cootbx/hydrogens_button.py -> build/bdist.linux-x86_64/wheel/./cootbx copying build/lib/cootbx/watch_file.py -> build/bdist.linux-x86_64/wheel/./cootbx copying build/lib/cootbx/simple_zoom_list.py -> build/bdist.linux-x86_64/wheel/./cootbx copying build/lib/cootbx/interactive_edit.py -> build/bdist.linux-x86_64/wheel/./cootbx copying build/lib/cootbx/xmlrpc_server.py -> build/bdist.linux-x86_64/wheel/./cootbx copying build/lib/cootbx/validation_lists.py -> build/bdist.linux-x86_64/wheel/./cootbx copying build/lib/cootbx/__init__.py -> build/bdist.linux-x86_64/wheel/./cootbx copying build/lib/cootbx/ligand_checklist.py -> build/bdist.linux-x86_64/wheel/./cootbx copying build/lib/cootbx/view_refinement.py -> build/bdist.linux-x86_64/wheel/./cootbx creating build/bdist.linux-x86_64/wheel/ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/copy_files.py -> build/bdist.linux-x86_64/wheel/./ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/__init__.py -> build/bdist.linux-x86_64/wheel/./ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/tst.py -> build/bdist.linux-x86_64/wheel/./ccp4io_adaptbx creating build/bdist.linux-x86_64/wheel/libtbx copying build/lib/libtbx/configure.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/cluster.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/find_reference_cycles.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/dlite.py -> build/bdist.linux-x86_64/wheel/./libtbx creating build/bdist.linux-x86_64/wheel/libtbx/command_line copying build/lib/libtbx/command_line/find_untested.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_full_command_path.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/printenv.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_dist_paths.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_reserved_names.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_but_no_repr.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_in_repositories.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_installer.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/clean_clutter.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_install_script_bat.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_env.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/run_tests_parallel.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/phil.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/resource_monitor_plot.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin_ends_with.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/bootstrap.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sge_available_slots.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/dtrace.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/wait_for_file.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remove_unused_imports.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_module_dependencies.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/check_libcpp.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/seconds_since_the_epoch.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_host_and_user.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_modules.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/line_count.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/easy_qsub.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_line_count.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_lib_path.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_source_files_sorted_by_size.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin_contains_strings.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/add_docstrings_with_ai.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/reindent.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/any2unix.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_date_and_time.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/clear_paths.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_clutter.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/bundle_as_exe.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_not_show_diff.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/start_binary_bundle.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_under_build.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/start_process.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_mac_app.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/import_all_python.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_number_of_processors.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remote_processing.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_repository_paths.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_numeric_version.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/help.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_include_paths.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_build_path.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/parallel_simple.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/ipython_shell_start.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_unused_imports.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_windows_exe.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/env_run.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_python_dependencies.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/nequal.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_commands.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_build_options.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_all_on_path.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/analyse_code_comments.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_pdb_mmcif_problems.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/install.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_pythonpath.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_old_style_classes.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sphinx_build.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_python_sys_executable.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/epydoc_run.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_numpy_version.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_unused_imports_crude.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/run_pickled_function.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/scons.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_tests.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_bin_path.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/raise_exception_for_testing.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remove_tree.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/py_compile_all.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_variable_names.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_files.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_cctbx_bundle_for_installer.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_environ_usage.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_unzipsfx.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/make_sphinx_html.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/git_avoid_merges.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/cctbx_chunk.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_selfx.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/make_dist.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/extract_code_from_txt.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/install_conda.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/prime_factors_of.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_files.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/path_utility.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/import_all_ext.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sge_qstat_counts.py -> build/bdist.linux-x86_64/wheel/./libtbx/command_line creating build/bdist.linux-x86_64/wheel/libtbx/development copying build/lib/libtbx/development/timers.py -> build/bdist.linux-x86_64/wheel/./libtbx/development copying build/lib/libtbx/development/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/development copying build/lib/libtbx/development/xcode_build_phase.py -> build/bdist.linux-x86_64/wheel/./libtbx/development copying build/lib/libtbx/development/except_Exception.py -> build/bdist.linux-x86_64/wheel/./libtbx/development copying build/lib/libtbx/tst_version.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_containers.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/citations.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/resource_monitor.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_binary_search.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/smart_open.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/thread_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/easy_run.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/word_index_generator.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/xmlrpc_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/clusterTests.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/code_analysis.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/path.py -> build/bdist.linux-x86_64/wheel/./libtbx creating build/bdist.linux-x86_64/wheel/libtbx/langchain creating build/bdist.linux-x86_64/wheel/libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/phenix_programs.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/yaml_loader.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/summary_display.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/thinking_prompts.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/prompts_hybrid.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/html_report_template.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/plan_schema.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/plan_template_loader.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/metric_patterns.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/kb_loader.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/api_schema.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/prompts.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/explanation_prompts.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/program_registration.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/knowledge creating build/bdist.linux-x86_64/wheel/libtbx/langchain/commands copying build/lib/libtbx/langchain/commands/base.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/commands copying build/lib/libtbx/langchain/commands/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/commands creating build/bdist.linux-x86_64/wheel/libtbx/langchain/examples copying build/lib/libtbx/langchain/examples/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/examples copying build/lib/libtbx/langchain/phenix_knowledge.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain copying build/lib/libtbx/langchain/run_inspect_db.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain creating build/bdist.linux-x86_64/wheel/libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/perceive_checks.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph_state.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/thinking_agent.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/placement_checker.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/sanity_checker.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/command_postprocessor.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/strategy_memory.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/program_registry.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/session_tools.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/command_builder.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/event_log.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/program_validator.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/advice_preprocessor.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/rules_selector.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/metrics_analyzer.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/directive_validator.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/format_validation.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/api_client.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/gate_evaluator.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/metric_evaluator.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/generate_logic_doc.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/tst_agent_enhancements.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/error_analyzer.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/display_data_model.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/generate_safety_docs.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/file_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/event_formatter.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/planner.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/raw_advice_scanner.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/session.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/error_classifier.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph_nodes.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/plan_generator.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/transport.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/r_factors.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/dry_run_manager.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/template_builder.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/docs_tools.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/structure_model.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/intent_classifier.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/validation_inspector.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/validation_history.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/directive_extractor.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/config_loader.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/yaml_tools.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/file_metadata.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/kb_tags.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/memory.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/rate_limit_handler.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/workflow_engine.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/failure_diagnoser.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/hypothesis_evaluator.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/phil_validator.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/log_section_extractor.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/phenix_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/mtz_inspector.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/pattern_manager.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/contract.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/nl_to_phil.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/best_files_tracker.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/utils.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/workflow_state.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/agent creating build/bdist.linux-x86_64/wheel/libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/run_measurements.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/validate.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/run_controls.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/log_structure_extractor.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/corpus_paths.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/log_extraction creating build/bdist.linux-x86_64/wheel/libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_api_schema.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/audit_phase_rename.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phil_namespace_cleaner.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_reason_prompt.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_safe_float_consolidation.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_report_verifier.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_workflow_state.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_skip_promotion.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_silent_stop_abort_messages.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_new_programs.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_reactive_deviation_hold.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_default_models.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_solve_action_keywords.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_settings_list_coercion.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_advice_preprocessing.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_sequence_only_routing.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_action_item_1.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_validator_typo_hints.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_protocol_version.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_preprocessor_file_override.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase8_command_building.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_log_structure_extractor.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_workflow_complete_stop.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_hardcoded_cleanup.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_langchain_tools.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests creating build/bdist.linux-x86_64/wheel/libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/canary_check.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_directive_extraction.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_framework_self.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_c1_raw_authority.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_planning.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/framework.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/run_llm_tests.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/tst_structure_model.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_spurious_stop_after_requested.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_best_files_tracker.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor_grounding.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_ligandfit_patterns.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_analysis_request.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_extended_stop_phrasings.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_thinking_defense.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_fix_verification.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_llm_unavailable_notice.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase2b_activation.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_yaml_config.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_backward_compat.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_program_registration.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_dock_and_stop.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_generate_guard.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_categorizer.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_audit_fixes.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_step1f_single_emit.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_extraction_failure_visibility.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_history_analysis.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_sanity_checker.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_classify_mtz_type_001.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_generator.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_planning_framework.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_force_no_ai_server.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_h17_strip_executor.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_canary.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_validator.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/canary_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_standalone_consistency.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_agent_build_info.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validate_file_overrides.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3_bug5.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_yaml_tools.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_validation.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_autobuild_hl_recovery.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_command_builder.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_refine_final_rfree.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_program_identity.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_pattern_manager.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_resolution_stop.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_categorization.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_ligand_workflow_restart.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_directives.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_schema.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_initialize_plan_smoke.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_reasoning_command_divergence.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_v120_providers.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_mode_isolation.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_v112_13_fixes.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_portkey_embedding_model.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_mtz_phases_session_blocking.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validate_step_after_program_guard.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase4_history_flags.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_space_group_validation.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_provider_error_classification.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_obs_labels_auto_fill.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validation_history.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_provider_lock.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/test_api_keys.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_summary_file.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_transport_surfaces.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_optional_dep_resilience.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase1_contract_gaps.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_contract_compliance.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_event_system.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_diagnosed_failure_stop.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3_serialization_symmetry.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_copies_tracking.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_diagnostic_messages.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_dry_run.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_decision_flow.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_log_extractor.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/run_all_tests.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_supported_providers_single_source.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_lock_reconciliation.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_n_bugs.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_state_serialization.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_event_formatter_file_categories.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_error_classifier.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_old_client_compat.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_skip_to_program.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_encoding.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_autobuild_sequence_waiver.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_summary.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_resume_reopen_stages.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directives_integration.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_metric_patterns.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_predict_and_build_no_ncs.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_program_requirements.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_integration.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_flags_missing.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase2_path_consistency.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_error_analyzer.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rebuild_template_selection.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_explanation_prompts.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_cryoem_stop_validation.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_placement_skip_rebuild.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_intent_classifier.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase7_routing_simulation.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_strategy_memory.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_template.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_summary_display.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_shared_code_imports.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_user_advice_filter.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_data_input_filter.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_transport.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_docs_tools.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_cc_key_extraction.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests creating build/bdist.linux-x86_64/wheel/libtbx/langchain/tests/integration copying build/lib/libtbx/langchain/tests/integration/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests/integration copying build/lib/libtbx/langchain/tests/tst_autosol_bugs.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase6_category_consumer.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phaser_multimodel.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase0_static_audit.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_gate_evaluator.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_hypothesis_evaluator.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_raw_advice_scanner.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_abort_message_all_stops.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_dependencies.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_display_data_model.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_tools.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_reason_codes.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phil_validation.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_perceive_stop_checks.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_layer_diagnostics.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_condition_false_positive.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_grounding_stop_after_requested.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/analyze_tutorial_runs.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_scenario_tracer.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_mtz_crosscheck.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_lead_program_offer.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_general_resolver.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_condition_fix.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_after_program_fill_from_raw.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_extract_raw_advice.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase9_llm_perturbation.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_thinking_agent.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_fabricated_stop_condition.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_density_modify_experiment_type.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_simple_extractor_validation.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_metrics_analyzer.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_after_program_prompt.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase5_error_classification.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/tests creating build/bdist.linux-x86_64/wheel/libtbx/langchain/strategies copying build/lib/libtbx/langchain/strategies/base.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/strategies copying build/lib/libtbx/langchain/strategies/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/strategies creating build/bdist.linux-x86_64/wheel/libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/_chroma_resilience.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/vector_store.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/retriever.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/document_loader.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/run_query_docs.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain copying build/lib/libtbx/langchain/run_build_db.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain creating build/bdist.linux-x86_64/wheel/libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/report_verifier.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/analyzer.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/state_extractor.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/log_info.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/agent_session_analyzer.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/analysis_request.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/summarizer.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/program_identity.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/orientation_strip.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain creating build/bdist.linux-x86_64/wheel/libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/run_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/text_processing.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/query.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/utils creating build/bdist.linux-x86_64/wheel/libtbx/langchain/core copying build/lib/libtbx/langchain/core/types.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/_version.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/llm.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/_build_info.py -> build/bdist.linux-x86_64/wheel/./libtbx/langchain/core copying build/lib/libtbx/console_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/cli.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/file_clutter.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/math_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/forward_compatibility.py -> build/bdist.linux-x86_64/wheel/./libtbx creating build/bdist.linux-x86_64/wheel/libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/remote.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/lsf.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/communication.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils creating build/bdist.linux-x86_64/wheel/libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/polling.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/submission.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/util.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/transfer.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/status.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/errors.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/looping.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/scheduling.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/pbs_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/scheduling_helpers.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/tst.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/generic.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/sge_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/tst_run_tests_parallel_unique_dirs.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/assert_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/progress.py -> build/bdist.linux-x86_64/wheel/./libtbx creating build/bdist.linux-x86_64/wheel/libtbx/jobs copying build/lib/libtbx/jobs/tst_manager.py -> build/bdist.linux-x86_64/wheel/./libtbx/jobs copying build/lib/libtbx/jobs/fake_slurm.py -> build/bdist.linux-x86_64/wheel/./libtbx/jobs copying build/lib/libtbx/jobs/manager.py -> build/bdist.linux-x86_64/wheel/./libtbx/jobs copying build/lib/libtbx/jobs/tst_batch.py -> build/bdist.linux-x86_64/wheel/./libtbx/jobs copying build/lib/libtbx/jobs/tst_local.py -> build/bdist.linux-x86_64/wheel/./libtbx/jobs creating build/bdist.linux-x86_64/wheel/libtbx/jobs/backends copying build/lib/libtbx/jobs/backends/slurm.py -> build/bdist.linux-x86_64/wheel/./libtbx/jobs/backends copying build/lib/libtbx/jobs/backends/local.py -> build/bdist.linux-x86_64/wheel/./libtbx/jobs/backends copying build/lib/libtbx/jobs/backends/batch.py -> build/bdist.linux-x86_64/wheel/./libtbx/jobs/backends copying build/lib/libtbx/jobs/backends/base.py -> build/bdist.linux-x86_64/wheel/./libtbx/jobs/backends copying build/lib/libtbx/jobs/backends/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/jobs/backends copying build/lib/libtbx/jobs/tst_slurm.py -> build/bdist.linux-x86_64/wheel/./libtbx/jobs copying build/lib/libtbx/jobs/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/jobs copying build/lib/libtbx/tst_str_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx creating build/bdist.linux-x86_64/wheel/libtbx/sphinx copying build/lib/libtbx/sphinx/phil.py -> build/bdist.linux-x86_64/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/pubmed.py -> build/bdist.linux-x86_64/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/python_string.py -> build/bdist.linux-x86_64/wheel/./libtbx/sphinx copying build/lib/libtbx/tst_mahalanobis.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/complex_math.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_xmlrpc_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/easy_profile.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_thread_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_citations.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/table_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/clear_paths.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/simplexml.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_program_template.py -> build/bdist.linux-x86_64/wheel/./libtbx creating build/bdist.linux-x86_64/wheel/libtbx/scheduling copying build/lib/libtbx/scheduling/job_scheduler.py -> build/bdist.linux-x86_64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/mp_handler.py -> build/bdist.linux-x86_64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/socket_queue.py -> build/bdist.linux-x86_64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/cluster_handler.py -> build/bdist.linux-x86_64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/parallel_for.py -> build/bdist.linux-x86_64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/stacktrace.py -> build/bdist.linux-x86_64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/mainthread.py -> build/bdist.linux-x86_64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/thread_handler.py -> build/bdist.linux-x86_64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/shared_resource.py -> build/bdist.linux-x86_64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/file_queue.py -> build/bdist.linux-x86_64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/philgen.py -> build/bdist.linux-x86_64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/result.py -> build/bdist.linux-x86_64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/process_pool.py -> build/bdist.linux-x86_64/wheel/./libtbx/scheduling copying build/lib/libtbx/tst_scheduling.py -> build/bdist.linux-x86_64/wheel/./libtbx creating build/bdist.linux-x86_64/wheel/libtbx/phil copying build/lib/libtbx/phil/interface.py -> build/bdist.linux-x86_64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_tokenizer.py -> build/bdist.linux-x86_64/wheel/./libtbx/phil copying build/lib/libtbx/phil/gui_objects.py -> build/bdist.linux-x86_64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_interface.py -> build/bdist.linux-x86_64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_experimental.py -> build/bdist.linux-x86_64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tokenizer.py -> build/bdist.linux-x86_64/wheel/./libtbx/phil copying build/lib/libtbx/phil/parser.py -> build/bdist.linux-x86_64/wheel/./libtbx/phil copying build/lib/libtbx/phil/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/phil copying build/lib/libtbx/phil/experimental.py -> build/bdist.linux-x86_64/wheel/./libtbx/phil copying build/lib/libtbx/phil/command_line.py -> build/bdist.linux-x86_64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst.py -> build/bdist.linux-x86_64/wheel/./libtbx/phil copying build/lib/libtbx/objgraph.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/object_oriented_patterns.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_guided_coding.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/cpp_function_name.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_t96_roster.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_fully_buffered_timeout.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/log.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/pkg_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_representation.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/crossmingw.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_easy_pickle.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_easy_mp_state.py -> build/bdist.linux-x86_64/wheel/./libtbx creating build/bdist.linux-x86_64/wheel/libtbx/bundle copying build/lib/libtbx/bundle/copy_build_libtbx.py -> build/bdist.linux-x86_64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/install_csh.py -> build/bdist.linux-x86_64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/copy_all.py -> build/bdist.linux-x86_64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/copy_runtime_sources.py -> build/bdist.linux-x86_64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/install_bat.py -> build/bdist.linux-x86_64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/utils.py -> build/bdist.linux-x86_64/wheel/./libtbx/bundle copying build/lib/libtbx/tst_python_code_parsing.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/str_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx creating build/bdist.linux-x86_64/wheel/libtbx/test_utils copying build/lib/libtbx/test_utils/t96_roster.py -> build/bdist.linux-x86_64/wheel/./libtbx/test_utils copying build/lib/libtbx/test_utils/parallel.py -> build/bdist.linux-x86_64/wheel/./libtbx/test_utils copying build/lib/libtbx/test_utils/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/test_utils copying build/lib/libtbx/binary_search.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_topological_sort.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/option_parser.py -> build/bdist.linux-x86_64/wheel/./libtbx creating build/bdist.linux-x86_64/wheel/libtbx/program_utils copying build/lib/libtbx/program_utils/statistics_info.py -> build/bdist.linux-x86_64/wheel/./libtbx/program_utils copying build/lib/libtbx/program_utils/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/program_utils copying build/lib/libtbx/program_utils/result.py -> build/bdist.linux-x86_64/wheel/./libtbx/program_utils copying build/lib/libtbx/try_hello_world_c.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/pyframe.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/wingide.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_find_unused_imports.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx creating build/bdist.linux-x86_64/wheel/libtbx/server copying build/lib/libtbx/server/StartServer.py -> build/bdist.linux-x86_64/wheel/./libtbx/server copying build/lib/libtbx/server/FileSocket.py -> build/bdist.linux-x86_64/wheel/./libtbx/server copying build/lib/libtbx/server/FileServer.py -> build/bdist.linux-x86_64/wheel/./libtbx/server copying build/lib/libtbx/server/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/server copying build/lib/libtbx/server/FileClient.py -> build/bdist.linux-x86_64/wheel/./libtbx/server copying build/lib/libtbx/server/SocketServer.py -> build/bdist.linux-x86_64/wheel/./libtbx/server copying build/lib/libtbx/tst_add_docstrings_with_ai.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/env_config.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_easy_mp_multicore.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_dlite.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/start_print_trace.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/run_tests.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/easy_pickle.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/introspection.py -> build/bdist.linux-x86_64/wheel/./libtbx creating build/bdist.linux-x86_64/wheel/libtbx/auto_build copying build/lib/libtbx/auto_build/make_bundle.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_distribution.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_installer.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/regenerate_module_files.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/bootstrap.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/package_defs.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_mac_app.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/setup_installer.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/plus_installer.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/rpath.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_windows_exe.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_base_packages.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_windows_installer.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/installer_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/__init__.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/write_gui_dispatcher_include.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_cctbx_bundle_for_installer.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_conda.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_mac_pkg.py -> build/bdist.linux-x86_64/wheel/./libtbx/auto_build copying build/lib/libtbx/tst_run_tests_parallel_retry.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_word_index_generator.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/metric_prefixes.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/callbacks.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_object_oriented_patterns.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_easy_mp.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/mpi4py.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/libtbx_refresh.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/topological_sort.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/program_template.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_math_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/python_code_parsing.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/containers.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_runtime_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/load_env.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_conda_dispatcher.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/easy_mp.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/runtime_utils.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/version.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_citation_encoding.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/xmlrpc_server_example.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/subprocess_with_fixes.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/utils.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/pyplot.py -> build/bdist.linux-x86_64/wheel/./libtbx copying build/lib/libtbx/tst_path.py -> build/bdist.linux-x86_64/wheel/./libtbx creating build/bdist.linux-x86_64/wheel/cctbx_website creating build/bdist.linux-x86_64/wheel/cctbx_website/command_line copying build/lib/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/run_pdoc_cctbx_api.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/comment_to_docstring.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/tst_comment_to_docstring.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/edit_html.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/edit_for_boost.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/command_line creating build/bdist.linux-x86_64/wheel/cctbx_website/regression copying build/lib/cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_15_doc_models_hierarchy.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_1_template.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_9_doc_maps_boxing.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_py_from_html.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/exercise.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_18_doc_programming_tips_2.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_19_doc_programming_tips_3.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_13_script_ideal_ss.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_10_doc_programming_tips_1.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_17_script_rfactors.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_2_doc_hlo_intro.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_8_doc_maps_intro.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_12_script_compare_ss.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_11_script_1.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> build/bdist.linux-x86_64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/__init__.py -> build/bdist.linux-x86_64/wheel/./cctbx_website copying build/lib/cctbx_website/run_tests.py -> build/bdist.linux-x86_64/wheel/./cctbx_website copying build/lib/cctbx_website/libtbx_refresh.py -> build/bdist.linux-x86_64/wheel/./cctbx_website creating build/bdist.linux-x86_64/wheel/cbflib_adaptbx creating build/bdist.linux-x86_64/wheel/cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/command_line/dump.py -> build/bdist.linux-x86_64/wheel/./cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/command_line/__init__.py -> build/bdist.linux-x86_64/wheel/./cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/copy_files.py -> build/bdist.linux-x86_64/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/exercise_compression.py -> build/bdist.linux-x86_64/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/__init__.py -> build/bdist.linux-x86_64/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/run_tests.py -> build/bdist.linux-x86_64/wheel/./cbflib_adaptbx running install_egg_info Copying cctbx.egg-info to build/bdist.linux-x86_64/wheel/./cctbx-2023.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/cctbx-2023.12.dist-info/WHEEL creating '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/.tmp-pqc3x_6w/cctbx-2023.12-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'annlib_adaptbx/__init__.py' adding 'annlib_adaptbx/run_tests.py' adding 'annlib_adaptbx/annlib_adaptbx/__init__.py' adding 'annlib_adaptbx/annlib_adaptbx/sample.py' adding 'annlib_adaptbx/annlib_adaptbx/self_match.py' adding 'annlib_adaptbx/source_generators/__init__.py' adding 'annlib_adaptbx/source_generators/generate_all.py' adding 'boost_adaptbx/__init__.py' adding 'boost_adaptbx/hybrid_times.py' adding 'boost_adaptbx/libtbx_refresh.py' adding 'boost_adaptbx/run_tests.py' adding 'boost_adaptbx/boost/__init__.py' adding 'boost_adaptbx/boost/optional.py' adding 'boost_adaptbx/boost/python.py' adding 'boost_adaptbx/boost/rational.py' adding 'boost_adaptbx/boost/std_pair.py' adding 'boost_adaptbx/boost/tuple.py' adding 'boost_adaptbx/command_line/__init__.py' adding 'boost_adaptbx/command_line/divide_by_zero.py' adding 'boost_adaptbx/command_line/double_overflow.py' adding 'boost_adaptbx/command_line/gcd.py' adding 'boost_adaptbx/command_line/inexact.py' adding 'boost_adaptbx/command_line/int_overflow.py' adding 'boost_adaptbx/command_line/lcm.py' adding 'boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py' adding 'boost_adaptbx/command_line/segmentation_fault.py' adding 'boost_adaptbx/command_line/show_environ_usage.py' adding 'boost_adaptbx/command_line/show_platform_info.py' adding 'boost_adaptbx/graph/__init__.py' adding 'boost_adaptbx/graph/breadth_first_search.py' adding 'boost_adaptbx/graph/clustering_algorithm.py' adding 'boost_adaptbx/graph/connected_component_algorithm.py' adding 'boost_adaptbx/graph/graph_structure_comparison.py' adding 'boost_adaptbx/graph/maximum_clique.py' adding 'boost_adaptbx/graph/metric.py' adding 'boost_adaptbx/graph/min_cut_max_flow.py' adding 'boost_adaptbx/graph/minimum_cut_enumerate.py' adding 'boost_adaptbx/graph/utility.py' adding 'cbflib_adaptbx/__init__.py' adding 'cbflib_adaptbx/copy_files.py' adding 'cbflib_adaptbx/exercise_compression.py' adding 'cbflib_adaptbx/run_tests.py' adding 'cbflib_adaptbx/command_line/__init__.py' adding 'cbflib_adaptbx/command_line/dump.py' adding 'ccp4io_adaptbx/__init__.py' adding 'ccp4io_adaptbx/copy_files.py' adding 'ccp4io_adaptbx/tst.py' adding 'cctbx/__init__.py' adding 'cctbx/adptbx.py' adding 'cctbx/anharmonic.py' adding 'cctbx/crystal_orientation.py' adding 'cctbx/dmtbx.py' adding 'cctbx/euclidean_model_matching.py' adding 'cctbx/french_wilson.py' adding 'cctbx/libtbx_refresh.py' adding 'cctbx/math_module.py' adding 'cctbx/multipolar.py' adding 'cctbx/r_free_utils.py' adding 'cctbx/run_examples.py' adding 'cctbx/run_tests.py' adding 'cctbx/statistics.py' adding 'cctbx/symmetry_search.py' adding 'cctbx/translation_search.py' adding 'cctbx/adp_restraints/__init__.py' adding 'cctbx/adp_restraints/energies.py' adding 'cctbx/adp_restraints/flags.py' adding 'cctbx/adp_restraints/tst_ext.py' adding 'cctbx/array_family/__init__.py' adding 'cctbx/array_family/flex.py' adding 'cctbx/command_line/__init__.py' adding 'cctbx/command_line/auto_sharpen.py' adding 'cctbx/command_line/brehm_diederichs.py' adding 'cctbx/command_line/cctbx_test_nightly.py' adding 'cctbx/command_line/cod_select_and_pickle.py' adding 'cctbx/command_line/diffuse.py' adding 'cctbx/command_line/eltbx.show_fp_fdp.py' adding 'cctbx/command_line/euclidean_model_matching.py' adding 'cctbx/command_line/find_reticular_twin_laws.py' adding 'cctbx/command_line/form_factor_query.py' adding 'cctbx/command_line/precession_view.py' adding 'cctbx/command_line/qscore.py' adding 'cctbx/command_line/samosa_join.py' adding 'cctbx/command_line/samosa_scale.py' adding 'cctbx/command_line/segment_and_split_map.py' adding 'cctbx/command_line/space_group_info.py' adding 'cctbx/command_line/structure_factor_timings.py' adding 'cctbx/command_line/subgroups.py' adding 'cctbx/command_line/version.py' adding 'cctbx/command_line/wavelength_units.py' adding 'cctbx/covariance/__init__.py' adding 'cctbx/crystal/__init__.py' adding 'cctbx/crystal/burzlaff_zimmermann_dewolff.py' adding 'cctbx/crystal/close_packing.py' adding 'cctbx/crystal/coordination_sequences.py' adding 'cctbx/crystal/direct_space_asu.py' adding 'cctbx/crystal/distance_based_connectivity.py' adding 'cctbx/crystal/find_best_cell.py' adding 'cctbx/crystal/reindex.py' adding 'cctbx/crystal/super_cell.py' adding 'cctbx/crystal/tst_distance_based_connectivity.py' adding 'cctbx/crystal/tst_ext.py' adding 'cctbx/crystal/tst_super_cell.py' adding 'cctbx/development/__init__.py' adding 'cctbx/development/approx_amplitude_vs_resolution.py' adding 'cctbx/development/cns_density_modification.py' adding 'cctbx/development/create_models_or_maps.py' adding 'cctbx/development/debug_utils.py' adding 'cctbx/development/direct_or_fft.py' adding 'cctbx/development/electron_density_sampling.py' adding 'cctbx/development/fmt_utils.py' adding 'cctbx/development/github.py' adding 'cctbx/development/make_cns_input.py' adding 'cctbx/development/make_settings.py' adding 'cctbx/development/random_structure.py' adding 'cctbx/development/run_shelx.py' adding 'cctbx/development/run_shelx76.py' adding 'cctbx/development/space_group_option_parser.py' adding 'cctbx/development/structure_factor_utils.py' adding 'cctbx/development/tst_cns_epsilon.py' adding 'cctbx/development/tst_cns_hl.py' adding 'cctbx/eltbx/__init__.py' adding 'cctbx/eltbx/attenuation_coefficient.py' adding 'cctbx/eltbx/chemical_elements.py' adding 'cctbx/eltbx/covalent_radii.py' adding 'cctbx/eltbx/distance_based_connectivity.py' adding 'cctbx/eltbx/e_scattering.py' adding 'cctbx/eltbx/formula.py' adding 'cctbx/eltbx/fp_fdp.py' adding 'cctbx/eltbx/gaussian_fit.py' adding 'cctbx/eltbx/henke.py' adding 'cctbx/eltbx/icsd_radii.py' adding 'cctbx/eltbx/neutron.py' adding 'cctbx/eltbx/read_custom_scattering_dict.py' adding 'cctbx/eltbx/sasaki.py' adding 'cctbx/eltbx/tiny_pse.py' adding 'cctbx/eltbx/van_der_waals_radii.py' adding 'cctbx/eltbx/wavelengths.py' adding 'cctbx/eltbx/development/__init__.py' adding 'cctbx/eltbx/development/combine_fits.py' adding 'cctbx/eltbx/development/create_n_gaussian_raw_cpp.py' adding 'cctbx/eltbx/development/e_scattering_plots.py' adding 'cctbx/eltbx/development/format_gaussian_fits.py' adding 'cctbx/eltbx/development/hydrogen_plots.py' adding 'cctbx/eltbx/development/itvc_approx.py' adding 'cctbx/eltbx/development/itvc_cross_validation.py' adding 'cctbx/eltbx/development/itvc_fits.py' adding 'cctbx/eltbx/development/itvc_kissel.py' adding 'cctbx/eltbx/development/itvc_section61_io.py' adding 'cctbx/eltbx/development/kissel_fits.py' adding 'cctbx/eltbx/development/kissel_io.py' adding 'cctbx/eltbx/development/rez_rez_grant.py' adding 'cctbx/eltbx/xray_scattering/__init__.py' adding 'cctbx/examples/__init__.py' adding 'cctbx/examples/adp_symmetry_constraints.py' adding 'cctbx/examples/all_axes.py' adding 'cctbx/examples/analyze_adp.py' adding 'cctbx/examples/ccp4_map.py' adding 'cctbx/examples/change_hand_p31.py' adding 'cctbx/examples/convert_ccp4_symop_lib.py' adding 'cctbx/examples/cr2o3_consistency_checks.py' adding 'cctbx/examples/cr2o3_primitive_cell.py' adding 'cctbx/examples/exp_i_alpha_derivatives.py' adding 'cctbx/examples/f_model_example.py' adding 'cctbx/examples/fft_map_electron_density_around_atom.py' adding 'cctbx/examples/find_distances_using_cpp_objects.py' adding 'cctbx/examples/find_sys_abs_equiv_space_groups.py' adding 'cctbx/examples/g_exp_i_alpha_derivatives.py' adding 'cctbx/examples/g_exp_i_partial_derivatives.py' adding 'cctbx/examples/getting_started.py' adding 'cctbx/examples/hirshfeld_test.py' adding 'cctbx/examples/le_page_1982_vs_lebedev_2005.py' adding 'cctbx/examples/lebedev_2005_perturbation.py' adding 'cctbx/examples/list_non_principal_continuous_shifts.py' adding 'cctbx/examples/location_part.py' adding 'cctbx/examples/map_skewness.py' adding 'cctbx/examples/maximum_subgroups.py' adding 'cctbx/examples/miller_common_sets.py' adding 'cctbx/examples/miller_transform.py' adding 'cctbx/examples/neutron_structure_factors.py' adding 'cctbx/examples/phase_o_phrenia.py' adding 'cctbx/examples/quartz_structure.py' adding 'cctbx/examples/random_f_calc.py' adding 'cctbx/examples/random_puckers.py' adding 'cctbx/examples/reduced_cell_two_folds.py' adding 'cctbx/examples/site_symmetry_constraints.py' adding 'cctbx/examples/site_symmetry_table.py' adding 'cctbx/examples/space_group_matrices.py' adding 'cctbx/examples/space_subgroups.py' adding 'cctbx/examples/steve_collins.py' adding 'cctbx/examples/structure_factor_derivatives.py' adding 'cctbx/examples/structure_factor_derivatives_2.py' adding 'cctbx/examples/structure_factor_derivatives_3.py' adding 'cctbx/examples/structure_factor_derivatives_4.py' adding 'cctbx/examples/sub_group_graph.py' adding 'cctbx/examples/symops_530.py' adding 'cctbx/examples/trigonal_r_vs_tetragonal_i.py' adding 'cctbx/examples/tst_exp_i_alpha_derivatives.py' adding 'cctbx/examples/tst_g_exp_i_alpha_derivatives.py' adding 'cctbx/examples/tst_phase_o_phrenia.py' adding 'cctbx/examples/tst_space_subgroups.py' adding 'cctbx/examples/tst_structure_factor_derivatives.py' adding 'cctbx/examples/tst_structure_factor_derivatives_2.py' adding 'cctbx/examples/tst_structure_factor_derivatives_3.py' adding 'cctbx/examples/tst_structure_factor_derivatives_4.py' adding 'cctbx/examples/unit_cell_minimizers.py' adding 'cctbx/examples/unit_cell_refinement.py' adding 'cctbx/examples/view_fft_map.py' adding 'cctbx/examples/merging/__init__.py' adding 'cctbx/examples/merging/data_subset.py' adding 'cctbx/examples/merging/data_utilities.py' adding 'cctbx/examples/merging/show_results.py' adding 'cctbx/examples/merging/sigma_correction.py' adding 'cctbx/examples/merging/task4.py' adding 'cctbx/examples/merging/test1.py' adding 'cctbx/examples/merging/test_cc_half.py' adding 'cctbx/examples/merging/test_levenberg_sparse.py' adding 'cctbx/examples/merging/tst_permutations.py' adding 'cctbx/examples/merging/samosa/__init__.py' adding 'cctbx/examples/merging/samosa/join.py' adding 'cctbx/examples/merging/samosa/per_lattice_postrefinement.py' adding 'cctbx/examples/merging/samosa/scale.py' adding 'cctbx/examples/structure_factor_calculus/__init__.py' adding 'cctbx/examples/structure_factor_calculus/site_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/sites_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/u_star_derivatives.py' adding 'cctbx/geometry/__init__.py' adding 'cctbx/geometry_restraints/__init__.py' adding 'cctbx/geometry_restraints/auto_linking_types.py' adding 'cctbx/geometry_restraints/base_geometry.py' adding 'cctbx/geometry_restraints/distance_least_squares.py' adding 'cctbx/geometry_restraints/energies.py' adding 'cctbx/geometry_restraints/flags.py' adding 'cctbx/geometry_restraints/lbfgs.py' adding 'cctbx/geometry_restraints/linking_class.py' adding 'cctbx/geometry_restraints/manager.py' adding 'cctbx/geometry_restraints/process_nonbonded_proxies.py' adding 'cctbx/geometry_restraints/standard_cif_links.py' adding 'cctbx/geometry_restraints/tst_angle_derivs.py' adding 'cctbx/geometry_restraints/tst_ext.py' adding 'cctbx/geometry_restraints/tst_motif.py' adding 'cctbx/geometry_restraints/tst_process_nonbonded_proxies.py' adding 'cctbx/geometry_restraints/tst_proxy_registry.py' adding 'cctbx/macro_mol/__init__.py' adding 'cctbx/macro_mol/rotation_parameters.py' adding 'cctbx/maptbx/__init__.py' adding 'cctbx/maptbx/auto_sharpen.py' adding 'cctbx/maptbx/box.py' adding 'cctbx/maptbx/fsc_curve.py' adding 'cctbx/maptbx/map_symmetry.py' adding 'cctbx/maptbx/mask.py' adding 'cctbx/maptbx/mem.py' adding 'cctbx/maptbx/minimization.py' adding 'cctbx/maptbx/prepare_map_for_docking.py' adding 'cctbx/maptbx/prepare_map_for_refinement.py' adding 'cctbx/maptbx/qscore.py' adding 'cctbx/maptbx/real_space_refinement_simple.py' adding 'cctbx/maptbx/refine_scales_errors.py' adding 'cctbx/maptbx/refine_sharpening.py' adding 'cctbx/maptbx/resolution_from_map_and_model.py' adding 'cctbx/maptbx/segment_and_split_map.py' adding 'cctbx/maptbx/servalcat_difference_map.py' adding 'cctbx/maptbx/tst_MapPeakLocator.py' adding 'cctbx/maptbx/tst_asymmetric_map.py' adding 'cctbx/maptbx/tst_atom_curves.py' adding 'cctbx/maptbx/tst_atom_radius_as_central_peak_width.py' adding 'cctbx/maptbx/tst_bcr.py' adding 'cctbx/maptbx/tst_ccp.py' adding 'cctbx/maptbx/tst_get_percentile_cutoffs.py' adding 'cctbx/maptbx/tst_interpolation.py' adding 'cctbx/maptbx/tst_interpolation_2.py' adding 'cctbx/maptbx/tst_loft.py' adding 'cctbx/maptbx/tst_map_peak_3d_as_2d.py' adding 'cctbx/maptbx/tst_mask.py' adding 'cctbx/maptbx/tst_peak_volume_estimate.py' adding 'cctbx/maptbx/tst_qscore.py' adding 'cctbx/maptbx/tst_real_space_refinement_simple.py' adding 'cctbx/maptbx/tst_resolution_from_map_and_model.py' adding 'cctbx/maptbx/tst_target_and_gradients.py' adding 'cctbx/maptbx/bcr/__init__.py' adding 'cctbx/maptbx/bcr/bcr.py' adding 'cctbx/maptbx/bcr/compute_tables.py' adding 'cctbx/maptbx/bcr/qmap.py' adding 'cctbx/maptbx/bcr/tst_adp_refine.py' adding 'cctbx/maptbx/bcr/tst_example.py' adding 'cctbx/maptbx/bcr/tst_qmap_02.py' adding 'cctbx/maptbx/bcr/tst_table.py' adding 'cctbx/maptbx/bcr/tst_two_atoms.py' adding 'cctbx/maptbx/bcr/tst_vrm.py' adding 'cctbx/maptbx/bcr/tst_vrm2.py' adding 'cctbx/masks/__init__.py' adding 'cctbx/merging/__init__.py' adding 'cctbx/merging/brehm_diederichs.py' adding 'cctbx/miller/__init__.py' adding 'cctbx/miller/display.py' adding 'cctbx/miller/reindexing.py' adding 'cctbx/miller/tst_map_to_asu_isym.py' adding 'cctbx/miller/tst_reindexing.py' adding 'cctbx/neutron/__init__.py' adding 'cctbx/omz/__init__.py' adding 'cctbx/omz/bfgs.py' adding 'cctbx/omz/cif_refine.py' adding 'cctbx/omz/cod_refine.py' adding 'cctbx/omz/cod_select_and_pickle.py' adding 'cctbx/omz/dev.py' adding 'cctbx/omz/eval_iso_vs_refined.py' adding 'cctbx/omz/pdb_dev.py' adding 'cctbx/omz/tardy_adaptor.py' adding 'cctbx/omz/tst_bfgs.py' adding 'cctbx/omz/tst_dev.py' adding 'cctbx/regression/__init__.py' adding 'cctbx/regression/tst_adp_aniso_restraints.py' adding 'cctbx/regression/tst_adp_constraints.py' adding 'cctbx/regression/tst_adp_constraints_cartesian.py' adding 'cctbx/regression/tst_amplitude_normalisation.py' adding 'cctbx/regression/tst_change_basis.py' adding 'cctbx/regression/tst_connectivity.py' adding 'cctbx/regression/tst_connectivity_allsym.py' adding 'cctbx/regression/tst_coordination_sequences.py' adding 'cctbx/regression/tst_create_models_or_maps.py' adding 'cctbx/regression/tst_crystal.py' adding 'cctbx/regression/tst_crystal_asu_clusters.py' adding 'cctbx/regression/tst_crystal_close_packing.py' adding 'cctbx/regression/tst_diffuse.py' adding 'cctbx/regression/tst_direct_scaling.py' adding 'cctbx/regression/tst_direct_space_asu.py' adding 'cctbx/regression/tst_emma.py' adding 'cctbx/regression/tst_expand_to_p1.py' adding 'cctbx/regression/tst_f_model.py' adding 'cctbx/regression/tst_fast_nv1995.py' adding 'cctbx/regression/tst_fcalc_fft_stability.py' adding 'cctbx/regression/tst_find_best_cell.py' adding 'cctbx/regression/tst_fourier_transform_real_part_at_x.py' adding 'cctbx/regression/tst_french_wilson.py' adding 'cctbx/regression/tst_geometry_restraints.py' adding 'cctbx/regression/tst_geometry_restraints_2.py' adding 'cctbx/regression/tst_geometry_restraints_lbfgs.py' adding 'cctbx/regression/tst_grm_modifications.py' adding 'cctbx/regression/tst_grm_modifications_rm.py' adding 'cctbx/regression/tst_grm_pickling.py' adding 'cctbx/regression/tst_grouped_data.py' adding 'cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py' adding 'cctbx/regression/tst_krivy_gruber.py' adding 'cctbx/regression/tst_loc_res.py' adding 'cctbx/regression/tst_map_is_periodic.py' adding 'cctbx/regression/tst_map_weights_for_symmetry_summation.py' adding 'cctbx/regression/tst_maptbx_box.py' adding 'cctbx/regression/tst_maptbx_mask.py' adding 'cctbx/regression/tst_maptbx_structure_factors.py' adding 'cctbx/regression/tst_match_bijvoet_mates.py' adding 'cctbx/regression/tst_math_module.py' adding 'cctbx/regression/tst_mem.py' adding 'cctbx/regression/tst_mem_2.py' adding 'cctbx/regression/tst_miller.py' adding 'cctbx/regression/tst_miller_data_manipulation.py' adding 'cctbx/regression/tst_miller_double_step_filtration.py' adding 'cctbx/regression/tst_miller_fft_map.py' adding 'cctbx/regression/tst_miller_lookup_utils.py' adding 'cctbx/regression/tst_miller_merge_equivalents.py' adding 'cctbx/regression/tst_miller_statistics.py' adding 'cctbx/regression/tst_niggli_reduction_cpp.py' adding 'cctbx/regression/tst_pair_asu_table.py' adding 'cctbx/regression/tst_pointgroup_tools.py' adding 'cctbx/regression/tst_prepare_map_for_docking.py' adding 'cctbx/regression/tst_r_free_utils.py' adding 'cctbx/regression/tst_reciprocal_space_asu.py' adding 'cctbx/regression/tst_refine_xray_curvs.py' adding 'cctbx/regression/tst_reflection_statistics.py' adding 'cctbx/regression/tst_sampled_model_density.py' adding 'cctbx/regression/tst_sf_low_res_accuracy.py' adding 'cctbx/regression/tst_sgtbx.py' adding 'cctbx/regression/tst_sgtbx_denominators.py' adding 'cctbx/regression/tst_sgtbx_harker.py' adding 'cctbx/regression/tst_sgtbx_lattice_symmetry.py' adding 'cctbx/regression/tst_sgtbx_site_constraints.py' adding 'cctbx/regression/tst_sgtbx_special_op_simplifier.py' adding 'cctbx/regression/tst_sgtbx_subgroups.py' adding 'cctbx/regression/tst_sgtbx_tidy_pickling.py' adding 'cctbx/regression/tst_show_cosets.py' adding 'cctbx/regression/tst_space_group_type_tidy_cb_op_t.py' adding 'cctbx/regression/tst_sphericity.py' adding 'cctbx/regression/tst_statistics_graphs.py' adding 'cctbx/regression/tst_triplet_generator.py' adding 'cctbx/regression/tst_twin_target.py' adding 'cctbx/regression/tst_wavelength_units.py' adding 'cctbx/regression/tst_web_change_basis.py' adding 'cctbx/regression/tst_weighting_schemes.py' adding 'cctbx/regression/tst_wilson_plot.py' adding 'cctbx/regression/tst_xray.py' adding 'cctbx/regression/tst_xray_derivatives.py' adding 'cctbx/regression/tst_xray_fast_gradients.py' adding 'cctbx/regression/tst_xray_minimization.py' adding 'cctbx/regression/tst_xray_minimization_failure.py' adding 'cctbx/regression/tst_xray_target_functors.py' adding 'cctbx/sgtbx/__init__.py' adding 'cctbx/sgtbx/bravais_types.py' adding 'cctbx/sgtbx/cosets.py' adding 'cctbx/sgtbx/harker.py' adding 'cctbx/sgtbx/lattice_symmetry.py' adding 'cctbx/sgtbx/literal_description.py' adding 'cctbx/sgtbx/plane_groups.py' adding 'cctbx/sgtbx/pointgroup_tools.py' adding 'cctbx/sgtbx/rational_matrices_point_groups.py' adding 'cctbx/sgtbx/reticular_pg_tools.py' adding 'cctbx/sgtbx/reticular_twin_laws.py' adding 'cctbx/sgtbx/show_cosets.py' adding 'cctbx/sgtbx/sub_lattice_tools.py' adding 'cctbx/sgtbx/subgroups.py' adding 'cctbx/sgtbx/symbol_confidence.py' adding 'cctbx/sgtbx/sys_abs_equiv.py' adding 'cctbx/sgtbx/direct_space_asu/__init__.py' adding 'cctbx/sgtbx/direct_space_asu/check_redundancies.py' adding 'cctbx/sgtbx/direct_space_asu/cut_plane.py' adding 'cctbx/sgtbx/direct_space_asu/facet_analysis.py' adding 'cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py' adding 'cctbx/sgtbx/direct_space_asu/reference_table.py' adding 'cctbx/sgtbx/direct_space_asu/short_cuts.py' adding 'cctbx/sgtbx/direct_space_asu/proto/__init__.py' adding 'cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py' adding 'cctbx/sgtbx/direct_space_asu/proto/tst_asu.py' adding 'cctbx/source_generators/__init__.py' adding 'cctbx/source_generators/flex_fwd_h.py' adding 'cctbx/source_generators/eltbx/__init__.py' adding 'cctbx/source_generators/eltbx/generate_henke_cpp.py' adding 'cctbx/source_generators/eltbx/generate_sasaki_cpp.py' adding 'cctbx/uctbx/__init__.py' adding 'cctbx/uctbx/gruber_1973.py' adding 'cctbx/uctbx/gruber_1973_table_1.py' adding 'cctbx/uctbx/krivy_gruber_1976.py' adding 'cctbx/uctbx/reduction_base.py' adding 'cctbx/uctbx/determine_unit_cell/__init__.py' adding 'cctbx/web/__init__.py' adding 'cctbx/web/all_axes.py' adding 'cctbx/web/browse_settings.py' adding 'cctbx/web/cgi_utils.py' adding 'cctbx/web/change_basis.py' adding 'cctbx/web/change_hand.py' adding 'cctbx/web/change_setting.py' adding 'cctbx/web/dispatcher.py' adding 'cctbx/web/emma.py' adding 'cctbx/web/explore_symmetry.py' adding 'cctbx/web/frac_cart.py' adding 'cctbx/web/io_utils.py' adding 'cctbx/web/iotbx_cif_validate.py' adding 'cctbx/web/lattice_symmetry.py' adding 'cctbx/web/libtbx_help.py' adding 'cctbx/web/multiple_cell.py' adding 'cctbx/web/phase_o_phrenia.py' adding 'cctbx/web/replay.py' adding 'cctbx/web/shelx.py' adding 'cctbx/web/structure_factors.py' adding 'cctbx/web/structure_factors_pdb.py' adding 'cctbx/web/wyckoff.py' adding 'cctbx/web/asu_gallery/__init__.py' adding 'cctbx/web/asu_gallery/guide_to_notation.py' adding 'cctbx/web/asu_gallery/jv_asu.py' adding 'cctbx/web/asu_gallery/jv_index.py' adding 'cctbx/web/asu_gallery/jvx.py' adding 'cctbx/web/asu_gallery/web_links.py' adding 'cctbx/xray/__init__.py' adding 'cctbx/xray/ext.py' adding 'cctbx/xray/minimization.py' adding 'cctbx/xray/observation_types.py' adding 'cctbx/xray/scatterer.py' adding 'cctbx/xray/structure.py' adding 'cctbx/xray/target_functors.py' adding 'cctbx/xray/weighting_schemes.py' adding 'cctbx/xray/observations/__init__.py' adding 'cctbx/xray/observations/tst_observations.py' adding 'cctbx/xray/structure_factors/__init__.py' adding 'cctbx/xray/structure_factors/algorithm.py' adding 'cctbx/xray/structure_factors/from_scatterers.py' adding 'cctbx/xray/structure_factors/from_scatterers_direct.py' adding 'cctbx/xray/structure_factors/from_scatterers_direct_parallel.py' adding 'cctbx/xray/structure_factors/from_scatterers_fft.py' adding 'cctbx/xray/structure_factors/global_counters.py' adding 'cctbx/xray/structure_factors/gradient_flags.py' adding 'cctbx/xray/structure_factors/gradients.py' adding 'cctbx/xray/structure_factors/gradients_base.py' adding 'cctbx/xray/structure_factors/gradients_direct.py' adding 'cctbx/xray/structure_factors/gradients_fft.py' adding 'cctbx/xray/structure_factors/manager.py' adding 'cctbx/xray/structure_factors/misc.py' adding 'cctbx/xray/targets/__init__.py' adding 'cctbx/xray/targets/r1.py' adding 'cctbx/xray/targets/tst_r1.py' adding 'cctbx/xray/targets/tst_shelxl_wght_ls.py' adding 'cctbx-2023.12.dist-info/licenses/LICENSE.txt' adding 'cctbx_website/__init__.py' adding 'cctbx_website/libtbx_refresh.py' adding 'cctbx_website/run_tests.py' adding 'cctbx_website/command_line/__init__.py' adding 'cctbx_website/command_line/comment_to_docstring.py' adding 'cctbx_website/command_line/edit_for_boost.py' adding 'cctbx_website/command_line/edit_html.py' adding 'cctbx_website/command_line/extract_script_from_html_cctbx_doc.py' adding 'cctbx_website/command_line/run_pdoc_cctbx_api.py' adding 'cctbx_website/command_line/tst_comment_to_docstring.py' adding 'cctbx_website/regression/__init__.py' adding 'cctbx_website/regression/exercise.py' adding 'cctbx_website/regression/tst_10_doc_programming_tips_1.py' adding 'cctbx_website/regression/tst_11_script_1.py' adding 'cctbx_website/regression/tst_12_script_compare_ss.py' adding 'cctbx_website/regression/tst_13_script_ideal_ss.py' adding 'cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py' adding 'cctbx_website/regression/tst_15_doc_models_hierarchy.py' adding 'cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py' adding 'cctbx_website/regression/tst_17_script_rfactors.py' adding 'cctbx_website/regression/tst_18_doc_programming_tips_2.py' adding 'cctbx_website/regression/tst_19_doc_programming_tips_3.py' adding 'cctbx_website/regression/tst_1_template.py' adding 'cctbx_website/regression/tst_2_doc_hlo_intro.py' adding 'cctbx_website/regression/tst_3_doc_hlo_model_manager.py' adding 'cctbx_website/regression/tst_4_doc_hlo_data_manager.py' adding 'cctbx_website/regression/tst_5_doc_hlo_map_manager.py' adding 'cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py' adding 'cctbx_website/regression/tst_7_doc_low_flex_advanced.py' adding 'cctbx_website/regression/tst_8_doc_maps_intro.py' adding 'cctbx_website/regression/tst_9_doc_maps_boxing.py' adding 'cctbx_website/regression/tst_py_from_html.py' adding 'cma_es/__init__.py' adding 'cma_es/cma_es_interface.py' adding 'cma_es/run_tests.py' adding 'cma_es/tst_cma_es.py' adding 'cootbx/__init__.py' adding 'cootbx/hydrogens_button.py' adding 'cootbx/interactive_edit.py' adding 'cootbx/ligand_checklist.py' adding 'cootbx/simple_zoom_list.py' adding 'cootbx/validation_lists.py' adding 'cootbx/view_refinement.py' adding 'cootbx/watch_file.py' adding 'cootbx/xmlrpc_server.py' adding 'fable/__init__.py' adding 'fable/cout.py' adding 'fable/equivalence.py' adding 'fable/intrinsics.py' adding 'fable/read.py' adding 'fable/run_tests.py' adding 'fable/simple_compilation.py' adding 'fable/tokenization.py' adding 'fable/tst_cout.py' adding 'fable/tst_cout_compile.py' adding 'fable/tst_equivalence.py' adding 'fable/tst_ext.py' adding 'fable/tst_read.py' adding 'fable/utils.py' adding 'fable/command_line/__init__.py' adding 'fable/command_line/cout.py' adding 'fable/command_line/fem_include_search_paths.py' adding 'fable/command_line/insert_write_at_start_of_each_procedure.py' adding 'fable/command_line/read.py' adding 'fable/command_line/show_calls.py' adding 'fable/command_line/split.py' adding 'fast_linalg/__init__.py' adding 'fftw3tbx/__init__.py' adding 'fftw3tbx/libtbx_refresh.py' adding 'fftw3tbx/tst_ext.py' adding 'gltbx/__init__.py' adding 'gltbx/extract_opengl_specs.py' adding 'gltbx/fonts.py' adding 'gltbx/generate_defines_bpl.py' adding 'gltbx/generate_fonts_ucs_cpp.py' adding 'gltbx/generate_functions_bpl.py' adding 'gltbx/gl.py' adding 'gltbx/gl_managed.py' adding 'gltbx/glu.py' adding 'gltbx/images.py' adding 'gltbx/libtbx_refresh.py' adding 'gltbx/quadrics.py' adding 'gltbx/run_tests.py' adding 'gltbx/tst.py' adding 'gltbx/tst_ellipsoids.py' adding 'gltbx/tst_fonts.py' adding 'gltbx/tst_viewer_utils.py' adding 'gltbx/util.py' adding 'gltbx/viewer_utils.py' adding 'gltbx/wx_cube.py' adding 'gltbx/wx_ellipsoids_test.py' adding 'gltbx/wx_motion_on_tab.py' adding 'gltbx/wx_scene.py' adding 'gltbx/wx_viewer.py' adding 'gltbx/wx_viewer_example.py' adding 'gltbx/wx_viewer_leapmotion.py' adding 'gltbx/wx_viewers_images.py' adding 'gltbx/command_line/__init__.py' adding 'gltbx/command_line/try_imports.py' adding 'iotbx/__init__.py' adding 'iotbx/builders.py' adding 'iotbx/builders_depending_on_smtbx.py' adding 'iotbx/cif_mtz_data_labels.py' adding 'iotbx/cli_parser.py' adding 'iotbx/crystal_symmetry_from_any.py' adding 'iotbx/csv_utils.py' adding 'iotbx/data_plots.py' adding 'iotbx/extract_xtal_data.py' adding 'iotbx/file_reader.py' adding 'iotbx/format.py' adding 'iotbx/libtbx_refresh.py' adding 'iotbx/logfiles.py' adding 'iotbx/map_manager.py' adding 'iotbx/map_model_manager.py' adding 'iotbx/map_tools.py' adding 'iotbx/merging_statistics.py' adding 'iotbx/mtrix_biomt.py' adding 'iotbx/option_parser.py' adding 'iotbx/phases.py' adding 'iotbx/phil.py' adding 'iotbx/poscar.py' adding 'iotbx/pymol.py' adding 'iotbx/ranges.py' adding 'iotbx/reflection_file_converter.py' adding 'iotbx/reflection_file_editor.py' adding 'iotbx/reflection_file_reader.py' adding 'iotbx/reflection_file_utils.py' adding 'iotbx/run_tests.py' adding 'iotbx/simple_parser.py' adding 'iotbx/symmetry.py' adding 'iotbx/table_one.py' adding 'iotbx/wildcard.py' adding 'iotbx/PrettyPrint/__init__.py' adding 'iotbx/PrettyPrint/tables.py' adding 'iotbx/bioinformatics/__init__.py' adding 'iotbx/bioinformatics/alignment_as_hsearch.py' adding 'iotbx/bioinformatics/ebi_wu_blast_xml.py' adding 'iotbx/bioinformatics/homologues.py' adding 'iotbx/bioinformatics/local_blast.py' adding 'iotbx/bioinformatics/ncbi_blast_xml.py' adding 'iotbx/bioinformatics/pdb_info.py' adding 'iotbx/bioinformatics/pubmed.py' adding 'iotbx/bioinformatics/structure.py' adding 'iotbx/bioinformatics/xmlbuild.py' adding 'iotbx/ccp4_map/__init__.py' adding 'iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py' adding 'iotbx/ccp4_map/tst.py' adding 'iotbx/cif/__init__.py' adding 'iotbx/cif/builders.py' adding 'iotbx/cif/citations.py' adding 'iotbx/cif/cod_tools.py' adding 'iotbx/cif/crystal_symmetry_from_cif.py' adding 'iotbx/cif/errors.py' adding 'iotbx/cif/geometry.py' adding 'iotbx/cif/model.py' adding 'iotbx/cif/restraint_file_merge.py' adding 'iotbx/cif/restraints.py' adding 'iotbx/cif/validation.py' adding 'iotbx/cns/__init__.py' adding 'iotbx/cns/crystal_symmetry_from_inp.py' adding 'iotbx/cns/crystal_symmetry_from_sdb.py' adding 'iotbx/cns/crystal_symmetry_utils.py' adding 'iotbx/cns/index_fobs_sigma_reader.py' adding 'iotbx/cns/miller_array.py' adding 'iotbx/cns/pdb_remarks.py' adding 'iotbx/cns/reflection_reader.py' adding 'iotbx/cns/sdb_reader.py' adding 'iotbx/cns/sdb_writer.py' adding 'iotbx/cns/space_group_symbols.py' adding 'iotbx/cns/tst_cns.py' adding 'iotbx/cns/xray_structure.py' adding 'iotbx/command_line/__init__.py' adding 'iotbx/command_line/biomt_reconstruction.py' adding 'iotbx/command_line/blast_pdb.py' adding 'iotbx/command_line/build_phil_cache.py' adding 'iotbx/command_line/cbf_read.py' adding 'iotbx/command_line/cif.as_miller_arrays.py' adding 'iotbx/command_line/cif.as_xray_structure.py' adding 'iotbx/command_line/cif.validate.py' adding 'iotbx/command_line/cif_as_pdb.py' adding 'iotbx/command_line/cns.reflection_reader.py' adding 'iotbx/command_line/cns.sdb_reader.py' adding 'iotbx/command_line/cns.transfer_crystal_symmetry.py' adding 'iotbx/command_line/cns_as_mtz.py' adding 'iotbx/command_line/crystal_symmetry_from_any.py' adding 'iotbx/command_line/csv_as_mtz.py' adding 'iotbx/command_line/dano_as_amplitudes.py' adding 'iotbx/command_line/detector_image_as_png.py' adding 'iotbx/command_line/distance_least_squares.py' adding 'iotbx/command_line/dtrek.to_cns.py' adding 'iotbx/command_line/effective_resolution.py' adding 'iotbx/command_line/emma.py' adding 'iotbx/command_line/explore_metric_symmetry.py' adding 'iotbx/command_line/export_scalepack_unmerged.py' adding 'iotbx/command_line/file_reader.py' adding 'iotbx/command_line/flip_symmetric_amino_acids.py' adding 'iotbx/command_line/french_wilson.py' adding 'iotbx/command_line/get_pubmed_citation.py' adding 'iotbx/command_line/lattice_symmetry.py' adding 'iotbx/command_line/merging_statistics.py' adding 'iotbx/command_line/mtrix_reconstruction.py' adding 'iotbx/command_line/mtz.dump.py' adding 'iotbx/command_line/mtz_as_cif.py' adding 'iotbx/command_line/patterson_map.py' adding 'iotbx/command_line/pdb.as_xray_structure.py' adding 'iotbx/command_line/pdb.b_factor_stats.py' adding 'iotbx/command_line/pdb.box_around_molecule.py' adding 'iotbx/command_line/pdb.hierarchy.py' adding 'iotbx/command_line/pdb.insert_scale_records.py' adding 'iotbx/command_line/pdb.join_fragment_files.py' adding 'iotbx/command_line/pdb.link_as_geometry_restraints_edits.py' adding 'iotbx/command_line/pdb.print_sequence.py' adding 'iotbx/command_line/pdb.superpose_atoms_by_name.py' adding 'iotbx/command_line/pdb.superpose_centers_of_mass.py' adding 'iotbx/command_line/pdb_add_conformations.py' adding 'iotbx/command_line/pdb_as_cif.py' adding 'iotbx/command_line/pdb_as_fasta.py' adding 'iotbx/command_line/pdb_cif_conversion.py' adding 'iotbx/command_line/pdb_get_citation.py' adding 'iotbx/command_line/pdb_labels_comparison.py' adding 'iotbx/command_line/pdb_labels_diff.py' adding 'iotbx/command_line/pdb_remediator.py' adding 'iotbx/command_line/pdb_show_connectivity.py' adding 'iotbx/command_line/pdb_split_models.py' adding 'iotbx/command_line/phil.py' adding 'iotbx/command_line/poscar_as_xray_structure.py' adding 'iotbx/command_line/r_free_flags_accumulation.py' adding 'iotbx/command_line/r_free_flags_as_cns.py' adding 'iotbx/command_line/r_free_flags_completion_simple.py' adding 'iotbx/command_line/reflection_file_converter.py' adding 'iotbx/command_line/reflection_file_editor.py' adding 'iotbx/command_line/reflection_file_reader.py' adding 'iotbx/command_line/reflection_statistics.py' adding 'iotbx/command_line/reindex.py' adding 'iotbx/command_line/shelx.as_cif.py' adding 'iotbx/command_line/shelx.as_xray_structure.py' adding 'iotbx/command_line/shelx.dump_as_python.py' adding 'iotbx/command_line/show_distances.py' adding 'iotbx/command_line/show_systematic_absences.py' adding 'iotbx/command_line/simple_map_coefficients.py' adding 'iotbx/command_line/sort_atoms.py' adding 'iotbx/command_line/split_data_cif.py' adding 'iotbx/command_line/symmetry_search.py' adding 'iotbx/command_line/unique_with_biomt.py' adding 'iotbx/command_line/xplor.map.show_summary.py' adding 'iotbx/data_manager/__init__.py' adding 'iotbx/data_manager/common.py' adding 'iotbx/data_manager/json.py' adding 'iotbx/data_manager/map_coefficients.py' adding 'iotbx/data_manager/miller_array.py' adding 'iotbx/data_manager/model.py' adding 'iotbx/data_manager/ncs_spec.py' adding 'iotbx/data_manager/phil.py' adding 'iotbx/data_manager/real_map.py' adding 'iotbx/data_manager/restraint.py' adding 'iotbx/data_manager/sequence.py' adding 'iotbx/data_manager/yaml.py' adding 'iotbx/detectors/__init__.py' adding 'iotbx/detectors/active_area_filter.py' adding 'iotbx/detectors/adsc.py' adding 'iotbx/detectors/adsc_minicbf.py' adding 'iotbx/detectors/adsc_module.py' adding 'iotbx/detectors/beam_center_convention.py' adding 'iotbx/detectors/bruker.py' adding 'iotbx/detectors/cbf.py' adding 'iotbx/detectors/cspad_detector_formats.py' adding 'iotbx/detectors/detectorbase.py' adding 'iotbx/detectors/dtrek.py' adding 'iotbx/detectors/edf.py' adding 'iotbx/detectors/eiger.py' adding 'iotbx/detectors/eiger_minicbf.py' adding 'iotbx/detectors/generic_detector.py' adding 'iotbx/detectors/hamamatsu.py' adding 'iotbx/detectors/image_from_http_request.py' adding 'iotbx/detectors/macscience.py' adding 'iotbx/detectors/mar.py' adding 'iotbx/detectors/marIP.py' adding 'iotbx/detectors/noir.py' adding 'iotbx/detectors/npy.py' adding 'iotbx/detectors/pilatus_minicbf.py' adding 'iotbx/detectors/pilatus_slice.py' adding 'iotbx/detectors/raxis.py' adding 'iotbx/detectors/raxis_nonsquare.py' adding 'iotbx/detectors/raxisbase.py' adding 'iotbx/detectors/saturn.py' adding 'iotbx/detectors/test_mar.py' adding 'iotbx/detectors/test_raxis2.py' adding 'iotbx/detectors/tst_adsc.py' adding 'iotbx/detectors/tst_cbf_comp_read_meth.py' adding 'iotbx/detectors/tst_debug_write.py' adding 'iotbx/detectors/tst_detectors.py' adding 'iotbx/detectors/tst_py_cbf.py' adding 'iotbx/detectors/url_support.py' adding 'iotbx/detectors/context/__init__.py' adding 'iotbx/detectors/context/camera_convention.py' adding 'iotbx/detectors/context/config_detector.py' adding 'iotbx/detectors/context/endstation.py' adding 'iotbx/detectors/context/endstation_max_iv_trial.py' adding 'iotbx/detectors/context/spot_xy_convention.py' adding 'iotbx/detectors/util/__init__.py' adding 'iotbx/detectors/util/filters.py' adding 'iotbx/dsn6/__init__.py' adding 'iotbx/dsn6/tst.py' adding 'iotbx/dtrek/__init__.py' adding 'iotbx/dtrek/crystal_symmetry_from_ref.py' adding 'iotbx/dtrek/dtrek_symmetry_dict.py' adding 'iotbx/dtrek/reflnlist_reader.py' adding 'iotbx/examples/__init__.py' adding 'iotbx/examples/direct_methods_light.py' adding 'iotbx/examples/libtbx_phil_examples.py' adding 'iotbx/examples/mtz_convert_free_to_work.py' adding 'iotbx/examples/mtz_free_flipper.py' adding 'iotbx/examples/pdb_hierarchy.py' adding 'iotbx/examples/pdb_shake.py' adding 'iotbx/examples/pdb_split_chains.py' adding 'iotbx/examples/pdb_symmetry_copies.py' adding 'iotbx/examples/pdb_tardy_conf_sampling_simple.py' adding 'iotbx/examples/pdb_to_map_simple.py' adding 'iotbx/examples/pdbx_mmcif_tutorial.py' adding 'iotbx/examples/prepare_model_for_rsr.py' adding 'iotbx/examples/recalculate_phenix_refine_r_factors.py' adding 'iotbx/examples/shelx_latt_sym_to_space_group_symbol.py' adding 'iotbx/examples/tst_mtz_free_flipper.py' adding 'iotbx/examples/pdb_truncate_to_ala/__init__.py' adding 'iotbx/examples/pdb_truncate_to_ala/tst.py' adding 'iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py' adding 'iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py' adding 'iotbx/examples/pdb_truncate_to_ala/v2_simple.py' adding 'iotbx/examples/pdb_truncate_to_ala/v3_better.py' adding 'iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py' adding 'iotbx/file_io/__init__.py' adding 'iotbx/file_io/_maps.py' adding 'iotbx/file_io/detection.py' adding 'iotbx/file_io/reader.py' adding 'iotbx/file_io/text_detection.py' adding 'iotbx/fullprof/__init__.py' adding 'iotbx/fullprof/read_pcr.py' adding 'iotbx/fullprof/write_pcr.py' adding 'iotbx/gui_tools/__init__.py' adding 'iotbx/gui_tools/cif_conversions.py' adding 'iotbx/gui_tools/import_data_and_flags.py' adding 'iotbx/gui_tools/models.py' adding 'iotbx/gui_tools/reflections.py' adding 'iotbx/gui_tools/tst.py' adding 'iotbx/kriber/__init__.py' adding 'iotbx/kriber/strudat.py' adding 'iotbx/kriber/tst_strudat.py' adding 'iotbx/mrcfile/__init__.py' adding 'iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py' adding 'iotbx/mtz/__init__.py' adding 'iotbx/mtz/crystal_symmetry_from_mtz.py' adding 'iotbx/mtz/extract_from_symmetry_lib.py' adding 'iotbx/mtz/tst.py' adding 'iotbx/mtz/tst_dano.py' adding 'iotbx/mtz/tst_ext.py' adding 'iotbx/mtz/tst_extract_from_symmetry_lib.py' adding 'iotbx/mtz/tst_miller_dict.py' adding 'iotbx/mtz/tst_unmerged.py' adding 'iotbx/ncs/__init__.py' adding 'iotbx/pdb/__init__.py' adding 'iotbx/pdb/aa_utils.py' adding 'iotbx/pdb/amino_acid_codes.py' adding 'iotbx/pdb/atom_name_interpretation.py' adding 'iotbx/pdb/atom_selection.py' adding 'iotbx/pdb/cryst1_interpretation.py' adding 'iotbx/pdb/crystal_symmetry_from_pdb.py' adding 'iotbx/pdb/download.py' adding 'iotbx/pdb/experiment_type.py' adding 'iotbx/pdb/extract_rfactors_resolutions_sigma.py' adding 'iotbx/pdb/fetch.py' adding 'iotbx/pdb/forward_compatible_pdb_cif_conversion.py' adding 'iotbx/pdb/hierarchy.py' adding 'iotbx/pdb/hybrid_36.py' adding 'iotbx/pdb/misc_records_output.py' adding 'iotbx/pdb/mmcif.py' adding 'iotbx/pdb/modified_aa_names.py' adding 'iotbx/pdb/modified_rna_dna_names.py' adding 'iotbx/pdb/nucleic_acid_codes.py' adding 'iotbx/pdb/pdb_v3_cif_conversion.py' adding 'iotbx/pdb/pdbe.py' adding 'iotbx/pdb/rcsb.py' adding 'iotbx/pdb/records.py' adding 'iotbx/pdb/remark_290_interpretation.py' adding 'iotbx/pdb/remark_2_interpretation.py' adding 'iotbx/pdb/remark_3_interpretation.py' adding 'iotbx/pdb/rna_dna_detection.py' adding 'iotbx/pdb/secondary_structure.py' adding 'iotbx/pdb/tst_atom_name_interpretation.py' adding 'iotbx/pdb/tst_atom_selection.py' adding 'iotbx/pdb/tst_atom_selection_string.py' adding 'iotbx/pdb/tst_ext.py' adding 'iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py' adding 'iotbx/pdb/tst_hierarchy.py' adding 'iotbx/pdb/tst_hierarchy_atom_sort.py' adding 'iotbx/pdb/tst_hierarchy_flip_symmetric.py' adding 'iotbx/pdb/tst_hierarchy_flip_symmetric_2.py' adding 'iotbx/pdb/tst_input_pickling.py' adding 'iotbx/pdb/tst_mmcif.py' adding 'iotbx/pdb/tst_mmcif_hierarchy.py' adding 'iotbx/pdb/tst_mmcif_hierarchy_2.py' adding 'iotbx/pdb/tst_pdb.py' adding 'iotbx/pdb/tst_read_mtrix_records_from_cif.py' adding 'iotbx/pdb/tst_rna_dna_atom_names.py' adding 'iotbx/pdb/tst_secondary_structure.py' adding 'iotbx/pdb/tst_secondary_structure_2.py' adding 'iotbx/pdb/tst_tls.py' adding 'iotbx/pdb/tst_utils.py' adding 'iotbx/pdb/utils.py' adding 'iotbx/pdb/web_service_api.py' adding 'iotbx/pdb/xray_structure.py' adding 'iotbx/pdb/remediation/__init__.py' adding 'iotbx/pdb/remediation/remediator.py' adding 'iotbx/pdb/remediation/tst_remediator.py' adding 'iotbx/programs/__init__.py' adding 'iotbx/programs/box_around_molecule.py' adding 'iotbx/programs/split_data_cif.py' adding 'iotbx/programs/unique_with_biomt.py' adding 'iotbx/regression/__init__.py' adding 'iotbx/regression/tst_add_conformations.py' adding 'iotbx/regression/tst_all_chain_ids.py' adding 'iotbx/regression/tst_atom_selections_10k.py' adding 'iotbx/regression/tst_bioinformatics.py' adding 'iotbx/regression/tst_box_around_molecule.py' adding 'iotbx/regression/tst_cif_1.py' adding 'iotbx/regression/tst_cif_as_pdb_1atom.py' adding 'iotbx/regression/tst_cli_parser.py' adding 'iotbx/regression/tst_crystal_symmetry_from_any.py' adding 'iotbx/regression/tst_csv_utils.py' adding 'iotbx/regression/tst_data_manager.py' adding 'iotbx/regression/tst_data_plots.py' adding 'iotbx/regression/tst_examples.py' adding 'iotbx/regression/tst_export_scalepack_unmerged.py' adding 'iotbx/regression/tst_extract_xtal_data.py' adding 'iotbx/regression/tst_fetch.py' adding 'iotbx/regression/tst_file_io.py' adding 'iotbx/regression/tst_file_reader.py' adding 'iotbx/regression/tst_generate_n_char_string.py' adding 'iotbx/regression/tst_group_rounding.py' adding 'iotbx/regression/tst_hierarchy_altlocs.py' adding 'iotbx/regression/tst_hierarchy_copy_select.py' adding 'iotbx/regression/tst_hierarchy_forward_compatible_pdb.py' adding 'iotbx/regression/tst_hierarchy_id_str.py' adding 'iotbx/regression/tst_hierarchy_long_chain_ids_1.py' adding 'iotbx/regression/tst_hierarchy_long_resname_1.py' adding 'iotbx/regression/tst_hierarchy_long_resname_2.py' adding 'iotbx/regression/tst_hierarchy_long_resname_3.py' adding 'iotbx/regression/tst_hierarchy_long_resname_4.py' adding 'iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py' adding 'iotbx/regression/tst_hierarchy_occupancies_rounding.py' adding 'iotbx/regression/tst_hierarchy_pdb_v3.py' adding 'iotbx/regression/tst_lattice_symmetry.py' adding 'iotbx/regression/tst_map_manager.py' adding 'iotbx/regression/tst_map_manager_2.py' adding 'iotbx/regression/tst_map_manager_wrapping.py' adding 'iotbx/regression/tst_map_model_manager.py' adding 'iotbx/regression/tst_map_model_manager_2.py' adding 'iotbx/regression/tst_map_model_manager_3.py' adding 'iotbx/regression/tst_map_model_manager_4.py' adding 'iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py' adding 'iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py' adding 'iotbx/regression/tst_map_model_manager_call_consistency.py' adding 'iotbx/regression/tst_map_model_manager_cif.py' adding 'iotbx/regression/tst_map_model_manager_external_sharpening_7.py' adding 'iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py' adding 'iotbx/regression/tst_map_model_manager_local_resolution_10.py' adding 'iotbx/regression/tst_map_model_manager_model_sharpening_5.py' adding 'iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py' adding 'iotbx/regression/tst_map_model_manager_tls_from_map_8.py' adding 'iotbx/regression/tst_map_tools.py' adding 'iotbx/regression/tst_merging_statistics.py' adding 'iotbx/regression/tst_miller_sort_asu.py' adding 'iotbx/regression/tst_mmcif_input.py' adding 'iotbx/regression/tst_mmcif_multimodel.py' adding 'iotbx/regression/tst_mmcif_segids.py' adding 'iotbx/regression/tst_mmcif_to_from_hierarchy.py' adding 'iotbx/regression/tst_mrc_io.py' adding 'iotbx/regression/tst_mtz_as_cif.py' adding 'iotbx/regression/tst_patterson.py' adding 'iotbx/regression/tst_pdb_as_cif.py' adding 'iotbx/regression/tst_pdb_as_fasta.py' adding 'iotbx/regression/tst_pdb_cif_cells.py' adding 'iotbx/regression/tst_pdb_cif_inputs.py' adding 'iotbx/regression/tst_pdb_link_records.py' adding 'iotbx/regression/tst_pdbx_mmcif_tutorial.py' adding 'iotbx/regression/tst_phases.py' adding 'iotbx/regression/tst_phil.py' adding 'iotbx/regression/tst_poscar.py' adding 'iotbx/regression/tst_reflection_file_editor.py' adding 'iotbx/regression/tst_reflection_file_reader.py' adding 'iotbx/regression/tst_reflection_file_utils.py' adding 'iotbx/regression/tst_reflection_statistics.py' adding 'iotbx/regression/tst_reindex.py' adding 'iotbx/regression/tst_restraints_merge.py' adding 'iotbx/regression/tst_selected_hierarchy_flip.py' adding 'iotbx/regression/tst_show_systematic_absences.py' adding 'iotbx/regression/tst_simple_map_coefficients.py' adding 'iotbx/regression/tst_simple_parser.py' adding 'iotbx/regression/tst_sort_atoms.py' adding 'iotbx/regression/tst_split_data_cif.py' adding 'iotbx/regression/tst_split_models.py' adding 'iotbx/regression/tst_symmetry.py' adding 'iotbx/regression/tst_text_detection.py' adding 'iotbx/regression/tst_wildcard.py' adding 'iotbx/regression/tst_xray_scale.py' adding 'iotbx/regression/utils.py' adding 'iotbx/regression/ncs/__init__.py' adding 'iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py' adding 'iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py' adding 'iotbx/regression/ncs/tst_ncs.py' adding 'iotbx/regression/ncs/tst_ncs_groups_preprocessing.py' adding 'iotbx/regression/ncs/tst_ncs_input.py' adding 'iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py' adding 'iotbx/regression/ncs/tst_ncs_reordered_chains.py' adding 'iotbx/regression/ncs/tst_ncs_search_broken_chain.py' adding 'iotbx/regression/ncs/tst_ncs_search_ligs.py' adding 'iotbx/regression/ncs/tst_ncs_search_shortcut_1.py' adding 'iotbx/regression/ncs/tst_ncs_user_selections.py' adding 'iotbx/regression/ncs/tst_ncs_without_validation.py' adding 'iotbx/scalepack/__init__.py' adding 'iotbx/scalepack/crystal_symmetry_from_hkl.py' adding 'iotbx/scalepack/merge.py' adding 'iotbx/scalepack/no_merge_original_index.py' adding 'iotbx/scalepack/space_group_dictionary.py' adding 'iotbx/scalepack/tst_merge.py' adding 'iotbx/scalepack/tst_no_merge_original_index.py' adding 'iotbx/shelx/__init__.py' adding 'iotbx/shelx/crystal_symmetry_from_ins.py' adding 'iotbx/shelx/errors.py' adding 'iotbx/shelx/fcf.py' adding 'iotbx/shelx/fvar_encoding.py' adding 'iotbx/shelx/hklf.py' adding 'iotbx/shelx/lexer.py' adding 'iotbx/shelx/parsers.py' adding 'iotbx/shelx/tokens.py' adding 'iotbx/shelx/tst_fvar_encoding.py' adding 'iotbx/shelx/tst_hklf.py' adding 'iotbx/shelx/tst_lex_parse_build.py' adding 'iotbx/shelx/tst_writer.py' adding 'iotbx/shelx/write_ins.py' adding 'iotbx/shelx/writer.py' adding 'iotbx/solve/__init__.py' adding 'iotbx/solve/crystal_symmetry_from_inp.py' adding 'iotbx/solve/fpfm_reader.py' adding 'iotbx/xds/__init__.py' adding 'iotbx/xds/blank_cbf.py' adding 'iotbx/xds/correction.py' adding 'iotbx/xds/crystal_symmetry_from_hkl.py' adding 'iotbx/xds/gain_cbf.py' adding 'iotbx/xds/geometry.py' adding 'iotbx/xds/integrate_hkl.py' adding 'iotbx/xds/read_ascii.py' adding 'iotbx/xds/spot_xds.py' adding 'iotbx/xds/xds_cbf.py' adding 'iotbx/xds/xds_inp.py' adding 'iotbx/xds/xparm.py' adding 'iotbx/xplor/__init__.py' adding 'iotbx/xplor/crystal_symmetry_from_map.py' adding 'iotbx/xplor/ext.py' adding 'iotbx/xplor/map.py' adding 'iotbx/xplor/tst_xplormap.py' adding 'libtbx/__init__.py' adding 'libtbx/assert_utils.py' adding 'libtbx/binary_search.py' adding 'libtbx/callbacks.py' adding 'libtbx/citations.py' adding 'libtbx/clear_paths.py' adding 'libtbx/cli.py' adding 'libtbx/cluster.py' adding 'libtbx/clusterTests.py' adding 'libtbx/code_analysis.py' adding 'libtbx/complex_math.py' adding 'libtbx/configure.py' adding 'libtbx/console_utils.py' adding 'libtbx/containers.py' adding 'libtbx/cpp_function_name.py' adding 'libtbx/crossmingw.py' adding 'libtbx/dlite.py' adding 'libtbx/easy_mp.py' adding 'libtbx/easy_pickle.py' adding 'libtbx/easy_profile.py' adding 'libtbx/easy_run.py' adding 'libtbx/env_config.py' adding 'libtbx/file_clutter.py' adding 'libtbx/find_reference_cycles.py' adding 'libtbx/forward_compatibility.py' adding 'libtbx/introspection.py' adding 'libtbx/libtbx_refresh.py' adding 'libtbx/load_env.py' adding 'libtbx/log.py' adding 'libtbx/math_utils.py' adding 'libtbx/metric_prefixes.py' adding 'libtbx/mpi4py.py' adding 'libtbx/object_oriented_patterns.py' adding 'libtbx/objgraph.py' adding 'libtbx/option_parser.py' adding 'libtbx/path.py' adding 'libtbx/pkg_utils.py' adding 'libtbx/program_template.py' adding 'libtbx/progress.py' adding 'libtbx/pyframe.py' adding 'libtbx/pyplot.py' adding 'libtbx/python_code_parsing.py' adding 'libtbx/resource_monitor.py' adding 'libtbx/run_tests.py' adding 'libtbx/runtime_utils.py' adding 'libtbx/simplexml.py' adding 'libtbx/smart_open.py' adding 'libtbx/start_print_trace.py' adding 'libtbx/str_utils.py' adding 'libtbx/subprocess_with_fixes.py' adding 'libtbx/table_utils.py' adding 'libtbx/thread_utils.py' adding 'libtbx/topological_sort.py' adding 'libtbx/try_hello_world_c.py' adding 'libtbx/tst_add_docstrings_with_ai.py' adding 'libtbx/tst_binary_search.py' adding 'libtbx/tst_citation_encoding.py' adding 'libtbx/tst_citations.py' adding 'libtbx/tst_conda_dispatcher.py' adding 'libtbx/tst_containers.py' adding 'libtbx/tst_dlite.py' adding 'libtbx/tst_easy_mp.py' adding 'libtbx/tst_easy_mp_multicore.py' adding 'libtbx/tst_easy_mp_state.py' adding 'libtbx/tst_easy_pickle.py' adding 'libtbx/tst_find_unused_imports.py' adding 'libtbx/tst_fully_buffered_timeout.py' adding 'libtbx/tst_guided_coding.py' adding 'libtbx/tst_mahalanobis.py' adding 'libtbx/tst_math_utils.py' adding 'libtbx/tst_object_oriented_patterns.py' adding 'libtbx/tst_path.py' adding 'libtbx/tst_program_template.py' adding 'libtbx/tst_python_code_parsing.py' adding 'libtbx/tst_representation.py' adding 'libtbx/tst_run_tests_parallel_retry.py' adding 'libtbx/tst_run_tests_parallel_unique_dirs.py' adding 'libtbx/tst_runtime_utils.py' adding 'libtbx/tst_scheduling.py' adding 'libtbx/tst_str_utils.py' adding 'libtbx/tst_t96_roster.py' adding 'libtbx/tst_thread_utils.py' adding 'libtbx/tst_topological_sort.py' adding 'libtbx/tst_utils.py' adding 'libtbx/tst_version.py' adding 'libtbx/tst_word_index_generator.py' adding 'libtbx/tst_xmlrpc_utils.py' adding 'libtbx/utils.py' adding 'libtbx/version.py' adding 'libtbx/wingide.py' adding 'libtbx/word_index_generator.py' adding 'libtbx/xmlrpc_server_example.py' adding 'libtbx/xmlrpc_utils.py' adding 'libtbx/auto_build/__init__.py' adding 'libtbx/auto_build/bootstrap.py' adding 'libtbx/auto_build/create_cctbx_bundle_for_installer.py' adding 'libtbx/auto_build/create_installer.py' adding 'libtbx/auto_build/create_mac_app.py' adding 'libtbx/auto_build/create_mac_pkg.py' adding 'libtbx/auto_build/create_windows_exe.py' adding 'libtbx/auto_build/create_windows_installer.py' adding 'libtbx/auto_build/install_base_packages.py' adding 'libtbx/auto_build/install_conda.py' adding 'libtbx/auto_build/install_distribution.py' adding 'libtbx/auto_build/installer_utils.py' adding 'libtbx/auto_build/make_bundle.py' adding 'libtbx/auto_build/package_defs.py' adding 'libtbx/auto_build/plus_installer.py' adding 'libtbx/auto_build/regenerate_module_files.py' adding 'libtbx/auto_build/rpath.py' adding 'libtbx/auto_build/setup_installer.py' adding 'libtbx/auto_build/write_gui_dispatcher_include.py' adding 'libtbx/bundle/__init__.py' adding 'libtbx/bundle/copy_all.py' adding 'libtbx/bundle/copy_build_libtbx.py' adding 'libtbx/bundle/copy_runtime_sources.py' adding 'libtbx/bundle/install_bat.py' adding 'libtbx/bundle/install_csh.py' adding 'libtbx/bundle/utils.py' adding 'libtbx/command_line/__init__.py' adding 'libtbx/command_line/add_docstrings_with_ai.py' adding 'libtbx/command_line/analyse_code_comments.py' adding 'libtbx/command_line/any2unix.py' adding 'libtbx/command_line/assert_line_count.py' adding 'libtbx/command_line/assert_not_show_diff.py' adding 'libtbx/command_line/assert_stdin.py' adding 'libtbx/command_line/assert_stdin_contains_strings.py' adding 'libtbx/command_line/assert_stdin_ends_with.py' adding 'libtbx/command_line/bootstrap.py' adding 'libtbx/command_line/bundle_as_exe.py' adding 'libtbx/command_line/cctbx_chunk.py' adding 'libtbx/command_line/check_libcpp.py' adding 'libtbx/command_line/clean_clutter.py' adding 'libtbx/command_line/clear_paths.py' adding 'libtbx/command_line/create_cctbx_bundle_for_installer.py' adding 'libtbx/command_line/create_install_script_bat.py' adding 'libtbx/command_line/create_installer.py' adding 'libtbx/command_line/create_mac_app.py' adding 'libtbx/command_line/create_selfx.py' adding 'libtbx/command_line/create_unzipsfx.py' adding 'libtbx/command_line/create_windows_exe.py' adding 'libtbx/command_line/dtrace.py' adding 'libtbx/command_line/easy_qsub.py' adding 'libtbx/command_line/env_run.py' adding 'libtbx/command_line/epydoc_run.py' adding 'libtbx/command_line/extract_code_from_txt.py' adding 'libtbx/command_line/find_clutter.py' adding 'libtbx/command_line/find_files.py' adding 'libtbx/command_line/find_in_repositories.py' adding 'libtbx/command_line/find_old_style_classes.py' adding 'libtbx/command_line/find_pdb_mmcif_problems.py' adding 'libtbx/command_line/find_reserved_names.py' adding 'libtbx/command_line/find_under_build.py' adding 'libtbx/command_line/find_untested.py' adding 'libtbx/command_line/find_unused_imports.py' adding 'libtbx/command_line/find_unused_imports_crude.py' adding 'libtbx/command_line/git_avoid_merges.py' adding 'libtbx/command_line/help.py' adding 'libtbx/command_line/import_all_ext.py' adding 'libtbx/command_line/import_all_python.py' adding 'libtbx/command_line/install.py' adding 'libtbx/command_line/install_conda.py' adding 'libtbx/command_line/ipython_shell_start.py' adding 'libtbx/command_line/line_count.py' adding 'libtbx/command_line/list_files.py' adding 'libtbx/command_line/list_modules.py' adding 'libtbx/command_line/list_source_files_sorted_by_size.py' adding 'libtbx/command_line/make_dist.py' adding 'libtbx/command_line/make_sphinx_html.py' adding 'libtbx/command_line/nequal.py' adding 'libtbx/command_line/parallel_simple.py' adding 'libtbx/command_line/path_utility.py' adding 'libtbx/command_line/phil.py' adding 'libtbx/command_line/prime_factors_of.py' adding 'libtbx/command_line/printenv.py' adding 'libtbx/command_line/py_compile_all.py' adding 'libtbx/command_line/raise_exception_for_testing.py' adding 'libtbx/command_line/reindent.py' adding 'libtbx/command_line/remote_processing.py' adding 'libtbx/command_line/remove_tree.py' adding 'libtbx/command_line/remove_unused_imports.py' adding 'libtbx/command_line/resource_monitor_plot.py' adding 'libtbx/command_line/run_pickled_function.py' adding 'libtbx/command_line/run_tests_parallel.py' adding 'libtbx/command_line/scons.py' adding 'libtbx/command_line/seconds_since_the_epoch.py' adding 'libtbx/command_line/sge_available_slots.py' adding 'libtbx/command_line/sge_qstat_counts.py' adding 'libtbx/command_line/show_all_on_path.py' adding 'libtbx/command_line/show_bin_path.py' adding 'libtbx/command_line/show_build_options.py' adding 'libtbx/command_line/show_build_path.py' adding 'libtbx/command_line/show_but_no_repr.py' adding 'libtbx/command_line/show_commands.py' adding 'libtbx/command_line/show_date_and_time.py' adding 'libtbx/command_line/show_dist_paths.py' adding 'libtbx/command_line/show_env.py' adding 'libtbx/command_line/show_environ_usage.py' adding 'libtbx/command_line/show_full_command_path.py' adding 'libtbx/command_line/show_host_and_user.py' adding 'libtbx/command_line/show_include_paths.py' adding 'libtbx/command_line/show_lib_path.py' adding 'libtbx/command_line/show_module_dependencies.py' adding 'libtbx/command_line/show_number_of_processors.py' adding 'libtbx/command_line/show_numeric_version.py' adding 'libtbx/command_line/show_numpy_version.py' adding 'libtbx/command_line/show_python_dependencies.py' adding 'libtbx/command_line/show_python_sys_executable.py' adding 'libtbx/command_line/show_pythonpath.py' adding 'libtbx/command_line/show_repository_paths.py' adding 'libtbx/command_line/show_tests.py' adding 'libtbx/command_line/show_variable_names.py' adding 'libtbx/command_line/sphinx_build.py' adding 'libtbx/command_line/start_binary_bundle.py' adding 'libtbx/command_line/start_process.py' adding 'libtbx/command_line/wait_for_file.py' adding 'libtbx/development/__init__.py' adding 'libtbx/development/except_Exception.py' adding 'libtbx/development/timers.py' adding 'libtbx/development/xcode_build_phase.py' adding 'libtbx/jobs/__init__.py' adding 'libtbx/jobs/fake_slurm.py' adding 'libtbx/jobs/manager.py' adding 'libtbx/jobs/tst_batch.py' adding 'libtbx/jobs/tst_local.py' adding 'libtbx/jobs/tst_manager.py' adding 'libtbx/jobs/tst_slurm.py' adding 'libtbx/jobs/backends/__init__.py' adding 'libtbx/jobs/backends/base.py' adding 'libtbx/jobs/backends/batch.py' adding 'libtbx/jobs/backends/local.py' adding 'libtbx/jobs/backends/slurm.py' adding 'libtbx/langchain/__init__.py' adding 'libtbx/langchain/phenix_knowledge.py' adding 'libtbx/langchain/run_build_db.py' adding 'libtbx/langchain/run_inspect_db.py' adding 'libtbx/langchain/run_query_docs.py' adding 'libtbx/langchain/agent/__init__.py' adding 'libtbx/langchain/agent/advice_preprocessor.py' adding 'libtbx/langchain/agent/api_client.py' adding 'libtbx/langchain/agent/best_files_tracker.py' adding 'libtbx/langchain/agent/command_builder.py' adding 'libtbx/langchain/agent/command_postprocessor.py' adding 'libtbx/langchain/agent/config_loader.py' adding 'libtbx/langchain/agent/contract.py' adding 'libtbx/langchain/agent/directive_extractor.py' adding 'libtbx/langchain/agent/directive_validator.py' adding 'libtbx/langchain/agent/display_data_model.py' adding 'libtbx/langchain/agent/docs_tools.py' adding 'libtbx/langchain/agent/dry_run_manager.py' adding 'libtbx/langchain/agent/error_analyzer.py' adding 'libtbx/langchain/agent/error_classifier.py' adding 'libtbx/langchain/agent/event_formatter.py' adding 'libtbx/langchain/agent/event_log.py' adding 'libtbx/langchain/agent/failure_diagnoser.py' adding 'libtbx/langchain/agent/file_metadata.py' adding 'libtbx/langchain/agent/file_utils.py' adding 'libtbx/langchain/agent/format_validation.py' adding 'libtbx/langchain/agent/gate_evaluator.py' adding 'libtbx/langchain/agent/generate_logic_doc.py' adding 'libtbx/langchain/agent/generate_safety_docs.py' adding 'libtbx/langchain/agent/graph.py' adding 'libtbx/langchain/agent/graph_nodes.py' adding 'libtbx/langchain/agent/graph_state.py' adding 'libtbx/langchain/agent/hypothesis_evaluator.py' adding 'libtbx/langchain/agent/intent_classifier.py' adding 'libtbx/langchain/agent/kb_tags.py' adding 'libtbx/langchain/agent/log_section_extractor.py' adding 'libtbx/langchain/agent/memory.py' adding 'libtbx/langchain/agent/metric_evaluator.py' adding 'libtbx/langchain/agent/metrics_analyzer.py' adding 'libtbx/langchain/agent/mtz_inspector.py' adding 'libtbx/langchain/agent/nl_to_phil.py' adding 'libtbx/langchain/agent/pattern_manager.py' adding 'libtbx/langchain/agent/perceive_checks.py' adding 'libtbx/langchain/agent/phenix_utils.py' adding 'libtbx/langchain/agent/phil_validator.py' adding 'libtbx/langchain/agent/placement_checker.py' adding 'libtbx/langchain/agent/plan_generator.py' adding 'libtbx/langchain/agent/planner.py' adding 'libtbx/langchain/agent/program_registry.py' adding 'libtbx/langchain/agent/program_validator.py' adding 'libtbx/langchain/agent/r_factors.py' adding 'libtbx/langchain/agent/rate_limit_handler.py' adding 'libtbx/langchain/agent/raw_advice_scanner.py' adding 'libtbx/langchain/agent/rules_selector.py' adding 'libtbx/langchain/agent/sanity_checker.py' adding 'libtbx/langchain/agent/session.py' adding 'libtbx/langchain/agent/session_tools.py' adding 'libtbx/langchain/agent/strategy_memory.py' adding 'libtbx/langchain/agent/structure_model.py' adding 'libtbx/langchain/agent/template_builder.py' adding 'libtbx/langchain/agent/thinking_agent.py' adding 'libtbx/langchain/agent/transport.py' adding 'libtbx/langchain/agent/tst_agent_enhancements.py' adding 'libtbx/langchain/agent/utils.py' adding 'libtbx/langchain/agent/validation_history.py' adding 'libtbx/langchain/agent/validation_inspector.py' adding 'libtbx/langchain/agent/workflow_engine.py' adding 'libtbx/langchain/agent/workflow_state.py' adding 'libtbx/langchain/agent/yaml_tools.py' adding 'libtbx/langchain/analysis/__init__.py' adding 'libtbx/langchain/analysis/agent_session_analyzer.py' adding 'libtbx/langchain/analysis/analysis_request.py' adding 'libtbx/langchain/analysis/analyzer.py' adding 'libtbx/langchain/analysis/log_info.py' adding 'libtbx/langchain/analysis/orientation_strip.py' adding 'libtbx/langchain/analysis/program_identity.py' adding 'libtbx/langchain/analysis/report_verifier.py' adding 'libtbx/langchain/analysis/state_extractor.py' adding 'libtbx/langchain/analysis/summarizer.py' adding 'libtbx/langchain/commands/__init__.py' adding 'libtbx/langchain/commands/base.py' adding 'libtbx/langchain/core/__init__.py' adding 'libtbx/langchain/core/_build_info.py' adding 'libtbx/langchain/core/_version.py' adding 'libtbx/langchain/core/llm.py' adding 'libtbx/langchain/core/types.py' adding 'libtbx/langchain/examples/__init__.py' adding 'libtbx/langchain/knowledge/__init__.py' adding 'libtbx/langchain/knowledge/api_schema.py' adding 'libtbx/langchain/knowledge/explanation_prompts.py' adding 'libtbx/langchain/knowledge/html_report_template.py' adding 'libtbx/langchain/knowledge/kb_loader.py' adding 'libtbx/langchain/knowledge/metric_patterns.py' adding 'libtbx/langchain/knowledge/phenix_programs.py' adding 'libtbx/langchain/knowledge/plan_schema.py' adding 'libtbx/langchain/knowledge/plan_template_loader.py' adding 'libtbx/langchain/knowledge/program_registration.py' adding 'libtbx/langchain/knowledge/prompts.py' adding 'libtbx/langchain/knowledge/prompts_hybrid.py' adding 'libtbx/langchain/knowledge/summary_display.py' adding 'libtbx/langchain/knowledge/thinking_prompts.py' adding 'libtbx/langchain/knowledge/yaml_loader.py' adding 'libtbx/langchain/log_extraction/__init__.py' adding 'libtbx/langchain/log_extraction/corpus_paths.py' adding 'libtbx/langchain/log_extraction/log_structure_extractor.py' adding 'libtbx/langchain/log_extraction/run_controls.py' adding 'libtbx/langchain/log_extraction/run_measurements.py' adding 'libtbx/langchain/log_extraction/validate.py' adding 'libtbx/langchain/rag/__init__.py' adding 'libtbx/langchain/rag/_chroma_resilience.py' adding 'libtbx/langchain/rag/document_loader.py' adding 'libtbx/langchain/rag/retriever.py' adding 'libtbx/langchain/rag/vector_store.py' adding 'libtbx/langchain/strategies/__init__.py' adding 'libtbx/langchain/strategies/base.py' adding 'libtbx/langchain/tests/__init__.py' adding 'libtbx/langchain/tests/analyze_tutorial_runs.py' adding 'libtbx/langchain/tests/audit_phase_rename.py' adding 'libtbx/langchain/tests/canary_utils.py' adding 'libtbx/langchain/tests/run_all_tests.py' adding 'libtbx/langchain/tests/test_api_keys.py' adding 'libtbx/langchain/tests/tst_abort_message_all_stops.py' adding 'libtbx/langchain/tests/tst_action_item_1.py' adding 'libtbx/langchain/tests/tst_advice_preprocessing.py' adding 'libtbx/langchain/tests/tst_after_program_fill_from_raw.py' adding 'libtbx/langchain/tests/tst_after_program_prompt.py' adding 'libtbx/langchain/tests/tst_agent_build_info.py' adding 'libtbx/langchain/tests/tst_analysis_request.py' adding 'libtbx/langchain/tests/tst_api_schema.py' adding 'libtbx/langchain/tests/tst_audit_fixes.py' adding 'libtbx/langchain/tests/tst_autobuild_hl_recovery.py' adding 'libtbx/langchain/tests/tst_autobuild_sequence_waiver.py' adding 'libtbx/langchain/tests/tst_autosol_bugs.py' adding 'libtbx/langchain/tests/tst_backward_compat.py' adding 'libtbx/langchain/tests/tst_best_files_tracker.py' adding 'libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py' adding 'libtbx/langchain/tests/tst_canary.py' adding 'libtbx/langchain/tests/tst_cc_key_extraction.py' adding 'libtbx/langchain/tests/tst_classify_mtz_type_001.py' adding 'libtbx/langchain/tests/tst_command_builder.py' adding 'libtbx/langchain/tests/tst_contract_compliance.py' adding 'libtbx/langchain/tests/tst_copies_tracking.py' adding 'libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py' adding 'libtbx/langchain/tests/tst_cryoem_stop_validation.py' adding 'libtbx/langchain/tests/tst_data_input_filter.py' adding 'libtbx/langchain/tests/tst_decision_flow.py' adding 'libtbx/langchain/tests/tst_default_models.py' adding 'libtbx/langchain/tests/tst_density_modify_experiment_type.py' adding 'libtbx/langchain/tests/tst_dependencies.py' adding 'libtbx/langchain/tests/tst_diagnosed_failure_stop.py' adding 'libtbx/langchain/tests/tst_diagnostic_messages.py' adding 'libtbx/langchain/tests/tst_directive_extractor.py' adding 'libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py' adding 'libtbx/langchain/tests/tst_directive_extractor_grounding.py' adding 'libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py' adding 'libtbx/langchain/tests/tst_directive_layer_diagnostics.py' adding 'libtbx/langchain/tests/tst_directive_validation.py' adding 'libtbx/langchain/tests/tst_directive_validator.py' adding 'libtbx/langchain/tests/tst_directive_validator_typo_hints.py' adding 'libtbx/langchain/tests/tst_directives_integration.py' adding 'libtbx/langchain/tests/tst_display_data_model.py' adding 'libtbx/langchain/tests/tst_dock_and_stop.py' adding 'libtbx/langchain/tests/tst_docs_tools.py' adding 'libtbx/langchain/tests/tst_dry_run.py' adding 'libtbx/langchain/tests/tst_error_analyzer.py' adding 'libtbx/langchain/tests/tst_error_classifier.py' adding 'libtbx/langchain/tests/tst_event_formatter_file_categories.py' adding 'libtbx/langchain/tests/tst_event_system.py' adding 'libtbx/langchain/tests/tst_explanation_prompts.py' adding 'libtbx/langchain/tests/tst_extended_stop_phrasings.py' adding 'libtbx/langchain/tests/tst_extract_raw_advice.py' adding 'libtbx/langchain/tests/tst_extraction_failure_visibility.py' adding 'libtbx/langchain/tests/tst_fabricated_stop_condition.py' adding 'libtbx/langchain/tests/tst_file_categorization.py' adding 'libtbx/langchain/tests/tst_file_categorizer.py' adding 'libtbx/langchain/tests/tst_file_encoding.py' adding 'libtbx/langchain/tests/tst_file_utils.py' adding 'libtbx/langchain/tests/tst_fix_verification.py' adding 'libtbx/langchain/tests/tst_force_no_ai_server.py' adding 'libtbx/langchain/tests/tst_gate_evaluator.py' adding 'libtbx/langchain/tests/tst_general_resolver.py' adding 'libtbx/langchain/tests/tst_grounding_stop_after_requested.py' adding 'libtbx/langchain/tests/tst_h17_strip_executor.py' adding 'libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py' adding 'libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py' adding 'libtbx/langchain/tests/tst_hardcoded_cleanup.py' adding 'libtbx/langchain/tests/tst_history_analysis.py' adding 'libtbx/langchain/tests/tst_hypothesis_evaluator.py' adding 'libtbx/langchain/tests/tst_initialize_plan_smoke.py' adding 'libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py' adding 'libtbx/langchain/tests/tst_integration.py' adding 'libtbx/langchain/tests/tst_intent_classifier.py' adding 'libtbx/langchain/tests/tst_langchain_tools.py' adding 'libtbx/langchain/tests/tst_ligand_workflow_restart.py' adding 'libtbx/langchain/tests/tst_ligandfit_patterns.py' adding 'libtbx/langchain/tests/tst_llm_unavailable_notice.py' adding 'libtbx/langchain/tests/tst_log_extractor.py' adding 'libtbx/langchain/tests/tst_log_structure_extractor.py' adding 'libtbx/langchain/tests/tst_metric_patterns.py' adding 'libtbx/langchain/tests/tst_metrics_analyzer.py' adding 'libtbx/langchain/tests/tst_mode_isolation.py' adding 'libtbx/langchain/tests/tst_mtz_crosscheck.py' adding 'libtbx/langchain/tests/tst_mtz_phases_session_blocking.py' adding 'libtbx/langchain/tests/tst_n_bugs.py' adding 'libtbx/langchain/tests/tst_new_programs.py' adding 'libtbx/langchain/tests/tst_obs_labels_auto_fill.py' adding 'libtbx/langchain/tests/tst_old_client_compat.py' adding 'libtbx/langchain/tests/tst_optional_dep_resilience.py' adding 'libtbx/langchain/tests/tst_pattern_manager.py' adding 'libtbx/langchain/tests/tst_perceive_stop_checks.py' adding 'libtbx/langchain/tests/tst_phase0_static_audit.py' adding 'libtbx/langchain/tests/tst_phase1_contract_gaps.py' adding 'libtbx/langchain/tests/tst_phase2_path_consistency.py' adding 'libtbx/langchain/tests/tst_phase2b_activation.py' adding 'libtbx/langchain/tests/tst_phase3_bug5.py' adding 'libtbx/langchain/tests/tst_phase3_serialization_symmetry.py' adding 'libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py' adding 'libtbx/langchain/tests/tst_phase4_history_flags.py' adding 'libtbx/langchain/tests/tst_phase5_error_classification.py' adding 'libtbx/langchain/tests/tst_phase6_category_consumer.py' adding 'libtbx/langchain/tests/tst_phase7_routing_simulation.py' adding 'libtbx/langchain/tests/tst_phase8_command_building.py' adding 'libtbx/langchain/tests/tst_phase9_llm_perturbation.py' adding 'libtbx/langchain/tests/tst_phaser_multimodel.py' adding 'libtbx/langchain/tests/tst_phil_namespace_cleaner.py' adding 'libtbx/langchain/tests/tst_phil_validation.py' adding 'libtbx/langchain/tests/tst_placement_skip_rebuild.py' adding 'libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py' adding 'libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py' adding 'libtbx/langchain/tests/tst_plan_generator.py' adding 'libtbx/langchain/tests/tst_plan_lead_program_offer.py' adding 'libtbx/langchain/tests/tst_plan_schema.py' adding 'libtbx/langchain/tests/tst_planning_framework.py' adding 'libtbx/langchain/tests/tst_portkey_embedding_model.py' adding 'libtbx/langchain/tests/tst_predict_and_build_no_ncs.py' adding 'libtbx/langchain/tests/tst_preprocessor_file_override.py' adding 'libtbx/langchain/tests/tst_program_identity.py' adding 'libtbx/langchain/tests/tst_program_registration.py' adding 'libtbx/langchain/tests/tst_program_requirements.py' adding 'libtbx/langchain/tests/tst_protocol_version.py' adding 'libtbx/langchain/tests/tst_provider_error_classification.py' adding 'libtbx/langchain/tests/tst_provider_lock.py' adding 'libtbx/langchain/tests/tst_raw_advice_scanner.py' adding 'libtbx/langchain/tests/tst_reactive_deviation_hold.py' adding 'libtbx/langchain/tests/tst_reasoning_command_divergence.py' adding 'libtbx/langchain/tests/tst_rebuild_template_selection.py' adding 'libtbx/langchain/tests/tst_refine_final_rfree.py' adding 'libtbx/langchain/tests/tst_report_verifier.py' adding 'libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py' adding 'libtbx/langchain/tests/tst_resume_reopen_stages.py' adding 'libtbx/langchain/tests/tst_rfree_flags_missing.py' adding 'libtbx/langchain/tests/tst_rfree_generate_guard.py' adding 'libtbx/langchain/tests/tst_rfree_lock_reconciliation.py' adding 'libtbx/langchain/tests/tst_rfree_resolution_stop.py' adding 'libtbx/langchain/tests/tst_safe_float_consolidation.py' adding 'libtbx/langchain/tests/tst_sanity_checker.py' adding 'libtbx/langchain/tests/tst_scenario_tracer.py' adding 'libtbx/langchain/tests/tst_sequence_only_routing.py' adding 'libtbx/langchain/tests/tst_session_directives.py' adding 'libtbx/langchain/tests/tst_session_summary.py' adding 'libtbx/langchain/tests/tst_session_tools.py' adding 'libtbx/langchain/tests/tst_settings_list_coercion.py' adding 'libtbx/langchain/tests/tst_shared_code_imports.py' adding 'libtbx/langchain/tests/tst_silent_stop_abort_messages.py' adding 'libtbx/langchain/tests/tst_simple_extractor_validation.py' adding 'libtbx/langchain/tests/tst_skip_promotion.py' adding 'libtbx/langchain/tests/tst_skip_to_program.py' adding 'libtbx/langchain/tests/tst_solve_action_keywords.py' adding 'libtbx/langchain/tests/tst_space_group_validation.py' adding 'libtbx/langchain/tests/tst_spurious_stop_after_requested.py' adding 'libtbx/langchain/tests/tst_standalone_consistency.py' adding 'libtbx/langchain/tests/tst_state_serialization.py' adding 'libtbx/langchain/tests/tst_step1f_single_emit.py' adding 'libtbx/langchain/tests/tst_stop_condition_false_positive.py' adding 'libtbx/langchain/tests/tst_stop_condition_fix.py' adding 'libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py' adding 'libtbx/langchain/tests/tst_stop_reason_codes.py' adding 'libtbx/langchain/tests/tst_stop_reason_prompt.py' adding 'libtbx/langchain/tests/tst_strategy_memory.py' adding 'libtbx/langchain/tests/tst_structure_model.py' adding 'libtbx/langchain/tests/tst_summary_display.py' adding 'libtbx/langchain/tests/tst_summary_file.py' adding 'libtbx/langchain/tests/tst_supported_providers_single_source.py' adding 'libtbx/langchain/tests/tst_template.py' adding 'libtbx/langchain/tests/tst_thinking_agent.py' adding 'libtbx/langchain/tests/tst_thinking_defense.py' adding 'libtbx/langchain/tests/tst_transport.py' adding 'libtbx/langchain/tests/tst_transport_surfaces.py' adding 'libtbx/langchain/tests/tst_user_advice_filter.py' adding 'libtbx/langchain/tests/tst_utils.py' adding 'libtbx/langchain/tests/tst_v112_13_fixes.py' adding 'libtbx/langchain/tests/tst_v120_providers.py' adding 'libtbx/langchain/tests/tst_validate_file_overrides.py' adding 'libtbx/langchain/tests/tst_validate_step_after_program_guard.py' adding 'libtbx/langchain/tests/tst_validation_history.py' adding 'libtbx/langchain/tests/tst_workflow_complete_stop.py' adding 'libtbx/langchain/tests/tst_workflow_state.py' adding 'libtbx/langchain/tests/tst_yaml_config.py' adding 'libtbx/langchain/tests/tst_yaml_tools.py' adding 'libtbx/langchain/tests/integration/__init__.py' adding 'libtbx/langchain/tests/llm/__init__.py' adding 'libtbx/langchain/tests/llm/canary_check.py' adding 'libtbx/langchain/tests/llm/framework.py' adding 'libtbx/langchain/tests/llm/run_llm_tests.py' adding 'libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py' adding 'libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py' adding 'libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py' adding 'libtbx/langchain/tests/llm/tst_c1_raw_authority.py' adding 'libtbx/langchain/tests/llm/tst_directive_extraction.py' adding 'libtbx/langchain/tests/llm/tst_framework_self.py' adding 'libtbx/langchain/tests/llm/tst_planning.py' adding 'libtbx/langchain/utils/__init__.py' adding 'libtbx/langchain/utils/query.py' adding 'libtbx/langchain/utils/run_utils.py' adding 'libtbx/langchain/utils/text_processing.py' adding 'libtbx/phil/__init__.py' adding 'libtbx/phil/command_line.py' adding 'libtbx/phil/experimental.py' adding 'libtbx/phil/gui_objects.py' adding 'libtbx/phil/interface.py' adding 'libtbx/phil/parser.py' adding 'libtbx/phil/tokenizer.py' adding 'libtbx/phil/tst.py' adding 'libtbx/phil/tst_experimental.py' adding 'libtbx/phil/tst_interface.py' adding 'libtbx/phil/tst_tokenizer.py' adding 'libtbx/program_utils/__init__.py' adding 'libtbx/program_utils/result.py' adding 'libtbx/program_utils/statistics_info.py' adding 'libtbx/queuing_system_utils/__init__.py' adding 'libtbx/queuing_system_utils/communication.py' adding 'libtbx/queuing_system_utils/generic.py' adding 'libtbx/queuing_system_utils/looping.py' adding 'libtbx/queuing_system_utils/lsf.py' adding 'libtbx/queuing_system_utils/pbs_utils.py' adding 'libtbx/queuing_system_utils/remote.py' adding 'libtbx/queuing_system_utils/scheduling.py' adding 'libtbx/queuing_system_utils/scheduling_helpers.py' adding 'libtbx/queuing_system_utils/sge_utils.py' adding 'libtbx/queuing_system_utils/tst.py' adding 'libtbx/queuing_system_utils/processing/__init__.py' adding 'libtbx/queuing_system_utils/processing/errors.py' adding 'libtbx/queuing_system_utils/processing/polling.py' adding 'libtbx/queuing_system_utils/processing/status.py' adding 'libtbx/queuing_system_utils/processing/submission.py' adding 'libtbx/queuing_system_utils/processing/transfer.py' adding 'libtbx/queuing_system_utils/processing/util.py' adding 'libtbx/scheduling/__init__.py' adding 'libtbx/scheduling/cluster_handler.py' adding 'libtbx/scheduling/file_queue.py' adding 'libtbx/scheduling/job_scheduler.py' adding 'libtbx/scheduling/mainthread.py' adding 'libtbx/scheduling/mp_handler.py' adding 'libtbx/scheduling/parallel_for.py' adding 'libtbx/scheduling/philgen.py' adding 'libtbx/scheduling/process_pool.py' adding 'libtbx/scheduling/result.py' adding 'libtbx/scheduling/shared_resource.py' adding 'libtbx/scheduling/socket_queue.py' adding 'libtbx/scheduling/stacktrace.py' adding 'libtbx/scheduling/thread_handler.py' adding 'libtbx/server/FileClient.py' adding 'libtbx/server/FileServer.py' adding 'libtbx/server/FileSocket.py' adding 'libtbx/server/SocketServer.py' adding 'libtbx/server/StartServer.py' adding 'libtbx/server/__init__.py' adding 'libtbx/sphinx/__init__.py' adding 'libtbx/sphinx/phil.py' adding 'libtbx/sphinx/pubmed.py' adding 'libtbx/sphinx/python_string.py' adding 'libtbx/test_utils/__init__.py' adding 'libtbx/test_utils/parallel.py' adding 'libtbx/test_utils/t96_roster.py' adding 'mmtbx/__init__.py' adding 'mmtbx/arrays.py' adding 'mmtbx/clashes.py' adding 'mmtbx/domains_from_pae.py' adding 'mmtbx/f_model_info.py' adding 'mmtbx/find_peaks.py' adding 'mmtbx/grow_density.py' adding 'mmtbx/invariant_domain.py' adding 'mmtbx/lattice.py' adding 'mmtbx/libtbx_refresh.py' adding 'mmtbx/map_tools.py' adding 'mmtbx/model_vs_data.py' adding 'mmtbx/msa.py' adding 'mmtbx/pdb_distances.py' adding 'mmtbx/pdb_symmetry.py' adding 'mmtbx/pdbtools.py' adding 'mmtbx/process_predicted_model.py' adding 'mmtbx/proq2.py' adding 'mmtbx/real_space_correlation.py' adding 'mmtbx/resolve_resources.py' adding 'mmtbx/restraints.py' adding 'mmtbx/run_tests.py' adding 'mmtbx/superpose.py' adding 'mmtbx/xmanip.py' adding 'mmtbx/xmanip_tasks.py' adding 'mmtbx/alignment/__init__.py' adding 'mmtbx/atomic_environment_vectors/__init__.py' adding 'mmtbx/atomic_environment_vectors/tst.py' adding 'mmtbx/building/__init__.py' adding 'mmtbx/building/cablam_idealization.py' adding 'mmtbx/building/extend_sidechains.py' adding 'mmtbx/building/loop_idealization.py' adding 'mmtbx/building/merge_models.py' adding 'mmtbx/building/minimize_chain.py' adding 'mmtbx/building/tst_extend_sidechains.py' adding 'mmtbx/building/tst_extend_sidechains_2.py' adding 'mmtbx/building/ligands/__init__.py' adding 'mmtbx/building/ligands/lifi.py' adding 'mmtbx/building/ligands/tst_00.py' adding 'mmtbx/building/loop_closure/__init__.py' adding 'mmtbx/building/loop_closure/berkeley_ramalyze.py' adding 'mmtbx/building/loop_closure/ccd.py' adding 'mmtbx/building/loop_closure/starting_conformations.py' adding 'mmtbx/building/loop_closure/utils.py' adding 'mmtbx/bulk_solvent/__init__.py' adding 'mmtbx/bulk_solvent/bulk_solvent_and_scaling.py' adding 'mmtbx/bulk_solvent/example.py' adding 'mmtbx/bulk_solvent/example2.py' adding 'mmtbx/bulk_solvent/f_model_all_scales.py' adding 'mmtbx/bulk_solvent/kbu_refinery.py' adding 'mmtbx/bulk_solvent/mosaic.py' adding 'mmtbx/bulk_solvent/multi_mask_bulk_solvent.py' adding 'mmtbx/bulk_solvent/scaler.py' adding 'mmtbx/bulk_solvent/tst_aniso_scaler.py' adding 'mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py' adding 'mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py' adding 'mmtbx/bulk_solvent/tst_flat_nonuniform.py' adding 'mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py' adding 'mmtbx/bulk_solvent/tst_mosaic.py' adding 'mmtbx/bulk_solvent/tst_scaler.py' adding 'mmtbx/chemical_components/__init__.py' adding 'mmtbx/chemical_components/cif_parser.py' adding 'mmtbx/chemical_components/tst.py' adding 'mmtbx/command_line/__init__.py' adding 'mmtbx/command_line/altloc_remediate.py' adding 'mmtbx/command_line/angle.py' adding 'mmtbx/command_line/apply_ncs_to_ligand.py' adding 'mmtbx/command_line/arginine_geometry.py' adding 'mmtbx/command_line/atom_valence_simple.py' adding 'mmtbx/command_line/barbed_wire_analysis.py' adding 'mmtbx/command_line/cablam.py' adding 'mmtbx/command_line/cablam_idealization.py' adding 'mmtbx/command_line/cbetadev.py' adding 'mmtbx/command_line/cc_star.py' adding 'mmtbx/command_line/chiral_validation.py' adding 'mmtbx/command_line/cif_as_mtz.py' adding 'mmtbx/command_line/clashscore.py' adding 'mmtbx/command_line/clashscore2.py' adding 'mmtbx/command_line/comparama.py' adding 'mmtbx/command_line/debug_riding.py' adding 'mmtbx/command_line/density_modification.py' adding 'mmtbx/command_line/development_aev.py' adding 'mmtbx/command_line/development_fem.py' adding 'mmtbx/command_line/distance_difference.py' adding 'mmtbx/command_line/dynamics.py' adding 'mmtbx/command_line/electrons.py' adding 'mmtbx/command_line/emringer.py' adding 'mmtbx/command_line/emringer_score.py' adding 'mmtbx/command_line/estimate_bijvoet_ratio.py' adding 'mmtbx/command_line/f000.py' adding 'mmtbx/command_line/fab_elbow_angle.py' adding 'mmtbx/command_line/fake_f_obs.py' adding 'mmtbx/command_line/fetch_pdb.py' adding 'mmtbx/command_line/find_peaks_holes.py' adding 'mmtbx/command_line/find_residue_in_pdb.py' adding 'mmtbx/command_line/find_tls_groups.py' adding 'mmtbx/command_line/fmodel.py' adding 'mmtbx/command_line/fobs_minus_fobs_map.py' adding 'mmtbx/command_line/geometry_minimization.py' adding 'mmtbx/command_line/grow_density.py' adding 'mmtbx/command_line/hbond.py' adding 'mmtbx/command_line/helix_sheet_recs_as_pdb_files.py' adding 'mmtbx/command_line/holton_geometry_validation.py' adding 'mmtbx/command_line/hydrogenate.py' adding 'mmtbx/command_line/kinemage.py' adding 'mmtbx/command_line/ligand_restraints_validation.py' adding 'mmtbx/command_line/map_box.py' adding 'mmtbx/command_line/map_comparison.py' adding 'mmtbx/command_line/map_to_model_histogram.py' adding 'mmtbx/command_line/map_to_structure_factors.py' adding 'mmtbx/command_line/maps.py' adding 'mmtbx/command_line/mask.py' adding 'mmtbx/command_line/massage_data.py' adding 'mmtbx/command_line/matthews.py' adding 'mmtbx/command_line/maximum_entropy_map.py' adding 'mmtbx/command_line/model_idealization.py' adding 'mmtbx/command_line/model_map.py' adding 'mmtbx/command_line/model_model_distances.py' adding 'mmtbx/command_line/model_vs_data.py' adding 'mmtbx/command_line/model_vs_map.py' adding 'mmtbx/command_line/model_vs_sequence.py' adding 'mmtbx/command_line/models_as_chains.py' adding 'mmtbx/command_line/molprobity.py' adding 'mmtbx/command_line/mon_lib_cif_triage.py' adding 'mmtbx/command_line/mp_geo.py' adding 'mmtbx/command_line/mp_validate_bonds.py' adding 'mmtbx/command_line/mtz2map.py' adding 'mmtbx/command_line/next_gen_atom_typing.py' adding 'mmtbx/command_line/next_gen_residue_typing.py' adding 'mmtbx/command_line/nonbonded_overlaps.py' adding 'mmtbx/command_line/omegalyze.py' adding 'mmtbx/command_line/pdb_atom_selection.py' adding 'mmtbx/command_line/pdb_interpretation.py' adding 'mmtbx/command_line/pdbtools.py' adding 'mmtbx/command_line/perigee.py' adding 'mmtbx/command_line/plan_sad_experiment.py' adding 'mmtbx/command_line/polder.py' adding 'mmtbx/command_line/prepare_pdb_deposition.py' adding 'mmtbx/command_line/probe2.py' adding 'mmtbx/command_line/probescore_ligand.py' adding 'mmtbx/command_line/process_predicted_model.py' adding 'mmtbx/command_line/prune_model.py' adding 'mmtbx/command_line/quantum_interface.py' adding 'mmtbx/command_line/r_factor_statistics.py' adding 'mmtbx/command_line/rama_z.py' adding 'mmtbx/command_line/ramalyze.py' adding 'mmtbx/command_line/rank_scale_map.py' adding 'mmtbx/command_line/real_space_correlation.py' adding 'mmtbx/command_line/real_space_diff_map.py' adding 'mmtbx/command_line/rebuild_cablam_cache.py' adding 'mmtbx/command_line/rebuild_rotarama_cache.py' adding 'mmtbx/command_line/reciprocal_space_arrays.py' adding 'mmtbx/command_line/reduce2.py' adding 'mmtbx/command_line/reduce_cryoem_resolution.py' adding 'mmtbx/command_line/refine_anomalous_substructure.py' adding 'mmtbx/command_line/remove_outliers.py' adding 'mmtbx/command_line/ribbons.py' adding 'mmtbx/command_line/rigid_bond_test.py' adding 'mmtbx/command_line/ringer.py' adding 'mmtbx/command_line/rna_validate.py' adding 'mmtbx/command_line/rna_validate_bonds.py' adding 'mmtbx/command_line/rna_validate_puckers.py' adding 'mmtbx/command_line/rna_validate_suites.py' adding 'mmtbx/command_line/rotalyze.py' adding 'mmtbx/command_line/search_pdb_symmetry.py' adding 'mmtbx/command_line/secondary_structure_restraints.py' adding 'mmtbx/command_line/secondary_structure_validation.py' adding 'mmtbx/command_line/select_best_starting_model.py' adding 'mmtbx/command_line/show_r_factors_by_shell.py' adding 'mmtbx/command_line/sisa.py' adding 'mmtbx/command_line/sort_hetatms.py' adding 'mmtbx/command_line/ss_idealization.py' adding 'mmtbx/command_line/suitename.py' adding 'mmtbx/command_line/suitename_old.py' adding 'mmtbx/command_line/super.py' adding 'mmtbx/command_line/superpose.py' adding 'mmtbx/command_line/taam_minus_iam.py' adding 'mmtbx/command_line/table_one.py' adding 'mmtbx/command_line/tls.py' adding 'mmtbx/command_line/tls_analysis.py' adding 'mmtbx/command_line/tls_as_xyz.py' adding 'mmtbx/command_line/undowser.py' adding 'mmtbx/command_line/undowser2.py' adding 'mmtbx/command_line/validate_H_cl_app.py' adding 'mmtbx/command_line/validate_ligands.py' adding 'mmtbx/command_line/validation_summary.py' adding 'mmtbx/command_line/verify_mon_lib_data.py' adding 'mmtbx/command_line/water_b_factors.py' adding 'mmtbx/command_line/where_is_that_cif_file.py' adding 'mmtbx/command_line/xmanip.py' adding 'mmtbx/command_line/xtrapol8.py' adding 'mmtbx/command_line/xtriage.py' adding 'mmtbx/conformation_dependent_library/LinkedResidues.py' adding 'mmtbx/conformation_dependent_library/__init__.py' adding 'mmtbx/conformation_dependent_library/altloc_weighting.py' adding 'mmtbx/conformation_dependent_library/bond_angle_registry.py' adding 'mmtbx/conformation_dependent_library/cdl_database.py' adding 'mmtbx/conformation_dependent_library/cdl_setup.py' adding 'mmtbx/conformation_dependent_library/cdl_svl_database.py' adding 'mmtbx/conformation_dependent_library/cdl_utils.py' adding 'mmtbx/conformation_dependent_library/check_cdl_database.py' adding 'mmtbx/conformation_dependent_library/density_dependent_restraints.py' adding 'mmtbx/conformation_dependent_library/enol_peptide_restraints.py' adding 'mmtbx/conformation_dependent_library/histidines.py' adding 'mmtbx/conformation_dependent_library/hpdl_database.py' adding 'mmtbx/conformation_dependent_library/hydrogen_bonding.py' adding 'mmtbx/conformation_dependent_library/investigate_rotamer_space.py' adding 'mmtbx/conformation_dependent_library/mcl.py' adding 'mmtbx/conformation_dependent_library/mcl_sf4_coordination.py' adding 'mmtbx/conformation_dependent_library/metal_coordination_library.py' adding 'mmtbx/conformation_dependent_library/multi_base_class.py' adding 'mmtbx/conformation_dependent_library/multi_residue_cdl_class.py' adding 'mmtbx/conformation_dependent_library/multi_residue_class.py' adding 'mmtbx/conformation_dependent_library/nucleotides.py' adding 'mmtbx/conformation_dependent_library/omega.py' adding 'mmtbx/conformation_dependent_library/omega_database.py' adding 'mmtbx/conformation_dependent_library/pH_dependent_restraints.py' adding 'mmtbx/conformation_dependent_library/rdl_database.py' adding 'mmtbx/conformation_dependent_library/rotamers.py' adding 'mmtbx/conformation_dependent_library/sf4_restraints.py' adding 'mmtbx/conformation_dependent_library/testing_utils.py' adding 'mmtbx/conformation_dependent_library/tst_cdl.py' adding 'mmtbx/conformation_dependent_library/tst_cdl_esd.py' adding 'mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py' adding 'mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py' adding 'mmtbx/conformation_dependent_library/tst_enol_peptide.py' adding 'mmtbx/conformation_dependent_library/tst_hpdl.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_01.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_02.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_03.py' adding 'mmtbx/conformation_dependent_library/tst_multi_residue_rna.py' adding 'mmtbx/conformation_dependent_library/tst_mutli_residue.py' adding 'mmtbx/conformation_dependent_library/tst_omega_cdl.py' adding 'mmtbx/conformation_dependent_library/tst_pH_mechanism.py' adding 'mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py' adding 'mmtbx/conformation_dependent_library/tst_rdl.py' adding 'mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py' adding 'mmtbx/conformation_dependent_library/utils.py' adding 'mmtbx/den/__init__.py' adding 'mmtbx/den/plot_weights.py' adding 'mmtbx/den/refinement.py' adding 'mmtbx/density_modification/__init__.py' adding 'mmtbx/density_modification/tst_density_modification.py' adding 'mmtbx/disorder/__init__.py' adding 'mmtbx/disorder/analyze_model.py' adding 'mmtbx/disorder/backbone.py' adding 'mmtbx/disorder/tst.py' adding 'mmtbx/disorder/tst_analyze_model.py' adding 'mmtbx/disorder/tst_backbone.py' adding 'mmtbx/dynamics/__init__.py' adding 'mmtbx/dynamics/cartesian_dynamics.py' adding 'mmtbx/dynamics/constants.py' adding 'mmtbx/dynamics/ensemble_cd.py' adding 'mmtbx/dynamics/simulated_annealing.py' adding 'mmtbx/dynamics/tst_cartesian_dynamics.py' adding 'mmtbx/dynamics/tst_sa.py' adding 'mmtbx/f_model/__init__.py' adding 'mmtbx/f_model/f_model.py' adding 'mmtbx/f_model/f_model_info.py' adding 'mmtbx/geometry/__init__.py' adding 'mmtbx/geometry/altloc.py' adding 'mmtbx/geometry/asa.py' adding 'mmtbx/geometry/clash.py' adding 'mmtbx/geometry/indexing.py' adding 'mmtbx/geometry/shared_types.py' adding 'mmtbx/geometry/sphere_surface_sampling.py' adding 'mmtbx/geometry/topology.py' adding 'mmtbx/geometry_restraints/__init__.py' adding 'mmtbx/geometry_restraints/afitt.py' adding 'mmtbx/geometry_restraints/base_qm_manager.py' adding 'mmtbx/geometry_restraints/c_beta.py' adding 'mmtbx/geometry_restraints/external.py' adding 'mmtbx/geometry_restraints/geo_file_parsing.py' adding 'mmtbx/geometry_restraints/mopac_manager.py' adding 'mmtbx/geometry_restraints/orca_manager.py' adding 'mmtbx/geometry_restraints/qi_utils.py' adding 'mmtbx/geometry_restraints/qm_manager.py' adding 'mmtbx/geometry_restraints/quantum_interface.py' adding 'mmtbx/geometry_restraints/quantum_restraints_manager.py' adding 'mmtbx/geometry_restraints/ramachandran.py' adding 'mmtbx/geometry_restraints/reference.py' adding 'mmtbx/geometry_restraints/tst_c_beta_restraints.py' adding 'mmtbx/geometry_restraints/tst_geo_file_parsing.py' adding 'mmtbx/geometry_restraints/tst_manager.py' adding 'mmtbx/geometry_restraints/tst_orca_manager.py' adding 'mmtbx/geometry_restraints/tst_ramachandran.py' adding 'mmtbx/geometry_restraints/tst_reference_coordinate.py' adding 'mmtbx/geometry_restraints/tst_reference_coordinate2.py' adding 'mmtbx/geometry_restraints/tst_replace_in_place.py' adding 'mmtbx/geometry_restraints/tst_xtb_manager.py' adding 'mmtbx/geometry_restraints/xtb_manager.py' adding 'mmtbx/geometry_restraints/torsion_restraints/__init__.py' adding 'mmtbx/geometry_restraints/torsion_restraints/reference_model.py' adding 'mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py' adding 'mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py' adding 'mmtbx/geometry_restraints/torsion_restraints/utils.py' adding 'mmtbx/hydrogens/__init__.py' adding 'mmtbx/hydrogens/build_hydrogens.py' adding 'mmtbx/hydrogens/connectivity.py' adding 'mmtbx/hydrogens/neutron_utils.py' adding 'mmtbx/hydrogens/parameterization.py' adding 'mmtbx/hydrogens/reduce_hydrogen.py' adding 'mmtbx/hydrogens/riding.py' adding 'mmtbx/hydrogens/specialised_hydrogen_atoms.py' adding 'mmtbx/hydrogens/tst.py' adding 'mmtbx/hydrogens/tst_add_hydrogen.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_1.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_10.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_11.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_12.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_13.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_14.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_15.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_16.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_2.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_3.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_4.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_5.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_6.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_7.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_8.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_9.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_time.py' adding 'mmtbx/hydrogens/tst_connectivity.py' adding 'mmtbx/hydrogens/tst_const_dihedral.py' adding 'mmtbx/hydrogens/tst_parameterization_1.py' adding 'mmtbx/hydrogens/tst_parameterization_2.py' adding 'mmtbx/hydrogens/tst_parameterization_3.py' adding 'mmtbx/hydrogens/tst_parameterization_4.py' adding 'mmtbx/hydrogens/tst_parameterization_5.py' adding 'mmtbx/hydrogens/tst_parameterization_6.py' adding 'mmtbx/hydrogens/tst_parameterization_7.py' adding 'mmtbx/hydrogens/tst_parameterization_8.py' adding 'mmtbx/hydrogens/tst_parameterization_9.py' adding 'mmtbx/hydrogens/tst_riding_coefficients.py' adding 'mmtbx/hydrogens/tst_riding_fd_1.py' adding 'mmtbx/hydrogens/tst_riding_fd_2.py' adding 'mmtbx/hydrogens/tst_riding_fd_3.py' adding 'mmtbx/hydrogens/tst_riding_fd_4.py' adding 'mmtbx/hydrogens/tst_riding_fd_5.py' adding 'mmtbx/hydrogens/tst_riding_manager.py' adding 'mmtbx/hydrogens/tst_riding_minimize.py' adding 'mmtbx/hydrogens/tst_validate_H.py' adding 'mmtbx/hydrogens/validate_H.py' adding 'mmtbx/ias/__init__.py' adding 'mmtbx/ias/tst_ias.py' adding 'mmtbx/idealized_aa_residues/__init__.py' adding 'mmtbx/idealized_aa_residues/all_his.py' adding 'mmtbx/idealized_aa_residues/rotamer_manager.py' adding 'mmtbx/idealized_aa_residues/sample_rotamers.py' adding 'mmtbx/idealized_aa_residues/tst.py' adding 'mmtbx/ions/__init__.py' adding 'mmtbx/ions/build.py' adding 'mmtbx/ions/environment.py' adding 'mmtbx/ions/geometry.py' adding 'mmtbx/ions/halides.py' adding 'mmtbx/ions/identify.py' adding 'mmtbx/ions/tst_environment.py' adding 'mmtbx/ions/tst_geometries.py' adding 'mmtbx/ions/tst_parameters.py' adding 'mmtbx/ions/tst_pick_approx_zn.py' adding 'mmtbx/ions/tst_pick_ca.py' adding 'mmtbx/ions/tst_pick_ca_svm.py' adding 'mmtbx/ions/tst_pick_k.py' adding 'mmtbx/ions/tst_pick_mg.py' adding 'mmtbx/ions/tst_pickle.py' adding 'mmtbx/ions/tst_symmetry_axis.py' adding 'mmtbx/ions/tst_utils.py' adding 'mmtbx/ions/tst_validate_ca.py' adding 'mmtbx/ions/tst_validate_mg.py' adding 'mmtbx/ions/utils.py' adding 'mmtbx/ions/svm/__init__.py' adding 'mmtbx/ions/svm/dump_sites.py' adding 'mmtbx/ions/svm/tst_classifier_01.py' adding 'mmtbx/ions/svm/tst_classifier_02.py' adding 'mmtbx/ions/svm/utils.py' adding 'mmtbx/kinemage/__init__.py' adding 'mmtbx/kinemage/nrubs.py' adding 'mmtbx/kinemage/ribbon_rendering.py' adding 'mmtbx/kinemage/ribbons.py' adding 'mmtbx/kinemage/tst_validation.py' adding 'mmtbx/kinemage/validation.py' adding 'mmtbx/ligands/__init__.py' adding 'mmtbx/ligands/chemistry.py' adding 'mmtbx/ligands/electrons.py' adding 'mmtbx/ligands/hierarchy_utils.py' adding 'mmtbx/ligands/rdkit_utils.py' adding 'mmtbx/ligands/ready_set_basics.py' adding 'mmtbx/ligands/ready_set_utils.py' adding 'mmtbx/ligands/tst_electron_scripting.py' adding 'mmtbx/ligands/tst_ready_set_utils.py' adding 'mmtbx/ligands/tst_xtal_screens.py' adding 'mmtbx/ligands/xtal_screens.py' adding 'mmtbx/maps/__init__.py' adding 'mmtbx/maps/composite_omit_map.py' adding 'mmtbx/maps/correlation.py' adding 'mmtbx/maps/fem.py' adding 'mmtbx/maps/fobs_minus_fobs_map.py' adding 'mmtbx/maps/kick.py' adding 'mmtbx/maps/map_model_cc.py' adding 'mmtbx/maps/mtriage.py' adding 'mmtbx/maps/polder.py' adding 'mmtbx/maps/superpose.py' adding 'mmtbx/maps/tst_composite_omit_map.py' adding 'mmtbx/maps/tst_composite_omit_map_2.py' adding 'mmtbx/maps/tst_composite_omit_map_3.py' adding 'mmtbx/maps/tst_correlation.py' adding 'mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py' adding 'mmtbx/maps/utils.py' adding 'mmtbx/maps/xtrapol8.py' adding 'mmtbx/masks/__init__.py' adding 'mmtbx/masks/tst_asu_mask.py' adding 'mmtbx/masks/tst_masks.py' adding 'mmtbx/max_lik/__init__.py' adding 'mmtbx/max_lik/max_like_non_uniform.py' adding 'mmtbx/max_lik/maxlik.py' adding 'mmtbx/max_lik/tst_max_lik.py' adding 'mmtbx/max_lik/tst_maxlik.py' adding 'mmtbx/model/__init__.py' adding 'mmtbx/model/model.py' adding 'mmtbx/model/restraints.py' adding 'mmtbx/model/statistics.py' adding 'mmtbx/model/utils.py' adding 'mmtbx/monomer_library/__init__.py' adding 'mmtbx/monomer_library/bondlength_defaults.py' adding 'mmtbx/monomer_library/cif_triage.py' adding 'mmtbx/monomer_library/cif_types.py' adding 'mmtbx/monomer_library/conformation_dependent_restraints.py' adding 'mmtbx/monomer_library/conv_v2_v3.py' adding 'mmtbx/monomer_library/correct_hydrogen_geometries.py' adding 'mmtbx/monomer_library/geostd_utils.py' adding 'mmtbx/monomer_library/glyco_chiral_values.py' adding 'mmtbx/monomer_library/glyco_utils.py' adding 'mmtbx/monomer_library/hydrogen_restrictions.py' adding 'mmtbx/monomer_library/idealized_aa.py' adding 'mmtbx/monomer_library/linking_mixins.py' adding 'mmtbx/monomer_library/linking_setup.py' adding 'mmtbx/monomer_library/linking_utils.py' adding 'mmtbx/monomer_library/mmtbx_utils.py' adding 'mmtbx/monomer_library/pdb_interpretation.py' adding 'mmtbx/monomer_library/populate_auto_linking_origin_ids.py' adding 'mmtbx/monomer_library/rna_sugar_pucker_analysis.py' adding 'mmtbx/monomer_library/rotamer_utils.py' adding 'mmtbx/monomer_library/server.py' adding 'mmtbx/monomer_library/tst_all_cif_files.py' adding 'mmtbx/monomer_library/tst_carbo_linking.py' adding 'mmtbx/monomer_library/tst_chg.py' adding 'mmtbx/monomer_library/tst_cif_triage.py' adding 'mmtbx/monomer_library/tst_cif_types.py' adding 'mmtbx/monomer_library/tst_correct_hydrogens.py' adding 'mmtbx/monomer_library/tst_deuterium_terminii.py' adding 'mmtbx/monomer_library/tst_geo_reduce_for_tardy.py' adding 'mmtbx/monomer_library/tst_glyco_coordination.py' adding 'mmtbx/monomer_library/tst_glyco_hand.py' adding 'mmtbx/monomer_library/tst_idealized_aa.py' adding 'mmtbx/monomer_library/tst_iron_sulfur_clusters.py' adding 'mmtbx/monomer_library/tst_linking.py' adding 'mmtbx/monomer_library/tst_metal_coordination.py' adding 'mmtbx/monomer_library/tst_motif.py' adding 'mmtbx/monomer_library/tst_neutron_distance.py' adding 'mmtbx/monomer_library/tst_paral_geo.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_2.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_3.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_4.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_5.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py' adding 'mmtbx/monomer_library/tst_protein_interpretation.py' adding 'mmtbx/monomer_library/tst_rna_dna_interpretation.py' adding 'mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py' adding 'mmtbx/monomer_library/tst_rotamer_utils.py' adding 'mmtbx/monomer_library/tst_selection.py' adding 'mmtbx/monomer_library/tst_server.py' adding 'mmtbx/monomer_library/tst_superpose_ideal.py' adding 'mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py' adding 'mmtbx/monomer_library/tst_user_supplied_library.py' adding 'mmtbx/nci/__init__.py' adding 'mmtbx/nci/data_filtering.py' adding 'mmtbx/nci/hbond.py' adding 'mmtbx/nci/skew_kurt_plot.py' adding 'mmtbx/nci/tst_hbond.py' adding 'mmtbx/ncs/__init__.py' adding 'mmtbx/ncs/cartesian_restraints.py' adding 'mmtbx/ncs/ligands.py' adding 'mmtbx/ncs/ncs.py' adding 'mmtbx/ncs/ncs_params.py' adding 'mmtbx/ncs/ncs_restraints_group_list.py' adding 'mmtbx/ncs/ncs_search.py' adding 'mmtbx/ncs/ncs_utils.py' adding 'mmtbx/ncs/tncs.py' adding 'mmtbx/pair_interaction/__init__.py' adding 'mmtbx/pair_interaction/pair_interaction.py' adding 'mmtbx/pair_interaction/tst_00.py' adding 'mmtbx/pair_interaction/tst_01.py' adding 'mmtbx/pair_interaction/tst_02.py' adding 'mmtbx/pair_interaction/tst_03.py' adding 'mmtbx/pair_interaction/tst_04.py' adding 'mmtbx/pair_interaction/tst_05.py' adding 'mmtbx/polygon/__init__.py' adding 'mmtbx/polygon/output.py' adding 'mmtbx/polygon/tst.py' adding 'mmtbx/polygon/tst_gui.py' adding 'mmtbx/polygon/tst_polygon_data.py' adding 'mmtbx/probe/AtomTypes.py' adding 'mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py' adding 'mmtbx/probe/Helpers.py' adding 'mmtbx/probe/__init__.py' adding 'mmtbx/probe/tst_mmtbx_probe_ext.py' adding 'mmtbx/programs/__init__.py' adding 'mmtbx/programs/arginine_geometry.py' adding 'mmtbx/programs/atom_selection.py' adding 'mmtbx/programs/atom_valence_simple.py' adding 'mmtbx/programs/barbed_wire_analysis.py' adding 'mmtbx/programs/cablam.py' adding 'mmtbx/programs/cablam_idealization.py' adding 'mmtbx/programs/cbetadev.py' adding 'mmtbx/programs/chiral_validation.py' adding 'mmtbx/programs/clashscore.py' adding 'mmtbx/programs/clashscore2.py' adding 'mmtbx/programs/comparama.py' adding 'mmtbx/programs/debug_riding.py' adding 'mmtbx/programs/elbow_services.py' adding 'mmtbx/programs/emringer.py' adding 'mmtbx/programs/fetch.py' adding 'mmtbx/programs/fmodel.py' adding 'mmtbx/programs/hbond.py' adding 'mmtbx/programs/holton_geometry_validation.py' adding 'mmtbx/programs/hydrogenate.py' adding 'mmtbx/programs/ligand_restraints_validation.py' adding 'mmtbx/programs/mask.py' adding 'mmtbx/programs/matthews.py' adding 'mmtbx/programs/model_vs_sequence.py' adding 'mmtbx/programs/mp_validate_bonds.py' adding 'mmtbx/programs/next_gen_atom_typing.py' adding 'mmtbx/programs/next_gen_residue_typing.py' adding 'mmtbx/programs/nonbonded_overlaps.py' adding 'mmtbx/programs/omegalyze.py' adding 'mmtbx/programs/pdb_as_cif.py' adding 'mmtbx/programs/pdbtools.py' adding 'mmtbx/programs/polder.py' adding 'mmtbx/programs/prepare_pdb_deposition.py' adding 'mmtbx/programs/probe2.py' adding 'mmtbx/programs/probescore_ligand.py' adding 'mmtbx/programs/process_predicted_model.py' adding 'mmtbx/programs/quantum_interface.py' adding 'mmtbx/programs/rama_z.py' adding 'mmtbx/programs/ramalyze.py' adding 'mmtbx/programs/real_space_correlation.py' adding 'mmtbx/programs/reduce2.py' adding 'mmtbx/programs/reduce_cryoem_resolution.py' adding 'mmtbx/programs/ribbons.py' adding 'mmtbx/programs/rna_validate.py' adding 'mmtbx/programs/rna_validate_bonds.py' adding 'mmtbx/programs/rna_validate_puckers.py' adding 'mmtbx/programs/rna_validate_suites.py' adding 'mmtbx/programs/rotalyze.py' adding 'mmtbx/programs/ss_idealization.py' adding 'mmtbx/programs/ss_validation.py' adding 'mmtbx/programs/suitename.py' adding 'mmtbx/programs/suitename_old.py' adding 'mmtbx/programs/taam_minus_iam.py' adding 'mmtbx/programs/undowser.py' adding 'mmtbx/programs/undowser2.py' adding 'mmtbx/programs/validate_ligands.py' adding 'mmtbx/programs/water_b_factors.py' adding 'mmtbx/programs/xtrapol8.py' adding 'mmtbx/real_space/__init__.py' adding 'mmtbx/real_space/tst.py' adding 'mmtbx/reduce/InteractionGraph.py' adding 'mmtbx/reduce/Movers.py' adding 'mmtbx/reduce/Optimizers.py' adding 'mmtbx/reduce/__init__.py' adding 'mmtbx/reduce/tst_mmtbx_reduce_ext.py' adding 'mmtbx/refinement/__init__.py' adding 'mmtbx/refinement/adp_refinement.py' adding 'mmtbx/refinement/anomalous_scatterer_groups.py' adding 'mmtbx/refinement/calculators.py' adding 'mmtbx/refinement/data.py' adding 'mmtbx/refinement/energy_monitor.py' adding 'mmtbx/refinement/flip_peptide_side_chain.py' adding 'mmtbx/refinement/geometry_minimization.py' adding 'mmtbx/refinement/group.py' adding 'mmtbx/refinement/inspect_tardy_trajectory.py' adding 'mmtbx/refinement/minimization.py' adding 'mmtbx/refinement/minimization_monitor.py' adding 'mmtbx/refinement/minimization_ncs_constraints.py' adding 'mmtbx/refinement/occupancies.py' adding 'mmtbx/refinement/orca.py' adding 'mmtbx/refinement/print_statistics.py' adding 'mmtbx/refinement/refinement_flags.py' adding 'mmtbx/refinement/restraints.py' adding 'mmtbx/refinement/rigid_body.py' adding 'mmtbx/refinement/select_best_starting_model.py' adding 'mmtbx/refinement/tardy.py' adding 'mmtbx/refinement/targets.py' adding 'mmtbx/refinement/tst_anomalous_scatterer_groups.py' adding 'mmtbx/refinement/tst_fit_rotamers.py' adding 'mmtbx/refinement/tst_group.py' adding 'mmtbx/refinement/tst_group_2.py' adding 'mmtbx/refinement/tst_misc.py' adding 'mmtbx/refinement/tst_occupancy_selections.py' adding 'mmtbx/refinement/tst_real_space_simple.py' adding 'mmtbx/refinement/tst_refinement_flags.py' adding 'mmtbx/refinement/tst_rigid_body.py' adding 'mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py' adding 'mmtbx/refinement/tst_select_best_starting_model.py' adding 'mmtbx/refinement/utils.py' adding 'mmtbx/refinement/weights.py' adding 'mmtbx/refinement/weights_params.py' adding 'mmtbx/refinement/wrappers.py' adding 'mmtbx/refinement/ensemble_refinement/__init__.py' adding 'mmtbx/refinement/ensemble_refinement/ensemble_probability.py' adding 'mmtbx/refinement/ensemble_refinement/ensemble_utils.py' adding 'mmtbx/refinement/real_space/__init__.py' adding 'mmtbx/refinement/real_space/adp.py' adding 'mmtbx/refinement/real_space/explode_and_refine.py' adding 'mmtbx/refinement/real_space/fit_his.py' adding 'mmtbx/refinement/real_space/fit_residue.py' adding 'mmtbx/refinement/real_space/fit_residues.py' adding 'mmtbx/refinement/real_space/fit_small_molecule.py' adding 'mmtbx/refinement/real_space/fit_water.py' adding 'mmtbx/refinement/real_space/individual_sites.py' adding 'mmtbx/refinement/real_space/occupancy.py' adding 'mmtbx/refinement/real_space/rigid_body.py' adding 'mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_0.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_0H.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_1.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_1H.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_2.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_3.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_4.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_5.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_6.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_7.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_1.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_1H.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_2.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_3.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_4.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_5.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_6.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_selection.py' adding 'mmtbx/refinement/real_space/tst_fit_water.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_1.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_2.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_3.py' adding 'mmtbx/refinement/real_space/tst_monitor.py' adding 'mmtbx/refinement/real_space/tst_rigid_body.py' adding 'mmtbx/refinement/real_space/tst_weight.py' adding 'mmtbx/refinement/real_space/utils.py' adding 'mmtbx/refinement/real_space/weight.py' adding 'mmtbx/regression/__init__.py' adding 'mmtbx/regression/make_fake_anomalous_data.py' adding 'mmtbx/regression/tst_add_arrows_on_plot.py' adding 'mmtbx/regression/tst_add_h_to_water.py' adding 'mmtbx/regression/tst_adp_restraints.py' adding 'mmtbx/regression/tst_alignment.py' adding 'mmtbx/regression/tst_altloc_chain_break.py' adding 'mmtbx/regression/tst_altloc_remediate.py' adding 'mmtbx/regression/tst_angle.py' adding 'mmtbx/regression/tst_anomalous_substructure.py' adding 'mmtbx/regression/tst_apply_cif_restraints.py' adding 'mmtbx/regression/tst_arginine_geometry.py' adding 'mmtbx/regression/tst_cc_star.py' adding 'mmtbx/regression/tst_chain_comparison.py' adding 'mmtbx/regression/tst_chain_comparison_cif.py' adding 'mmtbx/regression/tst_cif_as_mtz_wavelengths.py' adding 'mmtbx/regression/tst_cis_trans_peptide_link.py' adding 'mmtbx/regression/tst_clashes.py' adding 'mmtbx/regression/tst_command_line_input.py' adding 'mmtbx/regression/tst_domains_from_pae.py' adding 'mmtbx/regression/tst_domains_from_pae_cif.py' adding 'mmtbx/regression/tst_dynamics_cli.py' adding 'mmtbx/regression/tst_examples.py' adding 'mmtbx/regression/tst_find_ncs.py' adding 'mmtbx/regression/tst_find_ss_structure.py' adding 'mmtbx/regression/tst_find_ss_structure_cif.py' adding 'mmtbx/regression/tst_flipping_his.py' adding 'mmtbx/regression/tst_fmodel.py' adding 'mmtbx/regression/tst_fmodel_2.py' adding 'mmtbx/regression/tst_fmodel_and_dm.py' adding 'mmtbx/regression/tst_fmodel_fd.py' adding 'mmtbx/regression/tst_fmodel_misc.py' adding 'mmtbx/regression/tst_fmodel_no_cryst1.py' adding 'mmtbx/regression/tst_geo_min_restraints_phil.py' adding 'mmtbx/regression/tst_geometry_minimization.py' adding 'mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py' adding 'mmtbx/regression/tst_holton_geometry_validation.py' adding 'mmtbx/regression/tst_isomorphous_difference_misc.py' adding 'mmtbx/regression/tst_ligand_interactions.py' adding 'mmtbx/regression/tst_ligand_ncs.py' adding 'mmtbx/regression/tst_loop_closure.py' adding 'mmtbx/regression/tst_lrv.py' adding 'mmtbx/regression/tst_map_model_cc.py' adding 'mmtbx/regression/tst_map_type_parser.py' adding 'mmtbx/regression/tst_maps_misc.py' adding 'mmtbx/regression/tst_metal_link_1.py' adding 'mmtbx/regression/tst_minimize_chain.py' adding 'mmtbx/regression/tst_ml_estimate.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py' adding 'mmtbx/regression/tst_model_map.py' adding 'mmtbx/regression/tst_model_vs_map.py' adding 'mmtbx/regression/tst_model_vs_sequence.py' adding 'mmtbx/regression/tst_models_to_from_chains.py' adding 'mmtbx/regression/tst_msa.py' adding 'mmtbx/regression/tst_mtz2map.py' adding 'mmtbx/regression/tst_multi_residue_class.py' adding 'mmtbx/regression/tst_ordered_solvent.py' adding 'mmtbx/regression/tst_origin_ids.py' adding 'mmtbx/regression/tst_pdbtools.py' adding 'mmtbx/regression/tst_polder.py' adding 'mmtbx/regression/tst_polder_1.py' adding 'mmtbx/regression/tst_polder_2.py' adding 'mmtbx/regression/tst_polder_3.py' adding 'mmtbx/regression/tst_polder_4.py' adding 'mmtbx/regression/tst_polder_box.py' adding 'mmtbx/regression/tst_polder_ccs.py' adding 'mmtbx/regression/tst_probe.py' adding 'mmtbx/regression/tst_process_predicted_model.py' adding 'mmtbx/regression/tst_process_predicted_model_cif.py' adding 'mmtbx/regression/tst_prune_model.py' adding 'mmtbx/regression/tst_psi_phi_extraction.py' adding 'mmtbx/regression/tst_rank_scale_map.py' adding 'mmtbx/regression/tst_rdkit_utils_fragmentation.py' adding 'mmtbx/regression/tst_rdkit_utils_molecule.py' adding 'mmtbx/regression/tst_real_space_correlation.py' adding 'mmtbx/regression/tst_reduce.py' adding 'mmtbx/regression/tst_reduce2_no_symmetry.py' adding 'mmtbx/regression/tst_reduce_cryoem_resolution.py' adding 'mmtbx/regression/tst_reduce_custom_bond.py' adding 'mmtbx/regression/tst_reduce_switch.py' adding 'mmtbx/regression/tst_reduce_timeout.py' adding 'mmtbx/regression/tst_refine_anomalous_substructure.py' adding 'mmtbx/regression/tst_regularize_from_pdb.py' adding 'mmtbx/regression/tst_regularize_from_pdb_cif.py' adding 'mmtbx/regression/tst_ribbons.py' adding 'mmtbx/regression/tst_rigid_bond_test.py' adding 'mmtbx/regression/tst_ringer.py' adding 'mmtbx/regression/tst_sampled_model_density.py' adding 'mmtbx/regression/tst_scattering_table.py' adding 'mmtbx/regression/tst_scattering_type_registry.py' adding 'mmtbx/regression/tst_schrodinger_interface.py' adding 'mmtbx/regression/tst_sequence_validation.py' adding 'mmtbx/regression/tst_sort_hetatms.py' adding 'mmtbx/regression/tst_special_term_at_end.py' adding 'mmtbx/regression/tst_ss_validation_long_chainids.py' adding 'mmtbx/regression/tst_statistics_output.py' adding 'mmtbx/regression/tst_superpose.py' adding 'mmtbx/regression/tst_table_one.py' adding 'mmtbx/regression/tst_utils.py' adding 'mmtbx/regression/tst_validate_ligands.py' adding 'mmtbx/regression/tst_validate_ligands_2.py' adding 'mmtbx/regression/tst_validate_ligands_3.py' adding 'mmtbx/regression/tst_validate_ligands_4.py' adding 'mmtbx/regression/tst_validation_summary.py' adding 'mmtbx/regression/model/__init__.py' adding 'mmtbx/regression/model/tst_model.py' adding 'mmtbx/regression/model/tst_model_2.py' adding 'mmtbx/regression/model/tst_model_biomt_mtrix.py' adding 'mmtbx/regression/model/tst_model_biomt_mtrix_2.py' adding 'mmtbx/regression/model/tst_model_cart_ref_restraints.py' adding 'mmtbx/regression/model/tst_model_dedeuterate.py' adding 'mmtbx/regression/model/tst_model_get_vdw_radii.py' adding 'mmtbx/regression/model/tst_model_merge.py' adding 'mmtbx/regression/model/tst_model_mtrix.py' adding 'mmtbx/regression/model/tst_model_ncs.py' adding 'mmtbx/regression/model/tst_model_neutralize_scatterers.py' adding 'mmtbx/regression/model/tst_model_pairs_within.py' adding 'mmtbx/regression/model/tst_model_ramachandran.py' adding 'mmtbx/regression/model/tst_model_remove_alternative_conformations.py' adding 'mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py' adding 'mmtbx/regression/model/tst_model_symmetry.py' adding 'mmtbx/regression/model/tst_model_tors_ref_restraints.py' adding 'mmtbx/regression/model/tst_model_utils_merge_models.py' adding 'mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py' adding 'mmtbx/regression/ncs/__init__.py' adding 'mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py' adding 'mmtbx/regression/ncs/tst_ncs_restraints_group_list.py' adding 'mmtbx/regression/ncs/tst_ncs_search.py' adding 'mmtbx/regression/ncs/tst_ncs_search_flips.py' adding 'mmtbx/regression/ncs/tst_ncs_utils.py' adding 'mmtbx/regression/ncs/tst_restraints.py' adding 'mmtbx/regression/tls/__init__.py' adding 'mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py' adding 'mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py' adding 'mmtbx/regression/tls/tst_get_t_scheme.py' adding 'mmtbx/regression/tls/tst_tls.py' adding 'mmtbx/regression/tls/tst_tls_analysis.py' adding 'mmtbx/regression/tls/tst_tls_as_xyz.py' adding 'mmtbx/regression/tls/tst_tls_optimise_amplitudes.py' adding 'mmtbx/regression/tls/tst_tls_refinement_fft.py' adding 'mmtbx/regression/tls/tst_tls_utils.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py' adding 'mmtbx/ringer/__init__.py' adding 'mmtbx/ringer/em_rolling.py' adding 'mmtbx/ringer/em_rscc.py' adding 'mmtbx/ringer/em_scoring.py' adding 'mmtbx/ringer/emringer.py' adding 'mmtbx/ringer/tst_em_rscc.py' adding 'mmtbx/ringer/tst_emringer.py' adding 'mmtbx/rotamer/__init__.py' adding 'mmtbx/rotamer/graphics.py' adding 'mmtbx/rotamer/n_dim_table.py' adding 'mmtbx/rotamer/nqh.py' adding 'mmtbx/rotamer/ramachandran_eval.py' adding 'mmtbx/rotamer/ramachandran_eval_deprecated.py' adding 'mmtbx/rotamer/rotamer_eval.py' adding 'mmtbx/rotamer/sidechain_angles.py' adding 'mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py' adding 'mmtbx/rotamer/tst_rotamer_eval.py' adding 'mmtbx/rsr/__init__.py' adding 'mmtbx/rsr/tst.py' adding 'mmtbx/scaling/__init__.py' adding 'mmtbx/scaling/absence_likelihood.py' adding 'mmtbx/scaling/absences.py' adding 'mmtbx/scaling/absolute_scaling.py' adding 'mmtbx/scaling/basic_analyses.py' adding 'mmtbx/scaling/bayesian_estimator.py' adding 'mmtbx/scaling/data_statistics.py' adding 'mmtbx/scaling/fa_estimation.py' adding 'mmtbx/scaling/make_param.py' adding 'mmtbx/scaling/massage_twin_detwin_data.py' adding 'mmtbx/scaling/matthews.py' adding 'mmtbx/scaling/mean_f_rms_f.py' adding 'mmtbx/scaling/outlier_plots.py' adding 'mmtbx/scaling/outlier_rejection.py' adding 'mmtbx/scaling/pair_analyses.py' adding 'mmtbx/scaling/plan_sad_experiment.py' adding 'mmtbx/scaling/pre_scale.py' adding 'mmtbx/scaling/random_omit.py' adding 'mmtbx/scaling/relative_scaling.py' adding 'mmtbx/scaling/relative_wilson.py' adding 'mmtbx/scaling/remove_outliers.py' adding 'mmtbx/scaling/sigmaa_estimation.py' adding 'mmtbx/scaling/ta_alpha_beta_calc.py' adding 'mmtbx/scaling/thorough_outlier_test.py' adding 'mmtbx/scaling/tst_absences.py' adding 'mmtbx/scaling/tst_bayesian_estimator.py' adding 'mmtbx/scaling/tst_massage_data.py' adding 'mmtbx/scaling/tst_mean_f_rms_f.py' adding 'mmtbx/scaling/tst_outlier.py' adding 'mmtbx/scaling/tst_plan_sad_experiment.py' adding 'mmtbx/scaling/tst_scaling.py' adding 'mmtbx/scaling/tst_sigmaa.py' adding 'mmtbx/scaling/tst_xtriage.py' adding 'mmtbx/scaling/tst_xtriage_twin_analyses.py' adding 'mmtbx/scaling/twin_analyses.py' adding 'mmtbx/scaling/twmad_scale.py' adding 'mmtbx/scaling/xtriage.py' adding 'mmtbx/secondary_structure/__init__.py' adding 'mmtbx/secondary_structure/find_ss_from_ca.py' adding 'mmtbx/secondary_structure/nucleic_acids.py' adding 'mmtbx/secondary_structure/proteins.py' adding 'mmtbx/secondary_structure/regularize_from_pdb.py' adding 'mmtbx/secondary_structure/secondary_structure_params.py' adding 'mmtbx/secondary_structure/ss_validation.py' adding 'mmtbx/secondary_structure/tst.py' adding 'mmtbx/secondary_structure/tst_insertion_codes.py' adding 'mmtbx/secondary_structure/tst_segid.py' adding 'mmtbx/secondary_structure/utils.py' adding 'mmtbx/secondary_structure/build/__init__.py' adding 'mmtbx/secondary_structure/build/ss_idealization.py' adding 'mmtbx/secondary_structure/build/tst_1.py' adding 'mmtbx/secondary_structure/build/tst_2.py' adding 'mmtbx/secondary_structure/build/tst_3.py' adding 'mmtbx/secondary_structure/build/tst_io.py' adding 'mmtbx/secondary_structure/build/tst_ss_id_ncs.py' adding 'mmtbx/sisa/__init__.py' adding 'mmtbx/sisa/optimize/__init__.py' adding 'mmtbx/sisa/optimize/mod_ga.py' adding 'mmtbx/sisa/optimize/mod_input.py' adding 'mmtbx/sisa/optimize/mod_masks.py' adding 'mmtbx/sisa/optimize/mod_mtz.py' adding 'mmtbx/sisa/optimize/mod_optimize.py' adding 'mmtbx/sisa/optimize/mod_util.py' adding 'mmtbx/solvent/__init__.py' adding 'mmtbx/solvent/ensemble_ordered_solvent.py' adding 'mmtbx/solvent/map_to_water.py' adding 'mmtbx/solvent/ordered_solvent.py' adding 'mmtbx/suitename/__init__.py' adding 'mmtbx/suitename/diangle.py' adding 'mmtbx/suitename/dualparse.py' adding 'mmtbx/suitename/mainchain.py' adding 'mmtbx/suitename/suitealyze.py' adding 'mmtbx/suitename/suitename.py' adding 'mmtbx/suitename/suitenamedefs.py' adding 'mmtbx/suitename/suiteninit.py' adding 'mmtbx/suitename/suiteninput.py' adding 'mmtbx/suitename/suitenout.py' adding 'mmtbx/suitename/suites.py' adding 'mmtbx/suitename/transdent.py' adding 'mmtbx/tls/__init__.py' adding 'mmtbx/tls/analysis.py' adding 'mmtbx/tls/command_line.py' adding 'mmtbx/tls/decompose.py' adding 'mmtbx/tls/ladp.py' adding 'mmtbx/tls/optimise_amplitudes.py' adding 'mmtbx/tls/perm10.py' adding 'mmtbx/tls/perm11.py' adding 'mmtbx/tls/perm12.py' adding 'mmtbx/tls/perm13.py' adding 'mmtbx/tls/perm14.py' adding 'mmtbx/tls/perm15.py' adding 'mmtbx/tls/tls_as_xyz.py' adding 'mmtbx/tls/tools.py' adding 'mmtbx/tls/utils.py' adding 'mmtbx/twinning/__init__.py' adding 'mmtbx/twinning/probabalistic_detwinning.py' adding 'mmtbx/twinning/twin_f_model.py' adding 'mmtbx/utils/__init__.py' adding 'mmtbx/utils/fab_elbow_angle.py' adding 'mmtbx/utils/grid2d.py' adding 'mmtbx/utils/ntc.py' adding 'mmtbx/utils/rotatable_bonds.py' adding 'mmtbx/utils/tst_switch_rotamers.py' adding 'mmtbx/validation/__init__.py' adding 'mmtbx/validation/analyze_peptides.py' adding 'mmtbx/validation/barbed_wire_analysis.py' adding 'mmtbx/validation/cablam.py' adding 'mmtbx/validation/cbd_utils.py' adding 'mmtbx/validation/cbetadev.py' adding 'mmtbx/validation/chain_comparison.py' adding 'mmtbx/validation/clashscore.py' adding 'mmtbx/validation/clashscore2.py' adding 'mmtbx/validation/comparama.py' adding 'mmtbx/validation/comprehensive_residue.py' adding 'mmtbx/validation/convert_lists.py' adding 'mmtbx/validation/datasets.py' adding 'mmtbx/validation/ensembles.py' adding 'mmtbx/validation/experimental.py' adding 'mmtbx/validation/fav_lists.py' adding 'mmtbx/validation/graphics.py' adding 'mmtbx/validation/holton_geometry_validation.py' adding 'mmtbx/validation/ligand_interactions.py' adding 'mmtbx/validation/ligands.py' adding 'mmtbx/validation/mean_devs_PRO_phi_psi.py' adding 'mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py' adding 'mmtbx/validation/mean_devs_others_phi_psi.py' adding 'mmtbx/validation/model_properties.py' adding 'mmtbx/validation/mp_validate_bonds.py' adding 'mmtbx/validation/omegalyze.py' adding 'mmtbx/validation/phi_psi_2_data.py' adding 'mmtbx/validation/rama_z.py' adding 'mmtbx/validation/ramalyze.py' adding 'mmtbx/validation/restraints.py' adding 'mmtbx/validation/rna_validate.py' adding 'mmtbx/validation/rotalyze.py' adding 'mmtbx/validation/sequence.py' adding 'mmtbx/validation/undowser.py' adding 'mmtbx/validation/undowser2.py' adding 'mmtbx/validation/utils.py' adding 'mmtbx/validation/validate_ligands.py' adding 'mmtbx/validation/waters.py' adding 'mmtbx/validation/molprobity/__init__.py' adding 'mmtbx/validation/molprobity/kinemage_templates.py' adding 'mmtbx/validation/molprobity/mp_geo.py' adding 'mmtbx/validation/molprobity/percentile_clashscore.py' adding 'mmtbx/validation/molprobity/percentile_mpscore.py' adding 'mmtbx/validation/molprobity/probescore_ligand.py' adding 'mmtbx/validation/molprobity/table_from_json.py' adding 'mmtbx/validation/ramachandran/__init__.py' adding 'mmtbx/validation/ramachandran/convert_from_text.py' adding 'mmtbx/validation/regression/__init__.py' adding 'mmtbx/validation/regression/run_restraints.py' adding 'mmtbx/validation/regression/tst_barbed_wire_analysis.py' adding 'mmtbx/validation/regression/tst_cablam.py' adding 'mmtbx/validation/regression/tst_cablam_2.py' adding 'mmtbx/validation/regression/tst_cbetadev.py' adding 'mmtbx/validation/regression/tst_cbetadev_02.py' adding 'mmtbx/validation/regression/tst_chiral_validation.py' adding 'mmtbx/validation/regression/tst_clashscore.py' adding 'mmtbx/validation/regression/tst_clashscore_2.py' adding 'mmtbx/validation/regression/tst_do_flips_clashscore.py' adding 'mmtbx/validation/regression/tst_experimental.py' adding 'mmtbx/validation/regression/tst_find_region_max_value.py' adding 'mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py' adding 'mmtbx/validation/regression/tst_keep_hydrogens.py' adding 'mmtbx/validation/regression/tst_model_properties.py' adding 'mmtbx/validation/regression/tst_molprobity_1.py' adding 'mmtbx/validation/regression/tst_molprobity_2.py' adding 'mmtbx/validation/regression/tst_molprobity_3.py' adding 'mmtbx/validation/regression/tst_molprobity_4.py' adding 'mmtbx/validation/regression/tst_molprobity_5.py' adding 'mmtbx/validation/regression/tst_molprobity_arguments.py' adding 'mmtbx/validation/regression/tst_mp_geo.py' adding 'mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py' adding 'mmtbx/validation/regression/tst_mp_geo_endtoend.py' adding 'mmtbx/validation/regression/tst_mp_validate_bonds.py' adding 'mmtbx/validation/regression/tst_omegalyze.py' adding 'mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py' adding 'mmtbx/validation/regression/tst_rama_z_01.py' adding 'mmtbx/validation/regression/tst_rama_z_02.py' adding 'mmtbx/validation/regression/tst_ramalyze.py' adding 'mmtbx/validation/regression/tst_ramalyze2.py' adding 'mmtbx/validation/regression/tst_ramalyze_rare.py' adding 'mmtbx/validation/regression/tst_restraints.py' adding 'mmtbx/validation/regression/tst_rna_validate.py' adding 'mmtbx/validation/regression/tst_rotalyze.py' adding 'mmtbx/validation/regression/tst_suitename.py' adding 'mmtbx/validation/regression/tst_symmetry_SS.py' adding 'mmtbx/validation/regression/tst_undowser.py' adding 'mmtbx/validation/regression/tst_undowser2.py' adding 'mmtbx/validation/regression/tst_utils.py' adding 'mmtbx/validation/regression/tst_waters.py' adding 'mmtbx/wwpdb/__init__.py' adding 'mmtbx/wwpdb/rcsb_entry_request.py' adding 'mmtbx/wwpdb/rcsb_web_services.py' adding 'mmtbx/wwpdb/tst_rcsb_entry_request.py' adding 'mmtbx/wwpdb/tst_rcsb_web_services.py' adding 'omptbx/__init__.py' adding 'omptbx/tst.py' adding 'qttbx/__init__.py' adding 'qttbx/phil.py' adding 'qttbx/qt.py' adding 'qttbx/run_tests.py' adding 'qttbx/examples/__init__.py' adding 'qttbx/examples/_helpers.py' adding 'qttbx/examples/data_manager_example.py' adding 'qttbx/examples/phil_widgets_example.py' adding 'qttbx/regression/__init__.py' adding 'qttbx/regression/tst_chat_agent_core.py' adding 'qttbx/regression/tst_chat_approval_coordinator.py' adding 'qttbx/regression/tst_chat_artifact_panel.py' adding 'qttbx/regression/tst_chat_auto_height.py' adding 'qttbx/regression/tst_chat_conversation_widgets.py' adding 'qttbx/regression/tst_chat_credentials_dialog.py' adding 'qttbx/regression/tst_chat_diagnostics.py' adding 'qttbx/regression/tst_chat_eliding.py' adding 'qttbx/regression/tst_chat_image.py' adding 'qttbx/regression/tst_chat_logging_setup.py' adding 'qttbx/regression/tst_chat_markdown.py' adding 'qttbx/regression/tst_chat_mcp_client.py' adding 'qttbx/regression/tst_chat_message_bubble.py' adding 'qttbx/regression/tst_chat_message_input.py' adding 'qttbx/regression/tst_chat_overlay_anchor.py' adding 'qttbx/regression/tst_chat_profile.py' adding 'qttbx/regression/tst_chat_question_card.py' adding 'qttbx/regression/tst_chat_runner.py' adding 'qttbx/regression/tst_chat_search.py' adding 'qttbx/regression/tst_chat_session.py' adding 'qttbx/regression/tst_chat_skills.py' adding 'qttbx/regression/tst_chat_storage.py' adding 'qttbx/regression/tst_chat_storage_session.py' adding 'qttbx/regression/tst_chat_subagent.py' adding 'qttbx/regression/tst_chat_subagent_view.py' adding 'qttbx/regression/tst_chat_tool_approval.py' adding 'qttbx/regression/tst_chat_tools.py' adding 'qttbx/regression/tst_chat_window_chrome.py' adding 'qttbx/regression/tst_data_manager_widget.py' adding 'qttbx/regression/tst_phil_widgets.py' adding 'qttbx/regression/tst_run_tests_manifest.py' adding 'qttbx/viewers/__init__.py' adding 'qttbx/viewers/chimerax.py' adding 'qttbx/widgets/__init__.py' adding 'qttbx/widgets/font_init.py' adding 'qttbx/widgets/chat/__init__.py' adding 'qttbx/widgets/chat/artifact.py' adding 'qttbx/widgets/chat/artifact_panel.py' adding 'qttbx/widgets/chat/auto_height.py' adding 'qttbx/widgets/chat/chat_top_bar.py' adding 'qttbx/widgets/chat/conversation_list.py' adding 'qttbx/widgets/chat/conversation_search.py' adding 'qttbx/widgets/chat/conversation_view.py' adding 'qttbx/widgets/chat/credentials_dialog.py' adding 'qttbx/widgets/chat/diagnostics.py' adding 'qttbx/widgets/chat/edge_rail.py' adding 'qttbx/widgets/chat/eliding.py' adding 'qttbx/widgets/chat/image_cache.py' adding 'qttbx/widgets/chat/image_lightbox.py' adding 'qttbx/widgets/chat/logging_setup.py' adding 'qttbx/widgets/chat/markdown_export.py' adding 'qttbx/widgets/chat/markdown_view.py' adding 'qttbx/widgets/chat/message_bubble.py' adding 'qttbx/widgets/chat/message_input.py' adding 'qttbx/widgets/chat/overlay_anchor.py' adding 'qttbx/widgets/chat/question_card.py' adding 'qttbx/widgets/chat/search_bar.py' adding 'qttbx/widgets/chat/tool_approval.py' adding 'qttbx/widgets/chat/tool_call_disclosure.py' adding 'qttbx/widgets/chat/agent/__init__.py' adding 'qttbx/widgets/chat/agent/approval.py' adding 'qttbx/widgets/chat/agent/base.py' adding 'qttbx/widgets/chat/agent/conversation.py' adding 'qttbx/widgets/chat/agent/errors.py' adding 'qttbx/widgets/chat/agent/events.py' adding 'qttbx/widgets/chat/agent/mcp_client.py' adding 'qttbx/widgets/chat/agent/paths.py' adding 'qttbx/widgets/chat/agent/profile.py' adding 'qttbx/widgets/chat/agent/runner.py' adding 'qttbx/widgets/chat/agent/session.py' adding 'qttbx/widgets/chat/agent/skills.py' adding 'qttbx/widgets/chat/agent/storage.py' adding 'qttbx/widgets/chat/agent/subagent.py' adding 'qttbx/widgets/chat/agent/tools.py' adding 'qttbx/widgets/data_manager/__init__.py' adding 'qttbx/widgets/data_manager/_binding_popup.py' adding 'qttbx/widgets/data_manager/_delegate.py' adding 'qttbx/widgets/data_manager/_phil_helpers.py' adding 'qttbx/widgets/data_manager/_table_model.py' adding 'qttbx/widgets/data_manager/widget.py' adding 'qttbx/widgets/phil/__init__.py' adding 'qttbx/widgets/phil/_colors.py' adding 'qttbx/widgets/phil/atom_selection.py' adding 'qttbx/widgets/phil/bool_widget.py' adding 'qttbx/widgets/phil/choice_widget.py' adding 'qttbx/widgets/phil/delegate.py' adding 'qttbx/widgets/phil/float_widget.py' adding 'qttbx/widgets/phil/floats_widget.py' adding 'qttbx/widgets/phil/int_widget.py' adding 'qttbx/widgets/phil/ints_widget.py' adding 'qttbx/widgets/phil/key_widget.py' adding 'qttbx/widgets/phil/multiple.py' adding 'qttbx/widgets/phil/path_widget.py' adding 'qttbx/widgets/phil/qstr_widget.py' adding 'qttbx/widgets/phil/space_group.py' adding 'qttbx/widgets/phil/str_widget.py' adding 'qttbx/widgets/phil/strings_widget.py' adding 'qttbx/widgets/phil/text_base.py' adding 'qttbx/widgets/phil/unit_cell.py' adding 'qttbx/widgets/phil/words_widget.py' adding 'rstbx/__init__.py' adding 'rstbx/run_tests.py' adding 'rstbx/utils.py' adding 'rstbx/apps/__init__.py' adding 'rstbx/apps/dual_resolution_helpers.py' adding 'rstbx/apps/slip_helpers.py' adding 'rstbx/apps/spot_markup.py' adding 'rstbx/apps/stills/__init__.py' adding 'rstbx/apps/stills/deltapsi_refinement_preceding_integration.py' adding 'rstbx/apps/stills/dials_refinement_preceding_integration.py' adding 'rstbx/apps/stills/simple_integration.py' adding 'rstbx/apps/stills/stills_integration.py' adding 'rstbx/apps/stills/util.py' adding 'rstbx/array_family/__init__.py' adding 'rstbx/array_family/flex.py' adding 'rstbx/bandpass/__init__.py' adding 'rstbx/bandpass/simulated_annealing.py' adding 'rstbx/bpcx/__init__.py' adding 'rstbx/bpcx/compare_mosflm_xds.py' adding 'rstbx/bpcx/ersatz_misset.py' adding 'rstbx/bpcx/uc1_2.py' adding 'rstbx/bpcx/uc1_2_positions.py' adding 'rstbx/bpcx/uc1_2_positions_idx.py' adding 'rstbx/bpcx/uc1_2_validate.py' adding 'rstbx/bpcx/uc1_2a.py' adding 'rstbx/bpcx/detector_model/__init__.py' adding 'rstbx/bpcx/detector_model/detector.py' adding 'rstbx/bpcx/detector_model/instrument_specifics.py' adding 'rstbx/bpcx/detector_model/tst_detector_model.py' adding 'rstbx/cftbx/__init__.py' adding 'rstbx/cftbx/coordinate_frame_converter.py' adding 'rstbx/cftbx/coordinate_frame_helpers.py' adding 'rstbx/cftbx/tst_coordinate_frame_converter.py' adding 'rstbx/command_line/__init__.py' adding 'rstbx/command_line/example_viewer.py' adding 'rstbx/command_line/index.py' adding 'rstbx/command_line/simage.create.py' adding 'rstbx/command_line/simage.explore_completeness.py' adding 'rstbx/command_line/simage.solver.py' adding 'rstbx/command_line/simage.wx_display.py' adding 'rstbx/command_line/slip_viewer.py' adding 'rstbx/command_line/viewer.py' adding 'rstbx/detectors/__init__.py' adding 'rstbx/detectors/silicon.py' adding 'rstbx/dials_core/__init__.py' adding 'rstbx/dials_core/integration_core.py' adding 'rstbx/diffraction/__init__.py' adding 'rstbx/diffraction/tst_ewald_sphere.py' adding 'rstbx/diffraction/tst_partial_derivatives.py' adding 'rstbx/diffraction/tst_predict.py' adding 'rstbx/diffraction/fastbragg/__init__.py' adding 'rstbx/diffraction/fastbragg/tst_bragg_minimal.py' adding 'rstbx/diffraction/fastbragg/tst_utils_clustering.py' adding 'rstbx/dps_core/__init__.py' adding 'rstbx/dps_core/basis_choice.py' adding 'rstbx/dps_core/cell_assessment.py' adding 'rstbx/dps_core/constrainment.py' adding 'rstbx/dps_core/lepage.py' adding 'rstbx/dps_core/sampling.py' adding 'rstbx/dps_core/tst_iotbx_converter.py' adding 'rstbx/dps_core/zuoreduction.py' adding 'rstbx/indexing/__init__.py' adding 'rstbx/indexing/do_index.py' adding 'rstbx/indexing/tst_auto_monoscan.py' adding 'rstbx/indexing/tst_dataset1.py' adding 'rstbx/indexing_api/__init__.py' adding 'rstbx/indexing_api/basis_choice.py' adding 'rstbx/indexing_api/force_cell.py' adding 'rstbx/indexing_api/lattice.py' adding 'rstbx/indexing_api/nearest_neighbor.py' adding 'rstbx/indexing_api/outlier_detection.py' adding 'rstbx/indexing_api/outlier_procedure.py' adding 'rstbx/indexing_api/sampling.py' adding 'rstbx/indexing_api/test_dps.py' adding 'rstbx/indexing_api/tools.py' adding 'rstbx/new_horizons/__init__.py' adding 'rstbx/new_horizons/index.py' adding 'rstbx/new_horizons/oscillation_shots.py' adding 'rstbx/new_horizons/pixel_spread.py' adding 'rstbx/new_horizons/speckfinder.py' adding 'rstbx/new_horizons/spot_shape.py' adding 'rstbx/new_horizons/stats_index.py' adding 'rstbx/outlier_spots/__init__.py' adding 'rstbx/outlier_spots/fit_distribution.py' adding 'rstbx/phil/__init__.py' adding 'rstbx/phil/phil_preferences.py' adding 'rstbx/phil/preferences.py' adding 'rstbx/phil/scope.py' adding 'rstbx/simage/__init__.py' adding 'rstbx/simage/create.py' adding 'rstbx/simage/explore_completeness.py' adding 'rstbx/simage/integrate_crude.py' adding 'rstbx/simage/refine_uc_cr.py' adding 'rstbx/simage/run_labelit_index.py' adding 'rstbx/simage/run_spotfinder.py' adding 'rstbx/simage/solver.py' adding 'rstbx/simage/tst.py' adding 'rstbx/simage/wx_display.py' adding 'rstbx/simulation/__init__.py' adding 'rstbx/simulation/constants.py' adding 'rstbx/simulation/sim_pdf.py' adding 'rstbx/simulation/sim_utils.py' adding 'rstbx/simulation/tst_xfel1_simple.py' adding 'rstbx/slip_viewer/__init__.py' adding 'rstbx/slip_viewer/calibration_frame.py' adding 'rstbx/slip_viewer/example_frame_plugin_hidden.py' adding 'rstbx/slip_viewer/frame.py' adding 'rstbx/slip_viewer/pyslip.py' adding 'rstbx/slip_viewer/ring_frame.py' adding 'rstbx/slip_viewer/score_frame.py' adding 'rstbx/slip_viewer/slip_display.py' adding 'rstbx/slip_viewer/slip_viewer_image_factory.py' adding 'rstbx/slip_viewer/tile_generation.py' adding 'rstbx/slip_viewer/uc_frame.py' adding 'rstbx/sublattice_support/__init__.py' adding 'rstbx/sublattice_support/change_basis.py' adding 'rstbx/sublattice_support/tst_sublattice.py' adding 'rstbx/symmetry/__init__.py' adding 'rstbx/symmetry/sgtbx_adaptor.py' adding 'rstbx/symmetry/subgroup.py' adding 'rstbx/symmetry/constraints/__init__.py' adding 'rstbx/symmetry/constraints/g_gradients.py' adding 'rstbx/symmetry/constraints/parameter_reduction.py' adding 'rstbx/viewer/__init__.py' adding 'rstbx/viewer/calibration.py' adding 'rstbx/viewer/calibration_frame.py' adding 'rstbx/viewer/controls.py' adding 'rstbx/viewer/dataset.py' adding 'rstbx/viewer/display.py' adding 'rstbx/viewer/drivers.py' adding 'rstbx/viewer/frame.py' adding 'rstbx/viewer/indexing.py' adding 'rstbx/viewer/integration.py' adding 'rstbx/viewer/pixels3d.py' adding 'rstbx/viewer/processing.py' adding 'rstbx/viewer/results_base.py' adding 'rstbx/viewer/spotfinder_frame.py' adding 'rstbx/viewer/spotfinder_wrap.py' adding 'rstbx/viewer/tst.py' adding 'scitbx/__init__.py' adding 'scitbx/cross_entropy.py' adding 'scitbx/cubicle_neighbors.py' adding 'scitbx/differential_evolution.py' adding 'scitbx/direct_search_simulated_annealing.py' adding 'scitbx/fftpack.py' adding 'scitbx/genetic_algorithm_with_mp.py' adding 'scitbx/golden_section_search.py' adding 'scitbx/lbfgsb.py' adding 'scitbx/libtbx_refresh.py' adding 'scitbx/minimizers.py' adding 'scitbx/minpack.py' adding 'scitbx/r3_utils.py' adding 'scitbx/regular_grid_on_unit_sphere.py' adding 'scitbx/restraints.py' adding 'scitbx/run_tests.py' adding 'scitbx/simplex.py' adding 'scitbx/smoothing.py' adding 'scitbx/array_family/__init__.py' adding 'scitbx/array_family/flex.py' adding 'scitbx/array_family/shared.py' adding 'scitbx/array_family/accessors/__init__.py' adding 'scitbx/array_family/boost_python/__init__.py' adding 'scitbx/array_family/boost_python/regression_test.py' adding 'scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py' adding 'scitbx/array_family/boost_python/tst_flex.py' adding 'scitbx/array_family/boost_python/tst_flex_argument_passing.py' adding 'scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py' adding 'scitbx/array_family/boost_python/tst_numpy_bridge.py' adding 'scitbx/array_family/boost_python/tst_numpy_scalar_conversions.py' adding 'scitbx/array_family/boost_python/tst_shared.py' adding 'scitbx/array_family/boost_python/tst_smart_selection.py' adding 'scitbx/array_family/detail/__init__.py' adding 'scitbx/boost_python/__init__.py' adding 'scitbx/command_line/__init__.py' adding 'scitbx/command_line/apply_tapenade_hints.py' adding 'scitbx/command_line/generate_error_h.py' adding 'scitbx/command_line/histogram.py' adding 'scitbx/command_line/show_exp_times.py' adding 'scitbx/command_line/show_sizes.py' adding 'scitbx/command_line/unicode_examples.py' adding 'scitbx/dtmin/__init__.py' adding 'scitbx/dtmin/auxiliary.py' adding 'scitbx/dtmin/bounds.py' adding 'scitbx/dtmin/compulsory.py' adding 'scitbx/dtmin/min_logging.py' adding 'scitbx/dtmin/minimizer.py' adding 'scitbx/dtmin/optional.py' adding 'scitbx/dtmin/realsymmetricpseudoinverse.py' adding 'scitbx/dtmin/refinebase.py' adding 'scitbx/dtmin/reparams.py' adding 'scitbx/dtmin/twisted_gaussian.py' adding 'scitbx/dtmin/regression/__init__.py' adding 'scitbx/dtmin/regression/tst_dtmin_basic.py' adding 'scitbx/dtmin/regression/tst_dtmin_booth.py' adding 'scitbx/dtmin/regression/tst_dtmin_twisted.py' adding 'scitbx/error/__init__.py' adding 'scitbx/error/tst_error.py' adding 'scitbx/examples/__init__.py' adding 'scitbx/examples/bootstrap.py' adding 'scitbx/examples/chebyshev_lsq_example.py' adding 'scitbx/examples/flex_array_loops.py' adding 'scitbx/examples/flex_grid.py' adding 'scitbx/examples/functions.py' adding 'scitbx/examples/immoptibox_ports.py' adding 'scitbx/examples/integrating_a_weighted_sinc_function.py' adding 'scitbx/examples/lbfgs_linear_least_squares_fit.py' adding 'scitbx/examples/lbfgs_recipe.py' adding 'scitbx/examples/minimizer_comparisons.py' adding 'scitbx/examples/principal_axes_of_inertia.py' adding 'scitbx/examples/rigid_body_refinement_core.py' adding 'scitbx/examples/bevington/__init__.py' adding 'scitbx/examples/bevington/silver.py' adding 'scitbx/glmtbx/__init__.py' adding 'scitbx/glmtbx/boost_python/__init__.py' adding 'scitbx/glmtbx/tests/__init__.py' adding 'scitbx/glmtbx/tests/tst.py' adding 'scitbx/graph/__init__.py' adding 'scitbx/graph/rigidity.py' adding 'scitbx/graph/rigidity_matrix_symbolic.py' adding 'scitbx/graph/tardy_tree.py' adding 'scitbx/graph/test_cases_tardy_pdb.py' adding 'scitbx/graph/tst_rigidity.py' adding 'scitbx/graph/tst_tardy_tree.py' adding 'scitbx/graph/tst_tardy_tree_find_paths.py' adding 'scitbx/graph/tst_utils.py' adding 'scitbx/graph/utils.py' adding 'scitbx/graphics_utils/__init__.py' adding 'scitbx/graphics_utils/tst.py' adding 'scitbx/iso_surface/__init__.py' adding 'scitbx/iso_surface/tst_iso_surface.py' adding 'scitbx/lbfgs/__init__.py' adding 'scitbx/lbfgs/tst_curvatures.py' adding 'scitbx/lbfgs/tst_ext.py' adding 'scitbx/lbfgs/tst_func_free_line_search.py' adding 'scitbx/lbfgs/tst_lbfgs_fem.py' adding 'scitbx/lbfgs/tst_mpi_split_evaluator.py' adding 'scitbx/lbfgs/dev/__init__.py' adding 'scitbx/lbfgs/dev/run.py' adding 'scitbx/lbfgs/dev/twisted_gaussian.py' adding 'scitbx/linalg/__init__.py' adding 'scitbx/linalg/eigensystem.py' adding 'scitbx/linalg/ext.py' adding 'scitbx/linalg/householder.py' adding 'scitbx/linalg/svd.py' adding 'scitbx/linalg/boost_python/__init__.py' adding 'scitbx/linalg/tests/__init__.py' adding 'scitbx/linalg/tests/tst_cholesky.py' adding 'scitbx/linalg/tests/tst_eigensystem.py' adding 'scitbx/linalg/tests/tst_lapack_dsyev.py' adding 'scitbx/linalg/tests/tst_lapack_svd.py' adding 'scitbx/linalg/tests/tst_matrix.py' adding 'scitbx/linalg/tests/tst_svd.py' adding 'scitbx/line_search/__init__.py' adding 'scitbx/lstbx/__init__.py' adding 'scitbx/lstbx/normal_eqns.py' adding 'scitbx/lstbx/normal_eqns_solving.py' adding 'scitbx/lstbx/benchmarks/__init__.py' adding 'scitbx/lstbx/boost_python/__init__.py' adding 'scitbx/lstbx/tests/__init__.py' adding 'scitbx/lstbx/tests/test_problems.py' adding 'scitbx/lstbx/tests/tst_normal_equations.py' adding 'scitbx/math/__init__.py' adding 'scitbx/math/besselk.py' adding 'scitbx/math/breakpoint.py' adding 'scitbx/math/chebyshev_lsq_fit.py' adding 'scitbx/math/clustering.py' adding 'scitbx/math/cubic_spline.py' adding 'scitbx/math/curve_fitting.py' adding 'scitbx/math/des_3_100_13.py' adding 'scitbx/math/des_3_240_21.py' adding 'scitbx/math/distributions.py' adding 'scitbx/math/euler_angles.py' adding 'scitbx/math/ext.py' adding 'scitbx/math/farey.py' adding 'scitbx/math/fit_peak.py' adding 'scitbx/math/fit_quadratic_function.py' adding 'scitbx/math/fliege_mayer_400.py' adding 'scitbx/math/fliege_mayer_900.py' adding 'scitbx/math/fliege_mayer_900_ylm.py' adding 'scitbx/math/gaussian.py' adding 'scitbx/math/gaussian_fit.py' adding 'scitbx/math/gumbel.py' adding 'scitbx/math/incremental_SO3_sampling.py' adding 'scitbx/math/lefebvre.py' adding 'scitbx/math/minimum_covering_ellipsoid.py' adding 'scitbx/math/multiple_superposition.py' adding 'scitbx/math/periodogram.py' adding 'scitbx/math/scale_curves.py' adding 'scitbx/math/sieve_of_eratosthenes.py' adding 'scitbx/math/so3_lie_algebra.py' adding 'scitbx/math/spe.py' adding 'scitbx/math/sphere_sphere_intersection.py' adding 'scitbx/math/superpose.py' adding 'scitbx/math/tst_2d_zernike.py' adding 'scitbx/math/tst_bessel_zeros.py' adding 'scitbx/math/tst_multivariate_moments.py' adding 'scitbx/math/tst_so3_lie_algebra.py' adding 'scitbx/math/tst_undirected_graph.py' adding 'scitbx/math/tst_zernike.py' adding 'scitbx/math/tst_zernike_mom.py' adding 'scitbx/math/undirected_graph.py' adding 'scitbx/math/zernike_align_fft.py' adding 'scitbx/math/boost_python/__init__.py' adding 'scitbx/math/dev/__init__.py' adding 'scitbx/math/erf/__init__.py' adding 'scitbx/math/tests/__init__.py' adding 'scitbx/math/tests/tst_angle_derivative.py' adding 'scitbx/math/tests/tst_bessel.py' adding 'scitbx/math/tests/tst_clustering.py' adding 'scitbx/math/tests/tst_cubic_equation.py' adding 'scitbx/math/tests/tst_curve_fitting.py' adding 'scitbx/math/tests/tst_dmatrix.py' adding 'scitbx/math/tests/tst_error_propagation_matrix_inverse.py' adding 'scitbx/math/tests/tst_euler_angles.py' adding 'scitbx/math/tests/tst_exp_functions.py' adding 'scitbx/math/tests/tst_fit_peak.py' adding 'scitbx/math/tests/tst_fit_quadratic_function.py' adding 'scitbx/math/tests/tst_g_function.py' adding 'scitbx/math/tests/tst_gaussian.py' adding 'scitbx/math/tests/tst_gaussian_fit_1d_analytical.py' adding 'scitbx/math/tests/tst_gcd.py' adding 'scitbx/math/tests/tst_halton.py' adding 'scitbx/math/tests/tst_line_search.py' adding 'scitbx/math/tests/tst_math.py' adding 'scitbx/math/tests/tst_minimum_covering_ellipsoid.py' adding 'scitbx/math/tests/tst_orthonormal_basis.py' adding 'scitbx/math/tests/tst_periodogram.py' adding 'scitbx/math/tests/tst_quadrature.py' adding 'scitbx/math/tests/tst_r3_rotation.py' adding 'scitbx/math/tests/tst_resample.py' adding 'scitbx/math/tests/tst_similarity_indices.py' adding 'scitbx/math/tests/tst_superpose.py' adding 'scitbx/math/tests/tst_tetrahedron.py' adding 'scitbx/math/tests/tst_uniform_rotation_matrix.py' adding 'scitbx/math/tests/tst_weighted_correlation.py' adding 'scitbx/matrix/__init__.py' adding 'scitbx/matrix/row_echelon.py' adding 'scitbx/matrix/tests/__init__.py' adding 'scitbx/matrix/tests/tst_householder.py' adding 'scitbx/matrix/tests/tst_row_echelon.py' adding 'scitbx/misc/__init__.py' adding 'scitbx/python_utils/__init__.py' adding 'scitbx/python_utils/command_line.py' adding 'scitbx/python_utils/dicts.py' adding 'scitbx/python_utils/graph_tools.py' adding 'scitbx/python_utils/misc.py' adding 'scitbx/python_utils/random_transform.py' adding 'scitbx/python_utils/robust_statistics.py' adding 'scitbx/python_utils/signal_utils.py' adding 'scitbx/python_utils/tst_graph.py' adding 'scitbx/python_utils/tst_random_transform.py' adding 'scitbx/python_utils/tst_robust.py' adding 'scitbx/random/__init__.py' adding 'scitbx/random/boost_python/__init__.py' adding 'scitbx/random/tests/__init__.py' adding 'scitbx/random/tests/tst_random.py' adding 'scitbx/rigid_body/__init__.py' adding 'scitbx/rigid_body/tst.py' adding 'scitbx/rigid_body/essence/__init__.py' adding 'scitbx/rigid_body/essence/body_lib.py' adding 'scitbx/rigid_body/essence/featherstone.py' adding 'scitbx/rigid_body/essence/joint_lib.py' adding 'scitbx/rigid_body/essence/make_bundles.py' adding 'scitbx/rigid_body/essence/spatial_lib.py' adding 'scitbx/rigid_body/essence/tardy.py' adding 'scitbx/rigid_body/essence/tst_basic.py' adding 'scitbx/rigid_body/essence/tst_energy_plots.py' adding 'scitbx/rigid_body/essence/tst_tardy.py' adding 'scitbx/rigid_body/essence/wx_tardy.py' adding 'scitbx/rigid_body/proto/__init__.py' adding 'scitbx/rigid_body/proto/featherstone.py' adding 'scitbx/rigid_body/proto/free_motion_reference_impl.py' adding 'scitbx/rigid_body/proto/joint_lib.py' adding 'scitbx/rigid_body/proto/test_simulation.py' adding 'scitbx/rigid_body/proto/test_utils.py' adding 'scitbx/rigid_body/proto/tst_featherstone.py' adding 'scitbx/rigid_body/proto/tst_free_motion.py' adding 'scitbx/rigid_body/proto/tst_free_motion_hard.py' adding 'scitbx/rigid_body/proto/tst_joint_lib.py' adding 'scitbx/rigid_body/proto/tst_molecules.py' adding 'scitbx/rigid_body/proto/tst_singular.py' adding 'scitbx/rigid_body/proto/tst_spherical_refinement.py' adding 'scitbx/rigid_body/proto/utils.py' adding 'scitbx/rigid_body/proto/wx_free_motion.py' adding 'scitbx/rigid_body/proto/wx_joint_lib.py' adding 'scitbx/rigid_body/proto/wx_molecules.py' adding 'scitbx/serialization/__init__.py' adding 'scitbx/slatec/__init__.py' adding 'scitbx/source_generators/__init__.py' adding 'scitbx/source_generators/flex_fwd_h.py' adding 'scitbx/source_generators/lbfgs_fem.py' adding 'scitbx/source_generators/utils.py' adding 'scitbx/source_generators/array_family/__init__.py' adding 'scitbx/source_generators/array_family/generate_algebras.py' adding 'scitbx/source_generators/array_family/generate_all.py' adding 'scitbx/source_generators/array_family/generate_apply.py' adding 'scitbx/source_generators/array_family/generate_operator_functors.py' adding 'scitbx/source_generators/array_family/generate_operator_traits_builtin.py' adding 'scitbx/source_generators/array_family/generate_reductions.py' adding 'scitbx/source_generators/array_family/generate_std_imports.py' adding 'scitbx/source_generators/array_family/operator_functor_info.py' adding 'scitbx/sparse/__init__.py' adding 'scitbx/sparse/boost_python/__init__.py' adding 'scitbx/sparse/tests/__init__.py' adding 'scitbx/sparse/tests/tst_lu_factorization.py' adding 'scitbx/sparse/tests/tst_sparse.py' adding 'scitbx/stdlib/__init__.py' adding 'scitbx/stl/__init__.py' adding 'scitbx/stl/map.py' adding 'scitbx/stl/set.py' adding 'scitbx/stl/tst_map.py' adding 'scitbx/stl/tst_set.py' adding 'scitbx/stl/tst_vector.py' adding 'scitbx/stl/vector.py' adding 'scitbx/suffixtree/__init__.py' adding 'scitbx/suffixtree/single.py' adding 'scitbx/suffixtree/boost_python/__init__.py' adding 'scitbx/suffixtree/test/__init__.py' adding 'scitbx/suffixtree/test/tst_single.py' adding 'scitbx/tests/__init__.py' adding 'scitbx/tests/differential_evolution.py' adding 'scitbx/tests/direct_search_simulated_annealing.py' adding 'scitbx/tests/golden_section_search.py' adding 'scitbx/tests/simplex.py' adding 'scitbx/tests/tst_basic.py' adding 'scitbx/tests/tst_cubicle_neighbors.py' adding 'scitbx/tests/tst_genetic_algorithm_with_mp.py' adding 'scitbx/tests/tst_minimizer_lbfgs_general.py' adding 'scitbx/tests/tst_r3_utils.py' adding 'scitbx/tests/tst_regular_grid_on_unit_sphere.py' adding 'scitbx/tests/tst_smoothing.py' adding 'scitbx/wigner/__init__.py' adding 'scitbx/wigner/tst_wigner3j.py' adding 'serialtbx/__init__.py' adding 'serialtbx/detector/__init__.py' adding 'serialtbx/detector/cspad.py' adding 'serialtbx/detector/jungfrau.py' adding 'serialtbx/detector/rayonix.py' adding 'serialtbx/detector/xtc.py' adding 'serialtbx/detector/legacy_metrology/__init__.py' adding 'serialtbx/detector/legacy_metrology/cspad_detector.py' adding 'serialtbx/detector/legacy_metrology/generic_detector.py' adding 'serialtbx/detector/legacy_metrology/metrology.py' adding 'serialtbx/mono_simulation/__init__.py' adding 'serialtbx/mono_simulation/max_like.py' adding 'serialtbx/mono_simulation/util.py' adding 'serialtbx/util/__init__.py' adding 'serialtbx/util/construct_frame.py' adding 'serialtbx/util/energy_scan_notch_finder.py' adding 'serialtbx/util/time.py' adding 'simtbx/__init__.py' adding 'simtbx/run_tests.py' adding 'simtbx/diffBragg/__init__.py' adding 'simtbx/diffBragg/attr_list.py' adding 'simtbx/diffBragg/device.py' adding 'simtbx/diffBragg/ensemble_refine_launcher.py' adding 'simtbx/diffBragg/hopper_ensemble_utils.py' adding 'simtbx/diffBragg/hopper_io.py' adding 'simtbx/diffBragg/hopper_utils.py' adding 'simtbx/diffBragg/mpi_logger.py' adding 'simtbx/diffBragg/parameter_errors.py' adding 'simtbx/diffBragg/phil.py' adding 'simtbx/diffBragg/prep_stage2_input.py' adding 'simtbx/diffBragg/psf.py' adding 'simtbx/diffBragg/stage_two_utils.py' adding 'simtbx/diffBragg/utils.py' adding 'simtbx/diffBragg/refiners/__init__.py' adding 'simtbx/diffBragg/refiners/base_refiner.py' adding 'simtbx/diffBragg/refiners/geometry.py' adding 'simtbx/diffBragg/refiners/parameters.py' adding 'simtbx/diffBragg/refiners/stage_two_refiner.py' adding 'simtbx/diffBragg/refiners/crystal_systems/__init__.py' adding 'simtbx/diffBragg/refiners/crystal_systems/hexagonal.py' adding 'simtbx/diffBragg/refiners/crystal_systems/manager.py' adding 'simtbx/diffBragg/refiners/crystal_systems/monoclinic.py' adding 'simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py' adding 'simtbx/diffBragg/refiners/crystal_systems/tetragonal.py' adding 'simtbx/gpu/__init__.py' adding 'simtbx/gpu/tst_exafel_api.py' adding 'simtbx/gpu/tst_gpu_multisource_background.py' adding 'simtbx/gpu/tst_shoeboxes.py' adding 'simtbx/kokkos/__init__.py' adding 'simtbx/kokkos/tst_kokkos_lib.py' adding 'simtbx/modeling/FormatHDF5AttributeGeometry.py' adding 'simtbx/modeling/__init__.py' adding 'simtbx/modeling/forward_models.py' adding 'simtbx/modeling/predictions.py' adding 'simtbx/nanoBragg/__init__.py' adding 'simtbx/nanoBragg/anisotropic_mosaicity.py' adding 'simtbx/nanoBragg/nanoBragg_beam.py' adding 'simtbx/nanoBragg/nanoBragg_crystal.py' adding 'simtbx/nanoBragg/nanoBragg_gui_dialogs.py' adding 'simtbx/nanoBragg/nanoBragg_gui_frames.py' adding 'simtbx/nanoBragg/nanoBragg_gui_init.py' adding 'simtbx/nanoBragg/nanoBragg_input.py' adding 'simtbx/nanoBragg/nanoBragg_threads.py' adding 'simtbx/nanoBragg/sim_data.py' adding 'simtbx/nanoBragg/tst_anisotropic_mosaicity.py' adding 'simtbx/nanoBragg/tst_gauss_argchk.py' adding 'simtbx/nanoBragg/tst_gaussian_mosaicity.py' adding 'simtbx/nanoBragg/tst_gaussian_mosaicity2.py' adding 'simtbx/nanoBragg/tst_multisource_background.py' adding 'simtbx/nanoBragg/tst_nanoBragg_basic.py' adding 'simtbx/nanoBragg/tst_nanoBragg_cbf_write.py' adding 'simtbx/nanoBragg/tst_nanoBragg_minimal.py' adding 'simtbx/nanoBragg/tst_nanoBragg_mosaic.py' adding 'simtbx/nanoBragg/tst_nanoBragg_multipanel.py' adding 'simtbx/nanoBragg/tst_nanoBragg_pilatus.py' adding 'simtbx/nanoBragg/utils.py' adding 'simtbx/pixel/__init__.py' adding 'smtbx/__init__.py' adding 'smtbx/development.py' adding 'smtbx/libtbx_refresh.py' adding 'smtbx/run_tests.py' adding 'smtbx/utils.py' adding 'smtbx/ab_initio/__init__.py' adding 'smtbx/ab_initio/charge_flipping.py' adding 'smtbx/ab_initio/tests/__init__.py' adding 'smtbx/ab_initio/tests/tst_ab_initio_ext.py' adding 'smtbx/ab_initio/tests/tst_charge_flipping.py' adding 'smtbx/absolute_structure/__init__.py' adding 'smtbx/array_family/__init__.py' adding 'smtbx/command_line/__init__.py' adding 'smtbx/command_line/absolute_structure.py' adding 'smtbx/command_line/anom_refine.py' adding 'smtbx/command_line/benchmark_refinement.py' adding 'smtbx/command_line/masks.py' adding 'smtbx/command_line/refine.py' adding 'smtbx/masks/__init__.py' adding 'smtbx/refinement/__init__.py' adding 'smtbx/refinement/least_squares.py' adding 'smtbx/refinement/weighting_schemes.py' adding 'smtbx/refinement/constraints/__init__.py' adding 'smtbx/refinement/constraints/adp.py' adding 'smtbx/refinement/constraints/all.py' adding 'smtbx/refinement/constraints/fpfdp.py' adding 'smtbx/refinement/constraints/occupancy.py' adding 'smtbx/refinement/constraints/rigid.py' adding 'smtbx/refinement/constraints/site.py' adding 'smtbx/refinement/constraints/geometrical/__init__.py' adding 'smtbx/refinement/constraints/geometrical/all.py' adding 'smtbx/refinement/constraints/geometrical/hydrogens.py' adding 'smtbx/refinement/constraints/tests/__init__.py' adding 'smtbx/refinement/constraints/tests/tst_constrained_structure.py' adding 'smtbx/refinement/constraints/tests/tst_direction.py' adding 'smtbx/refinement/constraints/tests/tst_disorder.py' adding 'smtbx/refinement/constraints/tests/tst_lbfgs.py' adding 'smtbx/refinement/constraints/tests/tst_occupancies.py' adding 'smtbx/refinement/constraints/tests/tst_reparametrisation.py' adding 'smtbx/refinement/constraints/tests/tst_rigid.py' adding 'smtbx/refinement/constraints/tests/tst_same_group.py' adding 'smtbx/refinement/restraints/__init__.py' adding 'smtbx/refinement/restraints/adp_restraints.py' adding 'smtbx/refinement/restraints/origin_fixing_restraints.py' adding 'smtbx/regression/__init__.py' adding 'smtbx/regression/tst_commandline_anomrefine.py' adding 'smtbx/regression/tst_commandline_refine.py' adding 'smtbx/regression/test_data/__init__.py' adding 'smtbx/source_generators/__init__.py' adding 'smtbx/source_generators/flex_fwd_h.py' adding 'smtbx/stl/__init__.py' adding 'smtbx/stl/map.py' adding 'smtbx/structure_factors/__init__.py' adding 'smtbx/structure_factors/direct/__init__.py' adding 'spotfinder/__init__.py' adding 'spotfinder/exception.py' adding 'spotfinder/run_tests.py' adding 'spotfinder/applications/__init__.py' adding 'spotfinder/applications/image_viewer.py' adding 'spotfinder/applications/practical_heuristics.py' adding 'spotfinder/applications/signal_strength.py' adding 'spotfinder/applications/stats_distl.py' adding 'spotfinder/applications/wrappers.py' adding 'spotfinder/applications/heuristic_tbx/__init__.py' adding 'spotfinder/applications/heuristic_tbx/ice2.py' adding 'spotfinder/applications/heuristic_tbx/ice_nztt.py' adding 'spotfinder/applications/heuristic_tbx/method2_resolution.py' adding 'spotfinder/applications/heuristic_tbx/spotreporter.py' adding 'spotfinder/applications/xfel/__init__.py' adding 'spotfinder/applications/xfel/correction_vector_plot.py' adding 'spotfinder/applications/xfel/cxi_phil.py' adding 'spotfinder/applications/xfel/cxi_run3.py' adding 'spotfinder/array_family/__init__.py' adding 'spotfinder/array_family/flex.py' adding 'spotfinder/command_line/__init__.py' adding 'spotfinder/command_line/find_active_area.py' adding 'spotfinder/command_line/image_viewer.py' adding 'spotfinder/command_line/mp_spotfinder_server_read_file.py' adding 'spotfinder/command_line/signal_strength.py' adding 'spotfinder/command_line/sweep_strength.py' adding 'spotfinder/command_line/thin_client.py' adding 'spotfinder/core_toolbox/__init__.py' adding 'spotfinder/core_toolbox/close_spots_detail.py' adding 'spotfinder/diffraction/__init__.py' adding 'spotfinder/diffraction/geometry.py' adding 'spotfinder/diffraction/imagefiles.py' adding 'spotfinder/dxtbx_toolbox/__init__.py' adding 'spotfinder/dxtbx_toolbox/practical_heuristics.py' adding 'spotfinder/math_support/__init__.py' adding 'spotfinder/math_support/sphere_formulae.py' adding 'spotfinder/servers/__init__.py' adding 'spotfinder/servers/adsc_client.py' adding 'spotfinder/servers/apache.py' adding 'spotfinder/servers/apache_bcsb.py' adding 'spotfinder/servers/apache_dials.py' adding 'spotfinder/servers/apache_utils.py' adding 'spotfinder/servers/bcsb_client_example.py' adding 'spotfinder/servers/general_client_example.py' adding 'spotfinder/servers/mp_spotfinder_server_is_alive.py' adding 'spotfinder/servers/mp_spotfinder_server_read_file.py' adding 'spotfinder/servers/multipart_encoder.py' adding 'spotfinder/servers/pilatus_client.py' adding 'spotfinder/servers/specific_client_example.py' adding 'spotfinder/servers/spotfinder_server_client_push.py' adding 'spotfinder/servers/spotfinder_server_read_file.py' adding 'spotfinder/servers/thin_client.py' adding 'wxtbx/__init__.py' adding 'wxtbx/adp_statistics.py' adding 'wxtbx/anomalous_scattering.py' adding 'wxtbx/app.py' adding 'wxtbx/b_plot.py' adding 'wxtbx/bitmaps.py' adding 'wxtbx/browser.py' adding 'wxtbx/checklistctrl.py' adding 'wxtbx/custom_restraints.py' adding 'wxtbx/ensemble_validation.py' adding 'wxtbx/errors.py' adding 'wxtbx/heavy_atoms.py' adding 'wxtbx/icons.py' adding 'wxtbx/info_panels.py' adding 'wxtbx/layout.py' adding 'wxtbx/listeditor.py' adding 'wxtbx/metallicbutton.py' adding 'wxtbx/misc_dialogs.py' adding 'wxtbx/monitor.py' adding 'wxtbx/mtz_dump.py' adding 'wxtbx/path_dialogs.py' adding 'wxtbx/pdb_editor.py' adding 'wxtbx/polygon.py' adding 'wxtbx/polygon_db_viewer.py' adding 'wxtbx/process_control.py' adding 'wxtbx/qstat_view.py' adding 'wxtbx/run_tests.py' adding 'wxtbx/segmentedctrl.py' adding 'wxtbx/sequence_view.py' adding 'wxtbx/symmetry_dialog.py' adding 'wxtbx/tables.py' adding 'wxtbx/utils.py' adding 'wxtbx/windows.py' adding 'wxtbx/xtriage.py' adding 'wxtbx/command_line/__init__.py' adding 'wxtbx/command_line/anomalous_differences_histogram.py' adding 'wxtbx/command_line/b_plot.py' adding 'wxtbx/command_line/inspect_r_free_flags.py' adding 'wxtbx/command_line/loggraph.py' adding 'wxtbx/command_line/pdb_editor.py' adding 'wxtbx/command_line/pdb_statistics.py' adding 'wxtbx/command_line/plan_sad_experiment.py' adding 'wxtbx/command_line/plot_anomalous_scattering.py' adding 'wxtbx/command_line/show_file_info.py' adding 'wxtbx/command_line/wxpython.py' adding 'wxtbx/command_line/xtriage.py' adding 'wxtbx/phil_controls/__init__.py' adding 'wxtbx/phil_controls/array_label.py' adding 'wxtbx/phil_controls/boolctrl.py' adding 'wxtbx/phil_controls/choice.py' adding 'wxtbx/phil_controls/choice_multi.py' adding 'wxtbx/phil_controls/floatctrl.py' adding 'wxtbx/phil_controls/floats.py' adding 'wxtbx/phil_controls/intctrl.py' adding 'wxtbx/phil_controls/ints.py' adding 'wxtbx/phil_controls/misc_ctrls.py' adding 'wxtbx/phil_controls/numbers.py' adding 'wxtbx/phil_controls/path.py' adding 'wxtbx/phil_controls/simple_dialogs.py' adding 'wxtbx/phil_controls/space_group.py' adding 'wxtbx/phil_controls/strctrl.py' adding 'wxtbx/phil_controls/strings.py' adding 'wxtbx/phil_controls/symop.py' adding 'wxtbx/phil_controls/text_base.py' adding 'wxtbx/phil_controls/tree.py' adding 'wxtbx/phil_controls/tribool.py' adding 'wxtbx/phil_controls/unit_cell.py' adding 'wxtbx/plots/__init__.py' adding 'wxtbx/plots/emringer.py' adding 'wxtbx/plots/molprobity.py' adding 'wxtbx/regression/__init__.py' adding 'wxtbx/regression/_headless_construct_cases.py' adding 'wxtbx/regression/_warnings.py' adding 'wxtbx/regression/tst_b_plot.py' adding 'wxtbx/regression/tst_headless_construct.py' adding 'wxtbx/regression/tst_imports.py' adding 'wxtbx/regression/tst_process_control.py' adding 'wxtbx/reports/__init__.py' adding 'wxtbx/reports/blast.py' adding 'wxtbx/reports/pdb_symmetry.py' adding 'xcif/__init__.py' adding 'xcif/run_tests.py' adding 'xcif/benchmarks/__init__.py' adding 'xcif/benchmarks/run_benchmarks.py' adding 'xcif/regression/__init__.py' adding 'xcif/regression/tst_api_compat.py' adding 'xcif/regression/tst_bindings.py' adding 'xcif/regression/tst_example_parse.py' adding 'xcif/regression/tst_example_tokenize.py' adding 'xcif/regression/tst_gil_release.py' adding 'xcif/regression/tst_iotbx_cif_reader_engine.py' adding 'xcif/regression/tst_iotbx_cif_reader_parity.py' adding 'xcif/regression/tst_memory.py' adding 'xcif/regression/tst_non_strict_mode.py' adding 'xcif/regression/tst_parse_verify.py' adding 'xcif/regression/tst_pdb_coordinates.py' adding 'xcif/regression/tst_pdb_sf.py' adding 'xcif/regression/tst_quoted_string_delimiter.py' adding 'xcif/regression/tst_roundtrip.py' adding 'xcif/regression/tst_semicolon_field_strict.py' adding 'xcif/regression/tst_string_interning.py' adding 'xcif/regression/tst_utf8.py' adding 'cctbx-2023.12.dist-info/METADATA' adding 'cctbx-2023.12.dist-info/WHEEL' adding 'cctbx-2023.12.dist-info/top_level.txt' adding 'cctbx-2023.12.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built cctbx-2023.12-py3-none-any.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.14 with "installer" module dh_auto_build --sourcedirectory=dxtbx -- --name dxtbx pybuild --build -i python{version} -p 3.14 --name dxtbx --dir dxtbx --parallel=6 I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_dxtbx * Building wheel... Successfully built dxtbx-3.30.0-py3-none-any.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.14 with "installer" module dh_auto_build -- --name cctbx -s custom --build-args="cd {build_dir}_ && ./bin/libtbx.scons -j 6" pybuild --build -i python{version} -p 3.14 --name cctbx -s custom --build-args="cd {build_dir}_ && ./bin/libtbx.scons -j 6" --parallel=6 I: pybuild base:385: cd '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build'_ && ./bin/libtbx.scons -j 6 scons: Reading SConscript files ... libtbx.scons: using flags from initial environment: CXXFLAGS = -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-z,relro -lhdf5_serial libtbx.scons: OpenMP is disabled. BOOST_PYTHON_LIB_VERSION: boost_python314 BOOST_NUMPY_LIB_VERSION: boost_numpy314 BOOST_VERSION: 109200 Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cbflib.tst_memory' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.getting_started' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.sym_equiv_sites' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.convert_ccp4_symop_lib' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.lattice_symmetry' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.find_distances' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.sys_abs_equiv_space_groups' scons: done reading SConscript files. scons: Building targets ... g++ -o annlib_adaptbx/ann/ann_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -Iannlib_adaptbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/src -Iannlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/ann/ann_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o annlib_adaptbx/ann/boost_python/annlib_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/usr/include/python3.14 -Iannlib_adaptbx/ann/boost_python/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/ann/boost_python/src -Iannlib_adaptbx/ann/boost_python/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/ann/boost_python/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/ann/boost_python/annlib_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/blobs_cmd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/blobs_cmd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/asymmetric_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/asymmetric_map.cpp g++ -o cctbx/maptbx/skeletons.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/skeletons.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/dijkstra.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/dijkstra.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/xplor/map_reader.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/xplor/map_reader.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/xplor/map_writer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/xplor/map_writer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/cut.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/direct_space_asu/proto/cut.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/reference_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/direct_space_asu/proto/reference_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libiotbx_xplor.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libiotbx_xplor.so.0 iotbx/xplor/map_reader.o iotbx/xplor/map_writer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm Create symlinks for: 'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so.0'->'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so'->'lib/libiotbx_xplor.so.0.0.1' g++ -o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/basic.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/basic.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/it1992.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering/it1992.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/wk1995.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering/wk1995.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/n_gaussian_raw.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/n_gaussian.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering/n_gaussian.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/fp_fdp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/fp_fdp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_01_12.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_01_12.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_13_24.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_13_24.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_25_36.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_25_36.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_37_48.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_37_48.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_49_60.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_49_60.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_61_72.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_61_72.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_73_84.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_73_84.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_85_92.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_85_92.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/icsd_radii.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/icsd_radii.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/covalent_radii.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/covalent_radii.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/neutron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/neutron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_01_12.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_01_12.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_13_24.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_13_24.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_25_36.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_25_36.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_37_48.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_37_48.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_49_60.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_49_60.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_61_72.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_61_72.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_73_82.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_73_82.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/tiny_pse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/tiny_pse.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/wavelengths.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/wavelengths.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/electron_scattering/peng1996.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/electron_scattering/peng1996.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/attenuation_coefficient.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/attenuation_coefficient.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/bins.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/bins.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/index_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/index_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/index_span.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/index_span.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_bijvoet_mates.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_multi_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/sym_equiv.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/sym_equiv.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/bricks.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/bricks.cpp g++ -o cctbx/sgtbx/change_of_basis_op.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/find_affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/find_affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/group_codes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/group_codes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/hall_in.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/hall_in.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/lattice_tr.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/lattice_tr.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/miller.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/miller.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reciprocal_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reciprocal_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reciprocal_space_ref_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reciprocal_space_ref_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rot_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rot_mx_info.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx_info.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/row_echelon_solve.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/row_echelon_solve.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rt_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/select_generators.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/select_generators.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/seminvariant.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/seminvariant.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/site_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/space_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/space_group_type.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group_type.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/symbols.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/symbols.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tr_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tr_vec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_vec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/hall_symbol_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reference_settings/hall_symbol_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/matrix_group_code_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/normalizer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reference_settings/normalizer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reference_settings/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/uctbx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/uctbx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/spoil_optimization.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/spoil_optimization.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/crystal_orientation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/crystal_orientation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o omptbx/stubs.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/omptbx/stubs.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/breadth_first_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/breadth_first_search_ext.cpp g++ -o lib/libomptbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libomptbx.so.0 omptbx/stubs.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so.0'->'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so'->'lib/libomptbx.so.0.0.1' g++ -o boost_adaptbx/graph/clustering_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/clustering_algorithm_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/connected_component_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/connected_component_algorithm_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/graph_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libcctbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libcctbx.so.0 cctbx/eltbx/basic.o cctbx/eltbx/xray_scattering/it1992.o cctbx/eltbx/xray_scattering/wk1995.o cctbx/eltbx/xray_scattering/n_gaussian_raw.o cctbx/eltbx/xray_scattering/n_gaussian.o cctbx/eltbx/fp_fdp.o cctbx/eltbx/henke.o cctbx/eltbx/henke_tables_01_12.o cctbx/eltbx/henke_tables_13_24.o cctbx/eltbx/henke_tables_25_36.o cctbx/eltbx/henke_tables_37_48.o cctbx/eltbx/henke_tables_49_60.o cctbx/eltbx/henke_tables_61_72.o cctbx/eltbx/henke_tables_73_84.o cctbx/eltbx/henke_tables_85_92.o cctbx/eltbx/icsd_radii.o cctbx/eltbx/covalent_radii.o cctbx/eltbx/neutron.o cctbx/eltbx/sasaki.o cctbx/eltbx/sasaki_tables_01_12.o cctbx/eltbx/sasaki_tables_13_24.o cctbx/eltbx/sasaki_tables_25_36.o cctbx/eltbx/sasaki_tables_37_48.o cctbx/eltbx/sasaki_tables_49_60.o cctbx/eltbx/sasaki_tables_61_72.o cctbx/eltbx/sasaki_tables_73_82.o cctbx/eltbx/tiny_pse.o cctbx/eltbx/wavelengths.o cctbx/eltbx/electron_scattering/peng1996.o cctbx/eltbx/attenuation_coefficient.o cctbx/miller/asu.o cctbx/miller/bins.o cctbx/miller/index_generator.o cctbx/miller/index_span.o cctbx/miller/match_bijvoet_mates.o cctbx/miller/match_indices.o cctbx/miller/match_multi_indices.o cctbx/miller/sym_equiv.o cctbx/sgtbx/bricks.o cctbx/sgtbx/change_of_basis_op.o cctbx/sgtbx/find_affine.o cctbx/sgtbx/group_codes.o cctbx/sgtbx/hall_in.o cctbx/sgtbx/lattice_tr.o cctbx/sgtbx/lattice_symmetry.o cctbx/sgtbx/miller.o cctbx/sgtbx/reciprocal_space_asu.o cctbx/sgtbx/reciprocal_space_ref_asu.o cctbx/sgtbx/rot_mx.o cctbx/sgtbx/rot_mx_info.o cctbx/sgtbx/row_echelon_solve.o cctbx/sgtbx/rt_mx.o cctbx/sgtbx/select_generators.o cctbx/sgtbx/seminvariant.o cctbx/sgtbx/site_symmetry.o cctbx/sgtbx/space_group.o cctbx/sgtbx/space_group_type.o cctbx/sgtbx/symbols.o cctbx/sgtbx/tensor_rank_2.o cctbx/sgtbx/tr_group.o cctbx/sgtbx/tr_vec.o cctbx/sgtbx/utils.o cctbx/sgtbx/wyckoff.o cctbx/sgtbx/reference_settings/hall_symbol_table.o cctbx/sgtbx/reference_settings/matrix_group_code_table.o cctbx/sgtbx/reference_settings/normalizer.o cctbx/sgtbx/reference_settings/wyckoff.o cctbx/uctbx/uctbx.o cctbx/uctbx/spoil_optimization.o cctbx/uctbx/crystal_orientation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm Create symlinks for: 'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so.0'->'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so'->'lib/libcctbx.so.0.0.1' g++ -o boost_adaptbx/graph/graph_structure_comparison_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_structure_comparison_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/breadth_first_search_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/clustering_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/connected_component_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_structure_comparison_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/maximum_clique_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/maximum_clique_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/metric_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/metric_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/min_cut_max_flow_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/min_cut_max_flow_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/utility_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/utility_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/maximum_clique_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/min_cut_max_flow_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/metric_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/utility_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/libcctbx_sgtbx_asu.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libcctbx_sgtbx_asu.so.0 cctbx/sgtbx/direct_space_asu/proto/cut.o cctbx/sgtbx/direct_space_asu/proto/reference_table.o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lm Create symlinks for: 'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so.0'->'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so'->'lib/libcctbx_sgtbx_asu.so.0.0.1' g++ -o lib/libasymmetric_map.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libasymmetric_map.so.0 cctbx/maptbx/asymmetric_map.o cctbx/maptbx/skeletons.o cctbx/maptbx/dijkstra.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm Create symlinks for: 'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so.0'->'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so'->'lib/libasymmetric_map.so.0.0.1' g++ -o bin/cctbx_blobs -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/maptbx/blobs_cmd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm g++ -o boost_adaptbx/hybrid_times_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/hybrid_times_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/meta_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/meta_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/optional_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/optional_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/rational_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/rational_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/std_pair_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/std_pair_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/boost_thread_test.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/tests/boost_thread_test.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/python_streambuf_test_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/tests/python_streambuf_test_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/tests/tst_optional_copy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/tst_optional_copy -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread boost_adaptbx/tests/tst_optional_copy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o boost_adaptbx/tuple_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/tuple_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DSWIG_PYTHON_STRICT_BYTE_CHAR -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/boost_python/cbflib_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/buffer_based_service.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/buffer_based_service.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/cbf_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/cbf_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/cbf_byte_offset_optimized.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/mar_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/mar_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/tst_memory.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DCBF_NO_REGEX -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/tst_memory.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ gcc -o ccp4io_adaptbx/fortran_call_stubs.o -c -std=gnu17 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io -I. -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io_adaptbx/fortran_call_stubs.c gcc -o ccp4io_adaptbx/printf_wrappers.o -c -std=gnu17 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io -I. -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io_adaptbx/printf_wrappers.c g++ -o cctbx/adp_restraints/adp_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/adp_restraints_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/adp_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/adp_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/adp_similarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/adp_similarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/aniso_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/aniso_restraints_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/fixed_u_eq_adp_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/isotropic_adp_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/isotropic_adp_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/rigid_bond_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/rigid_bond_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/rigu_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/rigu_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/adptbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adptbx/boost_python/adptbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/anharmonic_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adptbx/boost_python/anharmonic_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/hirshfeld.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adptbx/boost_python/hirshfeld.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/array_family/boost_python/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_hendrickson_lattman.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/array_family/boost_python/flex_hendrickson_lattman.cpp g++ -o cctbx/array_family/boost_python/flex_miller_index.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/array_family/boost_python/flex_miller_index.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_xray_scatterer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/array_family/boost_python/flex_xray_scatterer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/emma_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/boost_python/emma_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/french_wilson_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/boost_python/french_wilson_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/orientation_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/boost_python/orientation_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/statistics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/boost_python/statistics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/covariance/boost_python/covariance_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/covariance/boost_python/covariance_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/asu_clusters_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/asu_clusters_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/close_packing_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/close_packing_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/coordination_sequences_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/coordination_sequences_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/crystal_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/crystal_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/direct_space_asu_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/incremental_pairs_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/incremental_pairs_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/neighbors_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/neighbors_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/pair_tables_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/pair_tables_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/site_cluster_analysis_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/site_cluster_analysis_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/symmetry_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/symmetry_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/dmtbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/dmtbx/boost_python/dmtbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/triplet_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/dmtbx/boost_python/triplet_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/triplet_phase_relation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/dmtbx/boost_python/triplet_phase_relation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/attenuation_coefficient_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/chemical_elements_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/chemical_elements_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/covalent_radii_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/covalent_radii_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/fp_fdp_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/fp_fdp_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/henke_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/henke_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/icsd_radii_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/icsd_radii_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/neutron_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/neutron_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/sasaki_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/sasaki_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/tiny_pse_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/tiny_pse_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/wavelengths_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/wavelengths_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/xray_scattering_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/xray_scattering_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/convert_ccp4_symop_lib.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/convert_ccp4_symop_lib.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/find_distances.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/find_distances.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/getting_started.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/getting_started.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/sym_equiv_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/sym_equiv_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/sys_abs_equiv_space_groups.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/sys_abs_equiv_space_groups.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry/boost_python/geometry_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry/boost_python/geometry_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/angle_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/bond_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/bond_similarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_misc.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp:14: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::map; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp:129:23: required from here 129 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 130 | "bond_params_table") | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp:232:25: required from here 232 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 233 | "shared_bond_simple_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp:340:25: required from here 340 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 341 | "shared_bond_asu_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle_bpl.cpp:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle_bpl.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::angle_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle_bpl.cpp:75:65: required from here 75 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 76 | "shared_angle_proxy") | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/bond_sorted_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_sorted_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/chirality_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/chirality_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/dihedral_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:12: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity.h:84:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 84 | for(int i=0;i, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity.h:108:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 108 | for(int i=0;i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_similarity_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:55:44: required from here 54 | scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | bond_similarity_proxy, rir>::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | "shared_bond_similarity_proxy"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny, 2>; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:79:54: required from here 78 | scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 | af::tiny, 2>, rbv>::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 80 | "sites_array"); | ~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_sorted.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_sorted_bpl.cpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h: In instantiation of ‘int cctbx::crystal::direct_space_asu::asu_mappings::find_i_sym(unsigned int, const cctbx::sgtbx::rt_mx&) const [with FloatType = double; IntShiftType = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/pair_tables.h:643:46: required from ‘bool cctbx::crystal::pair_asu_table::process_pair(unsigned int, unsigned int, const cctbx::sgtbx::rt_mx&) [with FloatType = double; IntShiftType = int]’ 643 | int j_sym = asu_mappings_->find_i_sym(j_seq, rt_mx_j); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/pair_tables.h:543:35: required from ‘cctbx::crystal::pair_asu_table& cctbx::crystal::pair_asu_table::add_pair(const scitbx::af::tiny&) [with FloatType = double; IntShiftType = int]’ 543 | bool is_new = process_pair(i_seqs[0], i_seqs[1], rt_mx_ji); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_sorted.h:16:30: required from here 16 | pair_asu_table.add_pair(bond_simple_proxies[i].i_seqs); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:859:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 859 | for(int i_sym=0; i_sym, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 869 | for(int i_sym=0; i_sym cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = dihedral_proxy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:110:17: required from here 110 | shared_proxy_remove, ( | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/chirality.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/chirality_bpl.cpp:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::dihedral_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:84:65: required from here 84 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 85 | "shared_dihedral_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/chirality_bpl.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::chirality_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/chirality_bpl.cpp:75:60: required from here 75 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 76 | "shared_chirality_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/tuple.hpp:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/shared_wrapper_pickle.hpp:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle_bpl.cpp:2: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o cctbx/geometry_restraints/geometry_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/geometry_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/motif_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/motif_bpl.cpp g++ -o cctbx/geometry_restraints/nonbonded_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/nonbonded_sorted_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:92:25: required from here 92 | shared_w_t::wrap("shared_nonbonded_simple_proxy") | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:125:25: required from here 125 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 126 | "shared_nonbonded_asu_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/parallelity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/neighbors_fast.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/pair_tables.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = cctbx::cartesian; CubicleContentType = std::vector; FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/neighbors_fast.h:77:34: required from ‘cctbx::crystal::neighbors::fast_pair_generator::fast_pair_generator(const boost::shared_ptr >&, const FloatType&, bool, const FloatType&, const FloatType&) [with FloatType = double; IntShiftType = int]’ 77 | cubicles_.i_cubicle(mappings[mi.i_seq][mi.i_sym].mapped_site())); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:80:27: required from here 80 | min_cubicle_edge); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/geometry_restraints/planarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/planarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::parallelity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp:82:60: required from here 82 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 83 | "shared_parallelity_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/planarity_bpl.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::planarity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/planarity_bpl.cpp:62:23: required from here 62 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 63 | "shared_planarity_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/maptbx/asymmetric_map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/asymmetric_map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/bcr/bcr_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/bcr/bcr_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/coordinate_transformers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/coordinate_transformers.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/grid_indices_around_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/grid_indices_around_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/grid_tags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/grid_tags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/gridding.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/gridding.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/maptbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/maptbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/misc.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/misc.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/peak_search.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/peak_search.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/pymol_interface.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/pymol_interface.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/statistics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/statistics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/structure_factors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/structure_factors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/masks/boost_python/masks_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/masks/boost_python/masks_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/math/boost_python/math_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/time_trigonometry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/math/time_trigonometry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/time_trigonometry -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/math/time_trigonometry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_timer -lm g++ -o cctbx/merging/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/merging/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/amplitude_normalisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/amplitude_normalisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/bins.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/bins.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/change_basis.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/change_basis.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/expand_to_p1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/expand_to_p1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/f_calc_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/f_calc_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/index_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/index_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/index_span.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/index_span.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/lookup_utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/lookup_utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/match_bijvoet_mates.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/match_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/match_multi_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/merge_equivalents.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/merge_equivalents.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/miller_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/miller_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/phase_integrator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/phase_integrator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/phase_transfer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/phase_transfer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/randomize_amplitude_and_phase.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/randomize_amplitude_and_phase.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/slices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/slices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/sym_equiv.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/sym_equiv.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/multipolar/aspherical_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/multipolar/aspherical_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/brick.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/brick.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/change_of_basis.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/change_of_basis.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/find_affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/find_affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/phase_info.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/phase_info.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/reciprocal_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/reciprocal_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/rot_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/rot_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/rt_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/rt_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/search_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/search_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/select_generators.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/select_generators.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/seminvariant.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/seminvariant.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/sgtbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/sgtbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/site_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/site_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/space_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/space_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/space_group_type.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/space_group_type.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/sym_equiv_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/sym_equiv_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/symbols.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/symbols.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tensors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/tensors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tr_vec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/tr_vec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/direct_space_asu/proto/asu_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/symmetry_search/boost_python/symmetry_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/symmetry_search/boost_python/symmetry_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lm g++ -o cctbx/translation_search/boost_python/fast_nv1995.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/translation_search/boost_python/fast_nv1995.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/fast_terms.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/translation_search/boost_python/fast_terms.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/symmetry_flags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/translation_search/boost_python/symmetry_flags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/translation_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/translation_search/boost_python/translation_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/fast_minimum_reduction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/boost_python/fast_minimum_reduction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/niggli_reduction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/boost_python/niggli_reduction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/uctbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/boost_python/uctbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/determine_unit_cell/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_SINGLEFILE_NCDIST -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/determine_unit_cell/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/conversions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/conversions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/curvatures_simple.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/curvatures_simple.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/each_hkl_gradients_direct.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/each_hkl_gradients_direct.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/extinction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/extinction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/f_model_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/f_model_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/curvatures_simple.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/curvatures_simple.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/gradients_direct.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/each_hkl_gradients_direct.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/each_hkl_gradients_direct.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/fast_gradients.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/fast_gradients.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_indices.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/lookup_utils.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/f_model.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/f_model_bpl.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/f_model.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/gradient_flags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/gradient_flags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/f_model.h: In instantiation of ‘cctbx::xray::f_model_core_data::f_model_core_data cctbx::xray::f_model_core_data::f_model_core_data::select(const scitbx::af::const_ref&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/f_model_bpl.cpp:174:32: required from here 174 | .def("select", &w_t::select) | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/f_model.h:732:38: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 732 | CCTBX_ASSERT( iselection[ii]::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/parameter_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/parameter_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/minimization.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/minimization.cpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_indices.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/lookup_utils.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:14, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h: In instantiation of ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here 68 | .def("bic", &w_t::bic) | ^~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:257:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 257 | for (long int ii=0;ii::r_abs() [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:69:31: required from here 69 | .def("r_abs", &w_t::r_abs) | ^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:271:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 271 | for (long int ii=0;ii cctbx::xray::grouped_data::merger::combine_obs(long int) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:258:24: required from ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’ 258 | tmp_result = combine_obs( ii ); | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here 68 | .def("bic", &w_t::bic) | ^~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:213:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 213 | for (int ii=1;ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int ii=1;ii::unmerged_data(scitbx::af::const_ref >, scitbx::af::const_ref >, const cctbx::sgtbx::space_group&, const bool&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::unmerged_data; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<4>::apply::execute(PyObject*, t0, t1, t2, t3) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; W = cctbx::xray::grouped_data::unmerged_data; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:27:15: required from here 26 | class_("unmerged_data", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 | .def(init< scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 | scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 | sgtbx::space_group const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | bool const& | ~~~~~~~~~~~ 31 | > | ~ 32 | (( arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~~ 33 | arg("asu_hkl"), | ~~~~~~~~~~~~~~~ 34 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 35 | arg("anomalous_flag") ))) | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:54:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 54 | for (int ii=0;ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for (int ii=0; ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:67:11: note: in expansion of macro ‘CCTBX_ASSERT’ 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h: In instantiation of ‘cctbx::xray::grouped_data::merger::merger(scitbx::af::const_ref >, scitbx::af::const_ref, scitbx::af::const_ref, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::merger; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref&; t2 = const scitbx::af::const_ref&; t3 = const cctbx::sgtbx::space_group&; t4 = const bool&; t5 = const cctbx::uctbx::unit_cell&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; W = cctbx::xray::grouped_data::merger; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:54:15: required from here 53 | class_("merger", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 | .def(init< scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | scitbx::af::const_ref< double > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | scitbx::af::const_ref< double > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | sgtbx::space_group const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | bool const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 | cctbx::uctbx::unit_cell const& | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 | > | ~ 61 | (( arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~~ 62 | arg("i_obs"), | ~~~~~~~~~~~~~ 63 | arg("s_obs"), | ~~~~~~~~~~~~~ 64 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 65 | arg("anomalous_flag"), | ~~~~~~~~~~~~~~~~~~~~~~ 66 | arg("unit_cell") | ~~~~~~~~~~~~~~~~ 67 | ))) | ~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:151:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 151 | for (int ii=0;ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 167 | for (int ii=0; ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/scatterer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/sampled_model_density.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/sampled_model_density.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::init_scatterer_part(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/parameter_map.h:54:7: required from ‘cctbx::xray::parameter_map::parameter_map(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’ 54 | init_scatterer_part(scatterers); | ^~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0) [with A0 = boost::python::objects::reference_to_value, scitbx::af::trivial_accessor>&>; Value = cctbx::xray::parameter_map >; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<1>::apply::execute(PyObject*, t0) [with Holder = boost::python::objects::value_holder > >; ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; PyObject = _object; t0 = const scitbx::af::const_ref, scitbx::af::trivial_accessor>&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; Arity = boost::mpl::size, scitbx::af::trivial_accessor>&> >; Holder = boost::python::objects::value_holder > >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = cctbx::xray::parameter_map >; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/parameter_map.cpp:46:11: required from ‘static void cctbx::xray::boost_python::parameter_map_wrapper::wrap(const char*) [with XRayScattererType = cctbx::xray::scatterer<>]’ 45 | class_("parameter_map", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 | .def(init const &>(( | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 | arg("scatterers")))) | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/parameter_map.cpp:60:50: required from here 60 | parameter_map_wrapper >::wrap("parameter_map"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/parameter_map.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for(int i_sc=0; i_sc < scatterers.size(); ++i_sc) { | ~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/scatterer_flags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer_flags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/scattering_type_registry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/sampling_base.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_utils.h: In instantiation of ‘static void cctbx::xray::inelastic_form_factors::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::henke::table]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer.cpp:349:54: required from here 349 | inelastic_form_factors::set, | ^~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 426 | for (int i=0; i < scatterers.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_utils.h: In instantiation of ‘static void cctbx::xray::inelastic_form_factors::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::sasaki::table]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer.cpp:353:55: required from here 353 | inelastic_form_factors::set, | ^~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 426 | for (int i=0; i < scatterers.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/sigmaa.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/sigmaa.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 49 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_flags.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp: In static member function ‘static std::auto_ptr cctbx::xray::boost_python::{anonymous}::scattering_type_registry_wrappers::constructor_for_pickle(const boost::python::dict&, const boost::python::list&, const cctbx::xray::scattering_type_registry::unique_counts_t&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:55:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr self(new w_t); | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer_flags.cpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::xray::scatterer_flags; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer_flags.cpp:142:44: required from here 140 | class_ wrapper = scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | scatterer_flags, | ~~~~~~~~~~~~~~~~ 142 | return_internal_reference<> >::wrap("shared_scatterer_flags"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/xray/boost_python/structure_factors_direct.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/structure_factors_direct.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/sigmaa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/sigmaa.cpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/structure_factors_direct.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/structure_factors_direct.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/targets.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/targets.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/structure_factors_simple.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/structure_factors_simple.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/twin_targets.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/xray_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/xray_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/observations/boost_python/observations.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/observations/boost_python/observations.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_wrapper.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_components.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ 300 | tuple_mapping< | ^~~~~~~~~~~~~~ 301 | ContainerType, | ~~~~~~~~~~~~~~ 302 | variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_components.cpp:91:77: required from here 91 | tuple_mapping_variable_capacity *> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ 300 | tuple_mapping< | ^~~~~~~~~~~~~~ 301 | ContainerType, | ~~~~~~~~~~~~~~ 302 | variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_components.cpp:92:78: required from here 92 | tuple_mapping_variable_capacity *> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_indices.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/lookup_utils.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:14, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::shared cctbx::xray::twin_targets::twin_completion::get_free_model_selection(scitbx::af::const_ref >, const scitbx::af::const_ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:42:50: required from here 42 | .def("get_free_model_selection", &w_t::get_free_model_selection) | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:128:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 128 | CCTBX_ASSERT( index < flags.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:128:11: note: in expansion of macro ‘CCTBX_ASSERT’ 128 | CCTBX_ASSERT( index < flags.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:182:39: required from here 182 | .def("r_intensity_abs", &w_t::r_intensity_abs, | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:559:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:559:6: note: in expansion of macro ‘CCTBX_ASSERT’ 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:560:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:560:6: note: in expansion of macro ‘CCTBX_ASSERT’ 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:561:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:561:6: note: in expansion of macro ‘CCTBX_ASSERT’ 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:189:38: required from here 189 | .def("r_intensity_sq", &w_t::r_intensity_sq, | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:604:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:604:6: note: in expansion of macro ‘CCTBX_ASSERT’ 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:605:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:605:6: note: in expansion of macro ‘CCTBX_ASSERT’ 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:606:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:606:6: note: in expansion of macro ‘CCTBX_ASSERT’ 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:196:39: required from here 196 | .def("r_amplitude_abs", &w_t::r_amplitude_abs, | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:649:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:649:6: note: in expansion of macro ‘CCTBX_ASSERT’ 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:650:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:650:6: note: in expansion of macro ‘CCTBX_ASSERT’ 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:651:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:651:6: note: in expansion of macro ‘CCTBX_ASSERT’ 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:203:38: required from here 203 | .def("r_amplitude_sq", &w_t::r_amplitude_sq, | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:697:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:697:6: note: in expansion of macro ‘CCTBX_ASSERT’ 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:698:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:698:6: note: in expansion of macro ‘CCTBX_ASSERT’ 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:699:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:699:6: note: in expansion of macro ‘CCTBX_ASSERT’ 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const FloatType&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:263:45: required from here 263 | result = self.detwin_with_model_data(i_obs,sig_obs,f_model,twin_fraction); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:997:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:997:19: note: in expansion of macro ‘CCTBX_ASSERT’ 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1003:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1003:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1006:41: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1006:13: note: in expansion of macro ‘CCTBX_ASSERT’ 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1010:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1010:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const FloatType&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:275:45: required from here 275 | result = self.detwin_with_model_data(i_obs,sig_obs,f_model,twin_fraction); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:936:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:936:17: note: in expansion of macro ‘CCTBX_ASSERT’ 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:942:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:942:19: note: in expansion of macro ‘CCTBX_ASSERT’ 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:945:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:945:17: note: in expansion of macro ‘CCTBX_ASSERT’ 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:948:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:948:17: note: in expansion of macro ‘CCTBX_ASSERT’ 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘cctbx::xray::twin_targets::hemihedral_r_values::hemihedral_r_values(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value&>; Value = cctbx::xray::twin_targets::hemihedral_r_values; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<5>::apply::execute(PyObject*, t0, t1, t2, t3, t4) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&; t4 = const scitbx::mat3&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; W = cctbx::xray::twin_targets::hemihedral_r_values; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:169:13: required from here 168 | class_("hemihedral_r_values", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 | .def(init< | ~~~~^~~~~~ 170 | scitbx::af::const_ref< cctbx::miller::index<> > const&, // 1 obs indices | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | scitbx::af::const_ref< cctbx::miller::index<> > const&, // 2 calc indices | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | sgtbx::space_group const&, // 3 space group | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | bool const&, // 4 anomalous flag | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | scitbx::mat3 const& // 5 twin law | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 | > | ~ 176 | ((arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~ 177 | arg("hkl_calc"), | ~~~~~~~~~~~~~~~~ 178 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 179 | arg("anomalous_flag"), | ~~~~~~~~~~~~~~~~~~~~~~ 180 | arg("twin_law") | ~~~~~~~~~~~~~~~ 181 | ))) | ~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:544:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 544 | for (long ii=0;ii::refine(const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/quadrature.h:523:14: required from ‘scitbx::math::quadrature::gauss_legendre_engine::gauss_legendre_engine(const int&) [with FloatType = double]’ 523 | x = refine( start_guess ); | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1070:68: required from ‘cctbx::xray::twin_targets::single_twin_likelihood::single_twin_likelihood(const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const bool&, const bool&, const FloatType&, const FloatType&, const FloatType&, const int&) [with FloatType = double]’ 1070 | scitbx::math::quadrature::gauss_legendre_engine tmp_gle(n_quad_); | ^~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8, A9, A10, A11, A12, A13) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; A9 = boost::python::objects::reference_to_value; A10 = boost::python::objects::reference_to_value; A11 = boost::python::objects::reference_to_value; A12 = boost::python::objects::reference_to_value; A13 = boost::python::objects::reference_to_value; Value = cctbx::xray::twin_targets::single_twin_likelihood; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<14>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8, t9, t10, t11, t12, t13) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector14; PyObject = _object; t0 = const double&; t1 = const double&; t2 = const double&; t3 = const double&; t4 = const double&; t5 = const double&; t6 = const double&; t7 = const double&; t8 = const bool&; t9 = const bool&; t10 = const double&; t11 = const double&; t12 = const double&; t13 = const int&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector14; NArgs = boost::mpl::size >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init; W = cctbx::xray::twin_targets::single_twin_likelihood; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:343:14: required from here 342 | class_("single_twin_likelihood", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | .def(init< | ~~~~^~~~~~ 344 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 | bool const&, bool const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 | double const&, int const& | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 | > | ~ 352 | ((arg("i_obs1"), arg("s_obs1"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | arg("i_obs2"), arg("s_obs2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 | arg("f_calc1"), arg("f_calc2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 | arg("eps1"), arg("eps2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 | arg("centric1"),arg("centric2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 | arg("alpha"), arg("beta"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 | arg("twin_fraction"), arg("n_quad") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 | )) | ~~ 360 | ) | ~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/quadrature.h:546:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 546 | for (int ii=0;ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o cma_es/cma_es_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cma_es/cma_es_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/boost_python/compression.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘unsigned int dxtbx::boost_python::cbf_decompress(const char*, std::size_t, int*, std::size_t)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:124:50: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 124 | while ((j < packed_sz) && ((values - original) < values_sz)) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘void dxtbx::boost_python::rod_TY5_TY6_decompress(int*, const char*, const char*, int, int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:207:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 207 | for (size_t iy = 0; iy < slow; iy++) { | ~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:228:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 228 | for (int k = 0; k < nblock; k++) { | ~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:254:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 254 | for (int j = 0; j < nbit; j++) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:261:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 261 | for (int j = 0; j < BLOCKSIZE; j++) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:282:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 282 | for (int i = 0; i < nrest; i++) { | ~~^~~~~~~ g++ -o dxtbx/src/dxtbx/boost_python/flumpy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/boost_python/imageset_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘scitbx::af::flex_int dxtbx::boost_python::uncompress(const boost::python::api::object&, const int&, const int&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:183:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 183 | DXTBX_ASSERT(nn == (slow * fast)); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:183:5: note: in expansion of macro ‘DXTBX_ASSERT’ 183 | DXTBX_ASSERT(nn == (slow * fast)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘void dxtbx::boost_python::radial_average(scitbx::af::versa >&, scitbx::af::versa >&, const scitbx::vec2&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, double, double, const scitbx::vec2&, const scitbx::vec2&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:218:43: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 218 | for (std::size_t y = upper_left[1]; y < lower_right[1]; y++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:219:45: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 219 | for (std::size_t x = upper_left[0]; x < lower_right[0]; x++) { g++ -o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/format/boost_python/image_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = bool; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 247 | return get_buffer_specific(obj); | ~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/nexus_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 247 | return get_buffer_specific(obj); | ~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned char; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = signed char; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = float; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = double; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:138:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:140:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 140 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:166:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 166 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:168:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 168 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = long unsigned int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:191:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 191 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:193:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 193 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:215:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 215 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:217:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 217 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:113:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:115:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 115 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/masking/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/boost_python/ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp:10:1: warning: ‘typedef’ was ignored in this declaration 10 | typedef struct cbf_handle_struct; | ^~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:24, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:25: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:27: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/beam.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here 141 | image_wrapper("ImageBool"); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here 142 | image_wrapper("ImageInt"); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here 143 | image_wrapper("ImageDouble"); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = bool]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here 141 | image_wrapper("ImageBool"); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = int]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here 142 | image_wrapper("ImageInt"); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = double]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here 143 | image_wrapper("ImageDouble"); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/boost_python/ext.cc:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; g++ -o dxtbx/src/dxtbx/model/boost_python/crystal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_tuple(dxtbx::model::Beam&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:209:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 209 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_list(dxtbx::model::Beam&, boost::python::list)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:219:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 219 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In static member function ‘static boost::python::tuple dxtbx::model::boost_python::PolychromaticBeamPickleSuite::getstate(boost::python::api::object)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:302:32: warning: unused variable ‘beam’ [-Wunused-variable] 302 | const PolychromaticBeam &beam = | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In static member function ‘static void dxtbx::model::boost_python::PolychromaticBeamPickleSuite::setstate(boost::python::api::object, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:308:26: warning: unused variable ‘beam’ [-Wunused-variable] 308 | PolychromaticBeam &beam = boost::python::extract(obj)(); | ^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/goniometer_shadow_masking.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:30: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::ImageBuffer dxtbx::ImageSet::get_raw_data(std::size_t)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:651:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 651 | if (data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::Image dxtbx::ImageSet::get_raw_data_as_double(std::size_t)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1119:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1119 | if (double_raw_data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: At global scope: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1066:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1066 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1206:12: note: by ‘dxtbx::ImageSet dxtbx::ImageGrid::partial_set(std::size_t, std::size_t) const’ 1206 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, scitbx::af::int2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1142:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1142 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1142:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1142 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, scitbx::af::int2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1156:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1156 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1156:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1156 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: At global scope: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1066:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1066 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1477:12: note: by ‘dxtbx::ImageSet dxtbx::ImageSequence::partial_set(std::size_t, std::size_t) const’ 1477 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1241:23: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1241 | if (data.size() != scan->get_num_images()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1280:26: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1280 | if (indices.size() != scan->get_num_images()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘void dxtbx::ImageSequence::set_scan(const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1402:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1402 | if (scan->get_num_images() != size()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1418:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1418 | DXTBX_ASSERT(scan->get_num_images() == size()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1418:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1418 | DXTBX_ASSERT(scan->get_num_images() == size()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:469:56: required from here 469 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:471:55: required from here 471 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:473:53: required from here 473 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::BeamBase; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:250:56: required from here 250 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 251 | obj, | ~~~~ 252 | boost::python::extract(models[0])(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 | &ImageSetData::set_beam); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Detector; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:254:56: required from here 254 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 255 | obj, | ~~~~ 256 | boost::python::extract(models[1]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 | &ImageSetData::set_detector); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Goniometer; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:258:58: required from here 258 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 259 | obj, | ~~~~ 260 | boost::python::extract(models[2]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 | &ImageSetData::set_goniometer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Scan; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:262:52: required from here 262 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 263 | obj, | ~~~~ 264 | boost::python::extract(models[3]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 | &ImageSetData::set_scan); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_tuple(dxtbx::model::CrystalBase&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:119:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 119 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_list(dxtbx::model::CrystalBase&, boost::python::list)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:129:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 129 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_B_covariance_from_tuple(dxtbx::model::CrystalBase&, boost::python::api::object)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:141:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 141 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/detector.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/experiment.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/experiment_list.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:23: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:24: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:19: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘void dxtbx::model::boost_python::detector_detail::node_from_dict(boost::python::dict, dxtbx::model::Detector::Node*, boost::python::list, scitbx::af::ref)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:9: note: in expansion of macro ‘DXTBX_ASSERT’ 89 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:90:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 90 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:90:9: note: in expansion of macro ‘DXTBX_ASSERT’ 90 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:101:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 101 | for (std::size_t i = 0; i < boost::python::len(obj["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:125:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 125 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:135:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 135 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict, const dxtbx::format::Image&, const dxtbx::format::Image&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:159:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 159 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:169:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 169 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In static member function ‘static void dxtbx::model::boost_python::detector_detail::DetectorPickleSuite::copy_node(dxtbx::model::Detector::Node::pointer, boost::python::dict, boost::python::list)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:229:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 229 | for (std::size_t i = 0; i < boost::python::len(node["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment.cc:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:23: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:25: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:19: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment_list.h:23, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:23: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:25: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment_list.h:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList* dxtbx::model::boost_python::make_experiment_list(boost::python::api::object)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:30:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 30 | for (std::size_t i = 0; i < boost::python::len(items); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_setitem(dxtbx::model::ExperimentList&, int, dxtbx::model::Experiment)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:174:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 174 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::Experiment& dxtbx::model::boost_python::experiment_list_getitem(dxtbx::model::ExperimentList&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:184:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList dxtbx::model::boost_python::experiment_list_getitem_slice(const dxtbx::model::ExperimentList&, boost::python::slice)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:193:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 193 | for (std::size_t i = as.start; i < as.stop && i < self.size(); i += as.step) { | ~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_delitem(dxtbx::model::ExperimentList&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:203:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 203 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/goniometer.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_tuple(dxtbx::model::Goniometer&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:79:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 79 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_list(dxtbx::model::Goniometer&, boost::python::list)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/history.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/history.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/model_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/panel.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/parallax_correction.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/scan.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/goniometer.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:16: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc: In function ‘T* dxtbx::model::boost_python::from_dict(boost::python::dict) [with T = dxtbx::model::MultiAxisGoniometer]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:105:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 105 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:21: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc:14: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:22: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:19: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:19: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec2.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In static member function ‘static void dxtbx::model::boost_python::ScanPickleSuite::setstate(dxtbx::model::Scan&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:162:41: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 162 | DXTBX_ASSERT(len(properties_dict) == ncols); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:162:7: note: in expansion of macro ‘DXTBX_ASSERT’ 162 | DXTBX_ASSERT(len(properties_dict) == ncols); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::dict dxtbx::model::boost_python::MaptoPythonDict(dxtbx::model::ExpImgRangeMap)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:187:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | for (int k = 0; k < val.size(); ++k) { | ~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::list dxtbx::model::boost_python::get_valid_image_ranges(dxtbx::model::Scan&, std::string)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:374:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 374 | for (int k = 0; k < ranges.size(); ++k) { | ~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc:16: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:24: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘T* dxtbx::af::flex_table_suite::make_flex_table(boost::python::list) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1233:42: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:416:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 416 | for (std::size_t i = 0; i < len(columns); ++i) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::setitem_row(T&, typename T::size_type, boost::python::dict) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; typename T::size_type = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1252:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:525:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 525 | for (std::size_t i = 0; i < len(row); ++i) { | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘T dxtbx::af::flex_table_suite::select_cols_tuple(const T&, boost::python::tuple) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1265:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:747:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 747 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::set_selected_cols_tuple(T&, boost::python::tuple, const T&) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1269:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | .def("set_selected", &set_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1267 | .def("set_selected", &set_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 | .def("set_selected", &set_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 | .def("set_selected", &set_selected_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:838:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 838 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::del_selected_cols_tuple(T&, boost::python::tuple) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1273:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | .def("set_selected", &set_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1267 | .def("set_selected", &set_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 | .def("set_selected", &set_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 | .def("set_selected", &set_selected_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1270 | .def("del_selected", &del_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1271 | .def("del_selected", &del_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 | .def("del_selected", &del_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 | .def("del_selected", &del_selected_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:890:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 890 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/spectrum.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libcbf-private.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libcbf-private.so.0 cbflib_adaptbx/detectors/mar_adaptor.o cbflib_adaptbx/detectors/cbf_adaptor.o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o cbflib_adaptbx/detectors/buffer_based_service.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lhdf5_serial -lcbf Create symlinks for: 'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so.0'->'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so'->'lib/libcbf-private.so.0.0.1' g++ -o exe_dev/cbflib.tst_memory -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cbflib_adaptbx/detectors/tst_memory.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcbf -lcbf-private -lm -lhdf5_serial g++ -o exe_dev/cctbx.convert_ccp4_symop_lib -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/convert_ccp4_symop_lib.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.find_distances -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/find_distances.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ g++ -o exe_dev/cctbx.getting_started -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/getting_started.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; g++ -o exe_dev/cctbx.lattice_symmetry -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/lattice_symmetry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ g++ -o exe_dev/cctbx.sym_equiv_sites -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/sym_equiv_sites.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.sys_abs_equiv_space_groups -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/sys_abs_equiv_space_groups.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/spectrum.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ g++ -o fable/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/font_ucs_10x20.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/font_ucs_10x20.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/font_ucs_8x13.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/font_ucs_8x13.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/font_ucs_9x15.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/font_ucs_9x15.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/fonts_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/fonts_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string.hpp:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/str_ref.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/format.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp: In function ‘unsigned int fable::ext::get_code_stop(const boost::python::api::object&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp:24:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 24 | TBXX_ASSERT(stop <= len_code); | ~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp: In function ‘int fable::ext::floating_point_scan_after_dot(const boost::python::api::object&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp:71:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 71 | if (i < code_stop) { | ~~^~~~~~~~~~~ g++ -o gltbx/gl_defines_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_04_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_04_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:23: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h: In member function ‘void dxtbx::af::flex_table::insert_visitor::operator()(T&) const [with T = scitbx::af::shared >; VarientType = boost::variant, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:17: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:124:12: note: by argument 4 of type ‘const scitbx::vec2&’ to ‘void scitbx::af::shared_plain::insert(ElementType*, const size_type&, const ElementType&) [with ElementType = scitbx::vec2]’ declared here 124 | void insert(ElementType* pos, size_type const& n, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:50: note: ‘’ declared here 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h: In member function ‘void dxtbx::af::flex_table::insert_visitor::operator()(T&) const [with T = scitbx::af::shared >; VarientType = boost::variant, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:17: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:124:12: note: by argument 4 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::insert(ElementType*, const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 124 | void insert(ElementType* pos, size_type const& n, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:50: note: ‘’ declared here 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In function ‘void dxtbx::af::flex_table_suite::type_appender::operator()(U) [with U = scitbx::af::shared >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:905:54: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 905 | type_list.append(object(handle<>(PyObject_Type(object(a).ptr())))); | ^~~~~~~~~ In file included from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:11: /usr/include/boost/python/object_core.hpp:246:16: note: by argument 2 of type ‘const scitbx::vec2&’ to ‘boost::python::api::object::object(const T&) [with T = scitbx::vec2]’ declared here 246 | explicit object(T const& x) | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:904:30: note: ‘a’ declared here 904 | typename U::value_type a = typename U::value_type(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In function ‘void dxtbx::af::flex_table_suite::type_appender::operator()(U) [with U = scitbx::af::shared >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:905:54: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 905 | type_list.append(object(handle<>(PyObject_Type(object(a).ptr())))); | ^~~~~~~~~ /usr/include/boost/python/object_core.hpp:246:16: note: by argument 2 of type ‘const scitbx::vec3&’ to ‘boost::python::api::object::object(const T&) [with T = scitbx::vec3]’ declared here 246 | explicit object(T const& x) | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:904:30: note: ‘a’ declared here 904 | typename U::value_type a = typename U::value_type(); | ^ g++ -o gltbx/gl_defines_05_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_05_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_06_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_06_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_07_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_07_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/gl_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_04_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_04_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_05_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_05_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_06_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_06_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_07_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_07_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_08_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_08_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_09_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_09_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_10_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_10_bpl.cpp g++ -o gltbx/gl_functions_11_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_11_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_12_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_12_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_13_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_13_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_14_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_14_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_15_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_15_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_defines_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_defines_00_bpl.cpp g++ -o gltbx/glu_defines_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_defines_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/glu_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/quadrics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/quadrics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/util_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/util_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/viewer_utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/viewer_utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/ccp4_map/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/cif/boost_python/cif_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/cif/boost_python/cif_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/bruker.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/bruker.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_set_grid(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:178:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 178 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:213:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 213 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 215 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:216:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 216 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_box(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:245:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 245 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:278:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 278 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:280:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 280 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:281:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 281 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_p1_cell(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:311:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 311 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ g++ -o iotbx/detectors/bruker_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/bruker_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/detectors_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/detectors_ext.cpp g++ -o iotbx/detectors/image_divider.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/image_divider.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/dsn6/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/dsn6/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/misc/boost_python/dtrek_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/misc/boost_python/dtrek_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/misc/boost_python/scalepack_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/misc/boost_python/scalepack_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/batch_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/column.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/column_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.cpp: In member function ‘void iotbx::mtz::column::set_reals(const scitbx::af::const_ref&, const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.cpp:253:48: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.cpp:253:5: note: in expansion of macro ‘IOTBX_ASSERT’ 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/crystal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch_bpl.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::batch; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch_bpl.cpp:78:60: required from here 78 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 79 | "shared_batch"); | ~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o iotbx/mtz/crystal_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/dataset.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column_bpl.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::column; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column_bpl.cpp:76:60: required from here 76 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 77 | "shared_column"); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o iotbx/mtz/dataset_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/object.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset_bpl.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::dataset; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset_bpl.cpp:43:60: required from here 43 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 44 | "shared_dataset"); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal_bpl.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::crystal; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal_bpl.cpp:42:60: required from here 42 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 43 | "shared_crystal"); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/hendrickson_lattman.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/sym_equiv.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp: In member function ‘void iotbx::mtz::object::replace_miller_indices(const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:433:40: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:433:5: note: in expansion of macro ‘IOTBX_ASSERT’ 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:435:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 435 | for(int i_refl=0;i_refl iotbx::mtz::object::extract_integers(const scitbx::af::const_ref&, const char*) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:624:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 624 | for(int i=0;i iotbx::mtz::object::extract_reals(const scitbx::af::const_ref&, const char*) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:684:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 684 | for(int i=0;i&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/construct_hierarchy.cpp: In member function ‘iotbx::pdb::hierarchy::root iotbx::pdb::input::construct_hierarchy(bool, bool, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/construct_hierarchy.cpp:97:20: warning: variable ‘i_chain’ set but not used [-Wunused-but-set-variable=] 97 | for(unsigned i_chain=0;ch_r.next();i_chain++) { | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/construct_hierarchy.cpp: In member function ‘void iotbx::pdb::input_atoms_with_labels_generator::run(const iotbx::pdb::input&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/construct_hierarchy.cpp:222:20: warning: variable ‘i_chain’ set but not used [-Wunused-but-set-variable=] 222 | for(unsigned i_chain=0;ch_r.next();i_chain++) { | ^~~~~~~ g++ -o iotbx/pdb/hierarchy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_atom_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atom_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_atoms.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy.cpp: In member function ‘bool iotbx::pdb::hierarchy::chain::is_polymer_chain() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy.cpp:1795:26: warning: variable ‘n_water’ set but not used [-Wunused-but-set-variable=] 1795 | int n_polymer_res=0, n_water=0, n_unk = 0, n_non_polymer=0; | ^~~~~~~ g++ -o iotbx/pdb/hierarchy_atoms_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/namespace.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp:244:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp(const scitbx::af::const_ref&, int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp:250:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 250 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp: At global scope: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp:259:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 259 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp_for_occupancy_groups_simple(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp:263:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 263 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hierarchy_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_select.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_select.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:2: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_flags.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp: In function ‘void iotbx::pdb::hierarchy::atoms::bpl_wrap()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:84:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 84 | std::auto_ptr, | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/cassert:46, from /usr/include/boost/function/function_template.hpp:20, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:87:36: required from here 87 | class_ wa = wat::wrap("af_shared_atom"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom_with_labels; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:91:44: required from here 91 | class_ wawl = wawl_t::wrap("af_shared_atom_with_labels"); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_ext.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_ext.cpp:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hierarchy_write.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_write.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_write.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/namespace.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hybrid_36_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hybrid_36_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ gcc -o iotbx/pdb/hybrid_36_c.o -c -std=gnu17 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hybrid_36_c.c g++ -o iotbx/pdb/hybrid_36_cpp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hybrid_36_cpp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hybrid_36_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable iotbx/pdb/hybrid_36_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/input.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/input.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem.hpp:10, from iotbx/pdb/hybrid_36_fem.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/file_utils.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/input.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/input_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/input_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/input_write.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/input_write.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hybrid_36_fem -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread iotbx/pdb/hybrid_36_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o iotbx/pdb/overall_counts.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/overall_counts.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/rna_dna_atom_names_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/rna_dna_atom_names_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/write_utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/write_utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/write_utils.cpp: In destructor ‘iotbx::pdb::write_utils::fstream_open_close::~fstream_open_close()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/write_utils.cpp:42:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 42 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 43 | "Failure writing to file: \"" + file_name + "\""); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/write_utils.cpp:42:7: note: in C++11 destructors default to ‘noexcept’ g++ -o iotbx/pdb/xray_structure_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/xray_structure_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/shelx/shelx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/shelx/shelx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/wildcard_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/wildcard_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/xray_structure.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/xray_structure_bpl.cpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o iotbx/xplor/boost_python/xplor_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/xplor/boost_python/xplor_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libann_adaptor.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libann_adaptor.so.0 annlib_adaptbx/ann/ann_adaptor.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lann-cctbx Create symlinks for: 'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so.0'->'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so'->'lib/libann_adaptor.so.0.0.1' g++ -o lib/annlib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=annlib_ext.so.0 annlib_adaptbx/ann/boost_python/annlib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lann-cctbx -lann_adaptor -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so.0'->'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so'->'lib/annlib_ext.so.0.0.1' g++ -o lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_boost_thread_test_ext.so.0 boost_adaptbx/tests/boost_thread_test.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' 'lib/boost_adaptbx_boost_thread_test_ext.so.0'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' 'lib/boost_adaptbx_boost_thread_test_ext.so'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_breadth_first_search_ext.so.0 boost_adaptbx/graph/breadth_first_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_clustering_algorithm_ext.so.0 boost_adaptbx/graph/clustering_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_connected_component_algorithm_ext.so.0 boost_adaptbx/graph/connected_component_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' Create symlinks for: 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_ext.so.0 boost_adaptbx/graph/graph_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_graph_structure_comparison_ext.so.0 boost_adaptbx/graph/graph_structure_comparison_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_maximum_clique_ext.so.0 boost_adaptbx/graph/maximum_clique_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so.0'->'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so'->'lib/boost_adaptbx_graph_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_metric_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_metric_ext.so.0 boost_adaptbx/graph/metric_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so.0'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' Create symlinks for: 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_min_cut_max_flow_ext.so.0 boost_adaptbx/graph/min_cut_max_flow_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/boost_adaptbx_graph_utility_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_utility_ext.so.0 boost_adaptbx/graph/utility_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' g++ -o lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_python_streambuf_test_ext.so.0 boost_adaptbx/tests/python_streambuf_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so.0'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' g++ -o lib/boost_optional_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_optional_ext.so.0 boost_adaptbx/optional_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so.0'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' g++ -o lib/boost_python_hybrid_times_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_hybrid_times_ext.so.0 boost_adaptbx/hybrid_times_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so.0'->'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so'->'lib/boost_optional_ext.so.0.0.1' g++ -o lib/boost_python_meta_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_meta_ext.so.0 boost_adaptbx/meta_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer g++ -o lib/boost_rational_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_rational_ext.so.0 boost_adaptbx/rational_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so.0'->'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so'->'lib/boost_python_hybrid_times_ext.so.0.0.1' g++ -o lib/boost_tuple_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_tuple_ext.so.0 boost_adaptbx/tuple_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so.0'->'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so'->'lib/boost_rational_ext.so.0.0.1' g++ -o lib/cbflib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cbflib_ext.so.0 cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcbf-private -lcbf -lboost_thread -lboost_python314 -lm -lhdf5_serial g++ -o scitbx/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/utils.cpp Create symlinks for: 'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so.0'->'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so'->'lib/boost_python_meta_ext.so.0.0.1' Create symlinks for: 'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so.0'->'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so'->'lib/boost_tuple_ext.so.0.0.1' cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/boost_python/slice.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/slice.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/utils.cpp Create symlinks for: 'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so.0'->'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so'->'lib/cbflib_ext.so.0.0.1' cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/cma_es_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cma_es_ext.so.0 cma_es/cma_es_ext.o cma_es/cma/cmaes.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so.0'->'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so'->'lib/cma_es_ext.so.0.0.1' g++ -o lib/dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_ext.so.0 dxtbx/src/dxtbx/boost_python/ext.o dxtbx/src/dxtbx/boost_python/compression.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf Create symlinks for: 'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so.0'->'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so'->'lib/dxtbx_ext.so.0.0.1' g++ -o lib/dxtbx_format_image_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_image_ext.so.0 dxtbx/src/dxtbx/format/boost_python/image_ext.o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf -lhdf5_serial Create symlinks for: 'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so.0'->'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so'->'lib/dxtbx_format_image_ext.so.0.0.1' g++ -o lib/dxtbx_format_nexus_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_nexus_ext.so.0 dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf -lhdf5_serial g++ -o lib/fable_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=fable_ext.so.0 fable/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so.0'->'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so'->'lib/dxtbx_format_nexus_ext.so.0.0.1' g++ -o lib/iotbx_ccp4_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_ccp4_map_ext.so.0 iotbx/ccp4_map/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lccp4c -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so.0'->'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so'->'lib/fable_ext.so.0.0.1' g++ -o ucif/cifParser.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ucif/cifParser.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so.0'->'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so'->'lib/iotbx_ccp4_map_ext.so.0.0.1' g++ -o ucif/cifLexer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ucif/cifLexer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/iotbx_detectors_bruker_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_bruker_ext.so.0 iotbx/detectors/bruker_ext.o iotbx/detectors/bruker.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so.0'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' g++ -o lib/iotbx_detectors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_ext.so.0 iotbx/detectors/detectors_ext.o iotbx/detectors/image_divider.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/iotbx_dsn6_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dsn6_map_ext.so.0 iotbx/dsn6/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so.0'->'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so'->'lib/iotbx_dsn6_map_ext.so.0.0.1' g++ -o lib/iotbx_dtrek_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dtrek_ext.so.0 iotbx/misc/boost_python/dtrek_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so.0'->'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so'->'lib/iotbx_dtrek_ext.so.0.0.1' g++ -o lib/libccp4io.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libccp4io.so.0 ccp4io_adaptbx/fortran_call_stubs.o ccp4io_adaptbx/printf_wrappers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lm -lccp4c Create symlinks for: 'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so.0'->'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so'->'lib/libccp4io.so.0.0.1' g++ -o lib/libiotbx_mtz.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libiotbx_mtz.so.0 iotbx/mtz/object.o iotbx/mtz/crystal.o iotbx/mtz/dataset.o iotbx/mtz/column.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lccp4io -lccp4c -lm -lboost_thread Create symlinks for: 'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so.0'->'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so'->'lib/libiotbx_mtz.so.0.0.1' g++ -o lib/libiotbx_pdb.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libiotbx_pdb.so.0 iotbx/pdb/hybrid_36_c.o iotbx/pdb/hybrid_36_cpp.o iotbx/pdb/utils.o iotbx/pdb/write_utils.o iotbx/pdb/hierarchy.o iotbx/pdb/hierarchy_select.o iotbx/pdb/hierarchy_atoms.o iotbx/pdb/construct_hierarchy.o iotbx/pdb/overall_counts.o iotbx/pdb/hierarchy_write.o iotbx/pdb/atom_selection.o iotbx/pdb/input.o iotbx/pdb/input_write.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread Create symlinks for: 'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so.0'->'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so'->'lib/iotbx_detectors_ext.so.0.0.1' g++ -o lib/iotbx_scalepack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_scalepack_ext.so.0 iotbx/misc/boost_python/scalepack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm g++ -o lib/iotbx_shelx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_shelx_ext.so.0 iotbx/shelx/shelx_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/libscitbx_boost_python.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -shared -rdynamic -std=c++14 -Wl,-soname=libscitbx_boost_python.so.0 scitbx/boost_python/utils.o scitbx/boost_python/slice.o scitbx/array_family/boost_python/utils.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 Create symlinks for: 'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so.0'->'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so'->'lib/libscitbx_boost_python.so.0.0.1' g++ -o lib/cctbx_translation_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_translation_search_ext.so.0 cctbx/translation_search/boost_python/translation_search_ext.o cctbx/translation_search/boost_python/fast_nv1995.o cctbx/translation_search/boost_python/fast_terms.o cctbx/translation_search/boost_python/symmetry_flags.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so.0'->'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so'->'lib/iotbx_scalepack_ext.so.0.0.1' Create symlinks for: 'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so.0'->'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so'->'lib/libiotbx_pdb.so.0.0.1' g++ -o lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_xray_scattering_ext.so.0 cctbx/eltbx/boost_python/xray_scattering_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/iotbx_pdb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_ext.so.0 iotbx/pdb/ext.o iotbx/pdb/hybrid_36_bpl.o iotbx/pdb/common_residue_names_bpl.o iotbx/pdb/rna_dna_atom_names_bpl.o iotbx/pdb/input_bpl.o iotbx/pdb/xray_structure_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so.0'->'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so'->'lib/iotbx_shelx_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_attenuation_coefficient_ext.so.0 cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so.0'->'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so'->'lib/cctbx_translation_search_ext.so.0.0.1' g++ -o lib/cctbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_math_ext.so.0 cctbx/math/boost_python/math_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/iotbx_cif_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_cif_ext.so.0 iotbx/cif/boost_python/cif_ext.o ucif/cifParser.o ucif/cifLexer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm -lantlr3c Create symlinks for: 'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so.0'->'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so'->'lib/iotbx_pdb_ext.so.0.0.1' g++ -o lib/dxtbx_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_model_ext.so.0 dxtbx/src/dxtbx/model/boost_python/beam.o dxtbx/src/dxtbx/model/boost_python/spectrum.o dxtbx/src/dxtbx/model/boost_python/goniometer.o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o dxtbx/src/dxtbx/model/boost_python/panel.o dxtbx/src/dxtbx/model/boost_python/detector.o dxtbx/src/dxtbx/model/boost_python/scan.o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o dxtbx/src/dxtbx/model/boost_python/crystal.o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o dxtbx/src/dxtbx/model/boost_python/history.o dxtbx/src/dxtbx/model/boost_python/experiment.o dxtbx/src/dxtbx/model/boost_python/experiment_list.o dxtbx/src/dxtbx/model/boost_python/model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5_serial Create symlinks for: 'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so.0'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_asu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_asu_ext.so.0 cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' g++ -o lib/gltbx_quadrics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_quadrics_ext.so.0 gltbx/quadrics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so.0'->'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so'->'lib/cctbx_math_ext.so.0.0.1' g++ -o lib/cctbx_emma_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_emma_ext.so.0 cctbx/boost_python/emma_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so.0'->'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so'->'lib/iotbx_cif_ext.so.0.0.1' g++ -o lib/cctbx_anharmonic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_anharmonic_ext.so.0 cctbx/adptbx/boost_python/anharmonic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so.0'->'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so'->'lib/gltbx_quadrics_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_chemical_elements_ext.so.0 cctbx/eltbx/boost_python/chemical_elements_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so.0'->'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so'->'lib/cctbx_emma_ext.so.0.0.1' g++ -o lib/dxtbx_imageset_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_imageset_ext.so.0 dxtbx/src/dxtbx/boost_python/imageset_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf -lhdf5_serial -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5_serial Create symlinks for: 'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so.0'->'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so'->'lib/cctbx_anharmonic_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so.0'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_bcr_bcr_ext.so.0 cctbx/maptbx/bcr/bcr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_xray_observations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_observations_ext.so.0 cctbx/xray/observations/boost_python/observations.o cctbx/xray/observations/boost_python/observations_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so.0'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' g++ -o lib/cctbx_adptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adptbx_ext.so.0 cctbx/adptbx/boost_python/adptbx_ext.o cctbx/adptbx/boost_python/hirshfeld.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so.0'->'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so'->'lib/cctbx_adptbx_ext.so.0.0.1' g++ -o lib/determine_unit_cell_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=determine_unit_cell_ext.so.0 cctbx/uctbx/determine_unit_cell/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so.0'->'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so'->'lib/cctbx_xray_observations_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so.0'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' g++ -o lib/cctbx_miller_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_miller_ext.so.0 cctbx/miller/boost_python/miller_ext.o cctbx/miller/boost_python/asu.o cctbx/miller/boost_python/bins.o cctbx/miller/boost_python/change_basis.o cctbx/miller/boost_python/expand_to_p1.o cctbx/miller/boost_python/index_generator.o cctbx/miller/boost_python/index_span.o cctbx/miller/boost_python/match_bijvoet_mates.o cctbx/miller/boost_python/match_indices.o cctbx/miller/boost_python/match_multi_indices.o cctbx/miller/boost_python/merge_equivalents.o cctbx/miller/boost_python/phase_integrator.o cctbx/miller/boost_python/phase_transfer.o cctbx/miller/boost_python/sym_equiv.o cctbx/miller/boost_python/f_calc_map.o cctbx/miller/boost_python/lookup_utils.o cctbx/miller/boost_python/amplitude_normalisation.o cctbx/miller/boost_python/randomize_amplitude_and_phase.o cctbx/miller/boost_python/slices.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_statistics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_statistics_ext.so.0 cctbx/boost_python/statistics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so.0'->'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so'->'lib/cctbx_statistics_ext.so.0.0.1' g++ -o lib/cctbx_uctbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_uctbx_ext.so.0 cctbx/uctbx/boost_python/uctbx_ext.o cctbx/uctbx/boost_python/fast_minimum_reduction.o cctbx/uctbx/boost_python/niggli_reduction.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so.0'->'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so'->'lib/determine_unit_cell_ext.so.0.0.1' g++ -o lib/iotbx_mtz_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_mtz_ext.so.0 iotbx/mtz/ext.o iotbx/mtz/object_bpl.o iotbx/mtz/crystal_bpl.o iotbx/mtz/dataset_bpl.o iotbx/mtz/column_bpl.o iotbx/mtz/batch_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_mtz -lcctbx -lccp4io -lccp4c -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so.0'->'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so'->'lib/cctbx_uctbx_ext.so.0.0.1' g++ -o lib/dxtbx_masking_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_masking_ext.so.0 dxtbx/src/dxtbx/masking/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5_serial Create symlinks for: 'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so.0'->'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so'->'lib/dxtbx_imageset_ext.so.0.0.1' Create symlinks for: 'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so.0'->'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so'->'lib/dxtbx_masking_ext.so.0.0.1' g++ -o lib/cctbx_merging_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_merging_ext.so.0 cctbx/merging/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_icsd_radii_ext.so.0 cctbx/eltbx/boost_python/icsd_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so.0'->'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so'->'lib/cctbx_miller_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so.0'->'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so'->'lib/cctbx_merging_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so.0'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' g++ -o lib/cctbx_symmetry_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_symmetry_search_ext.so.0 cctbx/symmetry_search/boost_python/symmetry_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/gltbx_glu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_glu_ext.so.0 gltbx/glu_ext.o gltbx/glu_defines_00_bpl.o gltbx/glu_defines_01_bpl.o gltbx/glu_functions_00_bpl.o gltbx/glu_functions_01_bpl.o gltbx/glu_functions_02_bpl.o gltbx/glu_functions_03_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm g++ -o lib/cctbx_eltbx_sasaki_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_sasaki_ext.so.0 cctbx/eltbx/boost_python/sasaki_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so.0'->'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so'->'lib/cctbx_symmetry_search_ext.so.0.0.1' Create symlinks for: 'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so.0'->'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so'->'lib/iotbx_mtz_ext.so.0.0.1' g++ -o lib/gltbx_viewer_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_viewer_utils_ext.so.0 gltbx/viewer_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so.0'->'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so'->'lib/gltbx_glu_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_wavelengths_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_wavelengths_ext.so.0 cctbx/eltbx/boost_python/wavelengths_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_dmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_dmtbx_ext.so.0 cctbx/dmtbx/boost_python/dmtbx_ext.o cctbx/dmtbx/boost_python/triplet_phase_relation.o cctbx/dmtbx/boost_python/triplet_generator.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so.0'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' g++ -o lib/gltbx_gl_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_gl_ext.so.0 gltbx/gl_ext.o gltbx/gl_defines_00_bpl.o gltbx/gl_defines_01_bpl.o gltbx/gl_defines_02_bpl.o gltbx/gl_defines_03_bpl.o gltbx/gl_defines_04_bpl.o gltbx/gl_defines_05_bpl.o gltbx/gl_defines_06_bpl.o gltbx/gl_defines_07_bpl.o gltbx/gl_functions_00_bpl.o gltbx/gl_functions_01_bpl.o gltbx/gl_functions_02_bpl.o gltbx/gl_functions_03_bpl.o gltbx/gl_functions_04_bpl.o gltbx/gl_functions_05_bpl.o gltbx/gl_functions_06_bpl.o gltbx/gl_functions_07_bpl.o gltbx/gl_functions_08_bpl.o gltbx/gl_functions_09_bpl.o gltbx/gl_functions_10_bpl.o gltbx/gl_functions_11_bpl.o gltbx/gl_functions_12_bpl.o gltbx/gl_functions_13_bpl.o gltbx/gl_functions_14_bpl.o gltbx/gl_functions_15_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so.0'->'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so'->'lib/gltbx_viewer_utils_ext.so.0.0.1' g++ -o lib/cctbx_multipolar_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_multipolar_ext.so.0 cctbx/multipolar/aspherical_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so.0'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_covalent_radii_ext.so.0 cctbx/eltbx/boost_python/covalent_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so.0'->'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so'->'lib/dxtbx_model_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so.0'->'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so'->'lib/cctbx_multipolar_ext.so.0.0.1' g++ -o lib/iotbx_pdb_hierarchy_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_hierarchy_ext.so.0 iotbx/pdb/hierarchy_ext.o iotbx/pdb/hierarchy_atom_bpl.o iotbx/pdb/hierarchy_atoms_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so.0'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so.0'->'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so'->'lib/cctbx_dmtbx_ext.so.0.0.1' g++ -o lib/cctbx_xray_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_ext.so.0 cctbx/xray/boost_python/xray_ext.o cctbx/xray/boost_python/conversions.o cctbx/xray/boost_python/gradient_flags.o cctbx/xray/boost_python/gradients_direct.o cctbx/xray/boost_python/each_hkl_gradients_direct.o cctbx/xray/boost_python/fast_gradients.o cctbx/xray/boost_python/minimization.o cctbx/xray/boost_python/scatterer_flags.o cctbx/xray/boost_python/scatterer.o cctbx/xray/boost_python/scattering_type_registry.o cctbx/xray/boost_python/sampling_base.o cctbx/xray/boost_python/sampled_model_density.o cctbx/xray/boost_python/structure_factors_direct.o cctbx/xray/boost_python/structure_factors_simple.o cctbx/xray/boost_python/curvatures_simple.o cctbx/xray/boost_python/targets.o cctbx/xray/boost_python/f_model_bpl.o cctbx/xray/boost_python/twin_targets.o cctbx/xray/boost_python/grouped_data.o cctbx/xray/boost_python/parameter_map.o cctbx/xray/boost_python/twin_components.o cctbx/xray/boost_python/extinction.o cctbx/xray/boost_python/sigmaa.o cctbx/xray/targets/shelxl_wght_ls_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_masks_ext.so.0 cctbx/masks/boost_python/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/dxtbx_flumpy.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_flumpy.so.0 dxtbx/src/dxtbx/boost_python/flumpy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5_serial g++ -o lib/cctbx_asymmetric_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_asymmetric_map_ext.so.0 cctbx/maptbx/asymmetric_map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so.0'->'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so'->'lib/gltbx_gl_ext.so.0.0.1' g++ -o lib/cctbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_array_family_flex_ext.so.0 cctbx/array_family/boost_python/flex_ext.o cctbx/array_family/boost_python/flex_hendrickson_lattman.o cctbx/array_family/boost_python/flex_miller_index.o cctbx/array_family/boost_python/flex_xray_scatterer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so.0'->'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so'->'lib/cctbx_masks_ext.so.0.0.1' g++ -o lib/cctbx_geometry_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_ext.so.0 cctbx/geometry/boost_python/geometry_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so.0'->'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so'->'lib/cctbx_geometry_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so.0'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' g++ -o lib/cctbx_orientation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_orientation_ext.so.0 cctbx/boost_python/orientation_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/gltbx_fonts_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_fonts_ext.so.0 gltbx/fonts_ext.o gltbx/font_ucs_8x13.o gltbx/font_ucs_9x15.o gltbx/font_ucs_10x20.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so.0'->'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so'->'lib/dxtbx_flumpy.so.0.0.1' g++ -o lib/cctbx_french_wilson_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_french_wilson_ext.so.0 cctbx/boost_python/french_wilson_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so.0'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so.0'->'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so'->'lib/cctbx_orientation_ext.so.0.0.1' g++ -o lib/cctbx_adp_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adp_restraints_ext.so.0 cctbx/adp_restraints/adp_restraints_bpl.o cctbx/adp_restraints/adp_restraints_ext.o cctbx/adp_restraints/rigid_bond_bpl.o cctbx/adp_restraints/rigu_bpl.o cctbx/adp_restraints/adp_similarity_bpl.o cctbx/adp_restraints/isotropic_adp_bpl.o cctbx/adp_restraints/aniso_restraints_bpl.o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_geometry_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_restraints_ext.so.0 cctbx/geometry_restraints/geometry_restraints_ext.o cctbx/geometry_restraints/bond_bpl.o cctbx/geometry_restraints/bond_similarity_bpl.o cctbx/geometry_restraints/bond_sorted_bpl.o cctbx/geometry_restraints/nonbonded_bpl.o cctbx/geometry_restraints/nonbonded_sorted_bpl.o cctbx/geometry_restraints/angle_bpl.o cctbx/geometry_restraints/dihedral_bpl.o cctbx/geometry_restraints/chirality_bpl.o cctbx/geometry_restraints/planarity_bpl.o cctbx/geometry_restraints/parallelity_bpl.o cctbx/geometry_restraints/motif_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so.0'->'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so'->'lib/cctbx_french_wilson_ext.so.0.0.1' g++ -o lib/cctbx_crystal_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_crystal_ext.so.0 cctbx/crystal/crystal_ext.o cctbx/crystal/asu_clusters_bpl.o cctbx/crystal/close_packing_bpl.o cctbx/crystal/coordination_sequences_bpl.o cctbx/crystal/direct_space_asu_bpl.o cctbx/crystal/incremental_pairs_bpl.o cctbx/crystal/neighbors_bpl.o cctbx/crystal/pair_tables_bpl.o cctbx/crystal/site_cluster_analysis_bpl.o cctbx/crystal/symmetry_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so.0'->'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so'->'lib/gltbx_fonts_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_ext.so.0 cctbx/sgtbx/boost_python/sgtbx_ext.o cctbx/sgtbx/boost_python/brick.o cctbx/sgtbx/boost_python/change_of_basis.o cctbx/sgtbx/boost_python/find_affine.o cctbx/sgtbx/boost_python/lattice_symmetry.o cctbx/sgtbx/boost_python/phase_info.o cctbx/sgtbx/boost_python/reciprocal_space_asu.o cctbx/sgtbx/boost_python/rot_mx.o cctbx/sgtbx/boost_python/rt_mx.o cctbx/sgtbx/boost_python/search_symmetry.o cctbx/sgtbx/boost_python/seminvariant.o cctbx/sgtbx/boost_python/site_symmetry.o cctbx/sgtbx/boost_python/space_group.o cctbx/sgtbx/boost_python/space_group_type.o cctbx/sgtbx/boost_python/sym_equiv_sites.o cctbx/sgtbx/boost_python/symbols.o cctbx/sgtbx/boost_python/tensor_rank_2.o cctbx/sgtbx/boost_python/tensors.o cctbx/sgtbx/boost_python/tr_vec.o cctbx/sgtbx/boost_python/wyckoff.o cctbx/sgtbx/boost_python/select_generators.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so.0'->'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so'->'lib/cctbx_array_family_flex_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_henke_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_henke_ext.so.0 cctbx/eltbx/boost_python/henke_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so.0'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' g++ -o lib/cctbx_covariance_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_covariance_ext.so.0 cctbx/covariance/boost_python/covariance_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so.0'->'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so'->'lib/cctbx_xray_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so.0'->'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so'->'lib/cctbx_covariance_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so.0'->'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so'->'lib/cctbx_adp_restraints_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so.0'->'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so'->'lib/cctbx_crystal_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_neutron_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_neutron_ext.so.0 cctbx/eltbx/boost_python/neutron_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so.0'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_fp_fdp_ext.so.0 cctbx/eltbx/boost_python/fp_fdp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/gltbx_util_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_util_ext.so.0 gltbx/util_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm g++ -o lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_tiny_pse_ext.so.0 cctbx/eltbx/boost_python/tiny_pse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_maptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_ext.so.0 cctbx/maptbx/boost_python/maptbx_ext.o cctbx/maptbx/boost_python/grid_indices_around_sites.o cctbx/maptbx/boost_python/grid_tags.o cctbx/maptbx/boost_python/gridding.o cctbx/maptbx/boost_python/misc.o cctbx/maptbx/boost_python/peak_search.o cctbx/maptbx/boost_python/pymol_interface.o cctbx/maptbx/boost_python/statistics.o cctbx/maptbx/boost_python/structure_factors.o cctbx/maptbx/boost_python/coordinate_transformers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so.0'->'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so'->'lib/gltbx_util_ext.so.0.0.1' g++ -o lib/iotbx_wildcard_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_wildcard_ext.so.0 iotbx/wildcard_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so.0'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' g++ -o lib/iotbx_xplor_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_xplor_ext.so.0 iotbx/xplor/boost_python/xplor_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_xplor -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so.0'->'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so'->'lib/iotbx_wildcard_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so.0'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' g++ -o spotfinder/dxtbx_toolbox/libdistl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/dxtbx_toolbox/libdistl.cpp g++ -o spotfinder/dxtbx_toolbox/distl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/dxtbx_toolbox/distl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so.0'->'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so'->'lib/iotbx_xplor_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/spot.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/spot.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so.0'->'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so'->'lib/cctbx_sgtbx_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/libdistl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/libdistl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so.0'->'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so'->'lib/cctbx_maptbx_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/hough.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/hough.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so.0'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/distl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/distl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/spotfilter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/spotfilter.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/masks/atom_mask.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/masks/atom_mask.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/decompose.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/decompose.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/dps_core/dps_core.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/dps_core/dps_core.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/dps_core/directional_fft.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/dps_core/directional_fft.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/dps_core/direction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/dps_core/direction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/indexing_api/indexing_api.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/indexing_api.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libmmtbx_tls.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libmmtbx_tls.so.0 mmtbx/tls/decompose.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lm Create symlinks for: 'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so.0'->'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so'->'lib/libmmtbx_tls.so.0.0.1' g++ -o lib/libspotfinder.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libspotfinder.so.0 spotfinder/core_toolbox/spot.o spotfinder/core_toolbox/libdistl.o spotfinder/core_toolbox/hough.o spotfinder/core_toolbox/distl.o spotfinder/core_toolbox/spotfilter.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lann-cctbx -lomptbx -lm g++ -o rstbx/diffraction/ewald_sphere.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/ewald_sphere.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so.0'->'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so'->'lib/libspotfinder.so.0.0.1' g++ -o lib/libdxtbxspotfinder.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libdxtbxspotfinder.so.0 spotfinder/dxtbx_toolbox/libdistl.o spotfinder/dxtbx_toolbox/distl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lspotfinder -lann-cctbx -lomptbx -lm g++ -o rstbx/diffraction/partial_spot_position_partial_H.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/partial_spot_position_partial_H.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so.0'->'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so'->'lib/libdxtbxspotfinder.so.0.0.1' g++ -o scitbx/minpack/raw.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/raw.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ gcc -o scitbx/slatec/lib_c.o -c -std=gnu17 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/slatec/lib_c.c g++ -o lib/libscitbx_slatec.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libscitbx_slatec.so.0 scitbx/slatec/lib_c.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lm Create symlinks for: 'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so.0'->'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so'->'lib/libscitbx_slatec.so.0.0.1' g++ -o smtbx/refinement/constraints/affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/occupancy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/occupancy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/librstbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=librstbx.so.0 rstbx/dps_core/dps_core.o rstbx/dps_core/directional_fft.o rstbx/dps_core/direction.o rstbx/indexing_api/indexing_api.o rstbx/diffraction/ewald_sphere.o rstbx/diffraction/partial_spot_position_partial_H.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lcctbx -lm Create symlinks for: 'lib/librstbx.so.0.0.1' 'lib/librstbx.so.0'->'lib/librstbx.so.0.0.1' 'lib/librstbx.so'->'lib/librstbx.so.0.0.1' g++ -o lib/libscitbx_minpack.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libscitbx_minpack.so.0 scitbx/minpack/raw.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lm g++ -o smtbx/refinement/constraints/reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so.0'->'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so'->'lib/libscitbx_minpack.so.0.0.1' g++ -o smtbx/refinement/constraints/rigid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/rigid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/same_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/same_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/scaled_adp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/scaled_adp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/shared.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/shared.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/symmetry_equivalent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/u_eq_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/u_iso_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libmmtbx_masks.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libmmtbx_masks.so.0 mmtbx/masks/atom_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm Create symlinks for: 'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so.0'->'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so'->'lib/libmmtbx_masks.so.0.0.1' g++ -o xcif/data_model.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/data_model.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/tokenizer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/tokenizer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/numeric.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/numeric.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/alignment/alignment_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/alignment/alignment_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/building/loop_closure/ccd_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/building/loop_closure/ccd_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/bulk_solvent/bulk_solvent_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/bulk_solvent/bulk_solvent_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libxcif.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libxcif.so.0 xcif/data_model.o xcif/tokenizer.o xcif/numeric.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread Create symlinks for: 'lib/libxcif.so.0.0.1' 'lib/libxcif.so.0'->'lib/libxcif.so.0.0.1' 'lib/libxcif.so'->'lib/libxcif.so.0.0.1' g++ -o mmtbx/bulk_solvent/bulk_solvent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/bulk_solvent/bulk_solvent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/den/boost_python/den_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/den/boost_python/den_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libsmtbx_refinement_constraints.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libsmtbx_refinement_constraints.so.0 smtbx/refinement/constraints/affine.o smtbx/refinement/constraints/geometrical_hydrogens.o smtbx/refinement/constraints/occupancy.o smtbx/refinement/constraints/reparametrisation.o smtbx/refinement/constraints/rigid.o smtbx/refinement/constraints/same_group.o smtbx/refinement/constraints/scaled_adp.o smtbx/refinement/constraints/shared.o smtbx/refinement/constraints/special_position.o smtbx/refinement/constraints/symmetry_equivalent.o smtbx/refinement/constraints/u_eq_dependent_u_iso.o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread Create symlinks for: 'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so.0'->'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so'->'lib/libsmtbx_refinement_constraints.so.0.0.1' g++ -o mmtbx/secondary_structure/dssp_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/secondary_structure/dssp_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/den/den.h:2, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/den/boost_python/den_ext.cpp:12: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::den::den_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/den/boost_python/den_ext.cpp:53:78: required from here 53 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 54 | "shared_den_simple_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/mmtbx_alignment_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_alignment_ext.so.0 mmtbx/alignment/alignment_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so.0'->'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so'->'lib/mmtbx_alignment_ext.so.0.0.1' g++ -o mmtbx/dynamics/dynamics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/dynamics/dynamics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_dssp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dssp_ext.so.0 mmtbx/secondary_structure/dssp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so.0'->'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so'->'lib/mmtbx_dssp_ext.so.0.0.1' g++ -o mmtbx/f_model/f_model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/f_model/f_model_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/geometry/boost_python/asa_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/asa_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_building_loop_closure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_building_loop_closure_ext.so.0 mmtbx/building/loop_closure/ccd_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -liotbx_pdb -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so.0'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/clash_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/clash_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_dynamics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dynamics_ext.so.0 mmtbx/dynamics/dynamics_ext.o mmtbx/dynamics/dynamics.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so.0'->'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so'->'lib/mmtbx_dynamics_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/indexing_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/indexing_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_den_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_den_restraints_ext.so.0 mmtbx/den/boost_python/den_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so.0'->'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so'->'lib/mmtbx_den_restraints_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/primitive_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/primitive_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/asa_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/extract.hpp:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/indexing_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/clash_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_geometry_primitive_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_primitive_ext.so.0 mmtbx/geometry/boost_python/primitive_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so.0'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/shared_types_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/shared_types_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/shared_types_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_f_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_f_model_ext.so.0 mmtbx/f_model/f_model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so.0'->'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so'->'lib/mmtbx_f_model_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/sphere_surface_sampling_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_shared_types_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_shared_types_ext.so.0 mmtbx/geometry/boost_python/shared_types_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so.0'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' g++ -o mmtbx/hydrogens/hydrogens_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/hydrogens/hydrogens_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_bulk_solvent_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_bulk_solvent_ext.so.0 mmtbx/bulk_solvent/bulk_solvent_ext.o mmtbx/bulk_solvent/bulk_solvent.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so.0'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' g++ -o mmtbx/masks/masks_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/masks/masks_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_indexing_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_indexing_ext.so.0 mmtbx/geometry/boost_python/indexing_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so.0'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/max_lik/max_lik_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_sphere_surface_sampling_ext.so.0 mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/max_lik/max_lik.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_clash_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_clash_ext.so.0 mmtbx/geometry/boost_python/clash_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so.0'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' g++ -o mmtbx/bulk_solvent/mosaic_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/bulk_solvent/mosaic_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_hydrogens_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_hydrogens_ext.so.0 mmtbx/hydrogens/hydrogens_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so.0'->'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so'->'lib/mmtbx_hydrogens_ext.so.0.0.1' g++ -o mmtbx/ncs/cartesian_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/ncs/cartesian_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/ncs/tncs_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/ncs/tncs_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_masks_ext.so.0 mmtbx/masks/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_masks -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so.0'->'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so'->'lib/mmtbx_masks_ext.so.0.0.1' g++ -o mmtbx/pair_interaction/interaction_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/pair_interaction/interaction_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ncs_cartesian_restraints_ext.so.0 mmtbx/ncs/cartesian_restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' g++ -o mmtbx/probe/boost_python/probe_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/probe/boost_python/probe_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_asa_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_asa_ext.so.0 mmtbx/geometry/boost_python/asa_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_mosaic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_mosaic_ext.so.0 mmtbx/bulk_solvent/mosaic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_max_lik_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_max_lik_ext.so.0 mmtbx/max_lik/max_lik_ext.o mmtbx/max_lik/max_lik.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so.0'->'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so'->'lib/mmtbx_mosaic_ext.so.0.0.1' g++ -o mmtbx/probe/Scoring.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/probe/Scoring.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so.0'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' Create symlinks for: 'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so.0'->'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so'->'lib/mmtbx_max_lik_ext.so.0.0.1' g++ -o mmtbx/probe/DotSpheres.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/probe/DotSpheres.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/probe/SpatialQuery.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/probe/SpatialQuery.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/reduce/boost_python/reduce_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/reduce/boost_python/reduce_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/ramachandran.h:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i mmtbx::geometry_restraints::target_phi_psi(const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const phi_psi_proxy&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/ramachandran.h:314:35: required from here 314 | r = target_phi_psi(general_table, sites_cart, proxy);} | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/ramachandran.h:269:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 269 | for(int i=0; i, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 284 | for(int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so.0'->'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so'->'lib/mmtbx_ncs_ext.so.0.0.1' g++ -o mmtbx/reduce/PositionReturn.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/reduce/PositionReturn.cpp In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/format/parsing.hpp:21, from /usr/include/boost/format.hpp:50, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral.h:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::phi_psi_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:52:75: required from here 52 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 53 | "shared_phi_psi_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_pair_interaction_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_pair_interaction_ext.so.0 mmtbx/pair_interaction/interaction_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so.0'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' g++ -o mmtbx/reduce/InteractionGraph.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/reduce/InteractionGraph.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ar rc probe/lib/libprobelib.a mmtbx/probe/Scoring.o mmtbx/probe/DotSpheres.o mmtbx/probe/SpatialQuery.o ranlib probe/lib/libprobelib.a g++ -o mmtbx/reduce/Optimizers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/reduce/Optimizers.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/reference_coordinate.h:2, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = mmtbx::geometry_restraints::reference_coordinate_proxy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:80:41: required from here 80 | cctbx::geometry_restraints::shared_proxy_remove, ( | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::reference_coordinate_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:61:25: required from here 61 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 62 | "shared_reference_coordinate_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o mmtbx/rotamer/fit_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/rotamer/fit_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_ramachandran_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ramachandran_restraints_ext.so.0 mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so.0'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' g++ -o mmtbx/rsr/rsr_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/rsr/rsr_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_probe_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_probe_ext.so.0 mmtbx/probe/boost_python/probe_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Lprobe/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/probe/lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so.0'->'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so'->'lib/mmtbx_probe_ext.so.0.0.1' g++ -o mmtbx/scaling/scaling_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/scaling/scaling_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_reference_coordinate_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reference_coordinate_ext.so.0 mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so.0'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' g++ -o mmtbx/scaling/twinning_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/scaling/twinning_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ar rc reduce/lib/libreduce2lib.a mmtbx/reduce/PositionReturn.o mmtbx/reduce/InteractionGraph.o mmtbx/reduce/Optimizers.o ranlib reduce/lib/libreduce2lib.a g++ -o mmtbx/scaling/relative_scaling_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/scaling/relative_scaling_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_rotamer_fit_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rotamer_fit_ext.so.0 mmtbx/rotamer/fit_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so.0'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' g++ -o mmtbx/scaling/outlier_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/scaling/outlier_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_rsr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rsr_ext.so.0 mmtbx/rsr/rsr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so.0'->'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so'->'lib/mmtbx_rsr_ext.so.0.0.1' g++ -o mmtbx/secondary_structure/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/secondary_structure/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/decompose_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/decompose_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_secondary_structure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_secondary_structure_ext.so.0 mmtbx/secondary_structure/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so.0'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' g++ -o mmtbx/tls/tls_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/tls_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_reduce_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reduce_ext.so.0 mmtbx/reduce/boost_python/reduce_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Lreduce/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/reduce/lib -Lprobe/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/probe/lib -lreduce2lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o mmtbx/tls/optimise_amplitudes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/optimise_amplitudes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so.0'->'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so'->'lib/mmtbx_reduce_ext.so.0.0.1' g++ -o mmtbx/tls/optimise_amplitudes_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/optimise_amplitudes_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_tls_decompose_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_decompose_ext.so.0 mmtbx/tls/decompose_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so.0'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' g++ -o mmtbx/tls/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/utils/utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/utils/utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_scaling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_scaling_ext.so.0 mmtbx/scaling/scaling_ext.o mmtbx/scaling/twinning_bpl.o mmtbx/scaling/relative_scaling_bpl.o mmtbx/scaling/outlier_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so.0'->'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so'->'lib/mmtbx_scaling_ext.so.0.0.1' g++ -o mmtbx/validation/ramachandran/rama_eval_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/validation/ramachandran/rama_eval_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_optimise_amplitudes_ext.so.0 mmtbx/tls/optimise_amplitudes.o mmtbx/tls/optimise_amplitudes_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' g++ -o omptbx/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/omptbx/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/omptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=omptbx_ext.so.0 omptbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lomptbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so.0'->'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so'->'lib/omptbx_ext.so.0.0.1' g++ -o rstbx/array_family/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/array_family/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/array_family/flex_rstbx_arrays.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/array_family/flex_rstbx_arrays.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/bandpass/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/bandpass/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/src -Irstbx/bandpass/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h: In constructor ‘rstbx::bandpass::active_area_filter::active_area_filter(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h:100:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i < tiles.size()/4; ++i){ | ~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h: In member function ‘bool rstbx::bandpass::active_area_filter::operator()(rstbx::bandpass::vec3, const int&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h:126:39: warning: comparison of integer expressions of different signedness: ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h:126:9: note: in expansion of macro ‘SCITBX_ASSERT’ 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/subpixel_joint_model.h: In member function ‘void rstbx::bandpass::subpixel_joint_model::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/subpixel_joint_model.h:26:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 26 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/subpixel_joint_model.h:31:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 31 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::prescreen_indices(const double&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:46:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared rstbx::bandpass::use_case_bp3::selected_partialities() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:93:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:152:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 152 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow_force()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:296:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 296 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:462:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 462 | for ( int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectangles(rstbx::bandpass::vec3ref)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:477:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 477 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectregions(rstbx::bandpass::vec3ref, const double&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:511:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 511 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::enclosed_pixels() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:543:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 543 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hi_predictions() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:752:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 752 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_lo_predictions() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:763:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 763 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:774:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 774 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions_labelit_format() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:787:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 787 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hkls() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:802:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 802 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::restricted_to_active_areas(scitbx::af::shared, scitbx::af::shared >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:815:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 815 | for (int idx = 0; idx < active_areas.size(); idx+=4){ | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:828:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 828 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ //DEPRECATED | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In function ‘scitbx::af::shared > rstbx::bandpass::ext::use_case_bp2_picture_fast_slow(scitbx::af::shared >, const cctbx::crystal_orientation&, const scitbx::vec3&, const double&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const double&, const scitbx::vec3&, const double&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:933:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 933 | for (int idx = 0; idx < indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = resolution_limited_pixel_accept_policy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:616:87: required from here 616 | enclosed_pixels_and_margin_pixels_detail(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = unlimited_pixel_accept_policy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:620:78: required from here 620 | enclosed_pixels_and_margin_pixels_detail(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_utils_ext.so.0 mmtbx/utils/utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so.0'->'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so'->'lib/mmtbx_utils_ext.so.0.0.1' g++ -o rstbx/bpcx/detector_model/detector_model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/bpcx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/src -Irstbx/bpcx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/detector_model/detector_model_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_validation_ramachandran_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_validation_ramachandran_ext.so.0 mmtbx/validation/ramachandran/rama_eval_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so.0'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' g++ -o lib/mmtbx_tls_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_ext.so.0 mmtbx/tls/tls_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o rstbx/bpcx/detector_model/sensor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/bpcx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/src -Irstbx/bpcx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/detector_model/sensor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so.0'->'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so'->'lib/mmtbx_tls_ext.so.0.0.1' g++ -o rstbx/diffraction/fastbragg/fastbragg_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/scope.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:4: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o rstbx/diffraction/fastbragg/fastbragg.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ g++ -o rstbx/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = scitbx::vec3; MillerConversionPolicy = rstbx::diffraction::fastbragg::vec3_double_miller_index_policy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:134:11: required from here 127 | class_("fast_bragg_simulation",init<>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | | 129 | .def("set_detector",&fast_bragg_simulation::set_detector) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("set_camera",&fast_bragg_simulation::set_camera) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("set_crystal",&fast_bragg_simulation::set_crystal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("sweep_over_detector",&fast_bragg_simulation::sweep_over_detector, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def("sweep_over_detector_float_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | rstbx::diffraction::fastbragg::vec3, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | rstbx::diffraction::fastbragg::vec3_double_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 456 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:417:9: warning: variable ‘j_image_ptr’ set but not used [-Wunused-but-set-variable=] 417 | int j_image_ptr = 0; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:418:9: warning: variable ‘progress_pixel’ set but not used [-Wunused-but-set-variable=] 418 | int progress_pixel = 0; | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = cctbx::miller::index<>; MillerConversionPolicy = rstbx::diffraction::fastbragg::integer_miller_index_policy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:138:11: required from here 127 | class_("fast_bragg_simulation",init<>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | | 129 | .def("set_detector",&fast_bragg_simulation::set_detector) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("set_camera",&fast_bragg_simulation::set_camera) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("set_crystal",&fast_bragg_simulation::set_crystal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("sweep_over_detector",&fast_bragg_simulation::sweep_over_detector, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def("sweep_over_detector_float_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | rstbx::diffraction::fastbragg::vec3, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | rstbx::diffraction::fastbragg::vec3_double_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 138 | .def("sweep_over_detector_integer_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | rstbx::diffraction::fastbragg::miller_t, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | rstbx::diffraction::fastbragg::integer_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 456 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:417:9: warning: variable ‘j_image_ptr’ set but not used [-Wunused-but-set-variable=] 417 | int j_image_ptr = 0; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:418:9: warning: variable ‘progress_pixel’ set but not used [-Wunused-but-set-variable=] 418 | int progress_pixel = 0; | ^~~~~~~~~~~~~~ g++ -o lib/rstbx_bpcx_detector_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bpcx_detector_model_ext.so.0 rstbx/bpcx/detector_model/detector_model_ext.o rstbx/bpcx/detector_model/sensor.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so.0'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' g++ -o rstbx/indexing_api/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/indexing_api/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/src -Irstbx/indexing_api/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_bandpass_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bandpass_ext.so.0 rstbx/bandpass/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lann-cctbx -lann_adaptor -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so.0'->'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so'->'lib/rstbx_bandpass_ext.so.0.0.1' g++ -o rstbx/apps/integration_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/apps/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/src -Irstbx/apps/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/integration_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/real_to_complex.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/dps_core/directional_fft.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/dps_core/dps_core.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/indexing_api.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/indexing_api.h:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp: In member function ‘void indexing_api::rayleigh_cpp::estimate_parameters_from_cdf(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:59:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 59 | for (int i=0; i < x_data.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::pdf(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:80:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 80 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::cdf(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:96:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 96 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::d_cdf_d_sigma(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::gradients(scitbx::af::shared, const int&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:129:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 129 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:135:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | for (int i = 0; i < gradients.size(); ++i){ | ~~^~~~~~~~~~~~~~~~~~ g++ -o lib/rstbx_diffraction_fastbragg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_diffraction_fastbragg_ext.so.0 rstbx/diffraction/fastbragg/fastbragg_ext.o rstbx/diffraction/fastbragg/fastbragg.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so.0'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/libdistl.h:81, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/distl.h:14, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/integration_ext.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/scanbox.h: In member function ‘Distl::interval_list Distl::scanbox_tiling_explicit::generate_defined_x_tiles(const int&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/scanbox.h:268:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 268 | for (int tile = 0 ; tile < tile_count; ++tile){ | ~~~~~^~~~~~~~~~~~ g++ -o rstbx/simage/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/simage/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/src -Irstbx/simage/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/ext.cpp /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::append_ISmask(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:222:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 222 | for (int i=0; i < mask.size(); i+=2){ | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::positional_correction_mapping(scitbx::af::shared >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:273:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 273 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 287 | for (int p=0; p >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:310:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 310 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 320 | for (int p=0; p > rstbx::integration::simple_integration::safe_background(const scitbx::af::flex_int&, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:366:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 366 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 378 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 395 | for (int i=0; i >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 495 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 550 | for (int i=0; i >, scitbx::af::shared >, scitbx::af::shared >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:575:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 575 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 638 | for (int k=0; k'lib/mmtbx_tls_utils_ext.so.0.0.1' 'lib/mmtbx_tls_utils_ext.so'->'lib/mmtbx_tls_utils_ext.so.0.0.1' g++ -o rstbx/simulation/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/simulation/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/src -Irstbx/simulation/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_indexing_api_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_indexing_api_ext.so.0 rstbx/indexing_api/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_indexing_api_ext.so.0.0.1' 'lib/rstbx_indexing_api_ext.so.0'->'lib/rstbx_indexing_api_ext.so.0.0.1' 'lib/rstbx_indexing_api_ext.so'->'lib/rstbx_indexing_api_ext.so.0.0.1' g++ -o rstbx/symmetry/constraints/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/symmetry/constraints/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/symmetry/constraints/src -Irstbx/symmetry/constraints/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/symmetry/constraints/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/symmetry/constraints/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/ext.cpp:2: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/image_simple.hpp: In member function ‘rstbx::simage::image_simple& rstbx::simage::image_simple::compute(const cctbx::uctbx::unit_cell&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const scitbx::mat3&, double, double, int, double, scitbx::vec2, scitbx::vec2, unsigned int, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/image_simple.hpp:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 144 | for(int i=0;i<=point_spread;i++) { | ~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/image_simple.hpp:148:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 148 | for(int j=0;j<=point_spread;j++) { | ~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/image_simple.hpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/ext.cpp: In function ‘std::string rstbx::simage::ext::combine_rgb_images(const boost::python::list&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/ext.cpp:58:42: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 58 | TBXX_ASSERT(bp::len(rgb_images[j]) == img_size); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/ext.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::shared rstbx::xfel1::select_proximal_indices(const int&, const double&, const double&, const cctbx::crystal_orientation&, const double&, const double&, const double&, const double&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int x = 0; x < indices_all.size(); ++x){ | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::versa > rstbx::xfel1::raw_diffraction(scitbx::af::shared, scitbx::af::versa >, const size_t&, const double&, const double&, const double&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 178 | for (int mcount=0; mcount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 230 | for (int isel = 0; isel < selected.size(); ++isel){ | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h:231:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int imos = 0; imos < mosaic_perturbations.size(); ++imos){ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h: In function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h: In function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = cctbx::crystal_orientation]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const cctbx::crystal_orientation&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = cctbx::crystal_orientation]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ g++ -o lib/rstbx_simage_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simage_ext.so.0 rstbx/simage/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/rstbx_symmetry_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_symmetry_constraints_ext.so.0 rstbx/symmetry/constraints/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so.0'->'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so'->'lib/rstbx_simage_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/rstbx_symmetry_constraints_ext.so.0.0.1' 'lib/rstbx_symmetry_constraints_ext.so.0'->'lib/rstbx_symmetry_constraints_ext.so.0.0.1' 'lib/rstbx_symmetry_constraints_ext.so'->'lib/rstbx_symmetry_constraints_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_grid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_grid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_simulation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simulation_ext.so.0 rstbx/simulation/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so.0'->'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so'->'lib/rstbx_simulation_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_bool.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_integration_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_integration_ext.so.0 rstbx/apps/integration_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lann-cctbx -lann_adaptor -lspotfinder -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so.0'->'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so'->'lib/rstbx_integration_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_size_t.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp: In member function ‘const char* scitbx::af::boost_python::cost_of_m_handle_in_af_shared::operator()(unsigned int, unsigned int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:368:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 368 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:376:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 376 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:384:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 384 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/selections.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:2: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/selections.h: In instantiation of ‘scitbx::af::shared scitbx::af::reindexing_array(std::size_t, const const_ref&) [with IntType = int; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:546:7: required from here 546 | reindexing_array, | ^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/selections.h:156:35: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 156 | SCITBX_ASSERT(iselection[i] < selectee_size); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/selections.h:156:7: note: in expansion of macro ‘SCITBX_ASSERT’ 156 | SCITBX_ASSERT(iselection[i] < selectee_size); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/c_grid_flex_conversions.h:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:85:46: required from here 85 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:86:45: required from here 86 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:87:36: required from here 87 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:88:36: required from here 88 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:89:36: required from here 89 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:90:36: required from here 90 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:91:37: required from here 91 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:92:39: required from here 92 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:93:39: required from here 93 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:94:39: required from here 94 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:95:39: required from here 95 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:96:39: required from here 96 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:97:53: required from here 97 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:98:53: required from here 98 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:99:53: required from here 99 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:101:50: required from here 101 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:102:51: required from here 102 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:103:55: required from here 103 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:104:55: required from here 104 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:105:55: required from here 105 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:106:58: required from here 106 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:107:53: required from here 107 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:108:53: required from here 108 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:109:53: required from here 109 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:111:54: required from here 111 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:113:46: required from here 113 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:114:46: required from here 114 | tuple_mapping_fixed_size >(); // scitbx/math/golay.h | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:116:49: required from here 116 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:118:50: required from here 118 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:119:50: required from here 119 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:120:50: required from here 120 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:121:50: required from here 121 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:123:53: required from here 123 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:124:53: required from here 124 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:125:53: required from here 125 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:128:51: required from here 128 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:129:52: required from here 129 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:130:42: required from here 130 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:131:42: required from here 131 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:132:45: required from here 132 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:133:63: required from here 133 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:134:45: required from here 134 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:135:49: required from here 135 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:136:51: required from here 136 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:137:52: required from here 137 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:138:42: required from here 138 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:139:42: required from here 139 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:140:45: required from here 140 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:141:45: required from here 141 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:142:49: required from here 142 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:144:60: required from here 144 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:145:60: required from here 145 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:147:54: required from here 147 | tuple_mapping_fixed_size, 2> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:148:54: required from here 148 | tuple_mapping_fixed_size, 3> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:149:54: required from here 149 | tuple_mapping_fixed_size, 4> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:150:54: required from here 150 | tuple_mapping_fixed_size, 2> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:151:54: required from here 151 | tuple_mapping_fixed_size, 3> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:152:54: required from here 152 | tuple_mapping_fixed_size, 4> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:154:64: required from here 154 | tuple_mapping_fixed_capacity(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 3>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:155:56: required from here 155 | tuple_mapping_fixed_capacity, 3> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 2>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:156:56: required from here 156 | tuple_mapping_fixed_capacity, 2> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 6>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:157:59: required from here 157 | tuple_mapping_fixed_capacity, 6> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 7>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:158:59: required from here 158 | tuple_mapping_fixed_capacity, 7> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:159:59: required from here 159 | tuple_mapping_fixed_capacity, 8> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:160:59: required from here 160 | tuple_mapping_fixed_capacity, 8> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/rstbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_ext.so.0 rstbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_ext.so.0.0.1' 'lib/rstbx_ext.so.0'->'lib/rstbx_ext.so.0.0.1' 'lib/rstbx_ext.so'->'lib/rstbx_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_int.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:429:8: required from here 429 | def("first_index", f_w::first_index_a_s, (arg("value"))); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:430:8: required from here 430 | def("last_index", f_w::last_index_a_s, (arg("value"))); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = bool]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned char]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ Create symlinks for: 'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so.0'->'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so'->'lib/rstbx_array_family_flex_ext.so.0.0.1' /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_float.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = signed char]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = float]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp: In function ‘scitbx::af::flex::type* scitbx::af::{anonymous}::from_list_or_tuple_of_lists_or_tuples(PyObject*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:138:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:154:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 154 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:190:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 190 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:206:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 206 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp: In function ‘std::string scitbx::af::{anonymous}::mathematica_form(const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:452:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 452 | for (int i=1; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 454 | if (i != indices.size() - 1) o << ","; | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:365:26: required from here 365 | return matrix::norm_1(self); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | for (int i=0; i scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:536:8: required from here 536 | def( | ~~~^ 537 | "double_from_byte_str", | ~~~~~~~~~~~~~~~~~~~~~~~ 538 | shared_from_byte_str, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 | (arg("byte_str"))); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = double]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_double_matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:119:74: required from here 119 | double (*matrix_norm_1)(const_ref const &) = matrix::norm_1; | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h:16:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 16 | for (int i=0; i >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:177:11: required from here 145 | class_f_t | ~~~~~~~~~ 146 | .def("is_square_matrix", is_square_matrix) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | .def("matrix_diagonal", | ~~~~~~~~~~~~~~~~~~~~~~~ 148 | (shared(*)( | ~~~~~~~~~~~~~~~~~~~ 149 | const_ref > const&)) matrix_diagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .def("matrix_upper_bidiagonal", matrix_upper_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | .def("matrix_lower_bidiagonal", matrix_lower_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 | (void(*)( | ~~~~~~~~~ 154 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | double const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 | arg("value")) | ~~~~~~~~~~~~~ 157 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | (void(*)( | ~~~~~~~~~ 159 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | const_ref const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | arg("diagonal")) | ~~~~~~~~~~~~~~~~ 162 | .def("matrix_diagonal_add_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | (void(*)( | ~~~~~~~~~ 164 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | double const&)) matrix_diagonal_add_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 | arg("value")) | ~~~~~~~~~~~~~ 167 | .def("matrix_diagonal_sum", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 | (double(*)( | ~~~~~~~~~~~ 169 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .def("matrix_trace", | ~~~~~~~~~~~~~~~~~~~~ 171 | (double(*)( | ~~~~~~~~~~~ 172 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | .def("matrix_diagonal_product", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | (double(*)( | ~~~~~~~~~~~ 175 | const_ref > const&)) matrix_diagonal_product) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 | .def("matrix_norm_1", matrix_norm_1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | .def("matrix_norm_inf", matrix::norm_inf) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h:32:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 32 | for (int i=0; i >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:178:11: required from here 145 | class_f_t | ~~~~~~~~~ 146 | .def("is_square_matrix", is_square_matrix) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | .def("matrix_diagonal", | ~~~~~~~~~~~~~~~~~~~~~~~ 148 | (shared(*)( | ~~~~~~~~~~~~~~~~~~~ 149 | const_ref > const&)) matrix_diagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .def("matrix_upper_bidiagonal", matrix_upper_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | .def("matrix_lower_bidiagonal", matrix_lower_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 | (void(*)( | ~~~~~~~~~ 154 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | double const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 | arg("value")) | ~~~~~~~~~~~~~ 157 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | (void(*)( | ~~~~~~~~~ 159 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | const_ref const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | arg("diagonal")) | ~~~~~~~~~~~~~~~~ 162 | .def("matrix_diagonal_add_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | (void(*)( | ~~~~~~~~~ 164 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | double const&)) matrix_diagonal_add_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 | arg("value")) | ~~~~~~~~~~~~~ 167 | .def("matrix_diagonal_sum", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 | (double(*)( | ~~~~~~~~~~~ 169 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .def("matrix_trace", | ~~~~~~~~~~~~~~~~~~~~ 171 | (double(*)( | ~~~~~~~~~~~ 172 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | .def("matrix_diagonal_product", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | (double(*)( | ~~~~~~~~~~~ 175 | const_ref > const&)) matrix_diagonal_product) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 | .def("matrix_norm_1", matrix_norm_1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | .def("matrix_norm_inf", matrix::norm_inf) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | .def("matrix_norm_frobenius", matrix::norm_frobenius) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h:46:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int k=0; k < a_ij.size(); ++k) norm_accu(a_ij[k]); | ~~^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_complex_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::complex]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_std_string.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:885:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 885 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:886:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 886 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_random.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_random.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_sort.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sort.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_histogram.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_histogram.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_weighted_histogram.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_weighted_histogram.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_mean_and_variance.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mean_and_variance.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_median.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_median.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_linear_interpolation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_linear_interpolation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_vec3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_median.cpp:2: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/basic_statistics.h: In instantiation of ‘scitbx::math::median_statistics scitbx::math::median_functor::dispersion(const scitbx::af::ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_median.cpp:31:26: required from ‘static scitbx::math::median_statistics scitbx::af::boost_python::median_functor_wrapper::dispersion(wt&, const scitbx::af::const_ref&) [with FloatType = double; wt = scitbx::math::median_functor]’ 31 | return O.dispersion(af::make_ref(buffer)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_median.cpp:40:13: required from ‘static void scitbx::af::boost_python::median_functor_wrapper::wrap(const char*) [with FloatType = double]’ 36 | class_(name, no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | .def(init<>()) | ~~~~~~~~~~~~~~ 38 | .def(init(arg("seed"))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | .def("__call__", call, arg("data")) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | .def("dispersion", dispersion, arg("data")) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_median.cpp:63:41: required from here 63 | median_functor_wrapper::wrap("median_functor"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/basic_statistics.h:210:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | for (int i=0; i < data.size(); ++i) { | ~~^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_vec2_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_vec3_int.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_sym_mat3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp: In function ‘scitbx::af::flex >::type* scitbx::af::{anonymous}::array_indices_as_double_from_array_focus_dimensions(const scitbx::vec2&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:128:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 128 | for(std::size_t i=0;i::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec2]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::sym_mat3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::sym_mat3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::sym_mat3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::sym_mat3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::sym_mat3*; _Size = long unsigned int; _Tp = scitbx::sym_mat3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec2; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec2&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec2]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec2&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec2*; _Size = long unsigned int; _Tp = scitbx::vec2]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_mat3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::mat3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_tiny_size_t_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/loops.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/loops.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = tiny]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/show_sizes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/show_sizes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::mat3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::mat3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::mat3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::mat3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::mat3*; _Size = long unsigned int; _Tp = scitbx::mat3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/numpy_bridge.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DSCITBX_HAVE_NUMPY_INCLUDE -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/shared_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/cubicle_neighbors_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/fftpack/boost_python/fftpack_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/boost_python/fftpack_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::af::tiny; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::af::tiny]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::af::tiny*; _Size = long unsigned int; _Tp = scitbx::af::tiny]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = std::complex]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = std::complex]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:210:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:210:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:211:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:211:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:217:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:217:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:218:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:218:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:226:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:226:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:40:53: required from here 40 | shared_wrapper, rir>::wrap("stl_vector_unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:41:51: required from here 41 | shared_wrapper, rir>::wrap("stl_vector_double"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:42:50: required from here 42 | shared_wrapper, rir>::wrap("stl_set_unsigned") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:48:37: required from here 48 | shared_wrapper >::wrap("mat3_int"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:49:40: required from here 49 | shared_wrapper >::wrap("tiny_int_3"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:50:40: required from here 50 | shared_wrapper >::wrap("tiny_int_4"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:51:40: required from here 51 | shared_wrapper >::wrap("tiny_int_2"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/gridding.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/boost_python/fftpack_ext.cpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors_ext.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp: In instantiation of ‘std::map > scitbx::cubicle_neighbors::neighbors_of(const scitbx::af::const_ref >&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors_ext.cpp:23:36: required from here 23 | .def("neighbors_of", &w_t::neighbors_of, ( | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp:61:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 61 | if (i_cub[0] < 0 || i_cub[0] >= n_cubicles[0]) continue; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp:63:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 63 | if (i_cub[1] < 0 || i_cub[1] >= n_cubicles[1]) continue; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp:65:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 65 | if (i_cub[2] < 0 || i_cub[2] >= n_cubicles[2]) continue; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = scitbx::vec3; CubicleContentType = std::vector::cubicle_site, std::allocator::cubicle_site> >; FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp:43:30: required from ‘scitbx::cubicle_neighbors::cubicle_neighbors(const scitbx::af::const_ref >&, const FloatType&, const FloatType&) [with FloatType = double]’ 43 | cubicles_.i_cubicle(main_sites_cart[i_seq])); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; Value = scitbx::cubicle_neighbors<>; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<3>::apply::execute(PyObject*, t0, t1, t2) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector3 >&, const double&, const double&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const double&; t2 = const double&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector3 >&, const double&, const double&>; Arity = boost::mpl::size >&, const double&, const double&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const double&, const double&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const double&, const double&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const double&, const double&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const double&, const double&>; W = scitbx::cubicle_neighbors<>; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors_ext.cpp:16:13: required from here 15 | class_("cubicle_neighbors", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 16 | .def(init< | ~~~~^~~~~~ 17 | af::const_ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 18 | double const&, | ~~~~~~~~~~~~~~ 19 | double const&>(( | ~~~~~~~~~~~~~~~~ 20 | arg("main_sites_cart"), | ~~~~~~~~~~~~~~~~~~~~~~~ 21 | arg("cubicle_edge"), | ~~~~~~~~~~~~~~~~~~~~ 22 | arg("epsilon")=1.e-6))) | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ g++ -o scitbx/glmtbx/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/glmtbx/boost_python/ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/graphics_utils/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/graphics_utils/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_flex_ext.so.0 scitbx/array_family/boost_python/flex_ext.o scitbx/array_family/boost_python/flex_grid.o scitbx/array_family/boost_python/flex_bool.o scitbx/array_family/boost_python/flex_size_t.o scitbx/array_family/boost_python/flex_int.o scitbx/array_family/boost_python/flex_float.o scitbx/array_family/boost_python/flex_double.o scitbx/array_family/boost_python/flex_double_matrix.o scitbx/array_family/boost_python/flex_complex_double.o scitbx/array_family/boost_python/flex_std_string.o scitbx/array_family/boost_python/flex_random.o scitbx/array_family/boost_python/flex_sort.o scitbx/array_family/boost_python/flex_histogram.o scitbx/array_family/boost_python/flex_weighted_histogram.o scitbx/array_family/boost_python/flex_mean_and_variance.o scitbx/array_family/boost_python/flex_median.o scitbx/array_family/boost_python/flex_linear_interpolation.o scitbx/array_family/boost_python/flex_vec3_double.o scitbx/array_family/boost_python/flex_vec2_double.o scitbx/array_family/boost_python/flex_vec3_int.o scitbx/array_family/boost_python/flex_sym_mat3_double.o scitbx/array_family/boost_python/flex_mat3_double.o scitbx/array_family/boost_python/flex_tiny_size_t_2.o scitbx/array_family/boost_python/loops.o scitbx/array_family/boost_python/show_sizes.o scitbx/array_family/boost_python/numpy_bridge.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_numpy314 g++ -o lib/scitbx_cubicle_neighbors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_cubicle_neighbors_ext.so.0 scitbx/cubicle_neighbors_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so.0'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' g++ -o scitbx/iso_surface/iso_surface_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/iso_surface/iso_surface_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so.0'->'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so'->'lib/scitbx_array_family_flex_ext.so.0.0.1' g++ -o scitbx/lbfgs/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DSCITBX_LBFGS_HAVE_LBFGS_FEM -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgs/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_glmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_glmtbx_ext.so.0 scitbx/glmtbx/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/scitbx_iso_surface_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_iso_surface_ext.so.0 scitbx/iso_surface/iso_surface_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so.0'->'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so'->'lib/scitbx_glmtbx_ext.so.0.0.1' g++ -o scitbx/lbfgs/lbfgs_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable scitbx/lbfgs/lbfgs_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so.0'->'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so'->'lib/scitbx_iso_surface_ext.so.0.0.1' g++ -o scitbx/lbfgsb/boost_python/lbfgsb_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem.hpp:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/lbfgs_fem.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o lib/scitbx_graphics_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_graphics_utils_ext.so.0 scitbx/graphics_utils/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so.0'->'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so'->'lib/scitbx_graphics_utils_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/linalg_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/linalg_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/linalg/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/serialization/base_256.h:2, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/floating_point_epsilon.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ 142 | raw::setulb( | ~~~~~~~~~~~^ 143 | n_, | ~~~ 144 | m_, | ~~~ 145 | raw::ref1(x), | ~~~~~~~~~~~~~~~~~~~~~~~~ 146 | raw::ref1(l_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | raw::ref1(u_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | raw::ref1(nbd_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | f_, | ~~~ 150 | raw::ref1(g), | ~~~~~~~~~~~~~~~~~~~~~~~~ 151 | factr_, | ~~~~~~~ 152 | pgtol_, | ~~~~~~~ 153 | raw::ref1(wa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | raw::ref1(iwa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | task_, | ~~~~~~ 156 | iprint_, | ~~~~~~~~ 157 | csave_, | ~~~~~~~ 158 | raw::ref1(lsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 | raw::ref1(isave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | raw::ref1(dsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | enable_stp_init_); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 29 | .def("process", &w_t::process, ( | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 974 | write_ref1(" X =", x); | ~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 3786 | prn3lb(n,x,f,task,iprint,info,itfile, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3787 | iter,nfgv,nintol,nskip,nact,sbgnrm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3788 | zero,nint,word,iback,stp,xstep,k, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3789 | cachyt,sbtime,lnscht); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ 142 | raw::setulb( | ~~~~~~~~~~~^ 143 | n_, | ~~~ 144 | m_, | ~~~ 145 | raw::ref1(x), | ~~~~~~~~~~~~~~~~~~~~~~~~ 146 | raw::ref1(l_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | raw::ref1(u_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | raw::ref1(nbd_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | f_, | ~~~ 150 | raw::ref1(g), | ~~~~~~~~~~~~~~~~~~~~~~~~ 151 | factr_, | ~~~~~~~ 152 | pgtol_, | ~~~~~~~ 153 | raw::ref1(wa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | raw::ref1(iwa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | task_, | ~~~~~~ 156 | iprint_, | ~~~~~~~~ 157 | csave_, | ~~~~~~~ 158 | raw::ref1(lsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 | raw::ref1(isave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | raw::ref1(dsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | enable_stp_init_); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 29 | .def("process", &w_t::process, ( | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j::minimizer(const int&, const int&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, bool, const FloatType&, const FloatType&, const int&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value >; A3 = boost::python::objects::reference_to_value >; A4 = boost::python::objects::reference_to_value >; A5 = bool; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; Value = scitbx::lbfgsb::minimizer; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<9>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; PyObject = _object; t0 = const int&; t1 = const int&; t2 = scitbx::af::shared; t3 = scitbx::af::shared; t4 = scitbx::af::shared; t5 = bool; t6 = const double&; t7 = const double&; t8 = const int&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; Arity = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, not_specified, not_specified, not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = scitbx::lbfgsb::minimizer; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:20:13: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 19 | class_("minimizer", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 20 | .def(init, | ~~~~~~~~~~~~~~~~~~~~~~ 23 | af::shared, | ~~~~~~~~~~~~~~~~~~~~~~ 24 | af::shared, | ~~~~~~~~~~~~~~~~ 25 | bool, | ~~~~~ 26 | FloatType const&, | ~~~~~~~~~~~~~~~~~ 27 | FloatType const&, | ~~~~~~~~~~~~~~~~~ 28 | int const&>()) | ~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:118:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 118 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:118:9: note: in expansion of macro ‘SCITBX_ASSERT’ 118 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:119:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 119 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:119:9: note: in expansion of macro ‘SCITBX_ASSERT’ 119 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:120:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 120 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:120:9: note: in expansion of macro ‘SCITBX_ASSERT’ 120 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/linalg/boost_python/cholesky.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/cholesky.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_fftpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_fftpack_ext.so.0 scitbx/fftpack/boost_python/fftpack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so.0'->'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so'->'lib/scitbx_fftpack_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/householder.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/householder.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/linalg/boost_python/svd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/svd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_lbfgsb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgsb_ext.so.0 scitbx/lbfgsb/boost_python/lbfgsb_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so.0'->'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so'->'lib/scitbx_lbfgsb_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/eigensystem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/eigensystem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_array_family_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_shared_ext.so.0 scitbx/array_family/boost_python/shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_numpy314 Create symlinks for: 'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so.0'->'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so'->'lib/scitbx_array_family_shared_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/lapack_fem_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lstbx/boost_python/lstbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lstbx/boost_python/lstbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lstbx/boost_python/normal_equations.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lstbx/boost_python/normal_equations.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp: In function ‘int scitbx::lapack::boost_python::dsyev_wrapper(const std::string&, const std::string&, const scitbx::af::ref >&, const scitbx::af::ref&, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 246 | SCITBX_ASSERT(w.size() == n); | ~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:5: note: in expansion of macro ‘SCITBX_ASSERT’ 246 | SCITBX_ASSERT(w.size() == n); | ^~~~~~~~~~~~~ g++ -o lib/scitbx_lbfgs_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgs_ext.so.0 scitbx/lbfgs/ext.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so.0'->'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so'->'lib/scitbx_lbfgs_ext.so.0.0.1' g++ -o scitbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/math_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/basic_statistics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/basic_statistics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/gaussian.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/gaussian.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/golay.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/golay.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_linalg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_linalg_ext.so.0 scitbx/linalg/boost_python/linalg_ext.o scitbx/linalg/boost_python/matrix.o scitbx/linalg/boost_python/cholesky.o scitbx/linalg/boost_python/householder.o scitbx/linalg/boost_python/svd.o scitbx/linalg/boost_python/eigensystem.o scitbx/linalg/boost_python/lapack_fem_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so.0'->'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so'->'lib/scitbx_linalg_ext.so.0.0.1' g++ -o scitbx/math/boost_python/minimum_covering_sphere.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/minimum_covering_sphere.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/principal_axes_of_inertia.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/principal_axes_of_inertia.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/row_echelon.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/row_echelon.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/chebyshev.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/chebyshev.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/icosahedron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/icosahedron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/slatec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/slatec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/line_search.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/line_search.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_lstbx_normal_equations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lstbx_normal_equations_ext.so.0 scitbx/lstbx/boost_python/lstbx_ext.o scitbx/lstbx/boost_python/normal_equations.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so.0'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' g++ -o scitbx/math/boost_python/r3_rotation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/r3_rotation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/resample.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/resample.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/quadrature.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/quadrature.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/unimodular_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/unimodular_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/halton.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/halton.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/least_squares_plane.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/least_squares_plane.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/continued_fraction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/continued_fraction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/numeric_limits.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/numeric_limits.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/distributions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/distributions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/exp_functions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/exp_functions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/zernike.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/zernike.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/zernike_moments.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/zernike_moments.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/2d_zernike_moments.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/2d_zernike_moments.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/weighted_covariance.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/weighted_covariance.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/rotation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/rotation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/interpolation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/interpolation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/tetrahedron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/tetrahedron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/angle_derivative.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/angle_derivative.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/minpack/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/r3_utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/r3_utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/random/boost_python/random_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/random/boost_python/random_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/random/boost_python/basic_distributions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/random/boost_python/basic_distributions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/rigid_body/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/raw.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/levenberg_marquardt.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/ext.cpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/levenberg_marquardt.h: In member function ‘void scitbx::minpack::levenberg_marquardt::process_fvec(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/levenberg_marquardt.h:80:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | SCITBX_ASSERT(fvec.size() == m); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/levenberg_marquardt.h:80:9: note: in expansion of macro ‘SCITBX_ASSERT’ 80 | SCITBX_ASSERT(fvec.size() == m); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rotr3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/spatial_lib.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/featherstone.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/tardy.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp:14: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 4]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:361:21: required from ‘scitbx::rotr3 scitbx::rigid_body::joint_lib::six_dof_aja_simplified(const scitbx::vec3&, const scitbx::af::const_ref&) [with FloatType = double]’ 361 | af::tiny qe(&q[0], &q[4]); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp:24:49: required from here 24 | result = joint_lib::six_dof_aja_simplified(center_of_mass, q); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_matrix.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/spatial_lib.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’ 44 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/featherstone.h:683:31: required from ‘scitbx::af::shared > scitbx::rigid_body::featherstone::system_model::inverse_dynamics(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&) [with FloatType = double]’ 683 | tau_array[ib] = af::small(f[ib].begin(), f[ib].end()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/featherstone.h:705:21: required from ‘scitbx::af::shared scitbx::rigid_body::featherstone::system_model::inverse_dynamics_packed(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with FloatType = double]’ 705 | tau_array = inverse_dynamics( | ^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp:120:46: required from here 120 | .def("inverse_dynamics_packed", &wt::inverse_dynamics_packed, ( | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o lib/scitbx_r3_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_r3_utils_ext.so.0 scitbx/r3_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o scitbx/sparse/boost_python/vector.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/vector.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so.0'->'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so'->'lib/scitbx_r3_utils_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/tardy.h: In instantiation of ‘scitbx::af::shared > > scitbx::rigid_body::tardy::construct_bodies(const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const boost::python::api::object&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/tardy.h:203:54: required from ‘scitbx::rigid_body::tardy::model::model(const boost::python::api::object&, const scitbx::af::shared >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, const ft&) [with FloatType = double; ft = double]’ 203 | featherstone::system_model(construct_bodies( | ~~~~~~~~~~~~~~~~^ 204 | sites_.const_ref(), | ~~~~~~~~~~~~~~~~~~~ 205 | masses_.const_ref(), | ~~~~~~~~~~~~~~~~~~~~ 206 | tardy_tree_.attr("cluster_manager"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 | near_singular_hinges_angular_tolerance_deg_)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = scitbx::rigid_body::tardy::model<>; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; PyObject = _object; t0 = const boost::python::api::object&; t1 = const scitbx::af::shared >&; t2 = const scitbx::af::shared&; t3 = const boost::python::api::object&; t4 = const boost::python::api::object&; t5 = const double&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; Arity = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:344:31: required from ‘static void boost::python::detail::define_class_init_helper::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, boost::python::detail::keyword_range) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; int NDefaults = 1; boost::python::detail::keyword_range = std::pair]’ 344 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedT = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional > >; classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedVisitor = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >; W = scitbx::rigid_body::tardy::model<>; X1 = boost::python::bases >; X2 = boost::noncopyable_::noncopyable; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp:151:13: required from here 146 | class_ >, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | boost::noncopyable | ~~~~~~~~~~~~~~~~~~ 149 | >("tardy_model", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .enable_pickling() | ~~~~~~~~~~~~~~~~~~ 151 | .def(init< | ~~~~^~~~~~ 152 | object const&, | ~~~~~~~~~~~~~~ 153 | af::shared > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | af::shared const&, | ~~~~~~~~~~~~~~~~~~~~~~ 155 | object const&, | ~~~~~~~~~~~~~~ 156 | object const&, | ~~~~~~~~~~~~~~ 157 | optional >(( | ~~~~~~~~~~~~~~~~~~~~~~~ 158 | arg("labels"), | ~~~~~~~~~~~~~~ 159 | arg("sites"), | ~~~~~~~~~~~~~ 160 | arg("masses"), | ~~~~~~~~~~~~~~ 161 | arg("tardy_tree"), | ~~~~~~~~~~~~~~~~~~ 162 | arg("potential_obj"), | ~~~~~~~~~~~~~~~~~~~~~ 163 | arg("near_singular_hinges_angular_tolerance_deg")=5))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/tardy.h:163:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 163 | SCITBX_ASSERT(body->parent < nc); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/tardy.h:163:9: note: in expansion of macro ‘SCITBX_ASSERT’ 163 | SCITBX_ASSERT(body->parent < nc); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 1]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:648:13: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::revolute::new_q(const scitbx::af::const_ref&) const [with FloatType = double]’ 648 | af::tiny(q.begin(), q.end()))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:643:5: required from here 643 | new_q( | ^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 12]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:45:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::rbda_eq_4_13(const scitbx::af::tiny&) [with FloatType = double]’ 45 | return af::tiny(coeffs, coeffs+4*3) * ft(0.5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:279:21: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::six_dof::time_step_position(const scitbx::af::const_ref&, const ft&) const [with FloatType = double; ft = double]’ 279 | rbda_eq_4_13(unit_quaternion), w_body_frame); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:271:5: required from here 271 | time_step_position( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 16]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:79:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::d_unit_quaternion_d_qe_matrix(const scitbx::af::tiny&) [with FloatType = double]’ 79 | return af::tiny(coeffs, coeffs+4*4) / n3; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:317:58: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ 317 | af::tiny d = d_unit_quaternion_d_qe_matrix(qe); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:313:5: required from here 313 | tau_as_d_e_pot_d_q( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’ 44 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:324:24: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ 324 | af::small result(cn.begin(), cn.end()); | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:313:5: required from here 313 | tau_as_d_e_pot_d_q( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o lib/scitbx_minpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_minpack_ext.so.0 scitbx/minpack/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_minpack -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so.0'->'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so'->'lib/scitbx_minpack_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/approx_equal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/approx_equal.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_math_ext.so.0 scitbx/math/boost_python/math_ext.o scitbx/math/boost_python/basic_statistics.o scitbx/math/boost_python/gaussian.o scitbx/math/boost_python/golay.o scitbx/math/boost_python/minimum_covering_sphere.o scitbx/math/boost_python/principal_axes_of_inertia.o scitbx/math/boost_python/row_echelon.o scitbx/math/boost_python/tensor_rank_2.o scitbx/math/boost_python/chebyshev.o scitbx/math/boost_python/icosahedron.o scitbx/math/boost_python/slatec.o scitbx/math/boost_python/line_search.o scitbx/math/boost_python/r3_rotation.o scitbx/math/boost_python/resample.o scitbx/math/boost_python/quadrature.o scitbx/math/boost_python/unimodular_generator.o scitbx/math/boost_python/halton.o scitbx/math/boost_python/least_squares_plane.o scitbx/math/boost_python/continued_fraction.o scitbx/math/boost_python/numeric_limits.o scitbx/math/boost_python/distributions.o scitbx/math/boost_python/exp_functions.o scitbx/math/boost_python/zernike.o scitbx/math/boost_python/zernike_moments.o scitbx/math/boost_python/2d_zernike_moments.o scitbx/math/boost_python/weighted_covariance.o scitbx/math/boost_python/rotation.o scitbx/math/boost_python/interpolation.o scitbx/math/boost_python/tetrahedron.o scitbx/math/boost_python/angle_derivative.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_slatec -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so.0'->'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so'->'lib/scitbx_math_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/random.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/random.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_matrix.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/array_as_list.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp:3: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::af::tiny*; _Size = long unsigned int; _Tp = scitbx::af::tiny]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/sparse/boost_python/lu_factorization.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/lu_factorization.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h: In function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::af::tiny]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ g++ -o lib/scitbx_random_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_random_ext.so.0 scitbx/random/boost_python/random_ext.o scitbx/random/boost_python/basic_distributions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so.0'->'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so'->'lib/scitbx_random_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/sparse_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/sparse_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/stl/set_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/stl/vector_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/suffixtree/boost_python/suffixtree_shared_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_sparse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_sparse_ext.so.0 scitbx/sparse/boost_python/vector.o scitbx/sparse/boost_python/matrix.o scitbx/sparse/boost_python/approx_equal.o scitbx/sparse/boost_python/random.o scitbx/sparse/boost_python/lu_factorization.o scitbx/sparse/boost_python/sparse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_ext.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_wrapper.h: In static member function ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_wrapper.h:52:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 52 | bp::class_ >(python_name.c_str()) | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_wrapper.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = unsigned int; std::string = std::__cxx11::basic_string]’ 68 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 69 | w_t, scitbx::boost_python::container_conversions::set_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_ext.cpp:9:32: required from here 9 | set_wrapper::wrap("unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’ 68 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 69 | w_t, scitbx::boost_python::container_conversions::set_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_ext.cpp:10:35: required from here 10 | set_wrapper::wrap("stl_string"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/scitbx_rigid_body_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_rigid_body_ext.so.0 scitbx/rigid_body/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so.0'->'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so'->'lib/scitbx_sparse_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/suffixtree_single_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/suffixtree/boost_python/suffixtree_single_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so.0'->'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so'->'lib/scitbx_rigid_body_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/object_extensions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/suffixtree/boost_python/object_extensions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_wrapper.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_ext.cpp:2: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_ext.cpp:10:35: required from here 10 | vector_wrapper::wrap("unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_ext.cpp:11:33: required from here 11 | vector_wrapper::wrap("double"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_ext.cpp:14:50: required from here 14 | vector_wrapper, rir>::wrap("set_unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/wigner/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/wigner/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_suffixtree_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_shared_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so.0'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' g++ -o smtbx/ab_initio/ab_initio_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/ab_initio/ab_initio_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_set_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_set_ext.so.0 scitbx/stl/set_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so.0'->'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so'->'lib/scitbx_stl_set_ext.so.0.0.1' g++ -o smtbx/array_family/af_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/array_family/af_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_ab_initio_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_ab_initio_ext.so.0 smtbx/ab_initio/ab_initio_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so.0'->'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so'->'lib/smtbx_ab_initio_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_wigner_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_wigner_ext.so.0 scitbx/wigner/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so.0'->'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so'->'lib/scitbx_wigner_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/constraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/constraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_array_family_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_array_family_ext.so.0 smtbx/array_family/af_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so.0'->'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so'->'lib/smtbx_array_family_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/direction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/direction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_map_ext.so.0 scitbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so.0'->'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so'->'lib/scitbx_stl_map_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/independent_scalar_parameters.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_vector_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_vector_ext.so.0 scitbx/stl/vector_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so.0'->'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so'->'lib/scitbx_stl_vector_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/occupancy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/occupancy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_suffixtree_single_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_single_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_single_ext.o scitbx/suffixtree/boost_python/object_extensions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so.0'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/rigid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/rigid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/same_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/same_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/scaled_adp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/scaled_adp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/scatterer_parameters.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/scatterer_parameters.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/shared.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/shared.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/symmetry_equivalent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/least_squares_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/boost_python/least_squares_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/weighting_schemes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/boost_python/weighting_schemes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/least_squares.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/boost_python/least_squares.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/restraints/boost_python/origin_fixing.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/restraints/boost_python/origin_fixing.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/restraints/boost_python/restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/restraints/boost_python/restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/stl/map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/structure_factors/direct/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/structure_factors/direct/boost_python/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/structure_factors/direct/boost_python/standard_xray.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/structure_factors/direct/boost_python/standard_xray.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_constraints_ext.so.0 smtbx/refinement/constraints/boost_python/affine.o smtbx/refinement/constraints/boost_python/constraints_ext.o smtbx/refinement/constraints/boost_python/direction.o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o smtbx/refinement/constraints/boost_python/occupancy.o smtbx/refinement/constraints/boost_python/reparametrisation.o smtbx/refinement/constraints/boost_python/rigid.o smtbx/refinement/constraints/boost_python/same_group.o smtbx/refinement/constraints/boost_python/scaled_adp.o smtbx/refinement/constraints/boost_python/scatterer_parameters.o smtbx/refinement/constraints/boost_python/shared.o smtbx/refinement/constraints/boost_python/special_position.o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_python314 -lm g++ -o spotfinder/array_family/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/array_family/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/src -Ispotfinder/array_family/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so.0'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' g++ -o spotfinder/array_family/flex_distl_spot.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/array_family/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/src -Ispotfinder/array_family/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/flex_distl_spot.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/boost_python/distltbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/distltbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_stl_map_ext.so.0 smtbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so.0'->'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so'->'lib/smtbx_stl_map_ext.so.0.0.1' g++ -o spotfinder/diffraction/geometry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/diffraction/geometry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/dxtbx_toolbox/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/dxtbx_toolbox/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/dxtbx_toolbox/src -Ispotfinder/dxtbx_toolbox/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/dxtbx_toolbox/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/dxtbx_toolbox/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_restraints_ext.so.0 smtbx/refinement/restraints/boost_python/origin_fixing.o smtbx/refinement/restraints/boost_python/restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so.0'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/boost_python/hough_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/hough_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/spotfinder_dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_dxtbx_ext.so.0 spotfinder/dxtbx_toolbox/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -ldxtbxspotfinder -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so.0'->'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so'->'lib/spotfinder_dxtbx_ext.so.0.0.1' g++ -o lib/std_pair_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=std_pair_ext.so.0 boost_adaptbx/std_pair_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so.0'->'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so'->'lib/std_pair_ext.so.0.0.1' g++ -o xcif/xcif_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/xcif_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/spotfinder_hough_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_hough_ext.so.0 spotfinder/core_toolbox/boost_python/hough_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so.0'->'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so'->'lib/spotfinder_hough_ext.so.0.0.1' g++ -o mmtbx/masks/tst_mask.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/masks/tst_mask.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_least_squares_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_least_squares_ext.so.0 smtbx/refinement/boost_python/least_squares_ext.o smtbx/refinement/boost_python/weighting_schemes.o smtbx/refinement/boost_python/least_squares.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_refinement_least_squares_ext.so.0.0.1' 'lib/smtbx_refinement_least_squares_ext.so.0'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1' 'lib/smtbx_refinement_least_squares_ext.so'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/regression_test_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/masks/tst_mask -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread mmtbx/masks/tst_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_masks -liotbx_pdb -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm g++ -o scitbx/array_family/tst_accessors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:15: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<1>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:127:11: required from here 127 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<4>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:145:11: required from here 145 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<2>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:172:11: required from here 172 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<3>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:202:11: required from here 202 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:248:11: required from here 248 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:280:11: required from here 280 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:326:11: required from here 326 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:371:11: required from here 371 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/list.hpp:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:156:78: required from here 156 | scitbx::boost_python::container_conversions::variable_capacity_policy>(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:160:72: required from here 160 | scitbx::boost_python::container_conversions::linked_list_policy>(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:164:71: required from here 164 | scitbx::boost_python::container_conversions::fixed_size_policy>(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:168:71: required from here 168 | scitbx::boost_python::container_conversions::fixed_size_policy>(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:172:75: required from here 172 | scitbx::boost_python::container_conversions::fixed_capacity_policy>(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/smtbx_structure_factors_direct_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_structure_factors_direct_ext.so.0 smtbx/structure_factors/direct/boost_python/ext.o smtbx/structure_factors/direct/boost_python/standard_xray.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm g++ -o lib/spotfinder_distltbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_distltbx_ext.so.0 spotfinder/core_toolbox/boost_python/distltbx_ext.o spotfinder/diffraction/geometry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so.0'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/spotfinder_distltbx_ext.so.0.0.1' 'lib/spotfinder_distltbx_ext.so.0'->'lib/spotfinder_distltbx_ext.so.0.0.1' 'lib/spotfinder_distltbx_ext.so'->'lib/spotfinder_distltbx_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/scoped_array.hpp:14, from /usr/include/boost/scoped_array.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family/tiny_plain_apply.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::small_plain]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:619:52: required from here 619 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_2() [with ArrayType = scitbx::af::small]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:621:46: required from here 621 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_2() [with ArrayType = scitbx::af::shared_plain]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared_plain]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:624:48: required from here 624 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_2() [with ArrayType = scitbx::af::shared]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:629:42: required from here 629 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_1() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’ 415 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:635:64: required from here 634 | versa_exercise, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 | af::versa_plain > >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::versa_exercise::run_1() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’ 415 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:637:58: required from here 636 | versa_exercise, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 | af::versa > >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family/small_plain_apply.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = int; long unsigned int N = 128]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:41:17: required from ‘static void {anonymous}::array_exercise::run_1() [with ArrayType = scitbx::af::small_plain]’ 41 | ArrayType a5(a4.begin(), a4.begin()); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:28:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ 28 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:619:52: required from here 619 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_accessors -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_accessors.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_af_3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/xcif_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=xcif_ext.so.0 xcif/xcif_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread -lboost_python314 -lm g++ -o scitbx/array_family/tst_af_2 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_af_4.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_4.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/xcif_ext.so.0.0.1' 'lib/xcif_ext.so.0'->'lib/xcif_ext.so.0.0.1' 'lib/xcif_ext.so'->'lib/xcif_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_5.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_5.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/regression_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=regression_test_ext.so.0 scitbx/array_family/boost_python/regression_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_numpy314 Create symlinks for: 'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so.0'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' g++ -o scitbx/array_family/tst_mat3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_mat3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_af_3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_optional_copy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_af_1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_rectangular_full_packed.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_mat3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_mat3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o scitbx/array_family/tst_af_5 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_5.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o scitbx/array_family/tst_ref_matrix_facet.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_ref_matrix_facet.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp: In function ‘int main()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 52 | for(int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/error/tst_error -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/error/tst_error.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/complex_to_complex.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/complex_to_complex_3d.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/timing/test0.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgs/sdrive_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable scitbx/lbfgs/sdrive_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/spotfinder_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_array_family_flex_ext.so.0 spotfinder/array_family/flex_ext.o spotfinder/array_family/flex_distl_spot.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o scitbx/array_family/tst_vec3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_vec3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o scitbx/lbfgs/tst_lbfgs.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgs/tst_lbfgs.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem.hpp:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/sdrive_fem.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/spotfinder_array_family_flex_ext.so.0.0.1' 'lib/spotfinder_array_family_flex_ext.so.0'->'lib/spotfinder_array_family_flex_ext.so.0.0.1' 'lib/spotfinder_array_family_flex_ext.so'->'lib/spotfinder_array_family_flex_ext.so.0.0.1' g++ -o scitbx/lbfgsb/dev/driver1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgs/sdrive_fem -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgs/sdrive_fem.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o scitbx/lbfgsb/dev/driver2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/serialization/base_256.h:2, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/floating_point_epsilon.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver1.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here 69 | setulb( | ~~~~~~^ 70 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 974 | write_ref1(" X =", x); | ~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 3786 | prn3lb(n,x,f,task,iprint,info,itfile, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3787 | iter,nfgv,nintol,nskip,nact,sbgnrm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3788 | zero,nint,word,iback,stp,xstep,k, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3789 | cachyt,sbtime,lnscht); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here 69 | setulb( | ~~~~~~^ 70 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver2.cpp:102:19: required from here 102 | write_ref1(" ", x); | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver2.cpp:70:11: required from here 70 | setulb( | ~~~~~~^ 71 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/lbfgs/tst_lbfgs -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgs/tst_lbfgs.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o scitbx/fftpack/timing/fftpack_timer -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/fftpack/timing/fftpack_timer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lomptbx -lm g++ -o scitbx/lbfgsb/dev/driver3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/tests/tst.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/math/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/tests/tst.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/fftpack/timing/test0 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/fftpack/timing/test0.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lomptbx -lm g++ -o scitbx/matrix/tests/tst_cholesky.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests/tst_cholesky.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver3.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver3.cpp:82:19: required from here 82 | write_ref1(" ", wa.get1(j+1,n)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver3.cpp:72:11: required from here 72 | setulb( | ~~~~~~^ 73 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/lbfgsb/dev/driver1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgsb/dev/driver1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o scitbx/matrix/tests/tst_givens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests/tst_givens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/tests/tst -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/math/tests/tst.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/matrix/tests/tst_householder.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests/tst_householder.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgsb/dev/driver2 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgsb/dev/driver2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o scitbx/matrix/tests/tst_svd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests/tst_svd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_givens -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_givens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/serialization/tst_base_256.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/serialization -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/serialization /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/serialization/tst_base_256.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgsb/dev/driver3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgsb/dev/driver3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o scitbx/sparse/tests/tst_sparse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/sparse/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/tests/tst_sparse.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_cholesky -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_cholesky.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/serialization/tst_base_256 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/serialization/tst_base_256.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/tests/tst_reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_svd -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_svd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/tests/tst_special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_householder -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_householder.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o xcif/benchmarks/bench_xcif.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/benchmarks/bench_xcif.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/benchmarks/bench_xcif -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/benchmarks/bench_xcif.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o scitbx/array_family/tst_af_4 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_4.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o xcif/regression/cpp/example_parse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/example_parse.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/example_tokenize.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/example_tokenize.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/tests/tst_sparse -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/sparse/tests/tst_sparse.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o xcif/regression/cpp/fuzz_target.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/fuzz_target.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/example_tokenize -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/example_tokenize.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_data_model.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_data_model.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_reparametrisation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o xcif/regression/cpp/tst_error_handling.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_error_handling.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/fuzz_target -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/fuzz_target.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_infrastructure.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_infrastructure.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_infrastructure -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_infrastructure.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_mapped_file.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_mapped_file.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_data_model -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_data_model.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/example_parse -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/example_parse.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o xcif/regression/cpp/tst_non_strict_mode.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_non_strict_mode.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_numeric.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_numeric.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_error_handling -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_error_handling.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_quoted_string_delimiter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_quoted_string_delimiter.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_mapped_file -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_mapped_file.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_semicolon_field_strict.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_semicolon_field_strict.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_string_view.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_string_view.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_non_strict_mode -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_non_strict_mode.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_special_position -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_special_position.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o xcif/regression/cpp/tst_thread_safety.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_thread_safety.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_string_view -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_string_view.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_numeric -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_numeric.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_tokenizer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_tokenizer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_semicolon_field_strict -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_semicolon_field_strict.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_quoted_string_delimiter -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_quoted_string_delimiter.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_tokenizer -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_tokenizer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_thread_safety -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_thread_safety.o -L/usr/lib -L/usr/lib64 -L/usr/lib/x86_64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread scons: done building targets. usr+sys time: 24.21 seconds wall clock time: 13 minutes 46.05 seconds (826.05 seconds total) iconv -f ISO-8859-1 -t UTF-8 cctbx/eltbx/covalent_radii.h > covalent_radii.h mv covalent_radii.h cctbx/eltbx/covalent_radii.h dh_auto_build -- --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/*_ext.so {build_dir}_/scitbx/array_family/boost_python/regression_test_ext.so {build_dir}" pybuild --build -i python{version} -p 3.14 --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/*_ext.so {build_dir}_/scitbx/array_family/boost_python/regression_test_ext.so {build_dir}" --parallel=6 I: pybuild base:385: cp -f '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build'_/lib/*_ext.so '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build'_/scitbx/array_family/boost_python/regression_test_ext.so '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build' dh_auto_build -- --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/dxtbx_flumpy.so {build_dir}" pybuild --build -i python{version} -p 3.14 --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/dxtbx_flumpy.so {build_dir}" --parallel=6 I: pybuild base:385: cp -f '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build'_/lib/dxtbx_flumpy.so '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build' make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' # DOES NOT WORK, source code must be modified in order to find the expected # /usr/share/cctbx libtbx_env file during the build process make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild rm -f -- debian/libcctbx0.substvars debian/libcctbx-dev.substvars debian/python3-cctbx.substvars rm -fr -- debian/.debhelper/generated/libcctbx0/ debian/libcctbx0/ debian/tmp/ debian/.debhelper/generated/libcctbx-dev/ debian/libcctbx-dev/ debian/.debhelper/generated/python3-cctbx/ debian/python3-cctbx/ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' # Python modules dh_auto_install -- --name cctbx install -m0755 -d /build/reproducible-path/cctbx-2026.9\+ds2\+\~3.30.1\+ds1/debian/tmp pybuild --install -i python{version} -p 3.14 --name cctbx --parallel=6 I: pybuild plugin_pyproject:199: Copying package built for python3.14 to destdir dh_auto_install --sourcedirectory=dxtbx -- --name dxtbx install -m0755 -d /build/reproducible-path/cctbx-2026.9\+ds2\+\~3.30.1\+ds1/debian/tmp pybuild --install -i python{version} -p 3.14 --name dxtbx --dir dxtbx --parallel=6 I: pybuild plugin_pyproject:199: Copying package built for python3.14 to destdir # pybuild does not set properly dest-dir when name is set. So merge both installation under debian/tmp install -d debian/tmp rsync -av --ignore-existing debian/python3-cctbx/ debian/python3-dxtbx/ debian/tmp sending incremental file list usr/ usr/bin/ usr/bin/cxi.image2pickle usr/bin/cxi.image_average usr/bin/dev.dxtbx.debug_memory usr/bin/dev.dxtbx.image_availability usr/bin/dev.dxtbx.read_sequence usr/bin/dev.dxtbx.simulate_collection usr/bin/dxtbx.any2nexus usr/bin/dxtbx.depends_on usr/bin/dxtbx.detector_superpose usr/bin/dxtbx.display_parallax_correction usr/bin/dxtbx.dlsnxs2cbf usr/bin/dxtbx.image2pickle usr/bin/dxtbx.image_average usr/bin/dxtbx.install_format usr/bin/dxtbx.overload usr/bin/dxtbx.plot_detector_models usr/bin/dxtbx.print_header usr/bin/dxtbx.print_matching_images usr/bin/dxtbx.radial_average usr/bin/dxtbx.saturation usr/bin/dxtbx.show_mask_info usr/bin/dxtbx.show_matching_formats usr/bin/dxtbx.show_registry usr/lib/ usr/lib/python3.14/ usr/lib/python3.14/dist-packages/ usr/lib/python3.14/dist-packages/annlib_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_boost_thread_test_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_maximum_clique_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_metric_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_utility_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_python_streambuf_test_ext.so usr/lib/python3.14/dist-packages/boost_optional_ext.so usr/lib/python3.14/dist-packages/boost_python_hybrid_times_ext.so usr/lib/python3.14/dist-packages/boost_python_meta_ext.so usr/lib/python3.14/dist-packages/boost_rational_ext.so usr/lib/python3.14/dist-packages/boost_tuple_ext.so usr/lib/python3.14/dist-packages/cbflib_ext.so usr/lib/python3.14/dist-packages/cctbx_adp_restraints_ext.so usr/lib/python3.14/dist-packages/cctbx_adptbx_ext.so usr/lib/python3.14/dist-packages/cctbx_anharmonic_ext.so usr/lib/python3.14/dist-packages/cctbx_array_family_flex_ext.so usr/lib/python3.14/dist-packages/cctbx_asymmetric_map_ext.so usr/lib/python3.14/dist-packages/cctbx_covariance_ext.so usr/lib/python3.14/dist-packages/cctbx_crystal_ext.so usr/lib/python3.14/dist-packages/cctbx_dmtbx_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_chemical_elements_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_covalent_radii_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_fp_fdp_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_henke_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_icsd_radii_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_neutron_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_sasaki_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_tiny_pse_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_wavelengths_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_xray_scattering_ext.so usr/lib/python3.14/dist-packages/cctbx_emma_ext.so usr/lib/python3.14/dist-packages/cctbx_french_wilson_ext.so usr/lib/python3.14/dist-packages/cctbx_geometry_ext.so usr/lib/python3.14/dist-packages/cctbx_geometry_restraints_ext.so usr/lib/python3.14/dist-packages/cctbx_maptbx_bcr_bcr_ext.so usr/lib/python3.14/dist-packages/cctbx_maptbx_ext.so usr/lib/python3.14/dist-packages/cctbx_masks_ext.so usr/lib/python3.14/dist-packages/cctbx_math_ext.so usr/lib/python3.14/dist-packages/cctbx_merging_ext.so usr/lib/python3.14/dist-packages/cctbx_miller_ext.so usr/lib/python3.14/dist-packages/cctbx_multipolar_ext.so usr/lib/python3.14/dist-packages/cctbx_orientation_ext.so usr/lib/python3.14/dist-packages/cctbx_sgtbx_asu_ext.so usr/lib/python3.14/dist-packages/cctbx_sgtbx_ext.so usr/lib/python3.14/dist-packages/cctbx_statistics_ext.so usr/lib/python3.14/dist-packages/cctbx_symmetry_search_ext.so usr/lib/python3.14/dist-packages/cctbx_translation_search_ext.so usr/lib/python3.14/dist-packages/cctbx_uctbx_ext.so usr/lib/python3.14/dist-packages/cctbx_xray_ext.so usr/lib/python3.14/dist-packages/cctbx_xray_observations_ext.so usr/lib/python3.14/dist-packages/cma_es_ext.so usr/lib/python3.14/dist-packages/determine_unit_cell_ext.so usr/lib/python3.14/dist-packages/dxtbx_ext.so usr/lib/python3.14/dist-packages/dxtbx_flumpy.so usr/lib/python3.14/dist-packages/dxtbx_format_image_ext.so usr/lib/python3.14/dist-packages/dxtbx_format_nexus_ext.so usr/lib/python3.14/dist-packages/dxtbx_imageset_ext.so usr/lib/python3.14/dist-packages/dxtbx_masking_ext.so usr/lib/python3.14/dist-packages/dxtbx_model_ext.so usr/lib/python3.14/dist-packages/fable_ext.so usr/lib/python3.14/dist-packages/gltbx_fonts_ext.so usr/lib/python3.14/dist-packages/gltbx_gl_ext.so usr/lib/python3.14/dist-packages/gltbx_glu_ext.so usr/lib/python3.14/dist-packages/gltbx_quadrics_ext.so usr/lib/python3.14/dist-packages/gltbx_util_ext.so usr/lib/python3.14/dist-packages/gltbx_viewer_utils_ext.so usr/lib/python3.14/dist-packages/iotbx_ccp4_map_ext.so usr/lib/python3.14/dist-packages/iotbx_cif_ext.so usr/lib/python3.14/dist-packages/iotbx_detectors_bruker_ext.so usr/lib/python3.14/dist-packages/iotbx_detectors_ext.so usr/lib/python3.14/dist-packages/iotbx_dsn6_map_ext.so usr/lib/python3.14/dist-packages/iotbx_dtrek_ext.so usr/lib/python3.14/dist-packages/iotbx_mtz_ext.so usr/lib/python3.14/dist-packages/iotbx_pdb_ext.so usr/lib/python3.14/dist-packages/iotbx_pdb_hierarchy_ext.so usr/lib/python3.14/dist-packages/iotbx_scalepack_ext.so usr/lib/python3.14/dist-packages/iotbx_shelx_ext.so usr/lib/python3.14/dist-packages/iotbx_wildcard_ext.so usr/lib/python3.14/dist-packages/iotbx_xplor_ext.so usr/lib/python3.14/dist-packages/mmtbx_alignment_ext.so usr/lib/python3.14/dist-packages/mmtbx_building_loop_closure_ext.so usr/lib/python3.14/dist-packages/mmtbx_bulk_solvent_ext.so usr/lib/python3.14/dist-packages/mmtbx_den_restraints_ext.so usr/lib/python3.14/dist-packages/mmtbx_dssp_ext.so usr/lib/python3.14/dist-packages/mmtbx_dynamics_ext.so usr/lib/python3.14/dist-packages/mmtbx_f_model_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_asa_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_clash_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_indexing_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_primitive_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_shared_types_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.so usr/lib/python3.14/dist-packages/mmtbx_hydrogens_ext.so usr/lib/python3.14/dist-packages/mmtbx_masks_ext.so usr/lib/python3.14/dist-packages/mmtbx_max_lik_ext.so usr/lib/python3.14/dist-packages/mmtbx_mosaic_ext.so usr/lib/python3.14/dist-packages/mmtbx_ncs_cartesian_restraints_ext.so usr/lib/python3.14/dist-packages/mmtbx_ncs_ext.so usr/lib/python3.14/dist-packages/mmtbx_pair_interaction_ext.so usr/lib/python3.14/dist-packages/mmtbx_probe_ext.so usr/lib/python3.14/dist-packages/mmtbx_ramachandran_restraints_ext.so usr/lib/python3.14/dist-packages/mmtbx_reduce_ext.so usr/lib/python3.14/dist-packages/mmtbx_reference_coordinate_ext.so usr/lib/python3.14/dist-packages/mmtbx_rotamer_fit_ext.so usr/lib/python3.14/dist-packages/mmtbx_rsr_ext.so usr/lib/python3.14/dist-packages/mmtbx_scaling_ext.so usr/lib/python3.14/dist-packages/mmtbx_secondary_structure_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_decompose_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_optimise_amplitudes_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_utils_ext.so usr/lib/python3.14/dist-packages/mmtbx_utils_ext.so usr/lib/python3.14/dist-packages/mmtbx_validation_ramachandran_ext.so usr/lib/python3.14/dist-packages/omptbx_ext.so usr/lib/python3.14/dist-packages/regression_test_ext.so usr/lib/python3.14/dist-packages/rstbx_array_family_flex_ext.so usr/lib/python3.14/dist-packages/rstbx_bandpass_ext.so usr/lib/python3.14/dist-packages/rstbx_bpcx_detector_model_ext.so usr/lib/python3.14/dist-packages/rstbx_diffraction_fastbragg_ext.so usr/lib/python3.14/dist-packages/rstbx_ext.so usr/lib/python3.14/dist-packages/rstbx_indexing_api_ext.so usr/lib/python3.14/dist-packages/rstbx_integration_ext.so usr/lib/python3.14/dist-packages/rstbx_simage_ext.so usr/lib/python3.14/dist-packages/rstbx_simulation_ext.so usr/lib/python3.14/dist-packages/rstbx_symmetry_constraints_ext.so usr/lib/python3.14/dist-packages/scitbx_array_family_flex_ext.so 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usr/lib/python3.14/dist-packages/cctbx/development/electron_density_sampling.py usr/lib/python3.14/dist-packages/cctbx/development/fmt_utils.py usr/lib/python3.14/dist-packages/cctbx/development/github.py usr/lib/python3.14/dist-packages/cctbx/development/make_cns_input.py usr/lib/python3.14/dist-packages/cctbx/development/make_settings.py usr/lib/python3.14/dist-packages/cctbx/development/random_structure.py usr/lib/python3.14/dist-packages/cctbx/development/run_shelx.py usr/lib/python3.14/dist-packages/cctbx/development/run_shelx76.py usr/lib/python3.14/dist-packages/cctbx/development/space_group_option_parser.py usr/lib/python3.14/dist-packages/cctbx/development/structure_factor_utils.py usr/lib/python3.14/dist-packages/cctbx/development/tst_cns_epsilon.py usr/lib/python3.14/dist-packages/cctbx/development/tst_cns_hl.py usr/lib/python3.14/dist-packages/cctbx/eltbx/ usr/lib/python3.14/dist-packages/cctbx/eltbx/__init__.py 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usr/lib/python3.14/dist-packages/cctbx/examples/map_skewness.py usr/lib/python3.14/dist-packages/cctbx/examples/maximum_subgroups.py usr/lib/python3.14/dist-packages/cctbx/examples/miller_common_sets.py usr/lib/python3.14/dist-packages/cctbx/examples/miller_transform.py usr/lib/python3.14/dist-packages/cctbx/examples/neutron_structure_factors.py usr/lib/python3.14/dist-packages/cctbx/examples/phase_o_phrenia.py usr/lib/python3.14/dist-packages/cctbx/examples/quartz_structure.py usr/lib/python3.14/dist-packages/cctbx/examples/random_f_calc.py usr/lib/python3.14/dist-packages/cctbx/examples/random_puckers.py usr/lib/python3.14/dist-packages/cctbx/examples/reduced_cell_two_folds.py usr/lib/python3.14/dist-packages/cctbx/examples/site_symmetry_constraints.py usr/lib/python3.14/dist-packages/cctbx/examples/site_symmetry_table.py usr/lib/python3.14/dist-packages/cctbx/examples/space_group_matrices.py usr/lib/python3.14/dist-packages/cctbx/examples/space_subgroups.py usr/lib/python3.14/dist-packages/cctbx/examples/steve_collins.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives_2.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives_3.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives_4.py usr/lib/python3.14/dist-packages/cctbx/examples/sub_group_graph.py usr/lib/python3.14/dist-packages/cctbx/examples/symops_530.py usr/lib/python3.14/dist-packages/cctbx/examples/trigonal_r_vs_tetragonal_i.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_exp_i_alpha_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_g_exp_i_alpha_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_phase_o_phrenia.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_space_subgroups.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives_2.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives_3.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives_4.py usr/lib/python3.14/dist-packages/cctbx/examples/unit_cell_minimizers.py usr/lib/python3.14/dist-packages/cctbx/examples/unit_cell_refinement.py usr/lib/python3.14/dist-packages/cctbx/examples/view_fft_map.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/ usr/lib/python3.14/dist-packages/cctbx/examples/merging/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/data_subset.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/data_utilities.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/show_results.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/sigma_correction.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/task4.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/test1.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/test_cc_half.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/test_levenberg_sparse.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/tst_permutations.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/ usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/join.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/per_lattice_postrefinement.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/scale.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/ usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/site_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/sites_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/u_star_derivatives.py usr/lib/python3.14/dist-packages/cctbx/geometry/ usr/lib/python3.14/dist-packages/cctbx/geometry/__init__.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/ usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/__init__.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/auto_linking_types.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/base_geometry.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/distance_least_squares.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/energies.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/flags.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/lbfgs.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/linking_class.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/manager.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/process_nonbonded_proxies.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/standard_cif_links.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_ext.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_motif.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py usr/lib/python3.14/dist-packages/cctbx/macro_mol/ usr/lib/python3.14/dist-packages/cctbx/macro_mol/__init__.py usr/lib/python3.14/dist-packages/cctbx/macro_mol/rotation_parameters.py usr/lib/python3.14/dist-packages/cctbx/maptbx/ usr/lib/python3.14/dist-packages/cctbx/maptbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/maptbx/auto_sharpen.py usr/lib/python3.14/dist-packages/cctbx/maptbx/box.py usr/lib/python3.14/dist-packages/cctbx/maptbx/fsc_curve.py usr/lib/python3.14/dist-packages/cctbx/maptbx/map_symmetry.py usr/lib/python3.14/dist-packages/cctbx/maptbx/mask.py usr/lib/python3.14/dist-packages/cctbx/maptbx/mem.py usr/lib/python3.14/dist-packages/cctbx/maptbx/minimization.py usr/lib/python3.14/dist-packages/cctbx/maptbx/prepare_map_for_docking.py usr/lib/python3.14/dist-packages/cctbx/maptbx/prepare_map_for_refinement.py usr/lib/python3.14/dist-packages/cctbx/maptbx/qscore.py usr/lib/python3.14/dist-packages/cctbx/maptbx/real_space_refinement_simple.py usr/lib/python3.14/dist-packages/cctbx/maptbx/refine_scales_errors.py usr/lib/python3.14/dist-packages/cctbx/maptbx/refine_sharpening.py usr/lib/python3.14/dist-packages/cctbx/maptbx/resolution_from_map_and_model.py usr/lib/python3.14/dist-packages/cctbx/maptbx/segment_and_split_map.py usr/lib/python3.14/dist-packages/cctbx/maptbx/servalcat_difference_map.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_MapPeakLocator.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_asymmetric_map.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_atom_curves.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_bcr.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_ccp.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_interpolation.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_interpolation_2.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_loft.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_mask.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_qscore.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_target_and_gradients.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/ usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/__init__.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/bcr.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/compute_tables.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/qmap.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_adp_refine.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_example.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_qmap_02.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_table.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_two_atoms.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_vrm.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_vrm2.py usr/lib/python3.14/dist-packages/cctbx/masks/ usr/lib/python3.14/dist-packages/cctbx/masks/__init__.py usr/lib/python3.14/dist-packages/cctbx/merging/ usr/lib/python3.14/dist-packages/cctbx/merging/__init__.py usr/lib/python3.14/dist-packages/cctbx/merging/brehm_diederichs.py usr/lib/python3.14/dist-packages/cctbx/miller/ usr/lib/python3.14/dist-packages/cctbx/miller/__init__.py usr/lib/python3.14/dist-packages/cctbx/miller/display.py usr/lib/python3.14/dist-packages/cctbx/miller/reindexing.py usr/lib/python3.14/dist-packages/cctbx/miller/tst_map_to_asu_isym.py usr/lib/python3.14/dist-packages/cctbx/miller/tst_reindexing.py usr/lib/python3.14/dist-packages/cctbx/neutron/ usr/lib/python3.14/dist-packages/cctbx/neutron/__init__.py usr/lib/python3.14/dist-packages/cctbx/omz/ usr/lib/python3.14/dist-packages/cctbx/omz/__init__.py usr/lib/python3.14/dist-packages/cctbx/omz/bfgs.py usr/lib/python3.14/dist-packages/cctbx/omz/cif_refine.py usr/lib/python3.14/dist-packages/cctbx/omz/cod_refine.py usr/lib/python3.14/dist-packages/cctbx/omz/cod_select_and_pickle.py usr/lib/python3.14/dist-packages/cctbx/omz/dev.py usr/lib/python3.14/dist-packages/cctbx/omz/eval_iso_vs_refined.py usr/lib/python3.14/dist-packages/cctbx/omz/pdb_dev.py usr/lib/python3.14/dist-packages/cctbx/omz/tardy_adaptor.py usr/lib/python3.14/dist-packages/cctbx/omz/tst_bfgs.py usr/lib/python3.14/dist-packages/cctbx/omz/tst_dev.py usr/lib/python3.14/dist-packages/cctbx/regression/ usr/lib/python3.14/dist-packages/cctbx/regression/__init__.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_adp_constraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_amplitude_normalisation.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_change_basis.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_connectivity.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_connectivity_allsym.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_coordination_sequences.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_create_models_or_maps.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_crystal.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_crystal_close_packing.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_diffuse.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_direct_scaling.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_direct_space_asu.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_emma.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_expand_to_p1.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_f_model.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_fast_nv1995.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_find_best_cell.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_french_wilson.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_geometry_restraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_geometry_restraints_2.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grm_modifications.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grm_modifications_rm.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grm_pickling.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grouped_data.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_krivy_gruber.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_loc_res.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_map_is_periodic.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_maptbx_box.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_maptbx_mask.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_match_bijvoet_mates.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_math_module.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_mem.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_mem_2.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_data_manipulation.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_fft_map.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_lookup_utils.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_statistics.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_niggli_reduction_cpp.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_pair_asu_table.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_pointgroup_tools.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_r_free_utils.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_refine_xray_curvs.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_reflection_statistics.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sampled_model_density.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_denominators.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_harker.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_show_cosets.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sphericity.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_statistics_graphs.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_triplet_generator.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_twin_target.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_wavelength_units.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_web_change_basis.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_weighting_schemes.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_wilson_plot.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_derivatives.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_fast_gradients.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_minimization.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_minimization_failure.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_target_functors.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/ usr/lib/python3.14/dist-packages/cctbx/sgtbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/bravais_types.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/cosets.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/harker.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/lattice_symmetry.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/literal_description.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/plane_groups.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/pointgroup_tools.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/reticular_pg_tools.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/reticular_twin_laws.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/show_cosets.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/sub_lattice_tools.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/subgroups.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/symbol_confidence.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/sys_abs_equiv.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/ usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/__init__.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/check_redundancies.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/cut_plane.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/facet_analysis.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/reference_table.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/short_cuts.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/ usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/__init__.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py usr/lib/python3.14/dist-packages/cctbx/source_generators/ usr/lib/python3.14/dist-packages/cctbx/source_generators/__init__.py usr/lib/python3.14/dist-packages/cctbx/source_generators/flex_fwd_h.py usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/ usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/generate_henke_cpp.py usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/generate_sasaki_cpp.py usr/lib/python3.14/dist-packages/cctbx/uctbx/ usr/lib/python3.14/dist-packages/cctbx/uctbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/uctbx/gruber_1973.py usr/lib/python3.14/dist-packages/cctbx/uctbx/gruber_1973_table_1.py usr/lib/python3.14/dist-packages/cctbx/uctbx/krivy_gruber_1976.py usr/lib/python3.14/dist-packages/cctbx/uctbx/reduction_base.py usr/lib/python3.14/dist-packages/cctbx/uctbx/determine_unit_cell/ usr/lib/python3.14/dist-packages/cctbx/uctbx/determine_unit_cell/__init__.py usr/lib/python3.14/dist-packages/cctbx/web/ usr/lib/python3.14/dist-packages/cctbx/web/__init__.py usr/lib/python3.14/dist-packages/cctbx/web/all_axes.py usr/lib/python3.14/dist-packages/cctbx/web/browse_settings.py usr/lib/python3.14/dist-packages/cctbx/web/cgi_utils.py usr/lib/python3.14/dist-packages/cctbx/web/change_basis.py usr/lib/python3.14/dist-packages/cctbx/web/change_hand.py usr/lib/python3.14/dist-packages/cctbx/web/change_setting.py usr/lib/python3.14/dist-packages/cctbx/web/dispatcher.py usr/lib/python3.14/dist-packages/cctbx/web/emma.py usr/lib/python3.14/dist-packages/cctbx/web/explore_symmetry.py usr/lib/python3.14/dist-packages/cctbx/web/frac_cart.py usr/lib/python3.14/dist-packages/cctbx/web/io_utils.py usr/lib/python3.14/dist-packages/cctbx/web/iotbx_cif_validate.py usr/lib/python3.14/dist-packages/cctbx/web/lattice_symmetry.py usr/lib/python3.14/dist-packages/cctbx/web/libtbx_help.py usr/lib/python3.14/dist-packages/cctbx/web/multiple_cell.py usr/lib/python3.14/dist-packages/cctbx/web/phase_o_phrenia.py usr/lib/python3.14/dist-packages/cctbx/web/replay.py usr/lib/python3.14/dist-packages/cctbx/web/shelx.py usr/lib/python3.14/dist-packages/cctbx/web/structure_factors.py usr/lib/python3.14/dist-packages/cctbx/web/structure_factors_pdb.py usr/lib/python3.14/dist-packages/cctbx/web/wyckoff.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/ usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/__init__.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/guide_to_notation.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/jv_asu.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/jv_index.py 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usr/lib/python3.14/dist-packages/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/run_pdoc_cctbx_api.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/tst_comment_to_docstring.py usr/lib/python3.14/dist-packages/cctbx_website/regression/ usr/lib/python3.14/dist-packages/cctbx_website/regression/__init__.py usr/lib/python3.14/dist-packages/cctbx_website/regression/exercise.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_10_doc_programming_tips_1.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_11_script_1.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_12_script_compare_ss.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_13_script_ideal_ss.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_15_doc_models_hierarchy.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_17_script_rfactors.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_18_doc_programming_tips_2.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_19_doc_programming_tips_3.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_1_template.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_2_doc_hlo_intro.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_3_doc_hlo_model_manager.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_4_doc_hlo_data_manager.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_5_doc_hlo_map_manager.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_7_doc_low_flex_advanced.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_8_doc_maps_intro.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_9_doc_maps_boxing.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_py_from_html.py usr/lib/python3.14/dist-packages/cma_es/ usr/lib/python3.14/dist-packages/cma_es/__init__.py usr/lib/python3.14/dist-packages/cma_es/cma_es_interface.py usr/lib/python3.14/dist-packages/cma_es/run_tests.py usr/lib/python3.14/dist-packages/cma_es/tst_cma_es.py usr/lib/python3.14/dist-packages/cootbx/ usr/lib/python3.14/dist-packages/cootbx/__init__.py usr/lib/python3.14/dist-packages/cootbx/hydrogens_button.py usr/lib/python3.14/dist-packages/cootbx/interactive_edit.py usr/lib/python3.14/dist-packages/cootbx/ligand_checklist.py usr/lib/python3.14/dist-packages/cootbx/simple_zoom_list.py usr/lib/python3.14/dist-packages/cootbx/validation_lists.py usr/lib/python3.14/dist-packages/cootbx/view_refinement.py 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usr/lib/python3.14/dist-packages/dxtbx/dxtbx_format_image_ext.pyi usr/lib/python3.14/dist-packages/dxtbx/dxtbx_format_nexus_ext.pyi usr/lib/python3.14/dist-packages/dxtbx/dxtbx_imageset_ext.pyi usr/lib/python3.14/dist-packages/dxtbx/dxtbx_masking_ext.pyi usr/lib/python3.14/dist-packages/dxtbx/dxtbx_model_ext.pyi usr/lib/python3.14/dist-packages/dxtbx/error.h usr/lib/python3.14/dist-packages/dxtbx/ext.py usr/lib/python3.14/dist-packages/dxtbx/filecache.py usr/lib/python3.14/dist-packages/dxtbx/filecache_controller.py usr/lib/python3.14/dist-packages/dxtbx/flumpy.py usr/lib/python3.14/dist-packages/dxtbx/imageset.h usr/lib/python3.14/dist-packages/dxtbx/imageset.py usr/lib/python3.14/dist-packages/dxtbx/py.typed usr/lib/python3.14/dist-packages/dxtbx/sequence_filenames.py usr/lib/python3.14/dist-packages/dxtbx/version.py usr/lib/python3.14/dist-packages/dxtbx/array_family/ usr/lib/python3.14/dist-packages/dxtbx/array_family/flex_table.h usr/lib/python3.14/dist-packages/dxtbx/array_family/flex_table_suite.h usr/lib/python3.14/dist-packages/dxtbx/array_family/ref_pickle_double_buffered.h usr/lib/python3.14/dist-packages/dxtbx/boost_python/ usr/lib/python3.14/dist-packages/dxtbx/boost_python/compression.cc usr/lib/python3.14/dist-packages/dxtbx/boost_python/compression.h usr/lib/python3.14/dist-packages/dxtbx/boost_python/ext.cpp usr/lib/python3.14/dist-packages/dxtbx/boost_python/flumpy.cc usr/lib/python3.14/dist-packages/dxtbx/boost_python/imageset_ext.cc usr/lib/python3.14/dist-packages/dxtbx/command_line/ usr/lib/python3.14/dist-packages/dxtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/dxtbx/command_line/any2nexus.py usr/lib/python3.14/dist-packages/dxtbx/command_line/debug_memory.py usr/lib/python3.14/dist-packages/dxtbx/command_line/depends_on.py usr/lib/python3.14/dist-packages/dxtbx/command_line/detector_superpose.py usr/lib/python3.14/dist-packages/dxtbx/command_line/display_parallax_correction.py usr/lib/python3.14/dist-packages/dxtbx/command_line/dlsnxs2cbf.py usr/lib/python3.14/dist-packages/dxtbx/command_line/image2pickle.py usr/lib/python3.14/dist-packages/dxtbx/command_line/image_availability.py usr/lib/python3.14/dist-packages/dxtbx/command_line/image_average.py usr/lib/python3.14/dist-packages/dxtbx/command_line/install_format.py usr/lib/python3.14/dist-packages/dxtbx/command_line/overload.py usr/lib/python3.14/dist-packages/dxtbx/command_line/plot_detector_models.py usr/lib/python3.14/dist-packages/dxtbx/command_line/print_header.py usr/lib/python3.14/dist-packages/dxtbx/command_line/print_matching_images.py usr/lib/python3.14/dist-packages/dxtbx/command_line/radial_average.py usr/lib/python3.14/dist-packages/dxtbx/command_line/read_sequence.py usr/lib/python3.14/dist-packages/dxtbx/command_line/saturation.py usr/lib/python3.14/dist-packages/dxtbx/command_line/show_mask_info.py usr/lib/python3.14/dist-packages/dxtbx/command_line/show_matching_formats.py 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usr/lib/python3.14/dist-packages/iotbx/bioinformatics/local_blast.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/ncbi_blast_xml.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/pdb_info.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/pubmed.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/structure.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/xmlbuild.py usr/lib/python3.14/dist-packages/iotbx/ccp4_map/ usr/lib/python3.14/dist-packages/iotbx/ccp4_map/__init__.py usr/lib/python3.14/dist-packages/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py usr/lib/python3.14/dist-packages/iotbx/ccp4_map/tst.py usr/lib/python3.14/dist-packages/iotbx/cif/ usr/lib/python3.14/dist-packages/iotbx/cif/__init__.py usr/lib/python3.14/dist-packages/iotbx/cif/builders.py usr/lib/python3.14/dist-packages/iotbx/cif/citations.py usr/lib/python3.14/dist-packages/iotbx/cif/cod_tools.py usr/lib/python3.14/dist-packages/iotbx/cif/crystal_symmetry_from_cif.py usr/lib/python3.14/dist-packages/iotbx/cif/errors.py usr/lib/python3.14/dist-packages/iotbx/cif/geometry.py usr/lib/python3.14/dist-packages/iotbx/cif/model.py usr/lib/python3.14/dist-packages/iotbx/cif/restraint_file_merge.py usr/lib/python3.14/dist-packages/iotbx/cif/restraints.py usr/lib/python3.14/dist-packages/iotbx/cif/validation.py usr/lib/python3.14/dist-packages/iotbx/cns/ usr/lib/python3.14/dist-packages/iotbx/cns/__init__.py usr/lib/python3.14/dist-packages/iotbx/cns/crystal_symmetry_from_inp.py usr/lib/python3.14/dist-packages/iotbx/cns/crystal_symmetry_from_sdb.py usr/lib/python3.14/dist-packages/iotbx/cns/crystal_symmetry_utils.py usr/lib/python3.14/dist-packages/iotbx/cns/index_fobs_sigma_reader.py usr/lib/python3.14/dist-packages/iotbx/cns/miller_array.py usr/lib/python3.14/dist-packages/iotbx/cns/pdb_remarks.py usr/lib/python3.14/dist-packages/iotbx/cns/reflection_reader.py usr/lib/python3.14/dist-packages/iotbx/cns/sdb_reader.py usr/lib/python3.14/dist-packages/iotbx/cns/sdb_writer.py usr/lib/python3.14/dist-packages/iotbx/cns/space_group_symbols.py usr/lib/python3.14/dist-packages/iotbx/cns/tst_cns.py usr/lib/python3.14/dist-packages/iotbx/cns/xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/ usr/lib/python3.14/dist-packages/iotbx/command_line/__init__.py usr/lib/python3.14/dist-packages/iotbx/command_line/biomt_reconstruction.py usr/lib/python3.14/dist-packages/iotbx/command_line/blast_pdb.py usr/lib/python3.14/dist-packages/iotbx/command_line/build_phil_cache.py usr/lib/python3.14/dist-packages/iotbx/command_line/cbf_read.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif.as_miller_arrays.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif.as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif.validate.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif_as_pdb.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns.reflection_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns.sdb_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns.transfer_crystal_symmetry.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns_as_mtz.py usr/lib/python3.14/dist-packages/iotbx/command_line/crystal_symmetry_from_any.py usr/lib/python3.14/dist-packages/iotbx/command_line/csv_as_mtz.py usr/lib/python3.14/dist-packages/iotbx/command_line/dano_as_amplitudes.py usr/lib/python3.14/dist-packages/iotbx/command_line/detector_image_as_png.py usr/lib/python3.14/dist-packages/iotbx/command_line/distance_least_squares.py usr/lib/python3.14/dist-packages/iotbx/command_line/dtrek.to_cns.py usr/lib/python3.14/dist-packages/iotbx/command_line/effective_resolution.py usr/lib/python3.14/dist-packages/iotbx/command_line/emma.py usr/lib/python3.14/dist-packages/iotbx/command_line/explore_metric_symmetry.py usr/lib/python3.14/dist-packages/iotbx/command_line/export_scalepack_unmerged.py usr/lib/python3.14/dist-packages/iotbx/command_line/file_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/flip_symmetric_amino_acids.py usr/lib/python3.14/dist-packages/iotbx/command_line/french_wilson.py usr/lib/python3.14/dist-packages/iotbx/command_line/get_pubmed_citation.py usr/lib/python3.14/dist-packages/iotbx/command_line/lattice_symmetry.py usr/lib/python3.14/dist-packages/iotbx/command_line/merging_statistics.py usr/lib/python3.14/dist-packages/iotbx/command_line/mtrix_reconstruction.py usr/lib/python3.14/dist-packages/iotbx/command_line/mtz.dump.py usr/lib/python3.14/dist-packages/iotbx/command_line/mtz_as_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/patterson_map.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.b_factor_stats.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.box_around_molecule.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.hierarchy.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.insert_scale_records.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.join_fragment_files.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.print_sequence.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.superpose_atoms_by_name.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.superpose_centers_of_mass.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_add_conformations.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_as_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_as_fasta.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_cif_conversion.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_get_citation.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_labels_comparison.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_labels_diff.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_remediator.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_show_connectivity.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_split_models.py usr/lib/python3.14/dist-packages/iotbx/command_line/phil.py usr/lib/python3.14/dist-packages/iotbx/command_line/poscar_as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/r_free_flags_accumulation.py usr/lib/python3.14/dist-packages/iotbx/command_line/r_free_flags_as_cns.py usr/lib/python3.14/dist-packages/iotbx/command_line/r_free_flags_completion_simple.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_file_converter.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_file_editor.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_file_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_statistics.py usr/lib/python3.14/dist-packages/iotbx/command_line/reindex.py usr/lib/python3.14/dist-packages/iotbx/command_line/shelx.as_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/shelx.as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/shelx.dump_as_python.py usr/lib/python3.14/dist-packages/iotbx/command_line/show_distances.py usr/lib/python3.14/dist-packages/iotbx/command_line/show_systematic_absences.py usr/lib/python3.14/dist-packages/iotbx/command_line/simple_map_coefficients.py usr/lib/python3.14/dist-packages/iotbx/command_line/sort_atoms.py usr/lib/python3.14/dist-packages/iotbx/command_line/split_data_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/symmetry_search.py usr/lib/python3.14/dist-packages/iotbx/command_line/unique_with_biomt.py usr/lib/python3.14/dist-packages/iotbx/command_line/xplor.map.show_summary.py usr/lib/python3.14/dist-packages/iotbx/data_manager/ usr/lib/python3.14/dist-packages/iotbx/data_manager/__init__.py usr/lib/python3.14/dist-packages/iotbx/data_manager/common.py usr/lib/python3.14/dist-packages/iotbx/data_manager/json.py usr/lib/python3.14/dist-packages/iotbx/data_manager/map_coefficients.py usr/lib/python3.14/dist-packages/iotbx/data_manager/miller_array.py usr/lib/python3.14/dist-packages/iotbx/data_manager/model.py usr/lib/python3.14/dist-packages/iotbx/data_manager/ncs_spec.py usr/lib/python3.14/dist-packages/iotbx/data_manager/phil.py usr/lib/python3.14/dist-packages/iotbx/data_manager/real_map.py usr/lib/python3.14/dist-packages/iotbx/data_manager/restraint.py usr/lib/python3.14/dist-packages/iotbx/data_manager/sequence.py usr/lib/python3.14/dist-packages/iotbx/data_manager/yaml.py usr/lib/python3.14/dist-packages/iotbx/detectors/ usr/lib/python3.14/dist-packages/iotbx/detectors/__init__.py usr/lib/python3.14/dist-packages/iotbx/detectors/active_area_filter.py usr/lib/python3.14/dist-packages/iotbx/detectors/adsc.py usr/lib/python3.14/dist-packages/iotbx/detectors/adsc_minicbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/adsc_module.py usr/lib/python3.14/dist-packages/iotbx/detectors/beam_center_convention.py usr/lib/python3.14/dist-packages/iotbx/detectors/bruker.py usr/lib/python3.14/dist-packages/iotbx/detectors/cbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/cspad_detector_formats.py usr/lib/python3.14/dist-packages/iotbx/detectors/detectorbase.py usr/lib/python3.14/dist-packages/iotbx/detectors/dtrek.py usr/lib/python3.14/dist-packages/iotbx/detectors/edf.py usr/lib/python3.14/dist-packages/iotbx/detectors/eiger.py usr/lib/python3.14/dist-packages/iotbx/detectors/eiger_minicbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/generic_detector.py usr/lib/python3.14/dist-packages/iotbx/detectors/hamamatsu.py usr/lib/python3.14/dist-packages/iotbx/detectors/image_from_http_request.py usr/lib/python3.14/dist-packages/iotbx/detectors/macscience.py usr/lib/python3.14/dist-packages/iotbx/detectors/mar.py usr/lib/python3.14/dist-packages/iotbx/detectors/marIP.py usr/lib/python3.14/dist-packages/iotbx/detectors/noir.py usr/lib/python3.14/dist-packages/iotbx/detectors/npy.py usr/lib/python3.14/dist-packages/iotbx/detectors/pilatus_minicbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/pilatus_slice.py usr/lib/python3.14/dist-packages/iotbx/detectors/raxis.py usr/lib/python3.14/dist-packages/iotbx/detectors/raxis_nonsquare.py usr/lib/python3.14/dist-packages/iotbx/detectors/raxisbase.py usr/lib/python3.14/dist-packages/iotbx/detectors/saturn.py usr/lib/python3.14/dist-packages/iotbx/detectors/test_mar.py usr/lib/python3.14/dist-packages/iotbx/detectors/test_raxis2.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_adsc.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_cbf_comp_read_meth.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_debug_write.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_detectors.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_py_cbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/url_support.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/ usr/lib/python3.14/dist-packages/iotbx/detectors/context/__init__.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/camera_convention.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/config_detector.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/endstation.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/endstation_max_iv_trial.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/spot_xy_convention.py usr/lib/python3.14/dist-packages/iotbx/detectors/util/ usr/lib/python3.14/dist-packages/iotbx/detectors/util/__init__.py usr/lib/python3.14/dist-packages/iotbx/detectors/util/filters.py usr/lib/python3.14/dist-packages/iotbx/dsn6/ usr/lib/python3.14/dist-packages/iotbx/dsn6/__init__.py usr/lib/python3.14/dist-packages/iotbx/dsn6/tst.py usr/lib/python3.14/dist-packages/iotbx/dtrek/ usr/lib/python3.14/dist-packages/iotbx/dtrek/__init__.py usr/lib/python3.14/dist-packages/iotbx/dtrek/crystal_symmetry_from_ref.py usr/lib/python3.14/dist-packages/iotbx/dtrek/dtrek_symmetry_dict.py usr/lib/python3.14/dist-packages/iotbx/dtrek/reflnlist_reader.py usr/lib/python3.14/dist-packages/iotbx/examples/ usr/lib/python3.14/dist-packages/iotbx/examples/__init__.py usr/lib/python3.14/dist-packages/iotbx/examples/direct_methods_light.py usr/lib/python3.14/dist-packages/iotbx/examples/libtbx_phil_examples.py usr/lib/python3.14/dist-packages/iotbx/examples/mtz_convert_free_to_work.py usr/lib/python3.14/dist-packages/iotbx/examples/mtz_free_flipper.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_shake.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_split_chains.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_symmetry_copies.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_to_map_simple.py usr/lib/python3.14/dist-packages/iotbx/examples/pdbx_mmcif_tutorial.py usr/lib/python3.14/dist-packages/iotbx/examples/prepare_model_for_rsr.py usr/lib/python3.14/dist-packages/iotbx/examples/recalculate_phenix_refine_r_factors.py usr/lib/python3.14/dist-packages/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py usr/lib/python3.14/dist-packages/iotbx/examples/tst_mtz_free_flipper.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/ usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/__init__.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/tst.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v2_simple.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v3_better.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py usr/lib/python3.14/dist-packages/iotbx/file_io/ usr/lib/python3.14/dist-packages/iotbx/file_io/__init__.py usr/lib/python3.14/dist-packages/iotbx/file_io/_maps.py usr/lib/python3.14/dist-packages/iotbx/file_io/detection.py usr/lib/python3.14/dist-packages/iotbx/file_io/reader.py usr/lib/python3.14/dist-packages/iotbx/file_io/text_detection.py usr/lib/python3.14/dist-packages/iotbx/fullprof/ usr/lib/python3.14/dist-packages/iotbx/fullprof/__init__.py usr/lib/python3.14/dist-packages/iotbx/fullprof/read_pcr.py usr/lib/python3.14/dist-packages/iotbx/fullprof/write_pcr.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/ usr/lib/python3.14/dist-packages/iotbx/gui_tools/__init__.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/cif_conversions.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/import_data_and_flags.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/models.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/reflections.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/tst.py usr/lib/python3.14/dist-packages/iotbx/kriber/ usr/lib/python3.14/dist-packages/iotbx/kriber/__init__.py usr/lib/python3.14/dist-packages/iotbx/kriber/strudat.py usr/lib/python3.14/dist-packages/iotbx/kriber/tst_strudat.py usr/lib/python3.14/dist-packages/iotbx/mrcfile/ usr/lib/python3.14/dist-packages/iotbx/mrcfile/__init__.py usr/lib/python3.14/dist-packages/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py usr/lib/python3.14/dist-packages/iotbx/mtz/ usr/lib/python3.14/dist-packages/iotbx/mtz/__init__.py usr/lib/python3.14/dist-packages/iotbx/mtz/crystal_symmetry_from_mtz.py usr/lib/python3.14/dist-packages/iotbx/mtz/extract_from_symmetry_lib.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_dano.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_ext.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_miller_dict.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_unmerged.py usr/lib/python3.14/dist-packages/iotbx/ncs/ usr/lib/python3.14/dist-packages/iotbx/ncs/__init__.py usr/lib/python3.14/dist-packages/iotbx/pdb/ usr/lib/python3.14/dist-packages/iotbx/pdb/__init__.py usr/lib/python3.14/dist-packages/iotbx/pdb/aa_utils.py usr/lib/python3.14/dist-packages/iotbx/pdb/amino_acid_codes.py usr/lib/python3.14/dist-packages/iotbx/pdb/atom_name_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/atom_selection.py usr/lib/python3.14/dist-packages/iotbx/pdb/cryst1_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/crystal_symmetry_from_pdb.py usr/lib/python3.14/dist-packages/iotbx/pdb/download.py usr/lib/python3.14/dist-packages/iotbx/pdb/experiment_type.py usr/lib/python3.14/dist-packages/iotbx/pdb/extract_rfactors_resolutions_sigma.py usr/lib/python3.14/dist-packages/iotbx/pdb/fetch.py usr/lib/python3.14/dist-packages/iotbx/pdb/forward_compatible_pdb_cif_conversion.py usr/lib/python3.14/dist-packages/iotbx/pdb/hierarchy.py usr/lib/python3.14/dist-packages/iotbx/pdb/hybrid_36.py usr/lib/python3.14/dist-packages/iotbx/pdb/misc_records_output.py usr/lib/python3.14/dist-packages/iotbx/pdb/mmcif.py usr/lib/python3.14/dist-packages/iotbx/pdb/modified_aa_names.py usr/lib/python3.14/dist-packages/iotbx/pdb/modified_rna_dna_names.py usr/lib/python3.14/dist-packages/iotbx/pdb/nucleic_acid_codes.py usr/lib/python3.14/dist-packages/iotbx/pdb/pdb_v3_cif_conversion.py usr/lib/python3.14/dist-packages/iotbx/pdb/pdbe.py usr/lib/python3.14/dist-packages/iotbx/pdb/rcsb.py usr/lib/python3.14/dist-packages/iotbx/pdb/records.py usr/lib/python3.14/dist-packages/iotbx/pdb/remark_290_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/remark_2_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/remark_3_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/rna_dna_detection.py usr/lib/python3.14/dist-packages/iotbx/pdb/secondary_structure.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_atom_selection.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_atom_selection_string.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_ext.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_input_pickling.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_mmcif.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_pdb.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_secondary_structure.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_secondary_structure_2.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_tls.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_utils.py usr/lib/python3.14/dist-packages/iotbx/pdb/utils.py usr/lib/python3.14/dist-packages/iotbx/pdb/web_service_api.py usr/lib/python3.14/dist-packages/iotbx/pdb/xray_structure.py usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/ usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/__init__.py usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/remediator.py usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/tst_remediator.py usr/lib/python3.14/dist-packages/iotbx/programs/ usr/lib/python3.14/dist-packages/iotbx/programs/__init__.py usr/lib/python3.14/dist-packages/iotbx/programs/box_around_molecule.py usr/lib/python3.14/dist-packages/iotbx/programs/split_data_cif.py usr/lib/python3.14/dist-packages/iotbx/programs/unique_with_biomt.py usr/lib/python3.14/dist-packages/iotbx/regression/ usr/lib/python3.14/dist-packages/iotbx/regression/__init__.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_add_conformations.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_all_chain_ids.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_atom_selections_10k.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_bioinformatics.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_box_around_molecule.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_cif_1.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_cli_parser.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_csv_utils.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_data_manager.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_data_plots.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_examples.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_extract_xtal_data.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_fetch.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_file_io.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_file_reader.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_generate_n_char_string.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_group_rounding.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_altlocs.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_id_str.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_pdb_v3.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_lattice_symmetry.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_manager.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_manager_2.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_manager_wrapping.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_2.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_3.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_4.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_local_resolution_10.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_tools.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_merging_statistics.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_miller_sort_asu.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_input.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_multimodel.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_segids.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mrc_io.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mtz_as_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_patterson.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_as_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_as_fasta.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_cif_cells.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_link_records.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_phases.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_phil.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_poscar.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_file_editor.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_file_reader.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_file_utils.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_statistics.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reindex.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_restraints_merge.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_show_systematic_absences.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_simple_map_coefficients.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_simple_parser.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_sort_atoms.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_split_data_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_split_models.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_symmetry.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_text_detection.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_wildcard.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_xray_scale.py usr/lib/python3.14/dist-packages/iotbx/regression/utils.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/ usr/lib/python3.14/dist-packages/iotbx/regression/ncs/__init__.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_input.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_reordered_chains.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py usr/lib/python3.14/dist-packages/iotbx/scalepack/ usr/lib/python3.14/dist-packages/iotbx/scalepack/__init__.py usr/lib/python3.14/dist-packages/iotbx/scalepack/crystal_symmetry_from_hkl.py usr/lib/python3.14/dist-packages/iotbx/scalepack/merge.py usr/lib/python3.14/dist-packages/iotbx/scalepack/no_merge_original_index.py usr/lib/python3.14/dist-packages/iotbx/scalepack/space_group_dictionary.py usr/lib/python3.14/dist-packages/iotbx/scalepack/tst_merge.py usr/lib/python3.14/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py usr/lib/python3.14/dist-packages/iotbx/shelx/ usr/lib/python3.14/dist-packages/iotbx/shelx/__init__.py usr/lib/python3.14/dist-packages/iotbx/shelx/crystal_symmetry_from_ins.py usr/lib/python3.14/dist-packages/iotbx/shelx/errors.py usr/lib/python3.14/dist-packages/iotbx/shelx/fcf.py usr/lib/python3.14/dist-packages/iotbx/shelx/fvar_encoding.py usr/lib/python3.14/dist-packages/iotbx/shelx/hklf.py usr/lib/python3.14/dist-packages/iotbx/shelx/lexer.py usr/lib/python3.14/dist-packages/iotbx/shelx/parsers.py usr/lib/python3.14/dist-packages/iotbx/shelx/tokens.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_fvar_encoding.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_hklf.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_lex_parse_build.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_writer.py usr/lib/python3.14/dist-packages/iotbx/shelx/write_ins.py usr/lib/python3.14/dist-packages/iotbx/shelx/writer.py usr/lib/python3.14/dist-packages/iotbx/solve/ usr/lib/python3.14/dist-packages/iotbx/solve/__init__.py usr/lib/python3.14/dist-packages/iotbx/solve/crystal_symmetry_from_inp.py usr/lib/python3.14/dist-packages/iotbx/solve/fpfm_reader.py usr/lib/python3.14/dist-packages/iotbx/xds/ usr/lib/python3.14/dist-packages/iotbx/xds/__init__.py usr/lib/python3.14/dist-packages/iotbx/xds/blank_cbf.py usr/lib/python3.14/dist-packages/iotbx/xds/correction.py usr/lib/python3.14/dist-packages/iotbx/xds/crystal_symmetry_from_hkl.py usr/lib/python3.14/dist-packages/iotbx/xds/gain_cbf.py usr/lib/python3.14/dist-packages/iotbx/xds/geometry.py usr/lib/python3.14/dist-packages/iotbx/xds/integrate_hkl.py usr/lib/python3.14/dist-packages/iotbx/xds/read_ascii.py usr/lib/python3.14/dist-packages/iotbx/xds/spot_xds.py usr/lib/python3.14/dist-packages/iotbx/xds/xds_cbf.py usr/lib/python3.14/dist-packages/iotbx/xds/xds_inp.py usr/lib/python3.14/dist-packages/iotbx/xds/xparm.py usr/lib/python3.14/dist-packages/iotbx/xplor/ usr/lib/python3.14/dist-packages/iotbx/xplor/__init__.py usr/lib/python3.14/dist-packages/iotbx/xplor/crystal_symmetry_from_map.py usr/lib/python3.14/dist-packages/iotbx/xplor/ext.py usr/lib/python3.14/dist-packages/iotbx/xplor/map.py usr/lib/python3.14/dist-packages/iotbx/xplor/tst_xplormap.py usr/lib/python3.14/dist-packages/libtbx/ usr/lib/python3.14/dist-packages/libtbx/__init__.py usr/lib/python3.14/dist-packages/libtbx/assert_utils.py usr/lib/python3.14/dist-packages/libtbx/binary_search.py usr/lib/python3.14/dist-packages/libtbx/callbacks.py usr/lib/python3.14/dist-packages/libtbx/citations.py usr/lib/python3.14/dist-packages/libtbx/clear_paths.py usr/lib/python3.14/dist-packages/libtbx/cli.py usr/lib/python3.14/dist-packages/libtbx/cluster.py usr/lib/python3.14/dist-packages/libtbx/clusterTests.py usr/lib/python3.14/dist-packages/libtbx/code_analysis.py usr/lib/python3.14/dist-packages/libtbx/complex_math.py usr/lib/python3.14/dist-packages/libtbx/configure.py usr/lib/python3.14/dist-packages/libtbx/console_utils.py usr/lib/python3.14/dist-packages/libtbx/containers.py usr/lib/python3.14/dist-packages/libtbx/cpp_function_name.py usr/lib/python3.14/dist-packages/libtbx/crossmingw.py usr/lib/python3.14/dist-packages/libtbx/dlite.py usr/lib/python3.14/dist-packages/libtbx/easy_mp.py usr/lib/python3.14/dist-packages/libtbx/easy_pickle.py usr/lib/python3.14/dist-packages/libtbx/easy_profile.py usr/lib/python3.14/dist-packages/libtbx/easy_run.py usr/lib/python3.14/dist-packages/libtbx/env_config.py usr/lib/python3.14/dist-packages/libtbx/file_clutter.py usr/lib/python3.14/dist-packages/libtbx/find_reference_cycles.py usr/lib/python3.14/dist-packages/libtbx/forward_compatibility.py usr/lib/python3.14/dist-packages/libtbx/introspection.py usr/lib/python3.14/dist-packages/libtbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/libtbx/load_env.py usr/lib/python3.14/dist-packages/libtbx/log.py usr/lib/python3.14/dist-packages/libtbx/math_utils.py usr/lib/python3.14/dist-packages/libtbx/metric_prefixes.py usr/lib/python3.14/dist-packages/libtbx/mpi4py.py usr/lib/python3.14/dist-packages/libtbx/object_oriented_patterns.py usr/lib/python3.14/dist-packages/libtbx/objgraph.py usr/lib/python3.14/dist-packages/libtbx/option_parser.py usr/lib/python3.14/dist-packages/libtbx/path.py usr/lib/python3.14/dist-packages/libtbx/pkg_utils.py usr/lib/python3.14/dist-packages/libtbx/program_template.py usr/lib/python3.14/dist-packages/libtbx/progress.py usr/lib/python3.14/dist-packages/libtbx/pyframe.py usr/lib/python3.14/dist-packages/libtbx/pyplot.py usr/lib/python3.14/dist-packages/libtbx/python_code_parsing.py usr/lib/python3.14/dist-packages/libtbx/resource_monitor.py usr/lib/python3.14/dist-packages/libtbx/run_tests.py usr/lib/python3.14/dist-packages/libtbx/runtime_utils.py usr/lib/python3.14/dist-packages/libtbx/simplexml.py usr/lib/python3.14/dist-packages/libtbx/smart_open.py usr/lib/python3.14/dist-packages/libtbx/start_print_trace.py usr/lib/python3.14/dist-packages/libtbx/str_utils.py usr/lib/python3.14/dist-packages/libtbx/subprocess_with_fixes.py usr/lib/python3.14/dist-packages/libtbx/table_utils.py usr/lib/python3.14/dist-packages/libtbx/thread_utils.py usr/lib/python3.14/dist-packages/libtbx/topological_sort.py usr/lib/python3.14/dist-packages/libtbx/try_hello_world_c.py usr/lib/python3.14/dist-packages/libtbx/tst_add_docstrings_with_ai.py usr/lib/python3.14/dist-packages/libtbx/tst_binary_search.py usr/lib/python3.14/dist-packages/libtbx/tst_citation_encoding.py usr/lib/python3.14/dist-packages/libtbx/tst_citations.py usr/lib/python3.14/dist-packages/libtbx/tst_conda_dispatcher.py usr/lib/python3.14/dist-packages/libtbx/tst_containers.py usr/lib/python3.14/dist-packages/libtbx/tst_dlite.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_mp.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_mp_multicore.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_mp_state.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_pickle.py usr/lib/python3.14/dist-packages/libtbx/tst_find_unused_imports.py usr/lib/python3.14/dist-packages/libtbx/tst_fully_buffered_timeout.py usr/lib/python3.14/dist-packages/libtbx/tst_guided_coding.py usr/lib/python3.14/dist-packages/libtbx/tst_mahalanobis.py usr/lib/python3.14/dist-packages/libtbx/tst_math_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_object_oriented_patterns.py usr/lib/python3.14/dist-packages/libtbx/tst_path.py usr/lib/python3.14/dist-packages/libtbx/tst_program_template.py usr/lib/python3.14/dist-packages/libtbx/tst_python_code_parsing.py usr/lib/python3.14/dist-packages/libtbx/tst_representation.py usr/lib/python3.14/dist-packages/libtbx/tst_run_tests_parallel_retry.py usr/lib/python3.14/dist-packages/libtbx/tst_run_tests_parallel_unique_dirs.py usr/lib/python3.14/dist-packages/libtbx/tst_runtime_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_scheduling.py usr/lib/python3.14/dist-packages/libtbx/tst_str_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_t96_roster.py usr/lib/python3.14/dist-packages/libtbx/tst_thread_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_topological_sort.py usr/lib/python3.14/dist-packages/libtbx/tst_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_version.py usr/lib/python3.14/dist-packages/libtbx/tst_word_index_generator.py usr/lib/python3.14/dist-packages/libtbx/tst_xmlrpc_utils.py usr/lib/python3.14/dist-packages/libtbx/utils.py usr/lib/python3.14/dist-packages/libtbx/version.py usr/lib/python3.14/dist-packages/libtbx/wingide.py usr/lib/python3.14/dist-packages/libtbx/word_index_generator.py usr/lib/python3.14/dist-packages/libtbx/xmlrpc_server_example.py usr/lib/python3.14/dist-packages/libtbx/xmlrpc_utils.py usr/lib/python3.14/dist-packages/libtbx/auto_build/ usr/lib/python3.14/dist-packages/libtbx/auto_build/__init__.py usr/lib/python3.14/dist-packages/libtbx/auto_build/bootstrap.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_cctbx_bundle_for_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_mac_app.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_mac_pkg.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_windows_exe.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_windows_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/install_base_packages.py usr/lib/python3.14/dist-packages/libtbx/auto_build/install_conda.py usr/lib/python3.14/dist-packages/libtbx/auto_build/install_distribution.py usr/lib/python3.14/dist-packages/libtbx/auto_build/installer_utils.py usr/lib/python3.14/dist-packages/libtbx/auto_build/make_bundle.py usr/lib/python3.14/dist-packages/libtbx/auto_build/package_defs.py usr/lib/python3.14/dist-packages/libtbx/auto_build/plus_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/regenerate_module_files.py usr/lib/python3.14/dist-packages/libtbx/auto_build/rpath.py usr/lib/python3.14/dist-packages/libtbx/auto_build/setup_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/write_gui_dispatcher_include.py usr/lib/python3.14/dist-packages/libtbx/bundle/ usr/lib/python3.14/dist-packages/libtbx/bundle/__init__.py usr/lib/python3.14/dist-packages/libtbx/bundle/copy_all.py usr/lib/python3.14/dist-packages/libtbx/bundle/copy_build_libtbx.py usr/lib/python3.14/dist-packages/libtbx/bundle/copy_runtime_sources.py usr/lib/python3.14/dist-packages/libtbx/bundle/install_bat.py usr/lib/python3.14/dist-packages/libtbx/bundle/install_csh.py usr/lib/python3.14/dist-packages/libtbx/bundle/utils.py usr/lib/python3.14/dist-packages/libtbx/command_line/ usr/lib/python3.14/dist-packages/libtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/libtbx/command_line/add_docstrings_with_ai.py usr/lib/python3.14/dist-packages/libtbx/command_line/analyse_code_comments.py usr/lib/python3.14/dist-packages/libtbx/command_line/any2unix.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_line_count.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_not_show_diff.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_stdin.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_stdin_contains_strings.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_stdin_ends_with.py usr/lib/python3.14/dist-packages/libtbx/command_line/bootstrap.py usr/lib/python3.14/dist-packages/libtbx/command_line/bundle_as_exe.py usr/lib/python3.14/dist-packages/libtbx/command_line/cctbx_chunk.py usr/lib/python3.14/dist-packages/libtbx/command_line/check_libcpp.py usr/lib/python3.14/dist-packages/libtbx/command_line/clean_clutter.py usr/lib/python3.14/dist-packages/libtbx/command_line/clear_paths.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_cctbx_bundle_for_installer.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_install_script_bat.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_installer.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_mac_app.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_selfx.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_unzipsfx.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_windows_exe.py usr/lib/python3.14/dist-packages/libtbx/command_line/dtrace.py usr/lib/python3.14/dist-packages/libtbx/command_line/easy_qsub.py usr/lib/python3.14/dist-packages/libtbx/command_line/env_run.py usr/lib/python3.14/dist-packages/libtbx/command_line/epydoc_run.py usr/lib/python3.14/dist-packages/libtbx/command_line/extract_code_from_txt.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_clutter.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_files.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_in_repositories.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_old_style_classes.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_pdb_mmcif_problems.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_reserved_names.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_under_build.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_untested.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_unused_imports.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_unused_imports_crude.py usr/lib/python3.14/dist-packages/libtbx/command_line/git_avoid_merges.py usr/lib/python3.14/dist-packages/libtbx/command_line/help.py usr/lib/python3.14/dist-packages/libtbx/command_line/import_all_ext.py usr/lib/python3.14/dist-packages/libtbx/command_line/import_all_python.py usr/lib/python3.14/dist-packages/libtbx/command_line/install.py usr/lib/python3.14/dist-packages/libtbx/command_line/install_conda.py usr/lib/python3.14/dist-packages/libtbx/command_line/ipython_shell_start.py usr/lib/python3.14/dist-packages/libtbx/command_line/line_count.py usr/lib/python3.14/dist-packages/libtbx/command_line/list_files.py usr/lib/python3.14/dist-packages/libtbx/command_line/list_modules.py usr/lib/python3.14/dist-packages/libtbx/command_line/list_source_files_sorted_by_size.py usr/lib/python3.14/dist-packages/libtbx/command_line/make_dist.py usr/lib/python3.14/dist-packages/libtbx/command_line/make_sphinx_html.py usr/lib/python3.14/dist-packages/libtbx/command_line/nequal.py usr/lib/python3.14/dist-packages/libtbx/command_line/parallel_simple.py usr/lib/python3.14/dist-packages/libtbx/command_line/path_utility.py usr/lib/python3.14/dist-packages/libtbx/command_line/phil.py usr/lib/python3.14/dist-packages/libtbx/command_line/prime_factors_of.py usr/lib/python3.14/dist-packages/libtbx/command_line/printenv.py usr/lib/python3.14/dist-packages/libtbx/command_line/py_compile_all.py usr/lib/python3.14/dist-packages/libtbx/command_line/raise_exception_for_testing.py usr/lib/python3.14/dist-packages/libtbx/command_line/reindent.py usr/lib/python3.14/dist-packages/libtbx/command_line/remote_processing.py usr/lib/python3.14/dist-packages/libtbx/command_line/remove_tree.py usr/lib/python3.14/dist-packages/libtbx/command_line/remove_unused_imports.py usr/lib/python3.14/dist-packages/libtbx/command_line/resource_monitor_plot.py usr/lib/python3.14/dist-packages/libtbx/command_line/run_pickled_function.py usr/lib/python3.14/dist-packages/libtbx/command_line/run_tests_parallel.py usr/lib/python3.14/dist-packages/libtbx/command_line/scons.py usr/lib/python3.14/dist-packages/libtbx/command_line/seconds_since_the_epoch.py usr/lib/python3.14/dist-packages/libtbx/command_line/sge_available_slots.py usr/lib/python3.14/dist-packages/libtbx/command_line/sge_qstat_counts.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_all_on_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_bin_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_build_options.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_build_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_but_no_repr.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_commands.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_date_and_time.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_dist_paths.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_env.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_environ_usage.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_full_command_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_host_and_user.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_include_paths.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_lib_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_module_dependencies.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_number_of_processors.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_numeric_version.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_numpy_version.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_python_dependencies.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_python_sys_executable.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_pythonpath.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_repository_paths.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_tests.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_variable_names.py usr/lib/python3.14/dist-packages/libtbx/command_line/sphinx_build.py usr/lib/python3.14/dist-packages/libtbx/command_line/start_binary_bundle.py usr/lib/python3.14/dist-packages/libtbx/command_line/start_process.py usr/lib/python3.14/dist-packages/libtbx/command_line/wait_for_file.py usr/lib/python3.14/dist-packages/libtbx/development/ usr/lib/python3.14/dist-packages/libtbx/development/__init__.py usr/lib/python3.14/dist-packages/libtbx/development/except_Exception.py usr/lib/python3.14/dist-packages/libtbx/development/timers.py usr/lib/python3.14/dist-packages/libtbx/development/xcode_build_phase.py usr/lib/python3.14/dist-packages/libtbx/jobs/ usr/lib/python3.14/dist-packages/libtbx/jobs/__init__.py usr/lib/python3.14/dist-packages/libtbx/jobs/fake_slurm.py usr/lib/python3.14/dist-packages/libtbx/jobs/manager.py usr/lib/python3.14/dist-packages/libtbx/jobs/tst_batch.py usr/lib/python3.14/dist-packages/libtbx/jobs/tst_local.py usr/lib/python3.14/dist-packages/libtbx/jobs/tst_manager.py usr/lib/python3.14/dist-packages/libtbx/jobs/tst_slurm.py usr/lib/python3.14/dist-packages/libtbx/jobs/backends/ usr/lib/python3.14/dist-packages/libtbx/jobs/backends/__init__.py usr/lib/python3.14/dist-packages/libtbx/jobs/backends/base.py usr/lib/python3.14/dist-packages/libtbx/jobs/backends/batch.py usr/lib/python3.14/dist-packages/libtbx/jobs/backends/local.py usr/lib/python3.14/dist-packages/libtbx/jobs/backends/slurm.py usr/lib/python3.14/dist-packages/libtbx/langchain/ usr/lib/python3.14/dist-packages/libtbx/langchain/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/phenix_knowledge.py usr/lib/python3.14/dist-packages/libtbx/langchain/run_build_db.py usr/lib/python3.14/dist-packages/libtbx/langchain/run_inspect_db.py usr/lib/python3.14/dist-packages/libtbx/langchain/run_query_docs.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/ usr/lib/python3.14/dist-packages/libtbx/langchain/agent/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/advice_preprocessor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/api_client.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/best_files_tracker.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/command_builder.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/command_postprocessor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/config_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/contract.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/directive_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/directive_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/display_data_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/docs_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/dry_run_manager.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/error_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/error_classifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/event_formatter.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/event_log.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/failure_diagnoser.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/file_metadata.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/file_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/format_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/gate_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/generate_logic_doc.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/generate_safety_docs.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/graph.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/graph_nodes.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/graph_state.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/hypothesis_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/intent_classifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/kb_tags.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/log_section_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/memory.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/metric_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/metrics_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/mtz_inspector.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/nl_to_phil.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/pattern_manager.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/perceive_checks.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/phenix_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/phil_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/placement_checker.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/plan_generator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/planner.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/program_registry.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/program_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/r_factors.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/rate_limit_handler.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/raw_advice_scanner.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/rules_selector.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/sanity_checker.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/session.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/session_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/strategy_memory.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/structure_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/template_builder.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/thinking_agent.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/transport.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/tst_agent_enhancements.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/validation_history.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/validation_inspector.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/workflow_engine.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/workflow_state.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/yaml_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/ usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/agent_session_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/analysis_request.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/log_info.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/orientation_strip.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/program_identity.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/report_verifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/state_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/summarizer.py usr/lib/python3.14/dist-packages/libtbx/langchain/commands/ usr/lib/python3.14/dist-packages/libtbx/langchain/commands/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/commands/base.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/ usr/lib/python3.14/dist-packages/libtbx/langchain/core/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/_build_info.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/_version.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/llm.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/types.py usr/lib/python3.14/dist-packages/libtbx/langchain/examples/ usr/lib/python3.14/dist-packages/libtbx/langchain/examples/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/ usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/api_schema.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/explanation_prompts.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/html_report_template.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/kb_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/metric_patterns.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/phenix_programs.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/plan_schema.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/plan_template_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/program_registration.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/prompts.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/prompts_hybrid.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/summary_display.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/thinking_prompts.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/yaml_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/log_extraction/ usr/lib/python3.14/dist-packages/libtbx/langchain/log_extraction/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/log_extraction/corpus_paths.py usr/lib/python3.14/dist-packages/libtbx/langchain/log_extraction/log_structure_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/log_extraction/run_controls.py usr/lib/python3.14/dist-packages/libtbx/langchain/log_extraction/run_measurements.py usr/lib/python3.14/dist-packages/libtbx/langchain/log_extraction/validate.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/ usr/lib/python3.14/dist-packages/libtbx/langchain/rag/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/_chroma_resilience.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/document_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/retriever.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/vector_store.py usr/lib/python3.14/dist-packages/libtbx/langchain/strategies/ usr/lib/python3.14/dist-packages/libtbx/langchain/strategies/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/strategies/base.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/ usr/lib/python3.14/dist-packages/libtbx/langchain/tests/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/analyze_tutorial_runs.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/audit_phase_rename.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/canary_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/run_all_tests.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/test_api_keys.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_abort_message_all_stops.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_action_item_1.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_advice_preprocessing.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_after_program_fill_from_raw.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_after_program_prompt.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_agent_build_info.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_analysis_request.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_api_schema.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_audit_fixes.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_autobuild_hl_recovery.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_autobuild_sequence_waiver.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_autosol_bugs.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_backward_compat.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_best_files_tracker.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_canary.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_cc_key_extraction.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_classify_mtz_type_001.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_command_builder.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_contract_compliance.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_copies_tracking.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_cryoem_stop_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_data_input_filter.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_decision_flow.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_default_models.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_density_modify_experiment_type.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_dependencies.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_diagnosed_failure_stop.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_diagnostic_messages.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_extractor_grounding.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_layer_diagnostics.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_validator_typo_hints.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directives_integration.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_display_data_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_dock_and_stop.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_docs_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_dry_run.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_error_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_error_classifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_event_formatter_file_categories.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_event_system.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_explanation_prompts.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_extended_stop_phrasings.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_extract_raw_advice.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_extraction_failure_visibility.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_fabricated_stop_condition.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_file_categorization.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_file_categorizer.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_file_encoding.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_file_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_fix_verification.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_force_no_ai_server.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_gate_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_general_resolver.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_grounding_stop_after_requested.py 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usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_ligandfit_patterns.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_llm_unavailable_notice.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_log_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_log_structure_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_metric_patterns.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_metrics_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_mode_isolation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_mtz_crosscheck.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_mtz_phases_session_blocking.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_n_bugs.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_new_programs.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_obs_labels_auto_fill.py 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usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_condition_false_positive.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_condition_fix.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_reason_codes.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_reason_prompt.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_strategy_memory.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_structure_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_summary_display.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_summary_file.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_supported_providers_single_source.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_template.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_thinking_agent.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_thinking_defense.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_transport.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_transport_surfaces.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_user_advice_filter.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_v112_13_fixes.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_v120_providers.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_validate_file_overrides.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_validate_step_after_program_guard.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_validation_history.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_workflow_complete_stop.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_workflow_state.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_yaml_config.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_yaml_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/integration/ usr/lib/python3.14/dist-packages/libtbx/langchain/tests/integration/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/ usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/canary_check.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/framework.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/run_llm_tests.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_c1_raw_authority.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_directive_extraction.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_framework_self.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_planning.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/ usr/lib/python3.14/dist-packages/libtbx/langchain/utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/query.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/run_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/text_processing.py usr/lib/python3.14/dist-packages/libtbx/phil/ usr/lib/python3.14/dist-packages/libtbx/phil/__init__.py usr/lib/python3.14/dist-packages/libtbx/phil/command_line.py usr/lib/python3.14/dist-packages/libtbx/phil/experimental.py usr/lib/python3.14/dist-packages/libtbx/phil/gui_objects.py usr/lib/python3.14/dist-packages/libtbx/phil/interface.py usr/lib/python3.14/dist-packages/libtbx/phil/parser.py usr/lib/python3.14/dist-packages/libtbx/phil/tokenizer.py usr/lib/python3.14/dist-packages/libtbx/phil/tst.py usr/lib/python3.14/dist-packages/libtbx/phil/tst_experimental.py usr/lib/python3.14/dist-packages/libtbx/phil/tst_interface.py usr/lib/python3.14/dist-packages/libtbx/phil/tst_tokenizer.py usr/lib/python3.14/dist-packages/libtbx/program_utils/ usr/lib/python3.14/dist-packages/libtbx/program_utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/program_utils/result.py usr/lib/python3.14/dist-packages/libtbx/program_utils/statistics_info.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/ usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/communication.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/generic.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/looping.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/lsf.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/pbs_utils.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/remote.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/scheduling.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/scheduling_helpers.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/sge_utils.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/tst.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/ usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/__init__.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/errors.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/polling.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/status.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/submission.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/transfer.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/util.py usr/lib/python3.14/dist-packages/libtbx/scheduling/ usr/lib/python3.14/dist-packages/libtbx/scheduling/__init__.py usr/lib/python3.14/dist-packages/libtbx/scheduling/cluster_handler.py usr/lib/python3.14/dist-packages/libtbx/scheduling/file_queue.py usr/lib/python3.14/dist-packages/libtbx/scheduling/job_scheduler.py usr/lib/python3.14/dist-packages/libtbx/scheduling/mainthread.py usr/lib/python3.14/dist-packages/libtbx/scheduling/mp_handler.py usr/lib/python3.14/dist-packages/libtbx/scheduling/parallel_for.py usr/lib/python3.14/dist-packages/libtbx/scheduling/philgen.py usr/lib/python3.14/dist-packages/libtbx/scheduling/process_pool.py usr/lib/python3.14/dist-packages/libtbx/scheduling/result.py usr/lib/python3.14/dist-packages/libtbx/scheduling/shared_resource.py usr/lib/python3.14/dist-packages/libtbx/scheduling/socket_queue.py usr/lib/python3.14/dist-packages/libtbx/scheduling/stacktrace.py usr/lib/python3.14/dist-packages/libtbx/scheduling/thread_handler.py usr/lib/python3.14/dist-packages/libtbx/server/ usr/lib/python3.14/dist-packages/libtbx/server/FileClient.py usr/lib/python3.14/dist-packages/libtbx/server/FileServer.py usr/lib/python3.14/dist-packages/libtbx/server/FileSocket.py usr/lib/python3.14/dist-packages/libtbx/server/SocketServer.py usr/lib/python3.14/dist-packages/libtbx/server/StartServer.py usr/lib/python3.14/dist-packages/libtbx/server/__init__.py usr/lib/python3.14/dist-packages/libtbx/sphinx/ usr/lib/python3.14/dist-packages/libtbx/sphinx/__init__.py usr/lib/python3.14/dist-packages/libtbx/sphinx/phil.py usr/lib/python3.14/dist-packages/libtbx/sphinx/pubmed.py usr/lib/python3.14/dist-packages/libtbx/sphinx/python_string.py usr/lib/python3.14/dist-packages/libtbx/test_utils/ usr/lib/python3.14/dist-packages/libtbx/test_utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/test_utils/parallel.py usr/lib/python3.14/dist-packages/libtbx/test_utils/t96_roster.py usr/lib/python3.14/dist-packages/mmtbx/ usr/lib/python3.14/dist-packages/mmtbx/__init__.py usr/lib/python3.14/dist-packages/mmtbx/arrays.py usr/lib/python3.14/dist-packages/mmtbx/clashes.py usr/lib/python3.14/dist-packages/mmtbx/domains_from_pae.py usr/lib/python3.14/dist-packages/mmtbx/f_model_info.py usr/lib/python3.14/dist-packages/mmtbx/find_peaks.py usr/lib/python3.14/dist-packages/mmtbx/grow_density.py usr/lib/python3.14/dist-packages/mmtbx/invariant_domain.py usr/lib/python3.14/dist-packages/mmtbx/lattice.py usr/lib/python3.14/dist-packages/mmtbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/mmtbx/map_tools.py usr/lib/python3.14/dist-packages/mmtbx/model_vs_data.py usr/lib/python3.14/dist-packages/mmtbx/msa.py usr/lib/python3.14/dist-packages/mmtbx/pdb_distances.py usr/lib/python3.14/dist-packages/mmtbx/pdb_symmetry.py usr/lib/python3.14/dist-packages/mmtbx/pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/proq2.py usr/lib/python3.14/dist-packages/mmtbx/real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/resolve_resources.py usr/lib/python3.14/dist-packages/mmtbx/restraints.py usr/lib/python3.14/dist-packages/mmtbx/run_tests.py usr/lib/python3.14/dist-packages/mmtbx/superpose.py usr/lib/python3.14/dist-packages/mmtbx/xmanip.py usr/lib/python3.14/dist-packages/mmtbx/xmanip_tasks.py usr/lib/python3.14/dist-packages/mmtbx/alignment/ usr/lib/python3.14/dist-packages/mmtbx/alignment/__init__.py usr/lib/python3.14/dist-packages/mmtbx/atomic_environment_vectors/ usr/lib/python3.14/dist-packages/mmtbx/atomic_environment_vectors/__init__.py usr/lib/python3.14/dist-packages/mmtbx/atomic_environment_vectors/tst.py usr/lib/python3.14/dist-packages/mmtbx/building/ usr/lib/python3.14/dist-packages/mmtbx/building/__init__.py usr/lib/python3.14/dist-packages/mmtbx/building/cablam_idealization.py usr/lib/python3.14/dist-packages/mmtbx/building/extend_sidechains.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_idealization.py usr/lib/python3.14/dist-packages/mmtbx/building/merge_models.py usr/lib/python3.14/dist-packages/mmtbx/building/minimize_chain.py usr/lib/python3.14/dist-packages/mmtbx/building/tst_extend_sidechains.py usr/lib/python3.14/dist-packages/mmtbx/building/tst_extend_sidechains_2.py usr/lib/python3.14/dist-packages/mmtbx/building/ligands/ usr/lib/python3.14/dist-packages/mmtbx/building/ligands/__init__.py usr/lib/python3.14/dist-packages/mmtbx/building/ligands/lifi.py usr/lib/python3.14/dist-packages/mmtbx/building/ligands/tst_00.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/ usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/__init__.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/berkeley_ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/ccd.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/starting_conformations.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/utils.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/ usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/__init__.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/example.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/example2.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/f_model_all_scales.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/kbu_refinery.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/mosaic.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/scaler.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_aniso_scaler.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_flat_nonuniform.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_mosaic.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_scaler.py usr/lib/python3.14/dist-packages/mmtbx/chemical_components/ usr/lib/python3.14/dist-packages/mmtbx/chemical_components/__init__.py usr/lib/python3.14/dist-packages/mmtbx/chemical_components/cif_parser.py usr/lib/python3.14/dist-packages/mmtbx/chemical_components/tst.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ usr/lib/python3.14/dist-packages/mmtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/mmtbx/command_line/altloc_remediate.py usr/lib/python3.14/dist-packages/mmtbx/command_line/angle.py usr/lib/python3.14/dist-packages/mmtbx/command_line/apply_ncs_to_ligand.py usr/lib/python3.14/dist-packages/mmtbx/command_line/arginine_geometry.py usr/lib/python3.14/dist-packages/mmtbx/command_line/atom_valence_simple.py usr/lib/python3.14/dist-packages/mmtbx/command_line/barbed_wire_analysis.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cablam.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cablam_idealization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cc_star.py usr/lib/python3.14/dist-packages/mmtbx/command_line/chiral_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cif_as_mtz.py usr/lib/python3.14/dist-packages/mmtbx/command_line/clashscore.py usr/lib/python3.14/dist-packages/mmtbx/command_line/clashscore2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/comparama.py usr/lib/python3.14/dist-packages/mmtbx/command_line/debug_riding.py usr/lib/python3.14/dist-packages/mmtbx/command_line/density_modification.py usr/lib/python3.14/dist-packages/mmtbx/command_line/development_aev.py usr/lib/python3.14/dist-packages/mmtbx/command_line/development_fem.py usr/lib/python3.14/dist-packages/mmtbx/command_line/distance_difference.py usr/lib/python3.14/dist-packages/mmtbx/command_line/dynamics.py usr/lib/python3.14/dist-packages/mmtbx/command_line/electrons.py usr/lib/python3.14/dist-packages/mmtbx/command_line/emringer.py usr/lib/python3.14/dist-packages/mmtbx/command_line/emringer_score.py usr/lib/python3.14/dist-packages/mmtbx/command_line/estimate_bijvoet_ratio.py usr/lib/python3.14/dist-packages/mmtbx/command_line/f000.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fab_elbow_angle.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fake_f_obs.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fetch_pdb.py usr/lib/python3.14/dist-packages/mmtbx/command_line/find_peaks_holes.py usr/lib/python3.14/dist-packages/mmtbx/command_line/find_residue_in_pdb.py usr/lib/python3.14/dist-packages/mmtbx/command_line/find_tls_groups.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fmodel.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fobs_minus_fobs_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/geometry_minimization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/grow_density.py usr/lib/python3.14/dist-packages/mmtbx/command_line/hbond.py usr/lib/python3.14/dist-packages/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py usr/lib/python3.14/dist-packages/mmtbx/command_line/holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/hydrogenate.py usr/lib/python3.14/dist-packages/mmtbx/command_line/kinemage.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ligand_restraints_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_box.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_comparison.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_to_model_histogram.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_to_structure_factors.py usr/lib/python3.14/dist-packages/mmtbx/command_line/maps.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mask.py usr/lib/python3.14/dist-packages/mmtbx/command_line/massage_data.py usr/lib/python3.14/dist-packages/mmtbx/command_line/matthews.py usr/lib/python3.14/dist-packages/mmtbx/command_line/maximum_entropy_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_idealization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_model_distances.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_vs_data.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_vs_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_vs_sequence.py usr/lib/python3.14/dist-packages/mmtbx/command_line/models_as_chains.py usr/lib/python3.14/dist-packages/mmtbx/command_line/molprobity.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mon_lib_cif_triage.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mp_geo.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mtz2map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/next_gen_atom_typing.py usr/lib/python3.14/dist-packages/mmtbx/command_line/next_gen_residue_typing.py usr/lib/python3.14/dist-packages/mmtbx/command_line/nonbonded_overlaps.py usr/lib/python3.14/dist-packages/mmtbx/command_line/omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/command_line/pdb_atom_selection.py usr/lib/python3.14/dist-packages/mmtbx/command_line/pdb_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/command_line/perigee.py usr/lib/python3.14/dist-packages/mmtbx/command_line/plan_sad_experiment.py usr/lib/python3.14/dist-packages/mmtbx/command_line/polder.py usr/lib/python3.14/dist-packages/mmtbx/command_line/prepare_pdb_deposition.py usr/lib/python3.14/dist-packages/mmtbx/command_line/probe2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/probescore_ligand.py usr/lib/python3.14/dist-packages/mmtbx/command_line/process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/command_line/prune_model.py usr/lib/python3.14/dist-packages/mmtbx/command_line/quantum_interface.py usr/lib/python3.14/dist-packages/mmtbx/command_line/r_factor_statistics.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rama_z.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rank_scale_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/real_space_diff_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rebuild_rotarama_cache.py usr/lib/python3.14/dist-packages/mmtbx/command_line/reciprocal_space_arrays.py usr/lib/python3.14/dist-packages/mmtbx/command_line/reduce2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/reduce_cryoem_resolution.py usr/lib/python3.14/dist-packages/mmtbx/command_line/refine_anomalous_substructure.py usr/lib/python3.14/dist-packages/mmtbx/command_line/remove_outliers.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ribbons.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rigid_bond_test.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ringer.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate_puckers.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate_suites.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/command_line/search_pdb_symmetry.py usr/lib/python3.14/dist-packages/mmtbx/command_line/secondary_structure_restraints.py usr/lib/python3.14/dist-packages/mmtbx/command_line/secondary_structure_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/select_best_starting_model.py usr/lib/python3.14/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py usr/lib/python3.14/dist-packages/mmtbx/command_line/sisa.py usr/lib/python3.14/dist-packages/mmtbx/command_line/sort_hetatms.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ss_idealization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/suitename.py usr/lib/python3.14/dist-packages/mmtbx/command_line/suitename_old.py usr/lib/python3.14/dist-packages/mmtbx/command_line/super.py usr/lib/python3.14/dist-packages/mmtbx/command_line/superpose.py usr/lib/python3.14/dist-packages/mmtbx/command_line/taam_minus_iam.py usr/lib/python3.14/dist-packages/mmtbx/command_line/table_one.py usr/lib/python3.14/dist-packages/mmtbx/command_line/tls.py usr/lib/python3.14/dist-packages/mmtbx/command_line/tls_analysis.py usr/lib/python3.14/dist-packages/mmtbx/command_line/tls_as_xyz.py usr/lib/python3.14/dist-packages/mmtbx/command_line/undowser.py usr/lib/python3.14/dist-packages/mmtbx/command_line/undowser2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/validate_H_cl_app.py usr/lib/python3.14/dist-packages/mmtbx/command_line/validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/command_line/validation_summary.py usr/lib/python3.14/dist-packages/mmtbx/command_line/verify_mon_lib_data.py usr/lib/python3.14/dist-packages/mmtbx/command_line/water_b_factors.py usr/lib/python3.14/dist-packages/mmtbx/command_line/where_is_that_cif_file.py usr/lib/python3.14/dist-packages/mmtbx/command_line/xmanip.py usr/lib/python3.14/dist-packages/mmtbx/command_line/xtrapol8.py usr/lib/python3.14/dist-packages/mmtbx/command_line/xtriage.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/ usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/LinkedResidues.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/__init__.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/altloc_weighting.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/bond_angle_registry.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_setup.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_svl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_utils.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/check_cdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/density_dependent_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/enol_peptide_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/histidines.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/hpdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/hydrogen_bonding.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/investigate_rotamer_space.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/mcl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/metal_coordination_library.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/multi_base_class.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/multi_residue_class.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/nucleotides.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/omega.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/omega_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/pH_dependent_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/rdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/rotamers.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/sf4_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/testing_utils.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_esd.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_enol_peptide.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_hpdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_01.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_02.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_03.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mutli_residue.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_omega_cdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_pH_mechanism.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_rdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/utils.py usr/lib/python3.14/dist-packages/mmtbx/den/ usr/lib/python3.14/dist-packages/mmtbx/den/__init__.py usr/lib/python3.14/dist-packages/mmtbx/den/plot_weights.py usr/lib/python3.14/dist-packages/mmtbx/den/refinement.py usr/lib/python3.14/dist-packages/mmtbx/density_modification/ usr/lib/python3.14/dist-packages/mmtbx/density_modification/__init__.py usr/lib/python3.14/dist-packages/mmtbx/density_modification/tst_density_modification.py usr/lib/python3.14/dist-packages/mmtbx/disorder/ usr/lib/python3.14/dist-packages/mmtbx/disorder/__init__.py usr/lib/python3.14/dist-packages/mmtbx/disorder/analyze_model.py usr/lib/python3.14/dist-packages/mmtbx/disorder/backbone.py usr/lib/python3.14/dist-packages/mmtbx/disorder/tst.py usr/lib/python3.14/dist-packages/mmtbx/disorder/tst_analyze_model.py usr/lib/python3.14/dist-packages/mmtbx/disorder/tst_backbone.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/ usr/lib/python3.14/dist-packages/mmtbx/dynamics/__init__.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/cartesian_dynamics.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/constants.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/ensemble_cd.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/simulated_annealing.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/tst_cartesian_dynamics.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/tst_sa.py usr/lib/python3.14/dist-packages/mmtbx/f_model/ usr/lib/python3.14/dist-packages/mmtbx/f_model/__init__.py usr/lib/python3.14/dist-packages/mmtbx/f_model/f_model.py usr/lib/python3.14/dist-packages/mmtbx/f_model/f_model_info.py usr/lib/python3.14/dist-packages/mmtbx/geometry/ usr/lib/python3.14/dist-packages/mmtbx/geometry/__init__.py usr/lib/python3.14/dist-packages/mmtbx/geometry/altloc.py usr/lib/python3.14/dist-packages/mmtbx/geometry/asa.py usr/lib/python3.14/dist-packages/mmtbx/geometry/clash.py usr/lib/python3.14/dist-packages/mmtbx/geometry/indexing.py usr/lib/python3.14/dist-packages/mmtbx/geometry/shared_types.py usr/lib/python3.14/dist-packages/mmtbx/geometry/sphere_surface_sampling.py usr/lib/python3.14/dist-packages/mmtbx/geometry/topology.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/ usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/__init__.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/afitt.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/base_qm_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/c_beta.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/external.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/geo_file_parsing.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/mopac_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/orca_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/qi_utils.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/qm_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/quantum_interface.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/quantum_restraints_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/ramachandran.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/reference.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_c_beta_restraints.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_geo_file_parsing.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_orca_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_ramachandran.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate2.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_replace_in_place.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_xtb_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/xtb_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/ usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/__init__.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/reference_model.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/utils.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/ usr/lib/python3.14/dist-packages/mmtbx/hydrogens/__init__.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/build_hydrogens.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/connectivity.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/neutron_utils.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/parameterization.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/reduce_hydrogen.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/riding.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/specialised_hydrogen_atoms.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_1.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_10.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_11.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_12.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_13.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_14.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_15.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_16.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_2.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_3.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_4.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_5.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_6.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_7.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_8.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_9.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_time.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_connectivity.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_const_dihedral.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_1.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_2.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_3.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_4.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_5.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_6.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_7.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_8.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_9.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_coefficients.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_1.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_2.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_3.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_4.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_5.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_manager.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_minimize.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_validate_H.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/validate_H.py usr/lib/python3.14/dist-packages/mmtbx/ias/ usr/lib/python3.14/dist-packages/mmtbx/ias/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ias/tst_ias.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/ usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/__init__.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/all_his.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/rotamer_manager.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/sample_rotamers.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/tst.py usr/lib/python3.14/dist-packages/mmtbx/ions/ usr/lib/python3.14/dist-packages/mmtbx/ions/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ions/build.py usr/lib/python3.14/dist-packages/mmtbx/ions/environment.py usr/lib/python3.14/dist-packages/mmtbx/ions/geometry.py usr/lib/python3.14/dist-packages/mmtbx/ions/halides.py usr/lib/python3.14/dist-packages/mmtbx/ions/identify.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_environment.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_geometries.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_parameters.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_approx_zn.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_ca.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_ca_svm.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_k.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_mg.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pickle.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_symmetry_axis.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_utils.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_validate_ca.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_validate_mg.py usr/lib/python3.14/dist-packages/mmtbx/ions/utils.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/ usr/lib/python3.14/dist-packages/mmtbx/ions/svm/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/dump_sites.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/tst_classifier_01.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/tst_classifier_02.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/utils.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/ usr/lib/python3.14/dist-packages/mmtbx/kinemage/__init__.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/nrubs.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/ribbon_rendering.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/ribbons.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/tst_validation.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/validation.py usr/lib/python3.14/dist-packages/mmtbx/ligands/ usr/lib/python3.14/dist-packages/mmtbx/ligands/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ligands/chemistry.py usr/lib/python3.14/dist-packages/mmtbx/ligands/electrons.py usr/lib/python3.14/dist-packages/mmtbx/ligands/hierarchy_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/rdkit_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/ready_set_basics.py usr/lib/python3.14/dist-packages/mmtbx/ligands/ready_set_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/tst_electron_scripting.py usr/lib/python3.14/dist-packages/mmtbx/ligands/tst_ready_set_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/tst_xtal_screens.py usr/lib/python3.14/dist-packages/mmtbx/ligands/xtal_screens.py usr/lib/python3.14/dist-packages/mmtbx/maps/ usr/lib/python3.14/dist-packages/mmtbx/maps/__init__.py usr/lib/python3.14/dist-packages/mmtbx/maps/composite_omit_map.py usr/lib/python3.14/dist-packages/mmtbx/maps/correlation.py usr/lib/python3.14/dist-packages/mmtbx/maps/fem.py usr/lib/python3.14/dist-packages/mmtbx/maps/fobs_minus_fobs_map.py usr/lib/python3.14/dist-packages/mmtbx/maps/kick.py usr/lib/python3.14/dist-packages/mmtbx/maps/map_model_cc.py usr/lib/python3.14/dist-packages/mmtbx/maps/mtriage.py usr/lib/python3.14/dist-packages/mmtbx/maps/polder.py usr/lib/python3.14/dist-packages/mmtbx/maps/superpose.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_composite_omit_map.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_composite_omit_map_2.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_composite_omit_map_3.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_correlation.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py usr/lib/python3.14/dist-packages/mmtbx/maps/utils.py usr/lib/python3.14/dist-packages/mmtbx/maps/xtrapol8.py usr/lib/python3.14/dist-packages/mmtbx/masks/ usr/lib/python3.14/dist-packages/mmtbx/masks/__init__.py usr/lib/python3.14/dist-packages/mmtbx/masks/tst_asu_mask.py usr/lib/python3.14/dist-packages/mmtbx/masks/tst_masks.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/ usr/lib/python3.14/dist-packages/mmtbx/max_lik/__init__.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/max_like_non_uniform.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/maxlik.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/tst_max_lik.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/tst_maxlik.py usr/lib/python3.14/dist-packages/mmtbx/model/ usr/lib/python3.14/dist-packages/mmtbx/model/__init__.py usr/lib/python3.14/dist-packages/mmtbx/model/model.py usr/lib/python3.14/dist-packages/mmtbx/model/restraints.py usr/lib/python3.14/dist-packages/mmtbx/model/statistics.py usr/lib/python3.14/dist-packages/mmtbx/model/utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/ usr/lib/python3.14/dist-packages/mmtbx/monomer_library/__init__.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/bondlength_defaults.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/cif_triage.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/cif_types.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/conformation_dependent_restraints.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/conv_v2_v3.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/correct_hydrogen_geometries.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/geostd_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/glyco_chiral_values.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/glyco_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/hydrogen_restrictions.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/idealized_aa.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/linking_mixins.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/linking_setup.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/linking_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/mmtbx_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/pdb_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/populate_auto_linking_origin_ids.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/rna_sugar_pucker_analysis.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/rotamer_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/server.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_all_cif_files.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_carbo_linking.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_chg.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_cif_triage.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_cif_types.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_correct_hydrogens.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_deuterium_terminii.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_glyco_coordination.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_glyco_hand.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_idealized_aa.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_iron_sulfur_clusters.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_linking.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_metal_coordination.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_motif.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_neutron_distance.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_paral_geo.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_2.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_3.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_4.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_5.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_protein_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_rna_dna_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_rotamer_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_selection.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_server.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_superpose_ideal.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_user_supplied_library.py usr/lib/python3.14/dist-packages/mmtbx/nci/ usr/lib/python3.14/dist-packages/mmtbx/nci/__init__.py usr/lib/python3.14/dist-packages/mmtbx/nci/data_filtering.py usr/lib/python3.14/dist-packages/mmtbx/nci/hbond.py usr/lib/python3.14/dist-packages/mmtbx/nci/skew_kurt_plot.py usr/lib/python3.14/dist-packages/mmtbx/nci/tst_hbond.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ usr/lib/python3.14/dist-packages/mmtbx/ncs/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ncs/cartesian_restraints.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ligands.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_params.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_restraints_group_list.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_search.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_utils.py usr/lib/python3.14/dist-packages/mmtbx/ncs/tncs.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/ usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/__init__.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/pair_interaction.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_00.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_01.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_02.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_03.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_04.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_05.py usr/lib/python3.14/dist-packages/mmtbx/polygon/ usr/lib/python3.14/dist-packages/mmtbx/polygon/__init__.py usr/lib/python3.14/dist-packages/mmtbx/polygon/output.py usr/lib/python3.14/dist-packages/mmtbx/polygon/tst.py usr/lib/python3.14/dist-packages/mmtbx/polygon/tst_gui.py usr/lib/python3.14/dist-packages/mmtbx/polygon/tst_polygon_data.py usr/lib/python3.14/dist-packages/mmtbx/probe/ usr/lib/python3.14/dist-packages/mmtbx/probe/AtomTypes.py usr/lib/python3.14/dist-packages/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py usr/lib/python3.14/dist-packages/mmtbx/probe/Helpers.py usr/lib/python3.14/dist-packages/mmtbx/probe/__init__.py usr/lib/python3.14/dist-packages/mmtbx/probe/tst_mmtbx_probe_ext.py usr/lib/python3.14/dist-packages/mmtbx/programs/ usr/lib/python3.14/dist-packages/mmtbx/programs/__init__.py usr/lib/python3.14/dist-packages/mmtbx/programs/arginine_geometry.py usr/lib/python3.14/dist-packages/mmtbx/programs/atom_selection.py usr/lib/python3.14/dist-packages/mmtbx/programs/atom_valence_simple.py usr/lib/python3.14/dist-packages/mmtbx/programs/barbed_wire_analysis.py usr/lib/python3.14/dist-packages/mmtbx/programs/cablam.py usr/lib/python3.14/dist-packages/mmtbx/programs/cablam_idealization.py usr/lib/python3.14/dist-packages/mmtbx/programs/cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/programs/chiral_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/clashscore.py usr/lib/python3.14/dist-packages/mmtbx/programs/clashscore2.py usr/lib/python3.14/dist-packages/mmtbx/programs/comparama.py usr/lib/python3.14/dist-packages/mmtbx/programs/debug_riding.py usr/lib/python3.14/dist-packages/mmtbx/programs/elbow_services.py usr/lib/python3.14/dist-packages/mmtbx/programs/emringer.py usr/lib/python3.14/dist-packages/mmtbx/programs/fetch.py usr/lib/python3.14/dist-packages/mmtbx/programs/fmodel.py usr/lib/python3.14/dist-packages/mmtbx/programs/hbond.py usr/lib/python3.14/dist-packages/mmtbx/programs/holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/hydrogenate.py usr/lib/python3.14/dist-packages/mmtbx/programs/ligand_restraints_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/mask.py usr/lib/python3.14/dist-packages/mmtbx/programs/matthews.py usr/lib/python3.14/dist-packages/mmtbx/programs/model_vs_sequence.py usr/lib/python3.14/dist-packages/mmtbx/programs/mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/programs/next_gen_atom_typing.py usr/lib/python3.14/dist-packages/mmtbx/programs/next_gen_residue_typing.py usr/lib/python3.14/dist-packages/mmtbx/programs/nonbonded_overlaps.py usr/lib/python3.14/dist-packages/mmtbx/programs/omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/programs/pdb_as_cif.py usr/lib/python3.14/dist-packages/mmtbx/programs/pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/programs/polder.py usr/lib/python3.14/dist-packages/mmtbx/programs/prepare_pdb_deposition.py usr/lib/python3.14/dist-packages/mmtbx/programs/probe2.py usr/lib/python3.14/dist-packages/mmtbx/programs/probescore_ligand.py usr/lib/python3.14/dist-packages/mmtbx/programs/process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/programs/quantum_interface.py usr/lib/python3.14/dist-packages/mmtbx/programs/rama_z.py usr/lib/python3.14/dist-packages/mmtbx/programs/ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/programs/real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/programs/reduce2.py usr/lib/python3.14/dist-packages/mmtbx/programs/reduce_cryoem_resolution.py usr/lib/python3.14/dist-packages/mmtbx/programs/ribbons.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate_puckers.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate_suites.py usr/lib/python3.14/dist-packages/mmtbx/programs/rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/programs/ss_idealization.py usr/lib/python3.14/dist-packages/mmtbx/programs/ss_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/suitename.py usr/lib/python3.14/dist-packages/mmtbx/programs/suitename_old.py usr/lib/python3.14/dist-packages/mmtbx/programs/taam_minus_iam.py usr/lib/python3.14/dist-packages/mmtbx/programs/undowser.py usr/lib/python3.14/dist-packages/mmtbx/programs/undowser2.py usr/lib/python3.14/dist-packages/mmtbx/programs/validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/programs/water_b_factors.py usr/lib/python3.14/dist-packages/mmtbx/programs/xtrapol8.py usr/lib/python3.14/dist-packages/mmtbx/real_space/ usr/lib/python3.14/dist-packages/mmtbx/real_space/__init__.py usr/lib/python3.14/dist-packages/mmtbx/real_space/tst.py usr/lib/python3.14/dist-packages/mmtbx/reduce/ usr/lib/python3.14/dist-packages/mmtbx/reduce/InteractionGraph.py usr/lib/python3.14/dist-packages/mmtbx/reduce/Movers.py usr/lib/python3.14/dist-packages/mmtbx/reduce/Optimizers.py usr/lib/python3.14/dist-packages/mmtbx/reduce/__init__.py usr/lib/python3.14/dist-packages/mmtbx/reduce/tst_mmtbx_reduce_ext.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ usr/lib/python3.14/dist-packages/mmtbx/refinement/__init__.py usr/lib/python3.14/dist-packages/mmtbx/refinement/adp_refinement.py usr/lib/python3.14/dist-packages/mmtbx/refinement/anomalous_scatterer_groups.py usr/lib/python3.14/dist-packages/mmtbx/refinement/calculators.py usr/lib/python3.14/dist-packages/mmtbx/refinement/data.py usr/lib/python3.14/dist-packages/mmtbx/refinement/energy_monitor.py usr/lib/python3.14/dist-packages/mmtbx/refinement/flip_peptide_side_chain.py usr/lib/python3.14/dist-packages/mmtbx/refinement/geometry_minimization.py usr/lib/python3.14/dist-packages/mmtbx/refinement/group.py usr/lib/python3.14/dist-packages/mmtbx/refinement/inspect_tardy_trajectory.py usr/lib/python3.14/dist-packages/mmtbx/refinement/minimization.py usr/lib/python3.14/dist-packages/mmtbx/refinement/minimization_monitor.py usr/lib/python3.14/dist-packages/mmtbx/refinement/minimization_ncs_constraints.py usr/lib/python3.14/dist-packages/mmtbx/refinement/occupancies.py usr/lib/python3.14/dist-packages/mmtbx/refinement/orca.py usr/lib/python3.14/dist-packages/mmtbx/refinement/print_statistics.py usr/lib/python3.14/dist-packages/mmtbx/refinement/refinement_flags.py usr/lib/python3.14/dist-packages/mmtbx/refinement/restraints.py usr/lib/python3.14/dist-packages/mmtbx/refinement/rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/select_best_starting_model.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tardy.py usr/lib/python3.14/dist-packages/mmtbx/refinement/targets.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_anomalous_scatterer_groups.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_fit_rotamers.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_group.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_group_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_misc.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_occupancy_selections.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_real_space_simple.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_refinement_flags.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_select_best_starting_model.py usr/lib/python3.14/dist-packages/mmtbx/refinement/utils.py usr/lib/python3.14/dist-packages/mmtbx/refinement/weights.py usr/lib/python3.14/dist-packages/mmtbx/refinement/weights_params.py usr/lib/python3.14/dist-packages/mmtbx/refinement/wrappers.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/ usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/__init__.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_probability.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_utils.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/ usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/__init__.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/adp.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/explode_and_refine.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_his.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_residue.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_residues.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_small_molecule.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_water.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/individual_sites.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/occupancy.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0H.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1H.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_3.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_4.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_5.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_6.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_7.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1H.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_3.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_4.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_5.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_6.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_selection.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_water.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_1.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_3.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_monitor.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_weight.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/utils.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/weight.py usr/lib/python3.14/dist-packages/mmtbx/regression/ usr/lib/python3.14/dist-packages/mmtbx/regression/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/make_fake_anomalous_data.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_add_arrows_on_plot.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_add_h_to_water.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_adp_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_alignment.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_altloc_chain_break.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_altloc_remediate.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_angle.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_anomalous_substructure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_apply_cif_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_arginine_geometry.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_cc_star.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_chain_comparison.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_chain_comparison_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_cif_as_mtz_wavelengths.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_cis_trans_peptide_link.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_clashes.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_command_line_input.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_domains_from_pae.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_domains_from_pae_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_dynamics_cli.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_examples.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_find_ncs.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_find_ss_structure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_find_ss_structure_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_flipping_his.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_and_dm.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_fd.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_misc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_no_cryst1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_geo_min_restraints_phil.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_geometry_minimization.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_isomorphous_difference_misc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ligand_interactions.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ligand_ncs.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_loop_closure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_lrv.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_map_model_cc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_map_type_parser.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_maps_misc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_metal_link_1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_minimize_chain.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ml_estimate.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_model_map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_model_vs_map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_model_vs_sequence.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_models_to_from_chains.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_msa.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mtz2map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_multi_residue_class.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ordered_solvent.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_origin_ids.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_3.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_4.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_box.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_ccs.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_probe.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_process_predicted_model_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_prune_model.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_psi_phi_extraction.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_rank_scale_map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_rdkit_utils_fragmentation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_rdkit_utils_molecule.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce2_no_symmetry.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce_cryoem_resolution.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce_custom_bond.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce_switch.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce_timeout.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_refine_anomalous_substructure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_regularize_from_pdb.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_regularize_from_pdb_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ribbons.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_rigid_bond_test.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ringer.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_sampled_model_density.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_scattering_table.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_scattering_type_registry.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_schrodinger_interface.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_sequence_validation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_sort_hetatms.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_special_term_at_end.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ss_validation_long_chainids.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_statistics_output.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_superpose.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_table_one.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_utils.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validate_ligands_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validate_ligands_3.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validate_ligands_4.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validation_summary.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/ usr/lib/python3.14/dist-packages/mmtbx/regression/model/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_cart_ref_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_dedeuterate.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_get_vdw_radii.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_merge.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_mtrix.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_ncs.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_neutralize_scatterers.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_pairs_within.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_ramachandran.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_remove_alternative_conformations.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_symmetry.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_tors_ref_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_utils_merge_models.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/ usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_search.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_search_flips.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_utils.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/ usr/lib/python3.14/dist-packages/mmtbx/regression/tls/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_get_t_scheme.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_analysis.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_as_xyz.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_refinement_fft.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_utils.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py usr/lib/python3.14/dist-packages/mmtbx/ringer/ usr/lib/python3.14/dist-packages/mmtbx/ringer/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ringer/em_rolling.py usr/lib/python3.14/dist-packages/mmtbx/ringer/em_rscc.py usr/lib/python3.14/dist-packages/mmtbx/ringer/em_scoring.py usr/lib/python3.14/dist-packages/mmtbx/ringer/emringer.py usr/lib/python3.14/dist-packages/mmtbx/ringer/tst_em_rscc.py usr/lib/python3.14/dist-packages/mmtbx/ringer/tst_emringer.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/ usr/lib/python3.14/dist-packages/mmtbx/rotamer/__init__.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/graphics.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/n_dim_table.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/nqh.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/ramachandran_eval.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/ramachandran_eval_deprecated.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/rotamer_eval.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/sidechain_angles.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/tst_rotamer_eval.py usr/lib/python3.14/dist-packages/mmtbx/rsr/ usr/lib/python3.14/dist-packages/mmtbx/rsr/__init__.py usr/lib/python3.14/dist-packages/mmtbx/rsr/tst.py usr/lib/python3.14/dist-packages/mmtbx/scaling/ usr/lib/python3.14/dist-packages/mmtbx/scaling/__init__.py usr/lib/python3.14/dist-packages/mmtbx/scaling/absence_likelihood.py usr/lib/python3.14/dist-packages/mmtbx/scaling/absences.py usr/lib/python3.14/dist-packages/mmtbx/scaling/absolute_scaling.py usr/lib/python3.14/dist-packages/mmtbx/scaling/basic_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/bayesian_estimator.py usr/lib/python3.14/dist-packages/mmtbx/scaling/data_statistics.py usr/lib/python3.14/dist-packages/mmtbx/scaling/fa_estimation.py usr/lib/python3.14/dist-packages/mmtbx/scaling/make_param.py usr/lib/python3.14/dist-packages/mmtbx/scaling/massage_twin_detwin_data.py usr/lib/python3.14/dist-packages/mmtbx/scaling/matthews.py usr/lib/python3.14/dist-packages/mmtbx/scaling/mean_f_rms_f.py usr/lib/python3.14/dist-packages/mmtbx/scaling/outlier_plots.py usr/lib/python3.14/dist-packages/mmtbx/scaling/outlier_rejection.py usr/lib/python3.14/dist-packages/mmtbx/scaling/pair_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/plan_sad_experiment.py usr/lib/python3.14/dist-packages/mmtbx/scaling/pre_scale.py usr/lib/python3.14/dist-packages/mmtbx/scaling/random_omit.py usr/lib/python3.14/dist-packages/mmtbx/scaling/relative_scaling.py usr/lib/python3.14/dist-packages/mmtbx/scaling/relative_wilson.py usr/lib/python3.14/dist-packages/mmtbx/scaling/remove_outliers.py usr/lib/python3.14/dist-packages/mmtbx/scaling/sigmaa_estimation.py usr/lib/python3.14/dist-packages/mmtbx/scaling/ta_alpha_beta_calc.py usr/lib/python3.14/dist-packages/mmtbx/scaling/thorough_outlier_test.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_absences.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_bayesian_estimator.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_massage_data.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_mean_f_rms_f.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_outlier.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_plan_sad_experiment.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_scaling.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_sigmaa.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_xtriage.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_xtriage_twin_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/twin_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/twmad_scale.py usr/lib/python3.14/dist-packages/mmtbx/scaling/xtriage.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/ usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/__init__.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/find_ss_from_ca.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/nucleic_acids.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/proteins.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/regularize_from_pdb.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/secondary_structure_params.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/ss_validation.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/tst.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/tst_insertion_codes.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/tst_segid.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/utils.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/ usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/__init__.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/ss_idealization.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_1.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_2.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_3.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_io.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_ss_id_ncs.py usr/lib/python3.14/dist-packages/mmtbx/sisa/ usr/lib/python3.14/dist-packages/mmtbx/sisa/__init__.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/ usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/__init__.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_ga.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_input.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_masks.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_mtz.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_optimize.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_util.py usr/lib/python3.14/dist-packages/mmtbx/solvent/ usr/lib/python3.14/dist-packages/mmtbx/solvent/__init__.py usr/lib/python3.14/dist-packages/mmtbx/solvent/ensemble_ordered_solvent.py usr/lib/python3.14/dist-packages/mmtbx/solvent/map_to_water.py usr/lib/python3.14/dist-packages/mmtbx/solvent/ordered_solvent.py usr/lib/python3.14/dist-packages/mmtbx/suitename/ usr/lib/python3.14/dist-packages/mmtbx/suitename/__init__.py usr/lib/python3.14/dist-packages/mmtbx/suitename/diangle.py usr/lib/python3.14/dist-packages/mmtbx/suitename/dualparse.py usr/lib/python3.14/dist-packages/mmtbx/suitename/mainchain.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitealyze.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitename.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitenamedefs.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suiteninit.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suiteninput.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitenout.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suites.py usr/lib/python3.14/dist-packages/mmtbx/suitename/transdent.py usr/lib/python3.14/dist-packages/mmtbx/tls/ usr/lib/python3.14/dist-packages/mmtbx/tls/__init__.py usr/lib/python3.14/dist-packages/mmtbx/tls/analysis.py usr/lib/python3.14/dist-packages/mmtbx/tls/command_line.py usr/lib/python3.14/dist-packages/mmtbx/tls/decompose.py usr/lib/python3.14/dist-packages/mmtbx/tls/ladp.py usr/lib/python3.14/dist-packages/mmtbx/tls/optimise_amplitudes.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm10.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm11.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm12.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm13.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm14.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm15.py usr/lib/python3.14/dist-packages/mmtbx/tls/tls_as_xyz.py usr/lib/python3.14/dist-packages/mmtbx/tls/tools.py usr/lib/python3.14/dist-packages/mmtbx/tls/utils.py usr/lib/python3.14/dist-packages/mmtbx/twinning/ usr/lib/python3.14/dist-packages/mmtbx/twinning/__init__.py usr/lib/python3.14/dist-packages/mmtbx/twinning/probabalistic_detwinning.py usr/lib/python3.14/dist-packages/mmtbx/twinning/twin_f_model.py usr/lib/python3.14/dist-packages/mmtbx/utils/ usr/lib/python3.14/dist-packages/mmtbx/utils/__init__.py usr/lib/python3.14/dist-packages/mmtbx/utils/fab_elbow_angle.py usr/lib/python3.14/dist-packages/mmtbx/utils/grid2d.py usr/lib/python3.14/dist-packages/mmtbx/utils/ntc.py usr/lib/python3.14/dist-packages/mmtbx/utils/rotatable_bonds.py usr/lib/python3.14/dist-packages/mmtbx/utils/tst_switch_rotamers.py usr/lib/python3.14/dist-packages/mmtbx/validation/ usr/lib/python3.14/dist-packages/mmtbx/validation/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/analyze_peptides.py usr/lib/python3.14/dist-packages/mmtbx/validation/barbed_wire_analysis.py usr/lib/python3.14/dist-packages/mmtbx/validation/cablam.py usr/lib/python3.14/dist-packages/mmtbx/validation/cbd_utils.py usr/lib/python3.14/dist-packages/mmtbx/validation/cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/validation/chain_comparison.py usr/lib/python3.14/dist-packages/mmtbx/validation/clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/clashscore2.py usr/lib/python3.14/dist-packages/mmtbx/validation/comparama.py usr/lib/python3.14/dist-packages/mmtbx/validation/comprehensive_residue.py usr/lib/python3.14/dist-packages/mmtbx/validation/convert_lists.py usr/lib/python3.14/dist-packages/mmtbx/validation/datasets.py usr/lib/python3.14/dist-packages/mmtbx/validation/ensembles.py usr/lib/python3.14/dist-packages/mmtbx/validation/experimental.py usr/lib/python3.14/dist-packages/mmtbx/validation/fav_lists.py usr/lib/python3.14/dist-packages/mmtbx/validation/graphics.py usr/lib/python3.14/dist-packages/mmtbx/validation/holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/validation/ligand_interactions.py usr/lib/python3.14/dist-packages/mmtbx/validation/ligands.py usr/lib/python3.14/dist-packages/mmtbx/validation/mean_devs_PRO_phi_psi.py usr/lib/python3.14/dist-packages/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py usr/lib/python3.14/dist-packages/mmtbx/validation/mean_devs_others_phi_psi.py usr/lib/python3.14/dist-packages/mmtbx/validation/model_properties.py usr/lib/python3.14/dist-packages/mmtbx/validation/mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/validation/omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/phi_psi_2_data.py usr/lib/python3.14/dist-packages/mmtbx/validation/rama_z.py usr/lib/python3.14/dist-packages/mmtbx/validation/ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/restraints.py usr/lib/python3.14/dist-packages/mmtbx/validation/rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/validation/rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/sequence.py usr/lib/python3.14/dist-packages/mmtbx/validation/undowser.py usr/lib/python3.14/dist-packages/mmtbx/validation/undowser2.py usr/lib/python3.14/dist-packages/mmtbx/validation/utils.py usr/lib/python3.14/dist-packages/mmtbx/validation/validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/validation/waters.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/ usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/kinemage_templates.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/mp_geo.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/percentile_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/percentile_mpscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/probescore_ligand.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/table_from_json.py usr/lib/python3.14/dist-packages/mmtbx/validation/ramachandran/ usr/lib/python3.14/dist-packages/mmtbx/validation/ramachandran/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/ramachandran/convert_from_text.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/ usr/lib/python3.14/dist-packages/mmtbx/validation/regression/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/run_restraints.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_barbed_wire_analysis.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cablam.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cablam_2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cbetadev_02.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_chiral_validation.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_clashscore_2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_do_flips_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_experimental.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_find_region_max_value.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_keep_hydrogens.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_model_properties.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_1.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_3.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_4.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_5.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_arguments.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_geo.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_geo_endtoend.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rama_z_01.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rama_z_02.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_ramalyze2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_ramalyze_rare.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_restraints.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_suitename.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_symmetry_SS.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_undowser.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_undowser2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_utils.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_waters.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/ usr/lib/python3.14/dist-packages/mmtbx/wwpdb/__init__.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/rcsb_entry_request.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/rcsb_web_services.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/tst_rcsb_entry_request.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/tst_rcsb_web_services.py usr/lib/python3.14/dist-packages/omptbx/ usr/lib/python3.14/dist-packages/omptbx/__init__.py usr/lib/python3.14/dist-packages/omptbx/tst.py usr/lib/python3.14/dist-packages/qttbx/ usr/lib/python3.14/dist-packages/qttbx/__init__.py usr/lib/python3.14/dist-packages/qttbx/phil.py usr/lib/python3.14/dist-packages/qttbx/qt.py usr/lib/python3.14/dist-packages/qttbx/run_tests.py usr/lib/python3.14/dist-packages/qttbx/examples/ usr/lib/python3.14/dist-packages/qttbx/examples/__init__.py usr/lib/python3.14/dist-packages/qttbx/examples/_helpers.py usr/lib/python3.14/dist-packages/qttbx/examples/data_manager_example.py usr/lib/python3.14/dist-packages/qttbx/examples/phil_widgets_example.py usr/lib/python3.14/dist-packages/qttbx/regression/ usr/lib/python3.14/dist-packages/qttbx/regression/__init__.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_agent_core.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_approval_coordinator.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_artifact_panel.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_auto_height.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_conversation_widgets.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_credentials_dialog.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_diagnostics.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_eliding.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_image.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_logging_setup.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_markdown.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_mcp_client.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_message_bubble.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_message_input.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_overlay_anchor.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_profile.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_question_card.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_runner.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_search.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_session.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_skills.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_storage.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_storage_session.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_subagent.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_subagent_view.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_tool_approval.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_tools.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_window_chrome.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_data_manager_widget.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_phil_widgets.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_run_tests_manifest.py usr/lib/python3.14/dist-packages/qttbx/viewers/ usr/lib/python3.14/dist-packages/qttbx/viewers/__init__.py usr/lib/python3.14/dist-packages/qttbx/viewers/chimerax.py usr/lib/python3.14/dist-packages/qttbx/widgets/ usr/lib/python3.14/dist-packages/qttbx/widgets/__init__.py usr/lib/python3.14/dist-packages/qttbx/widgets/font_init.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/ usr/lib/python3.14/dist-packages/qttbx/widgets/chat/__init__.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/artifact.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/artifact_panel.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/auto_height.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/chat_top_bar.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/conversation_list.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/conversation_search.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/conversation_view.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/credentials_dialog.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/diagnostics.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/edge_rail.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/eliding.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/image_cache.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/image_lightbox.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/logging_setup.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/markdown_export.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/markdown_view.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/message_bubble.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/message_input.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/overlay_anchor.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/question_card.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/search_bar.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/tool_approval.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/tool_call_disclosure.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/ usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/__init__.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/approval.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/base.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/conversation.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/errors.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/events.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/mcp_client.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/paths.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/profile.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/runner.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/session.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/skills.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/storage.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/subagent.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/tools.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/ usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/__init__.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/_binding_popup.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/_delegate.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/_phil_helpers.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/_table_model.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/ usr/lib/python3.14/dist-packages/qttbx/widgets/phil/__init__.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/_colors.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/atom_selection.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/bool_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/choice_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/delegate.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/float_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/floats_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/int_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/ints_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/key_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/multiple.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/path_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/qstr_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/space_group.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/str_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/strings_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/text_base.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/unit_cell.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/words_widget.py usr/lib/python3.14/dist-packages/rstbx/ usr/lib/python3.14/dist-packages/rstbx/__init__.py usr/lib/python3.14/dist-packages/rstbx/run_tests.py usr/lib/python3.14/dist-packages/rstbx/utils.py usr/lib/python3.14/dist-packages/rstbx/apps/ usr/lib/python3.14/dist-packages/rstbx/apps/__init__.py usr/lib/python3.14/dist-packages/rstbx/apps/dual_resolution_helpers.py usr/lib/python3.14/dist-packages/rstbx/apps/slip_helpers.py usr/lib/python3.14/dist-packages/rstbx/apps/spot_markup.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/ usr/lib/python3.14/dist-packages/rstbx/apps/stills/__init__.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/dials_refinement_preceding_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/simple_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/stills_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/util.py usr/lib/python3.14/dist-packages/rstbx/array_family/ usr/lib/python3.14/dist-packages/rstbx/array_family/__init__.py usr/lib/python3.14/dist-packages/rstbx/array_family/flex.py usr/lib/python3.14/dist-packages/rstbx/bandpass/ usr/lib/python3.14/dist-packages/rstbx/bandpass/__init__.py usr/lib/python3.14/dist-packages/rstbx/bandpass/simulated_annealing.py usr/lib/python3.14/dist-packages/rstbx/bpcx/ usr/lib/python3.14/dist-packages/rstbx/bpcx/__init__.py usr/lib/python3.14/dist-packages/rstbx/bpcx/compare_mosflm_xds.py usr/lib/python3.14/dist-packages/rstbx/bpcx/ersatz_misset.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2_positions.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2_positions_idx.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2_validate.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2a.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/ usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/__init__.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/detector.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/instrument_specifics.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/tst_detector_model.py usr/lib/python3.14/dist-packages/rstbx/cftbx/ usr/lib/python3.14/dist-packages/rstbx/cftbx/__init__.py usr/lib/python3.14/dist-packages/rstbx/cftbx/coordinate_frame_converter.py usr/lib/python3.14/dist-packages/rstbx/cftbx/coordinate_frame_helpers.py usr/lib/python3.14/dist-packages/rstbx/cftbx/tst_coordinate_frame_converter.py usr/lib/python3.14/dist-packages/rstbx/command_line/ usr/lib/python3.14/dist-packages/rstbx/command_line/__init__.py usr/lib/python3.14/dist-packages/rstbx/command_line/example_viewer.py usr/lib/python3.14/dist-packages/rstbx/command_line/index.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.create.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.explore_completeness.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.solver.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.wx_display.py usr/lib/python3.14/dist-packages/rstbx/command_line/slip_viewer.py usr/lib/python3.14/dist-packages/rstbx/command_line/viewer.py usr/lib/python3.14/dist-packages/rstbx/detectors/ usr/lib/python3.14/dist-packages/rstbx/detectors/__init__.py usr/lib/python3.14/dist-packages/rstbx/detectors/silicon.py usr/lib/python3.14/dist-packages/rstbx/dials_core/ usr/lib/python3.14/dist-packages/rstbx/dials_core/__init__.py usr/lib/python3.14/dist-packages/rstbx/dials_core/integration_core.py usr/lib/python3.14/dist-packages/rstbx/diffraction/ usr/lib/python3.14/dist-packages/rstbx/diffraction/__init__.py usr/lib/python3.14/dist-packages/rstbx/diffraction/tst_ewald_sphere.py usr/lib/python3.14/dist-packages/rstbx/diffraction/tst_partial_derivatives.py usr/lib/python3.14/dist-packages/rstbx/diffraction/tst_predict.py usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/ usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/__init__.py usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/tst_utils_clustering.py usr/lib/python3.14/dist-packages/rstbx/dps_core/ usr/lib/python3.14/dist-packages/rstbx/dps_core/__init__.py usr/lib/python3.14/dist-packages/rstbx/dps_core/basis_choice.py usr/lib/python3.14/dist-packages/rstbx/dps_core/cell_assessment.py usr/lib/python3.14/dist-packages/rstbx/dps_core/constrainment.py usr/lib/python3.14/dist-packages/rstbx/dps_core/lepage.py usr/lib/python3.14/dist-packages/rstbx/dps_core/sampling.py usr/lib/python3.14/dist-packages/rstbx/dps_core/tst_iotbx_converter.py usr/lib/python3.14/dist-packages/rstbx/dps_core/zuoreduction.py usr/lib/python3.14/dist-packages/rstbx/indexing/ usr/lib/python3.14/dist-packages/rstbx/indexing/__init__.py usr/lib/python3.14/dist-packages/rstbx/indexing/do_index.py usr/lib/python3.14/dist-packages/rstbx/indexing/tst_auto_monoscan.py usr/lib/python3.14/dist-packages/rstbx/indexing/tst_dataset1.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/ usr/lib/python3.14/dist-packages/rstbx/indexing_api/__init__.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/basis_choice.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/force_cell.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/lattice.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/nearest_neighbor.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/outlier_detection.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/outlier_procedure.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/sampling.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/test_dps.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/tools.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/ usr/lib/python3.14/dist-packages/rstbx/new_horizons/__init__.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/index.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/oscillation_shots.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/pixel_spread.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/speckfinder.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/spot_shape.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/stats_index.py usr/lib/python3.14/dist-packages/rstbx/outlier_spots/ usr/lib/python3.14/dist-packages/rstbx/outlier_spots/__init__.py usr/lib/python3.14/dist-packages/rstbx/outlier_spots/fit_distribution.py usr/lib/python3.14/dist-packages/rstbx/phil/ usr/lib/python3.14/dist-packages/rstbx/phil/__init__.py usr/lib/python3.14/dist-packages/rstbx/phil/phil_preferences.py usr/lib/python3.14/dist-packages/rstbx/phil/preferences.py usr/lib/python3.14/dist-packages/rstbx/phil/scope.py usr/lib/python3.14/dist-packages/rstbx/simage/ usr/lib/python3.14/dist-packages/rstbx/simage/__init__.py usr/lib/python3.14/dist-packages/rstbx/simage/create.py usr/lib/python3.14/dist-packages/rstbx/simage/explore_completeness.py usr/lib/python3.14/dist-packages/rstbx/simage/integrate_crude.py usr/lib/python3.14/dist-packages/rstbx/simage/refine_uc_cr.py usr/lib/python3.14/dist-packages/rstbx/simage/run_labelit_index.py usr/lib/python3.14/dist-packages/rstbx/simage/run_spotfinder.py usr/lib/python3.14/dist-packages/rstbx/simage/solver.py usr/lib/python3.14/dist-packages/rstbx/simage/tst.py usr/lib/python3.14/dist-packages/rstbx/simage/wx_display.py usr/lib/python3.14/dist-packages/rstbx/simulation/ usr/lib/python3.14/dist-packages/rstbx/simulation/__init__.py usr/lib/python3.14/dist-packages/rstbx/simulation/constants.py usr/lib/python3.14/dist-packages/rstbx/simulation/sim_pdf.py usr/lib/python3.14/dist-packages/rstbx/simulation/sim_utils.py usr/lib/python3.14/dist-packages/rstbx/simulation/tst_xfel1_simple.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/ usr/lib/python3.14/dist-packages/rstbx/slip_viewer/__init__.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/calibration_frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/example_frame_plugin_hidden.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/pyslip.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/ring_frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/score_frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/slip_display.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/slip_viewer_image_factory.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/tile_generation.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/uc_frame.py usr/lib/python3.14/dist-packages/rstbx/sublattice_support/ usr/lib/python3.14/dist-packages/rstbx/sublattice_support/__init__.py usr/lib/python3.14/dist-packages/rstbx/sublattice_support/change_basis.py usr/lib/python3.14/dist-packages/rstbx/sublattice_support/tst_sublattice.py usr/lib/python3.14/dist-packages/rstbx/symmetry/ usr/lib/python3.14/dist-packages/rstbx/symmetry/__init__.py usr/lib/python3.14/dist-packages/rstbx/symmetry/sgtbx_adaptor.py usr/lib/python3.14/dist-packages/rstbx/symmetry/subgroup.py usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/ usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/__init__.py usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/g_gradients.py usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/parameter_reduction.py usr/lib/python3.14/dist-packages/rstbx/viewer/ usr/lib/python3.14/dist-packages/rstbx/viewer/__init__.py usr/lib/python3.14/dist-packages/rstbx/viewer/calibration.py usr/lib/python3.14/dist-packages/rstbx/viewer/calibration_frame.py usr/lib/python3.14/dist-packages/rstbx/viewer/controls.py usr/lib/python3.14/dist-packages/rstbx/viewer/dataset.py usr/lib/python3.14/dist-packages/rstbx/viewer/display.py usr/lib/python3.14/dist-packages/rstbx/viewer/drivers.py usr/lib/python3.14/dist-packages/rstbx/viewer/frame.py usr/lib/python3.14/dist-packages/rstbx/viewer/indexing.py usr/lib/python3.14/dist-packages/rstbx/viewer/integration.py usr/lib/python3.14/dist-packages/rstbx/viewer/pixels3d.py usr/lib/python3.14/dist-packages/rstbx/viewer/processing.py usr/lib/python3.14/dist-packages/rstbx/viewer/results_base.py usr/lib/python3.14/dist-packages/rstbx/viewer/spotfinder_frame.py usr/lib/python3.14/dist-packages/rstbx/viewer/spotfinder_wrap.py usr/lib/python3.14/dist-packages/rstbx/viewer/tst.py usr/lib/python3.14/dist-packages/scitbx/ usr/lib/python3.14/dist-packages/scitbx/__init__.py usr/lib/python3.14/dist-packages/scitbx/cross_entropy.py usr/lib/python3.14/dist-packages/scitbx/cubicle_neighbors.py usr/lib/python3.14/dist-packages/scitbx/differential_evolution.py usr/lib/python3.14/dist-packages/scitbx/direct_search_simulated_annealing.py usr/lib/python3.14/dist-packages/scitbx/fftpack.py usr/lib/python3.14/dist-packages/scitbx/genetic_algorithm_with_mp.py usr/lib/python3.14/dist-packages/scitbx/golden_section_search.py usr/lib/python3.14/dist-packages/scitbx/lbfgsb.py usr/lib/python3.14/dist-packages/scitbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/scitbx/minimizers.py usr/lib/python3.14/dist-packages/scitbx/minpack.py usr/lib/python3.14/dist-packages/scitbx/r3_utils.py usr/lib/python3.14/dist-packages/scitbx/regular_grid_on_unit_sphere.py usr/lib/python3.14/dist-packages/scitbx/restraints.py usr/lib/python3.14/dist-packages/scitbx/run_tests.py usr/lib/python3.14/dist-packages/scitbx/simplex.py usr/lib/python3.14/dist-packages/scitbx/smoothing.py usr/lib/python3.14/dist-packages/scitbx/array_family/ usr/lib/python3.14/dist-packages/scitbx/array_family/__init__.py usr/lib/python3.14/dist-packages/scitbx/array_family/flex.py usr/lib/python3.14/dist-packages/scitbx/array_family/shared.py usr/lib/python3.14/dist-packages/scitbx/array_family/accessors/ usr/lib/python3.14/dist-packages/scitbx/array_family/accessors/__init__.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/ usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/regression_test.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_flex.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_flex_argument_passing.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_numpy_scalar_conversions.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_shared.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py usr/lib/python3.14/dist-packages/scitbx/array_family/detail/ usr/lib/python3.14/dist-packages/scitbx/array_family/detail/__init__.py usr/lib/python3.14/dist-packages/scitbx/boost_python/ usr/lib/python3.14/dist-packages/scitbx/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/command_line/ usr/lib/python3.14/dist-packages/scitbx/command_line/__init__.py usr/lib/python3.14/dist-packages/scitbx/command_line/apply_tapenade_hints.py usr/lib/python3.14/dist-packages/scitbx/command_line/generate_error_h.py usr/lib/python3.14/dist-packages/scitbx/command_line/histogram.py usr/lib/python3.14/dist-packages/scitbx/command_line/show_exp_times.py usr/lib/python3.14/dist-packages/scitbx/command_line/show_sizes.py usr/lib/python3.14/dist-packages/scitbx/command_line/unicode_examples.py usr/lib/python3.14/dist-packages/scitbx/dtmin/ usr/lib/python3.14/dist-packages/scitbx/dtmin/__init__.py usr/lib/python3.14/dist-packages/scitbx/dtmin/auxiliary.py usr/lib/python3.14/dist-packages/scitbx/dtmin/bounds.py usr/lib/python3.14/dist-packages/scitbx/dtmin/compulsory.py usr/lib/python3.14/dist-packages/scitbx/dtmin/min_logging.py usr/lib/python3.14/dist-packages/scitbx/dtmin/minimizer.py usr/lib/python3.14/dist-packages/scitbx/dtmin/optional.py usr/lib/python3.14/dist-packages/scitbx/dtmin/realsymmetricpseudoinverse.py usr/lib/python3.14/dist-packages/scitbx/dtmin/refinebase.py usr/lib/python3.14/dist-packages/scitbx/dtmin/reparams.py usr/lib/python3.14/dist-packages/scitbx/dtmin/twisted_gaussian.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/ usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/__init__.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py usr/lib/python3.14/dist-packages/scitbx/error/ usr/lib/python3.14/dist-packages/scitbx/error/__init__.py usr/lib/python3.14/dist-packages/scitbx/error/tst_error.py usr/lib/python3.14/dist-packages/scitbx/examples/ usr/lib/python3.14/dist-packages/scitbx/examples/__init__.py usr/lib/python3.14/dist-packages/scitbx/examples/bootstrap.py usr/lib/python3.14/dist-packages/scitbx/examples/chebyshev_lsq_example.py usr/lib/python3.14/dist-packages/scitbx/examples/flex_array_loops.py usr/lib/python3.14/dist-packages/scitbx/examples/flex_grid.py usr/lib/python3.14/dist-packages/scitbx/examples/functions.py usr/lib/python3.14/dist-packages/scitbx/examples/immoptibox_ports.py usr/lib/python3.14/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py usr/lib/python3.14/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py usr/lib/python3.14/dist-packages/scitbx/examples/lbfgs_recipe.py usr/lib/python3.14/dist-packages/scitbx/examples/minimizer_comparisons.py usr/lib/python3.14/dist-packages/scitbx/examples/principal_axes_of_inertia.py usr/lib/python3.14/dist-packages/scitbx/examples/rigid_body_refinement_core.py usr/lib/python3.14/dist-packages/scitbx/examples/bevington/ usr/lib/python3.14/dist-packages/scitbx/examples/bevington/__init__.py usr/lib/python3.14/dist-packages/scitbx/examples/bevington/silver.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/ usr/lib/python3.14/dist-packages/scitbx/glmtbx/__init__.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/boost_python/ usr/lib/python3.14/dist-packages/scitbx/glmtbx/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/tests/ usr/lib/python3.14/dist-packages/scitbx/glmtbx/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/tests/tst.py usr/lib/python3.14/dist-packages/scitbx/graph/ usr/lib/python3.14/dist-packages/scitbx/graph/__init__.py usr/lib/python3.14/dist-packages/scitbx/graph/rigidity.py usr/lib/python3.14/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py usr/lib/python3.14/dist-packages/scitbx/graph/tardy_tree.py usr/lib/python3.14/dist-packages/scitbx/graph/test_cases_tardy_pdb.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_rigidity.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_tardy_tree.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_utils.py usr/lib/python3.14/dist-packages/scitbx/graph/utils.py usr/lib/python3.14/dist-packages/scitbx/graphics_utils/ usr/lib/python3.14/dist-packages/scitbx/graphics_utils/__init__.py usr/lib/python3.14/dist-packages/scitbx/graphics_utils/tst.py usr/lib/python3.14/dist-packages/scitbx/iso_surface/ usr/lib/python3.14/dist-packages/scitbx/iso_surface/__init__.py usr/lib/python3.14/dist-packages/scitbx/iso_surface/tst_iso_surface.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/ usr/lib/python3.14/dist-packages/scitbx/lbfgs/__init__.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_curvatures.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_ext.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_mpi_split_evaluator.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/ usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/__init__.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/run.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/twisted_gaussian.py usr/lib/python3.14/dist-packages/scitbx/linalg/ usr/lib/python3.14/dist-packages/scitbx/linalg/__init__.py usr/lib/python3.14/dist-packages/scitbx/linalg/eigensystem.py usr/lib/python3.14/dist-packages/scitbx/linalg/ext.py usr/lib/python3.14/dist-packages/scitbx/linalg/householder.py usr/lib/python3.14/dist-packages/scitbx/linalg/svd.py usr/lib/python3.14/dist-packages/scitbx/linalg/boost_python/ usr/lib/python3.14/dist-packages/scitbx/linalg/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/ usr/lib/python3.14/dist-packages/scitbx/linalg/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_cholesky.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_eigensystem.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_matrix.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_svd.py usr/lib/python3.14/dist-packages/scitbx/line_search/ usr/lib/python3.14/dist-packages/scitbx/line_search/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/ usr/lib/python3.14/dist-packages/scitbx/lstbx/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/normal_eqns.py usr/lib/python3.14/dist-packages/scitbx/lstbx/normal_eqns_solving.py usr/lib/python3.14/dist-packages/scitbx/lstbx/benchmarks/ usr/lib/python3.14/dist-packages/scitbx/lstbx/benchmarks/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/boost_python/ usr/lib/python3.14/dist-packages/scitbx/lstbx/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/ usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/test_problems.py usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py usr/lib/python3.14/dist-packages/scitbx/math/ usr/lib/python3.14/dist-packages/scitbx/math/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/besselk.py usr/lib/python3.14/dist-packages/scitbx/math/breakpoint.py usr/lib/python3.14/dist-packages/scitbx/math/chebyshev_lsq_fit.py usr/lib/python3.14/dist-packages/scitbx/math/clustering.py usr/lib/python3.14/dist-packages/scitbx/math/cubic_spline.py usr/lib/python3.14/dist-packages/scitbx/math/curve_fitting.py usr/lib/python3.14/dist-packages/scitbx/math/des_3_100_13.py usr/lib/python3.14/dist-packages/scitbx/math/des_3_240_21.py usr/lib/python3.14/dist-packages/scitbx/math/distributions.py usr/lib/python3.14/dist-packages/scitbx/math/euler_angles.py usr/lib/python3.14/dist-packages/scitbx/math/ext.py usr/lib/python3.14/dist-packages/scitbx/math/farey.py usr/lib/python3.14/dist-packages/scitbx/math/fit_peak.py usr/lib/python3.14/dist-packages/scitbx/math/fit_quadratic_function.py usr/lib/python3.14/dist-packages/scitbx/math/fliege_mayer_400.py usr/lib/python3.14/dist-packages/scitbx/math/fliege_mayer_900.py usr/lib/python3.14/dist-packages/scitbx/math/fliege_mayer_900_ylm.py usr/lib/python3.14/dist-packages/scitbx/math/gaussian.py usr/lib/python3.14/dist-packages/scitbx/math/gaussian_fit.py usr/lib/python3.14/dist-packages/scitbx/math/gumbel.py usr/lib/python3.14/dist-packages/scitbx/math/incremental_SO3_sampling.py usr/lib/python3.14/dist-packages/scitbx/math/lefebvre.py usr/lib/python3.14/dist-packages/scitbx/math/minimum_covering_ellipsoid.py usr/lib/python3.14/dist-packages/scitbx/math/multiple_superposition.py usr/lib/python3.14/dist-packages/scitbx/math/periodogram.py usr/lib/python3.14/dist-packages/scitbx/math/scale_curves.py usr/lib/python3.14/dist-packages/scitbx/math/sieve_of_eratosthenes.py usr/lib/python3.14/dist-packages/scitbx/math/so3_lie_algebra.py usr/lib/python3.14/dist-packages/scitbx/math/spe.py usr/lib/python3.14/dist-packages/scitbx/math/sphere_sphere_intersection.py usr/lib/python3.14/dist-packages/scitbx/math/superpose.py usr/lib/python3.14/dist-packages/scitbx/math/tst_2d_zernike.py usr/lib/python3.14/dist-packages/scitbx/math/tst_bessel_zeros.py usr/lib/python3.14/dist-packages/scitbx/math/tst_multivariate_moments.py usr/lib/python3.14/dist-packages/scitbx/math/tst_so3_lie_algebra.py usr/lib/python3.14/dist-packages/scitbx/math/tst_undirected_graph.py usr/lib/python3.14/dist-packages/scitbx/math/tst_zernike.py usr/lib/python3.14/dist-packages/scitbx/math/tst_zernike_mom.py usr/lib/python3.14/dist-packages/scitbx/math/undirected_graph.py usr/lib/python3.14/dist-packages/scitbx/math/zernike_align_fft.py usr/lib/python3.14/dist-packages/scitbx/math/boost_python/ usr/lib/python3.14/dist-packages/scitbx/math/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/dev/ usr/lib/python3.14/dist-packages/scitbx/math/dev/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/erf/ usr/lib/python3.14/dist-packages/scitbx/math/erf/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/tests/ usr/lib/python3.14/dist-packages/scitbx/math/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_angle_derivative.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_bessel.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_clustering.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_cubic_equation.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_curve_fitting.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_dmatrix.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_euler_angles.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_exp_functions.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_fit_peak.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_g_function.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_gaussian.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_gcd.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_halton.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_line_search.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_math.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_periodogram.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_quadrature.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_r3_rotation.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_resample.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_similarity_indices.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_superpose.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_tetrahedron.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_weighted_correlation.py usr/lib/python3.14/dist-packages/scitbx/matrix/ usr/lib/python3.14/dist-packages/scitbx/matrix/__init__.py usr/lib/python3.14/dist-packages/scitbx/matrix/row_echelon.py usr/lib/python3.14/dist-packages/scitbx/matrix/tests/ usr/lib/python3.14/dist-packages/scitbx/matrix/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/matrix/tests/tst_householder.py usr/lib/python3.14/dist-packages/scitbx/matrix/tests/tst_row_echelon.py usr/lib/python3.14/dist-packages/scitbx/misc/ usr/lib/python3.14/dist-packages/scitbx/misc/__init__.py usr/lib/python3.14/dist-packages/scitbx/python_utils/ usr/lib/python3.14/dist-packages/scitbx/python_utils/__init__.py usr/lib/python3.14/dist-packages/scitbx/python_utils/command_line.py usr/lib/python3.14/dist-packages/scitbx/python_utils/dicts.py usr/lib/python3.14/dist-packages/scitbx/python_utils/graph_tools.py usr/lib/python3.14/dist-packages/scitbx/python_utils/misc.py usr/lib/python3.14/dist-packages/scitbx/python_utils/random_transform.py usr/lib/python3.14/dist-packages/scitbx/python_utils/robust_statistics.py usr/lib/python3.14/dist-packages/scitbx/python_utils/signal_utils.py usr/lib/python3.14/dist-packages/scitbx/python_utils/tst_graph.py usr/lib/python3.14/dist-packages/scitbx/python_utils/tst_random_transform.py usr/lib/python3.14/dist-packages/scitbx/python_utils/tst_robust.py usr/lib/python3.14/dist-packages/scitbx/random/ usr/lib/python3.14/dist-packages/scitbx/random/__init__.py usr/lib/python3.14/dist-packages/scitbx/random/boost_python/ usr/lib/python3.14/dist-packages/scitbx/random/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/random/tests/ usr/lib/python3.14/dist-packages/scitbx/random/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/random/tests/tst_random.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/ usr/lib/python3.14/dist-packages/scitbx/rigid_body/__init__.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/tst.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/ usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/__init__.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/body_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/featherstone.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/make_bundles.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/spatial_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tardy.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tst_basic.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tst_tardy.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/wx_tardy.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/ usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/__init__.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/featherstone.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/test_simulation.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/test_utils.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_molecules.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_singular.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/utils.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/wx_free_motion.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/wx_joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/wx_molecules.py usr/lib/python3.14/dist-packages/scitbx/serialization/ usr/lib/python3.14/dist-packages/scitbx/serialization/__init__.py usr/lib/python3.14/dist-packages/scitbx/slatec/ usr/lib/python3.14/dist-packages/scitbx/slatec/__init__.py usr/lib/python3.14/dist-packages/scitbx/source_generators/ usr/lib/python3.14/dist-packages/scitbx/source_generators/__init__.py usr/lib/python3.14/dist-packages/scitbx/source_generators/flex_fwd_h.py usr/lib/python3.14/dist-packages/scitbx/source_generators/lbfgs_fem.py usr/lib/python3.14/dist-packages/scitbx/source_generators/utils.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/ usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/__init__.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_algebras.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_all.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_apply.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_operator_functors.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_operator_traits_builtin.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_reductions.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_std_imports.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/operator_functor_info.py usr/lib/python3.14/dist-packages/scitbx/sparse/ usr/lib/python3.14/dist-packages/scitbx/sparse/__init__.py usr/lib/python3.14/dist-packages/scitbx/sparse/boost_python/ usr/lib/python3.14/dist-packages/scitbx/sparse/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/sparse/tests/ usr/lib/python3.14/dist-packages/scitbx/sparse/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py usr/lib/python3.14/dist-packages/scitbx/sparse/tests/tst_sparse.py usr/lib/python3.14/dist-packages/scitbx/stdlib/ usr/lib/python3.14/dist-packages/scitbx/stdlib/__init__.py usr/lib/python3.14/dist-packages/scitbx/stl/ usr/lib/python3.14/dist-packages/scitbx/stl/__init__.py usr/lib/python3.14/dist-packages/scitbx/stl/map.py usr/lib/python3.14/dist-packages/scitbx/stl/set.py usr/lib/python3.14/dist-packages/scitbx/stl/tst_map.py usr/lib/python3.14/dist-packages/scitbx/stl/tst_set.py usr/lib/python3.14/dist-packages/scitbx/stl/tst_vector.py usr/lib/python3.14/dist-packages/scitbx/stl/vector.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/ usr/lib/python3.14/dist-packages/scitbx/suffixtree/__init__.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/single.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/boost_python/ usr/lib/python3.14/dist-packages/scitbx/suffixtree/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/test/ usr/lib/python3.14/dist-packages/scitbx/suffixtree/test/__init__.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/test/tst_single.py usr/lib/python3.14/dist-packages/scitbx/tests/ usr/lib/python3.14/dist-packages/scitbx/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/tests/differential_evolution.py usr/lib/python3.14/dist-packages/scitbx/tests/direct_search_simulated_annealing.py usr/lib/python3.14/dist-packages/scitbx/tests/golden_section_search.py usr/lib/python3.14/dist-packages/scitbx/tests/simplex.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_basic.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_cubicle_neighbors.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_genetic_algorithm_with_mp.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_minimizer_lbfgs_general.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_r3_utils.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_regular_grid_on_unit_sphere.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_smoothing.py usr/lib/python3.14/dist-packages/scitbx/wigner/ usr/lib/python3.14/dist-packages/scitbx/wigner/__init__.py usr/lib/python3.14/dist-packages/scitbx/wigner/tst_wigner3j.py usr/lib/python3.14/dist-packages/serialtbx/ usr/lib/python3.14/dist-packages/serialtbx/__init__.py usr/lib/python3.14/dist-packages/serialtbx/detector/ usr/lib/python3.14/dist-packages/serialtbx/detector/__init__.py usr/lib/python3.14/dist-packages/serialtbx/detector/cspad.py usr/lib/python3.14/dist-packages/serialtbx/detector/jungfrau.py usr/lib/python3.14/dist-packages/serialtbx/detector/rayonix.py usr/lib/python3.14/dist-packages/serialtbx/detector/xtc.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/ usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/__init__.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/cspad_detector.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/generic_detector.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/metrology.py usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/ usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/__init__.py usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/max_like.py usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/util.py usr/lib/python3.14/dist-packages/serialtbx/util/ usr/lib/python3.14/dist-packages/serialtbx/util/__init__.py usr/lib/python3.14/dist-packages/serialtbx/util/construct_frame.py usr/lib/python3.14/dist-packages/serialtbx/util/energy_scan_notch_finder.py usr/lib/python3.14/dist-packages/serialtbx/util/time.py usr/lib/python3.14/dist-packages/simtbx/ usr/lib/python3.14/dist-packages/simtbx/__init__.py usr/lib/python3.14/dist-packages/simtbx/run_tests.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/ usr/lib/python3.14/dist-packages/simtbx/diffBragg/__init__.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/attr_list.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/device.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/ensemble_refine_launcher.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/hopper_ensemble_utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/hopper_io.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/hopper_utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/mpi_logger.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/parameter_errors.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/phil.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/prep_stage2_input.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/psf.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/stage_two_utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/ usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/__init__.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/base_refiner.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/geometry.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/parameters.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/stage_two_refiner.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/ usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/__init__.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/manager.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py usr/lib/python3.14/dist-packages/simtbx/gpu/ usr/lib/python3.14/dist-packages/simtbx/gpu/__init__.py usr/lib/python3.14/dist-packages/simtbx/gpu/tst_exafel_api.py usr/lib/python3.14/dist-packages/simtbx/gpu/tst_gpu_multisource_background.py usr/lib/python3.14/dist-packages/simtbx/gpu/tst_shoeboxes.py usr/lib/python3.14/dist-packages/simtbx/kokkos/ usr/lib/python3.14/dist-packages/simtbx/kokkos/__init__.py usr/lib/python3.14/dist-packages/simtbx/kokkos/tst_kokkos_lib.py usr/lib/python3.14/dist-packages/simtbx/modeling/ usr/lib/python3.14/dist-packages/simtbx/modeling/FormatHDF5AttributeGeometry.py usr/lib/python3.14/dist-packages/simtbx/modeling/__init__.py usr/lib/python3.14/dist-packages/simtbx/modeling/forward_models.py usr/lib/python3.14/dist-packages/simtbx/modeling/predictions.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/ usr/lib/python3.14/dist-packages/simtbx/nanoBragg/__init__.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/anisotropic_mosaicity.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_beam.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_crystal.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_gui_dialogs.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_gui_frames.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_gui_init.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_input.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_threads.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/sim_data.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_anisotropic_mosaicity.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_gauss_argchk.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity2.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_multisource_background.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_basic.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_minimal.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_mosaic.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_multipanel.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_pilatus.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/utils.py usr/lib/python3.14/dist-packages/simtbx/pixel/ usr/lib/python3.14/dist-packages/simtbx/pixel/__init__.py usr/lib/python3.14/dist-packages/smtbx/ usr/lib/python3.14/dist-packages/smtbx/__init__.py usr/lib/python3.14/dist-packages/smtbx/development.py usr/lib/python3.14/dist-packages/smtbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/smtbx/run_tests.py usr/lib/python3.14/dist-packages/smtbx/utils.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/ usr/lib/python3.14/dist-packages/smtbx/ab_initio/__init__.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/charge_flipping.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/ usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/__init__.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py usr/lib/python3.14/dist-packages/smtbx/absolute_structure/ usr/lib/python3.14/dist-packages/smtbx/absolute_structure/__init__.py usr/lib/python3.14/dist-packages/smtbx/array_family/ usr/lib/python3.14/dist-packages/smtbx/array_family/__init__.py usr/lib/python3.14/dist-packages/smtbx/command_line/ usr/lib/python3.14/dist-packages/smtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/smtbx/command_line/absolute_structure.py usr/lib/python3.14/dist-packages/smtbx/command_line/anom_refine.py usr/lib/python3.14/dist-packages/smtbx/command_line/benchmark_refinement.py usr/lib/python3.14/dist-packages/smtbx/command_line/masks.py usr/lib/python3.14/dist-packages/smtbx/command_line/refine.py usr/lib/python3.14/dist-packages/smtbx/masks/ usr/lib/python3.14/dist-packages/smtbx/masks/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/ usr/lib/python3.14/dist-packages/smtbx/refinement/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/least_squares.py usr/lib/python3.14/dist-packages/smtbx/refinement/weighting_schemes.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/ usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/adp.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/all.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/fpfdp.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/occupancy.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/rigid.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/site.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/ usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/all.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/hydrogens.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/ usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/ usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/adp_restraints.py usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/origin_fixing_restraints.py usr/lib/python3.14/dist-packages/smtbx/regression/ usr/lib/python3.14/dist-packages/smtbx/regression/__init__.py usr/lib/python3.14/dist-packages/smtbx/regression/tst_commandline_anomrefine.py usr/lib/python3.14/dist-packages/smtbx/regression/tst_commandline_refine.py usr/lib/python3.14/dist-packages/smtbx/regression/test_data/ usr/lib/python3.14/dist-packages/smtbx/regression/test_data/__init__.py usr/lib/python3.14/dist-packages/smtbx/source_generators/ usr/lib/python3.14/dist-packages/smtbx/source_generators/__init__.py usr/lib/python3.14/dist-packages/smtbx/source_generators/flex_fwd_h.py usr/lib/python3.14/dist-packages/smtbx/stl/ usr/lib/python3.14/dist-packages/smtbx/stl/__init__.py usr/lib/python3.14/dist-packages/smtbx/stl/map.py usr/lib/python3.14/dist-packages/smtbx/structure_factors/ usr/lib/python3.14/dist-packages/smtbx/structure_factors/__init__.py usr/lib/python3.14/dist-packages/smtbx/structure_factors/direct/ usr/lib/python3.14/dist-packages/smtbx/structure_factors/direct/__init__.py usr/lib/python3.14/dist-packages/spotfinder/ usr/lib/python3.14/dist-packages/spotfinder/__init__.py usr/lib/python3.14/dist-packages/spotfinder/exception.py usr/lib/python3.14/dist-packages/spotfinder/run_tests.py usr/lib/python3.14/dist-packages/spotfinder/applications/ usr/lib/python3.14/dist-packages/spotfinder/applications/__init__.py usr/lib/python3.14/dist-packages/spotfinder/applications/image_viewer.py usr/lib/python3.14/dist-packages/spotfinder/applications/practical_heuristics.py usr/lib/python3.14/dist-packages/spotfinder/applications/signal_strength.py usr/lib/python3.14/dist-packages/spotfinder/applications/stats_distl.py usr/lib/python3.14/dist-packages/spotfinder/applications/wrappers.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/ usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/__init__.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/ice2.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/ice_nztt.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/method2_resolution.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/spotreporter.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/ usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/__init__.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/correction_vector_plot.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/cxi_phil.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/cxi_run3.py usr/lib/python3.14/dist-packages/spotfinder/array_family/ usr/lib/python3.14/dist-packages/spotfinder/array_family/__init__.py usr/lib/python3.14/dist-packages/spotfinder/array_family/flex.py usr/lib/python3.14/dist-packages/spotfinder/command_line/ usr/lib/python3.14/dist-packages/spotfinder/command_line/__init__.py usr/lib/python3.14/dist-packages/spotfinder/command_line/find_active_area.py usr/lib/python3.14/dist-packages/spotfinder/command_line/image_viewer.py usr/lib/python3.14/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py usr/lib/python3.14/dist-packages/spotfinder/command_line/signal_strength.py usr/lib/python3.14/dist-packages/spotfinder/command_line/sweep_strength.py usr/lib/python3.14/dist-packages/spotfinder/command_line/thin_client.py usr/lib/python3.14/dist-packages/spotfinder/core_toolbox/ usr/lib/python3.14/dist-packages/spotfinder/core_toolbox/__init__.py usr/lib/python3.14/dist-packages/spotfinder/core_toolbox/close_spots_detail.py usr/lib/python3.14/dist-packages/spotfinder/diffraction/ usr/lib/python3.14/dist-packages/spotfinder/diffraction/__init__.py usr/lib/python3.14/dist-packages/spotfinder/diffraction/geometry.py usr/lib/python3.14/dist-packages/spotfinder/diffraction/imagefiles.py usr/lib/python3.14/dist-packages/spotfinder/dxtbx_toolbox/ usr/lib/python3.14/dist-packages/spotfinder/dxtbx_toolbox/__init__.py usr/lib/python3.14/dist-packages/spotfinder/dxtbx_toolbox/practical_heuristics.py usr/lib/python3.14/dist-packages/spotfinder/math_support/ usr/lib/python3.14/dist-packages/spotfinder/math_support/__init__.py usr/lib/python3.14/dist-packages/spotfinder/math_support/sphere_formulae.py usr/lib/python3.14/dist-packages/spotfinder/servers/ usr/lib/python3.14/dist-packages/spotfinder/servers/__init__.py usr/lib/python3.14/dist-packages/spotfinder/servers/adsc_client.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache_bcsb.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache_dials.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache_utils.py usr/lib/python3.14/dist-packages/spotfinder/servers/bcsb_client_example.py usr/lib/python3.14/dist-packages/spotfinder/servers/general_client_example.py usr/lib/python3.14/dist-packages/spotfinder/servers/mp_spotfinder_server_is_alive.py usr/lib/python3.14/dist-packages/spotfinder/servers/mp_spotfinder_server_read_file.py usr/lib/python3.14/dist-packages/spotfinder/servers/multipart_encoder.py usr/lib/python3.14/dist-packages/spotfinder/servers/pilatus_client.py usr/lib/python3.14/dist-packages/spotfinder/servers/specific_client_example.py usr/lib/python3.14/dist-packages/spotfinder/servers/spotfinder_server_client_push.py usr/lib/python3.14/dist-packages/spotfinder/servers/spotfinder_server_read_file.py usr/lib/python3.14/dist-packages/spotfinder/servers/thin_client.py usr/lib/python3.14/dist-packages/wxtbx/ usr/lib/python3.14/dist-packages/wxtbx/__init__.py usr/lib/python3.14/dist-packages/wxtbx/adp_statistics.py usr/lib/python3.14/dist-packages/wxtbx/anomalous_scattering.py usr/lib/python3.14/dist-packages/wxtbx/app.py usr/lib/python3.14/dist-packages/wxtbx/b_plot.py usr/lib/python3.14/dist-packages/wxtbx/bitmaps.py usr/lib/python3.14/dist-packages/wxtbx/browser.py usr/lib/python3.14/dist-packages/wxtbx/checklistctrl.py usr/lib/python3.14/dist-packages/wxtbx/custom_restraints.py usr/lib/python3.14/dist-packages/wxtbx/ensemble_validation.py usr/lib/python3.14/dist-packages/wxtbx/errors.py usr/lib/python3.14/dist-packages/wxtbx/heavy_atoms.py usr/lib/python3.14/dist-packages/wxtbx/icons.py usr/lib/python3.14/dist-packages/wxtbx/info_panels.py usr/lib/python3.14/dist-packages/wxtbx/layout.py usr/lib/python3.14/dist-packages/wxtbx/listeditor.py usr/lib/python3.14/dist-packages/wxtbx/metallicbutton.py usr/lib/python3.14/dist-packages/wxtbx/misc_dialogs.py usr/lib/python3.14/dist-packages/wxtbx/monitor.py usr/lib/python3.14/dist-packages/wxtbx/mtz_dump.py usr/lib/python3.14/dist-packages/wxtbx/path_dialogs.py usr/lib/python3.14/dist-packages/wxtbx/pdb_editor.py usr/lib/python3.14/dist-packages/wxtbx/polygon.py usr/lib/python3.14/dist-packages/wxtbx/polygon_db_viewer.py usr/lib/python3.14/dist-packages/wxtbx/process_control.py usr/lib/python3.14/dist-packages/wxtbx/qstat_view.py usr/lib/python3.14/dist-packages/wxtbx/run_tests.py usr/lib/python3.14/dist-packages/wxtbx/segmentedctrl.py usr/lib/python3.14/dist-packages/wxtbx/sequence_view.py usr/lib/python3.14/dist-packages/wxtbx/symmetry_dialog.py usr/lib/python3.14/dist-packages/wxtbx/tables.py usr/lib/python3.14/dist-packages/wxtbx/utils.py usr/lib/python3.14/dist-packages/wxtbx/windows.py usr/lib/python3.14/dist-packages/wxtbx/xtriage.py usr/lib/python3.14/dist-packages/wxtbx/command_line/ usr/lib/python3.14/dist-packages/wxtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py usr/lib/python3.14/dist-packages/wxtbx/command_line/b_plot.py usr/lib/python3.14/dist-packages/wxtbx/command_line/inspect_r_free_flags.py usr/lib/python3.14/dist-packages/wxtbx/command_line/loggraph.py usr/lib/python3.14/dist-packages/wxtbx/command_line/pdb_editor.py usr/lib/python3.14/dist-packages/wxtbx/command_line/pdb_statistics.py usr/lib/python3.14/dist-packages/wxtbx/command_line/plan_sad_experiment.py usr/lib/python3.14/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py usr/lib/python3.14/dist-packages/wxtbx/command_line/show_file_info.py usr/lib/python3.14/dist-packages/wxtbx/command_line/wxpython.py usr/lib/python3.14/dist-packages/wxtbx/command_line/xtriage.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/ usr/lib/python3.14/dist-packages/wxtbx/phil_controls/__init__.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/array_label.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/boolctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/choice.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/choice_multi.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/floatctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/floats.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/intctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/ints.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/misc_ctrls.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/numbers.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/path.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/simple_dialogs.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/space_group.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/strctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/strings.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/symop.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/text_base.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/tree.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/tribool.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/unit_cell.py usr/lib/python3.14/dist-packages/wxtbx/plots/ usr/lib/python3.14/dist-packages/wxtbx/plots/__init__.py usr/lib/python3.14/dist-packages/wxtbx/plots/emringer.py usr/lib/python3.14/dist-packages/wxtbx/plots/molprobity.py usr/lib/python3.14/dist-packages/wxtbx/regression/ usr/lib/python3.14/dist-packages/wxtbx/regression/__init__.py usr/lib/python3.14/dist-packages/wxtbx/regression/_headless_construct_cases.py usr/lib/python3.14/dist-packages/wxtbx/regression/_warnings.py usr/lib/python3.14/dist-packages/wxtbx/regression/tst_b_plot.py usr/lib/python3.14/dist-packages/wxtbx/regression/tst_headless_construct.py usr/lib/python3.14/dist-packages/wxtbx/regression/tst_imports.py usr/lib/python3.14/dist-packages/wxtbx/regression/tst_process_control.py usr/lib/python3.14/dist-packages/wxtbx/reports/ usr/lib/python3.14/dist-packages/wxtbx/reports/__init__.py usr/lib/python3.14/dist-packages/wxtbx/reports/blast.py usr/lib/python3.14/dist-packages/wxtbx/reports/pdb_symmetry.py usr/lib/python3.14/dist-packages/xcif/ usr/lib/python3.14/dist-packages/xcif/__init__.py usr/lib/python3.14/dist-packages/xcif/run_tests.py usr/lib/python3.14/dist-packages/xcif/benchmarks/ usr/lib/python3.14/dist-packages/xcif/benchmarks/__init__.py usr/lib/python3.14/dist-packages/xcif/benchmarks/run_benchmarks.py usr/lib/python3.14/dist-packages/xcif/regression/ usr/lib/python3.14/dist-packages/xcif/regression/__init__.py usr/lib/python3.14/dist-packages/xcif/regression/tst_api_compat.py usr/lib/python3.14/dist-packages/xcif/regression/tst_bindings.py usr/lib/python3.14/dist-packages/xcif/regression/tst_example_parse.py usr/lib/python3.14/dist-packages/xcif/regression/tst_example_tokenize.py usr/lib/python3.14/dist-packages/xcif/regression/tst_gil_release.py usr/lib/python3.14/dist-packages/xcif/regression/tst_iotbx_cif_reader_engine.py usr/lib/python3.14/dist-packages/xcif/regression/tst_iotbx_cif_reader_parity.py usr/lib/python3.14/dist-packages/xcif/regression/tst_memory.py usr/lib/python3.14/dist-packages/xcif/regression/tst_non_strict_mode.py usr/lib/python3.14/dist-packages/xcif/regression/tst_parse_verify.py usr/lib/python3.14/dist-packages/xcif/regression/tst_pdb_coordinates.py usr/lib/python3.14/dist-packages/xcif/regression/tst_pdb_sf.py usr/lib/python3.14/dist-packages/xcif/regression/tst_quoted_string_delimiter.py usr/lib/python3.14/dist-packages/xcif/regression/tst_roundtrip.py usr/lib/python3.14/dist-packages/xcif/regression/tst_semicolon_field_strict.py usr/lib/python3.14/dist-packages/xcif/regression/tst_string_interning.py usr/lib/python3.14/dist-packages/xcif/regression/tst_utf8.py sent 1,118,051,727 bytes received 78,123 bytes 745,419,900.00 bytes/sec total size is 1,117,485,427 speedup is 1.00 dh_auto_build -- --name cctbx -s custom --build-args="debian/install-cctbx.sh -- --destdir=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp --pyver={version} --srcdir=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 --builddir={build_dir}_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif'" pybuild --build -i python{version} -p 3.14 --name cctbx -s custom --build-args="debian/install-cctbx.sh -- --destdir=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp --pyver={version} --srcdir=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 --builddir={build_dir}_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif'" --parallel=6 I: pybuild base:385: debian/install-cctbx.sh -- --destdir=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp --pyver=3.14 --srcdir=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 --builddir='/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build'_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif' debian/install-cctbx.sh: line 7: 0: command not found --destdir '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp' --pyver '3.14' --srcdir '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' --builddir '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_' --modules 'annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif' -- Installing CCTBX into a FHS system Modules: annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif From the source /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 and build /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_ To the FHS : destdir /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp pyver 3.14 bindir /usr/bin incdir /usr/include pkglibdir /usr/lib/cctbx/python3.14 libdir /usr/lib/x86_64-linux-gnu pythondir /usr/lib/python3.14/dist-packages with PYTHONPATH /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build Copying libtbx_env from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_ to /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14 {'_dispatcher_include_at_start': [], '_dispatcher_include_before_command': [], '_dispatcher_precall_commands': None, '_dispatcher_registry': {relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/annlib.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/bin/python3.14"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/annlib.show_build_path"): 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relocatable="bin/smtbx.absolute_structure"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../smtbx/command_line/absolute_structure.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/smtbx.anom_refine"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../smtbx/command_line/anom_refine.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/smtbx.benchmark_refinement"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../smtbx/command_line/benchmark_refinement.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/smtbx.masks"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../smtbx/command_line/masks.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/smtbx.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/bin/python3.14"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/smtbx.refine"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../smtbx/command_line/refine.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/smtbx.show_build_path"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/smtbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/sphinx.build"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/sphinx_build.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/spotfinder.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/bin/python3.14"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/spotfinder.show_build_path"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/spotfinder.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.anomalous_differences_histogram"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../wxtbx/command_line/anomalous_differences_histogram.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.inspect_r_free_flags"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../wxtbx/command_line/inspect_r_free_flags.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.plan_sad_experiment"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../wxtbx/command_line/plan_sad_experiment.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/bin/python3.14"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.show_build_path"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.show_file_info"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../wxtbx/command_line/show_file_info.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.xtriage"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../wxtbx/command_line/xtriage.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/xcif.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/bin/python3.14"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/xcif.show_build_path"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/xcif.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py")}, 'bin_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin"), 'boost_version': 109200, 'build_options': , 'build_path': absolute_path("/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14"), 'command_line_redirections': {}, 'command_version_suffix': None, 'dispatcher_name': None, 'exe_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="exe"), 'explicitly_requested_modules': {'annlib', 'annlib_adaptbx', 'boost_adaptbx', 'cbflib_adaptbx', 'ccp4io', 'ccp4io_adaptbx', 'cctbx', 'cma_es', 'crys3d', 'dxtbx', 'fable', 'gltbx', 'iotbx', 'libtbx', 'mmtbx', 'omptbx', 'rstbx', 'scitbx', 'serialtbx', 'smtbx', 'spotfinder', 'tbxx', 'wxtbx', 'xcif'}, 'full_testing': False, 'include_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="include"), 'installed': False, 'installed_modules': [], 'installed_order': [], 'lib_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="lib"), 'missing_for_build': {'boost'}, 'missing_for_use': set(), 'missing_optional': {'docutils', 'reduce', 'king', 'boost', 'probe', 'cbflib'}, 'module_dict': {'annlib': , 'boost': , 'cbflib': , 'ccp4io': , 'cctbx': , 'chiltbx': , 'cma_es': , 'crys3d': , 'dxtbx': , 'fable': , 'gltbx': , 'iotbx': , 'libtbx': , 'mmtbx': , 'omptbx': , 'rstbx': , 'scitbx': , 'serialtbx': , 'smtbx': , 'spotfinder': , 'tbxx': , 'ucif': , 'wxtbx': , 'xcif': }, 'module_dist_paths': {'annlib': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../annlib"), 'annlib_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../annlib_adaptbx"), 'boost_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../boost_adaptbx"), 'cbflib_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../cbflib_adaptbx"), 'ccp4io': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../ccp4io"), 'ccp4io_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../ccp4io_adaptbx"), 'cctbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../cctbx"), 'chiltbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../chiltbx"), 'cma_es': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../cma_es"), 'crys3d': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../crys3d"), 'dxtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../dxtbx"), 'fable': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../fable"), 'gltbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../gltbx"), 'iotbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../iotbx"), 'libtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx"), 'mmtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../mmtbx"), 'omptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../omptbx"), 'rstbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../rstbx"), 'scitbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../scitbx"), 'serialtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../serialtbx"), 'smtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../smtbx"), 'spotfinder': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../spotfinder"), 'tbxx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../tbxx"), 'ucif': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../ucif"), 'wxtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../wxtbx"), 'xcif': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../xcif")}, 'module_list': [, , , , , , , , , , , , , , , , , , , , , , , ], 'no_bin_python': False, 'path_utility': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/path_utility.py"), 'python_exe': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/bin/python3.14"), 'python_version_major_minor': (3, 14), 'pythonpath': [relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../.."), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../dxtbx/src"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../boost_adaptbx"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="lib"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/lib/python3.14/dist-packages"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/lib/python3/dist-packages"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/local/lib/python3.14/dist-packages")], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../..")], 'scons_dist_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr")} Saved 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'module_list': [, , , , , , , , , , , , , , , , , , , , , , , ], 'no_bin_python': True, 'path_utility': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/path_utility.py"), 'python_exe': relocatable_path(anchor="/usr", relocatable="bin/python3.14"), 'python_version_major_minor': (3, 14), 'pythonpath': [], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages")], 'scons_dist_path': relocatable_path(anchor="/usr", relocatable=".")} building file list ... done ./ boost_adaptbx/ boost_adaptbx/tests/ boost_adaptbx/tests/tst_optional_copy iotbx/ iotbx/pdb/ iotbx/pdb/hybrid_36_fem scitbx/ scitbx/array_family/ scitbx/array_family/tst_accessors scitbx/array_family/tst_af_1 scitbx/array_family/tst_af_2 scitbx/array_family/tst_af_3 scitbx/array_family/tst_af_4 scitbx/array_family/tst_af_5 scitbx/array_family/tst_mat3 scitbx/array_family/tst_optional_copy scitbx/array_family/tst_rectangular_full_packed scitbx/array_family/tst_ref_matrix_facet scitbx/array_family/tst_sym_mat3 scitbx/array_family/tst_unsigned_float_arithmetic scitbx/array_family/tst_vec3 scitbx/error/ scitbx/error/tst_error scitbx/lbfgs/ scitbx/lbfgs/tst_lbfgs scitbx/math/ scitbx/math/tests/ scitbx/math/tests/tst scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky scitbx/matrix/tests/tst_givens scitbx/matrix/tests/tst_householder scitbx/matrix/tests/tst_svd scitbx/serialization/ scitbx/serialization/tst_base_256 smtbx/ smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_geometrical_hydrogens smtbx/refinement/constraints/tests/tst_reparametrisation smtbx/refinement/constraints/tests/tst_special_position sent 15,495,564 bytes received 568 bytes 30,992,264.00 bytes/sec total size is 15,483,944 speedup is 1.00 building file list ... done ./ libann_adaptor.so -> libann_adaptor.so.0.0.1 libann_adaptor.so.0 -> libann_adaptor.so.0.0.1 libann_adaptor.so.0.0.1 libasymmetric_map.so -> libasymmetric_map.so.0.0.1 libasymmetric_map.so.0 -> libasymmetric_map.so.0.0.1 libasymmetric_map.so.0.0.1 libcbf-private.so -> libcbf-private.so.0.0.1 libcbf-private.so.0 -> libcbf-private.so.0.0.1 libcbf-private.so.0.0.1 libccp4io.so -> libccp4io.so.0.0.1 libccp4io.so.0 -> libccp4io.so.0.0.1 libccp4io.so.0.0.1 libcctbx.so -> libcctbx.so.0.0.1 libcctbx.so.0 -> libcctbx.so.0.0.1 libcctbx.so.0.0.1 libcctbx_sgtbx_asu.so -> libcctbx_sgtbx_asu.so.0.0.1 libcctbx_sgtbx_asu.so.0 -> libcctbx_sgtbx_asu.so.0.0.1 libcctbx_sgtbx_asu.so.0.0.1 libdxtbxspotfinder.so -> libdxtbxspotfinder.so.0.0.1 libdxtbxspotfinder.so.0 -> libdxtbxspotfinder.so.0.0.1 libdxtbxspotfinder.so.0.0.1 libiotbx_mtz.so -> libiotbx_mtz.so.0.0.1 libiotbx_mtz.so.0 -> libiotbx_mtz.so.0.0.1 libiotbx_mtz.so.0.0.1 libiotbx_pdb.so -> libiotbx_pdb.so.0.0.1 libiotbx_pdb.so.0 -> libiotbx_pdb.so.0.0.1 libiotbx_pdb.so.0.0.1 libiotbx_xplor.so -> libiotbx_xplor.so.0.0.1 libiotbx_xplor.so.0 -> libiotbx_xplor.so.0.0.1 libiotbx_xplor.so.0.0.1 libmmtbx_masks.so -> libmmtbx_masks.so.0.0.1 libmmtbx_masks.so.0 -> libmmtbx_masks.so.0.0.1 libmmtbx_masks.so.0.0.1 libmmtbx_tls.so -> libmmtbx_tls.so.0.0.1 libmmtbx_tls.so.0 -> libmmtbx_tls.so.0.0.1 libmmtbx_tls.so.0.0.1 libomptbx.so -> libomptbx.so.0.0.1 libomptbx.so.0 -> libomptbx.so.0.0.1 libomptbx.so.0.0.1 librstbx.so -> librstbx.so.0.0.1 librstbx.so.0 -> librstbx.so.0.0.1 librstbx.so.0.0.1 libscitbx_boost_python.so -> libscitbx_boost_python.so.0.0.1 libscitbx_boost_python.so.0 -> libscitbx_boost_python.so.0.0.1 libscitbx_boost_python.so.0.0.1 libscitbx_minpack.so -> libscitbx_minpack.so.0.0.1 libscitbx_minpack.so.0 -> libscitbx_minpack.so.0.0.1 libscitbx_minpack.so.0.0.1 libscitbx_slatec.so -> libscitbx_slatec.so.0.0.1 libscitbx_slatec.so.0 -> libscitbx_slatec.so.0.0.1 libscitbx_slatec.so.0.0.1 libsmtbx_refinement_constraints.so -> libsmtbx_refinement_constraints.so.0.0.1 libsmtbx_refinement_constraints.so.0 -> libsmtbx_refinement_constraints.so.0.0.1 libsmtbx_refinement_constraints.so.0.0.1 libspotfinder.so -> libspotfinder.so.0.0.1 libspotfinder.so.0 -> libspotfinder.so.0.0.1 libspotfinder.so.0.0.1 libxcif.so -> libxcif.so.0.0.1 libxcif.so.0 -> libxcif.so.0.0.1 libxcif.so.0.0.1 sent 55,326,092 bytes received 519 bytes 110,653,222.00 bytes/sec total size is 55,309,514 speedup is 1.00 building file list ... done annlib_adaptbx/ annlib_adaptbx/ann_adaptor.h sent 2,232 bytes received 38 bytes 4,540.00 bytes/sec total size is 2,068 speedup is 0.91 building file list ... done boost_adaptbx/ boost_adaptbx/boost_range_python.hpp boost_adaptbx/convertible.h boost_adaptbx/exporting.hpp boost_adaptbx/floating_point_exceptions.h boost_adaptbx/hash.h boost_adaptbx/iterator_range.h boost_adaptbx/optional_conversions.h boost_adaptbx/precompiled.h boost_adaptbx/python_streambuf.h boost_adaptbx/std_pair_conversion.h boost_adaptbx/std_pair_fwd.h boost_adaptbx/swig_arg.hpp boost_adaptbx/tuple_conversion.h boost_adaptbx/graph/ boost_adaptbx/graph/graph_export_adaptor.hpp boost_adaptbx/graph/graph_type.hpp boost_adaptbx/graph/maximum_clique_greedy.hpp boost_adaptbx/graph/maximum_clique_rascal.hpp boost_adaptbx/graph/vertex_map.hpp boost_adaptbx/tests/ boost_adaptbx/tests/tst_optional_copy.h sent 73,908 bytes received 386 bytes 148,588.00 bytes/sec total size is 72,301 speedup is 0.97 building file list ... done cbflib_adaptbx/ cbflib_adaptbx/detectors/ cbflib_adaptbx/detectors/basic.h cbflib_adaptbx/detectors/buffer_based_service.h cbflib_adaptbx/detectors/cbf_adaptor.h cbflib_adaptbx/detectors/cbf_byte_offset_optimized.h cbflib_adaptbx/detectors/mar_adaptor.h cbflib_adaptbx/detectors/boost_python/ cbflib_adaptbx/detectors/boost_python/cbf_binary_adaptor.h cbflib_adaptbx/detectors/boost_python/general_cbf_write.h sent 22,295 bytes received 158 bytes 44,906.00 bytes/sec total size is 21,627 speedup is 0.96 building file list ... done ccp4io_adaptbx/ ccp4io_adaptbx/ccp4_ccplib_fem.hpp ccp4io_adaptbx/ccp4_diskio_fem.hpp ccp4io_adaptbx/ccp4_fftlib_fem.hpp ccp4io_adaptbx/ccp4_library_fem.hpp ccp4io_adaptbx/ccp4_maplib_fem.hpp ccp4io_adaptbx/ccp4_mtzlib_fem.hpp ccp4io_adaptbx/ccp4_other_fem.hpp ccp4io_adaptbx/ccp4_parser_f.h ccp4io_adaptbx/ccp4_parser_fem.hpp ccp4io_adaptbx/ccp4_symlib_fem.hpp ccp4io_adaptbx/cmaplib_f.h ccp4io_adaptbx/cmtzlib_f.h ccp4io_adaptbx/csymlib_f.h ccp4io_adaptbx/library_f.h ccp4io_adaptbx/printf_wrappers.h ccp4io_adaptbx/dev/ ccp4io_adaptbx/dev/fftlib.hpp sent 87,980 bytes received 326 bytes 176,612.00 bytes/sec total size is 86,686 speedup is 0.98 building file list ... done cctbx/ cctbx/adptbx.h cctbx/anharmonic.h cctbx/coordinates.h cctbx/crystal_orientation.h cctbx/cumulative_intensity_distribution.h cctbx/error.h cctbx/french_wilson.h cctbx/hendrickson_lattman.h cctbx/import_scitbx_af.h cctbx/miller.h cctbx/restraints.h cctbx/tagged_value.h cctbx/uctbx.h cctbx/adp_restraints/ cctbx/adp_restraints/adp_restraints.h cctbx/adp_restraints/adp_similarity.h cctbx/adp_restraints/aniso_restraints.h cctbx/adp_restraints/fixed_u_eq_adp.h cctbx/adp_restraints/isotropic_adp.h cctbx/adp_restraints/rigid_bond.h cctbx/adp_restraints/rigu.h cctbx/adptbx/ cctbx/adptbx/hirshfeld.h cctbx/covariance/ cctbx/covariance/covariance.h cctbx/crystal/ cctbx/crystal/asu_clusters.h cctbx/crystal/close_packing.h cctbx/crystal/coordination_sequences.h cctbx/crystal/direct_space_asu.h cctbx/crystal/incremental_pairs.h cctbx/crystal/namespace.h cctbx/crystal/neighbors_fast.h cctbx/crystal/neighbors_simple.h cctbx/crystal/pair_tables.h cctbx/crystal/site_cluster_analysis.h cctbx/crystal/symmetry.h cctbx/crystal/workarounds_bpl.h cctbx/dmtbx/ cctbx/dmtbx/triplet_generator.h cctbx/dmtbx/triplet_phase_relation.h cctbx/eltbx/ cctbx/eltbx/attenuation_coefficient.h cctbx/eltbx/basic.h cctbx/eltbx/chemical_elements.h cctbx/eltbx/covalent_radii.h cctbx/eltbx/electron_scattering.h cctbx/eltbx/fp_fdp.h cctbx/eltbx/henke.h cctbx/eltbx/icsd_radii.h cctbx/eltbx/neutron.h cctbx/eltbx/sasaki.h cctbx/eltbx/tiny_pse.h cctbx/eltbx/wavelengths.h cctbx/eltbx/xray_scattering.h cctbx/eltbx/xray_scattering/ cctbx/eltbx/xray_scattering/form_factor.h cctbx/eltbx/xray_scattering/gaussian.h cctbx/eltbx/xray_scattering/n_gaussian.h cctbx/eltbx/xray_scattering/n_gaussian_raw.h cctbx/examples/ cctbx/examples/merging/ cctbx/examples/merging/postrefine_base.h cctbx/examples/merging/xscale_prototype_core.h cctbx/geometry/ cctbx/geometry/geometry.h cctbx/geometry_restraints/ cctbx/geometry_restraints/angle.h cctbx/geometry_restraints/asu_cache.h cctbx/geometry_restraints/bond.h cctbx/geometry_restraints/bond_misc.h cctbx/geometry_restraints/bond_similarity.h cctbx/geometry_restraints/bond_sorted.h cctbx/geometry_restraints/chirality.h cctbx/geometry_restraints/dihedral.h cctbx/geometry_restraints/motif.h cctbx/geometry_restraints/namespace.h cctbx/geometry_restraints/nonbonded.h cctbx/geometry_restraints/nonbonded_sorted.h cctbx/geometry_restraints/parallelity.h cctbx/geometry_restraints/planarity.h cctbx/geometry_restraints/proxy_select.h cctbx/geometry_restraints/shared_wrapper_pickle.hpp cctbx/geometry_restraints/sorted_asu_proxies.h cctbx/geometry_restraints/utils.h cctbx/maptbx/ cctbx/maptbx/asymmetric_map.h cctbx/maptbx/average_densities.h cctbx/maptbx/connectivity.h cctbx/maptbx/coordinate_transformers.h cctbx/maptbx/copy.h cctbx/maptbx/fft.h cctbx/maptbx/fsc.h cctbx/maptbx/ft_analytical_1d_point_scatterer_at_origin.h cctbx/maptbx/grid_indices_around_sites.h cctbx/maptbx/grid_tags.h cctbx/maptbx/gridding.h cctbx/maptbx/histogram.h cctbx/maptbx/interpolation.h cctbx/maptbx/loft.h cctbx/maptbx/map_accumulator.h cctbx/maptbx/marked_grid_points.h cctbx/maptbx/mask.h cctbx/maptbx/mask_utils.h cctbx/maptbx/namespace.h cctbx/maptbx/peak_search.h cctbx/maptbx/resolution.h cctbx/maptbx/skeletons.h cctbx/maptbx/sphericity.h cctbx/maptbx/standard_deviations_around_sites.hpp cctbx/maptbx/statistics.h cctbx/maptbx/structure_factors.h cctbx/maptbx/target_and_gradients.h cctbx/maptbx/utils.h cctbx/maptbx/accessors/ cctbx/maptbx/accessors/c_grid_p1.h cctbx/maptbx/accessors/c_grid_padded_p1.h cctbx/maptbx/bcr/ cctbx/maptbx/bcr/bcr.h cctbx/maptbx/bcr/vrm.h cctbx/masks/ cctbx/masks/around_atoms.h cctbx/masks/flood_fill.h cctbx/math/ cctbx/math/array_utils.h cctbx/math/cos_sin_table.h cctbx/math/loop_n_from_m.h cctbx/math/mod.h cctbx/miller/ cctbx/miller/amplitude_normalisation.h cctbx/miller/asu.h cctbx/miller/bins.h cctbx/miller/change_basis.h cctbx/miller/expand_to_p1.h cctbx/miller/f_calc_map.h cctbx/miller/index_generator.h cctbx/miller/index_span.h cctbx/miller/lookup_utils.h cctbx/miller/match.h cctbx/miller/match_bijvoet_mates.h cctbx/miller/match_indices.h cctbx/miller/match_multi_indices.h cctbx/miller/math.h cctbx/miller/merge_equivalents.h cctbx/miller/phase_integrator.h cctbx/miller/phase_transfer.h cctbx/miller/randomize_amplitude_and_phase.h cctbx/miller/slices.h cctbx/miller/sym_equiv.h cctbx/miller/union_of_indices.h cctbx/multipolar/ cctbx/multipolar/aspherical.h cctbx/sgtbx/ cctbx/sgtbx/basic.h cctbx/sgtbx/brick.h cctbx/sgtbx/change_of_basis_op.h cctbx/sgtbx/find_affine.h cctbx/sgtbx/group_codes.h cctbx/sgtbx/lattice_symmetry.h cctbx/sgtbx/lattice_tr.h cctbx/sgtbx/miller_ops.h cctbx/sgtbx/operator_from_axis_direction.h cctbx/sgtbx/parse_string.h cctbx/sgtbx/phase_info.h cctbx/sgtbx/reciprocal_space_asu.h cctbx/sgtbx/reciprocal_space_reference_asu.h cctbx/sgtbx/reference_settings.h cctbx/sgtbx/rot_mx.h cctbx/sgtbx/rot_mx_hash.h cctbx/sgtbx/rot_mx_info.h cctbx/sgtbx/rotation_matrices.h cctbx/sgtbx/row_echelon_solve.h cctbx/sgtbx/rt_mx.h cctbx/sgtbx/rt_mx_hash.h cctbx/sgtbx/search_symmetry.h cctbx/sgtbx/select_generators.h cctbx/sgtbx/seminvariant.h cctbx/sgtbx/site_constraints.h cctbx/sgtbx/site_symmetry.h cctbx/sgtbx/site_symmetry_table.h cctbx/sgtbx/smith_normal_form.h cctbx/sgtbx/space_group.h cctbx/sgtbx/space_group_hash.h cctbx/sgtbx/space_group_type.h cctbx/sgtbx/sym_equiv_sites.h cctbx/sgtbx/symbols.h cctbx/sgtbx/sys_abs_equiv.h cctbx/sgtbx/tensor_rank_2.h cctbx/sgtbx/tensors.h cctbx/sgtbx/tr_group.h cctbx/sgtbx/tr_group_hash.h cctbx/sgtbx/tr_vec.h cctbx/sgtbx/tr_vec_hash.h cctbx/sgtbx/utils.h cctbx/sgtbx/wyckoff.h cctbx/sgtbx/direct_space_asu/ cctbx/sgtbx/direct_space_asu/proto/ cctbx/sgtbx/direct_space_asu/proto/asymmetric_unit.h cctbx/sgtbx/direct_space_asu/proto/cut.h cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.h cctbx/sgtbx/direct_space_asu/proto/expressions.h cctbx/sgtbx/direct_space_asu/proto/facet_collection.h cctbx/sgtbx/direct_space_asu/proto/reference_table.h cctbx/sgtbx/direct_space_asu/proto/shortcuts.h cctbx/sgtbx/direct_space_asu/proto/small_vec_math.h cctbx/symmetry_search/ cctbx/symmetry_search/translation_refinement.h cctbx/translation_search/ cctbx/translation_search/fast_nv1995.h cctbx/translation_search/fast_terms.h cctbx/translation_search/namespace.h cctbx/translation_search/symmetry_flags.h cctbx/translation_search/fast_nv1995/ cctbx/translation_search/fast_nv1995/combinations.h cctbx/translation_search/fast_nv1995/intermediates.h cctbx/translation_search/fast_nv1995/summations.h cctbx/uctbx/ cctbx/uctbx/fast_minimum_reduction.h cctbx/uctbx/niggli_reduction.h cctbx/uctbx/determine_unit_cell/ cctbx/uctbx/determine_unit_cell/NCDist.h cctbx/xray/ cctbx/xray/conversions.h cctbx/xray/curvatures_simple.h cctbx/xray/each_hkl_gradients_direct.h cctbx/xray/extinction.h cctbx/xray/f_model.h cctbx/xray/fast_gradients.h cctbx/xray/gradient_flags.h cctbx/xray/gradients_direct.h cctbx/xray/grouped_data.h cctbx/xray/hr_ht_cache.h cctbx/xray/minimization.h cctbx/xray/observations.h cctbx/xray/packing_order.h cctbx/xray/parameter_map.h cctbx/xray/sampled_model_density.h cctbx/xray/sampling_base.h cctbx/xray/sampling_loop.h cctbx/xray/scatterer.h cctbx/xray/scatterer_flags.h cctbx/xray/scatterer_utils.h cctbx/xray/scattering_type_registry.h cctbx/xray/sigmaa.h cctbx/xray/structure_factors_direct.h cctbx/xray/structure_factors_simple.h cctbx/xray/targets.h cctbx/xray/twin_component.h cctbx/xray/twin_targets.h cctbx/xray/targets/ cctbx/xray/targets/common_results.h cctbx/xray/targets/correlation.h cctbx/xray/targets/least_squares.h cctbx/xray/targets/mlf.h cctbx/xray/targets/mlhl.h cctbx/xray/targets/mli.h cctbx/xray/targets/shelxl_wght_ls.hpp sent 1,947,422 bytes received 4,458 bytes 3,903,760.00 bytes/sec total size is 1,930,152 speedup is 0.99 building file list ... done cma_es/ cma_es/cma/ cma_es/cma/cmaes.h cma_es/cma/cmaes_interface.h sent 6,886 bytes received 60 bytes 13,892.00 bytes/sec total size is 6,671 speedup is 0.96 building file list ... done sent 199 bytes received 12 bytes 422.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done dxtbx/ dxtbx/error.h dxtbx/imageset.h dxtbx/array_family/ dxtbx/array_family/flex_table.h dxtbx/array_family/flex_table_suite.h dxtbx/array_family/ref_pickle_double_buffered.h dxtbx/boost_python/ dxtbx/boost_python/compression.h dxtbx/format/ dxtbx/format/image.h dxtbx/format/boost_python/ dxtbx/format/boost_python/cbf_read_buffer.h dxtbx/masking/ dxtbx/masking/goniometer_shadow_masking.h dxtbx/masking/masking.h dxtbx/model/ dxtbx/model/beam.h dxtbx/model/crystal.h dxtbx/model/detector.h dxtbx/model/experiment.h dxtbx/model/experiment_list.h dxtbx/model/goniometer.h dxtbx/model/history.h dxtbx/model/kappa_goniometer.h dxtbx/model/model_helpers.h dxtbx/model/multi_axis_goniometer.h dxtbx/model/panel.h dxtbx/model/panel_data.h dxtbx/model/parallax_correction.h dxtbx/model/pixel_to_millimeter.h dxtbx/model/ray_intersection.h dxtbx/model/scan.h dxtbx/model/scan_helpers.h dxtbx/model/spectrum.h dxtbx/model/virtual_panel.h dxtbx/model/boost_python/ dxtbx/model/boost_python/pickle_suite.h dxtbx/model/boost_python/to_from_dict.h sent 402,299 bytes received 629 bytes 805,856.00 bytes/sec total size is 399,803 speedup is 0.99 building file list ... done ./ fem.hpp noexcept_false.hpp fem/ fem/arr.hpp fem/arr_and_str_indices.hpp fem/arr_ref.hpp fem/arr_size.hpp fem/close_chain.hpp fem/common.hpp fem/data.hpp fem/data_of_type.hpp fem/data_type_star.hpp fem/dimension.hpp fem/do.hpp fem/error_utils.hpp fem/file_positioning_chain.hpp fem/format.hpp fem/inquire_chain.hpp fem/intrinsics.hpp fem/intrinsics_extra.hpp fem/io.hpp fem/io_exceptions.hpp fem/main.hpp fem/major_types.hpp fem/open_chain.hpp fem/read.hpp fem/size_t.hpp fem/star.hpp fem/stop.hpp fem/str.hpp fem/str_arr_ref.hpp fem/str_ref.hpp fem/variant.hpp fem/write.hpp fem/zero.hpp fem/utils/ fem/utils/char.hpp fem/utils/double_to_string.hpp fem/utils/equivalence.hpp fem/utils/int_types.hpp fem/utils/misc.hpp fem/utils/path.hpp fem/utils/random.hpp fem/utils/real_as_string.hpp fem/utils/simple_streams.hpp fem/utils/string.hpp fem/utils/string_to_double.hpp fem/utils/string_to_double_fmt.hpp fem/utils/token.hpp sent 204,805 bytes received 918 bytes 411,446.00 bytes/sec total size is 201,540 speedup is 0.98 building file list ... done gltbx/ gltbx/error.h gltbx/error_utils.h gltbx/fonts_ucs.h gltbx/glext.h gltbx/include_opengl.h gltbx/pointer_args_bpl.h gltbx/quadrics.h gltbx/special_wrapper_support.h gltbx/util.h sent 598,794 bytes received 190 bytes 1,197,968.00 bytes/sec total size is 597,954 speedup is 1.00 building file list ... done iotbx/ iotbx/error.h iotbx/detectors/ iotbx/detectors/bruker.h iotbx/detectors/display.h iotbx/detectors/image_divider.h iotbx/detectors/scanbox.h iotbx/detectors/context/ iotbx/detectors/context/spot_xy_convention.h iotbx/dsn6/ iotbx/dsn6/dsn6.hpp iotbx/mtz/ iotbx/mtz/batch.h iotbx/mtz/column.h iotbx/mtz/crystal.h iotbx/mtz/dataset.h iotbx/mtz/object.h iotbx/pdb/ iotbx/pdb/common_residue_names.h iotbx/pdb/hierarchy.h iotbx/pdb/hierarchy_atoms.h iotbx/pdb/hierarchy_bpl.h iotbx/pdb/hybrid_36_c.h iotbx/pdb/hybrid_36_cpp.h iotbx/pdb/input.h iotbx/pdb/modified_aa_names.h iotbx/pdb/modified_rna_dna_names.h iotbx/pdb/namespace.h iotbx/pdb/rna_dna_atom_names.h iotbx/pdb/small_str.h iotbx/pdb/utils.h iotbx/pdb/write_utils.h iotbx/pdb/write_utils_bpl.h iotbx/pdb/xray_structure.h iotbx/shelx/ iotbx/shelx/hklf.h iotbx/xplor/ iotbx/xplor/map_reader.h iotbx/xplor/map_writer.h sent 273,612 bytes received 629 bytes 548,482.00 bytes/sec total size is 270,737 speedup is 0.99 building file list ... done sent 1,573 bytes received 12 bytes 3,170.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done mmtbx/ mmtbx/error.h mmtbx/import_scitbx_af.h mmtbx/alignment/ mmtbx/alignment/align.h mmtbx/alignment/alignment.h mmtbx/alignment/tables.h mmtbx/building/ mmtbx/building/loop_closure/ mmtbx/building/loop_closure/ccd.h mmtbx/bulk_solvent/ mmtbx/bulk_solvent/bulk_solvent.h mmtbx/bulk_solvent/mosaic.h mmtbx/den/ mmtbx/den/den.h mmtbx/dynamics/ mmtbx/dynamics/dynamics.h mmtbx/f_model/ mmtbx/f_model/f_model.h mmtbx/geometry/ mmtbx/geometry/asa.hpp mmtbx/geometry/calculator.hpp mmtbx/geometry/clash.hpp mmtbx/geometry/containment.hpp mmtbx/geometry/flattening.hpp mmtbx/geometry/indexing.hpp mmtbx/geometry/overlap.hpp mmtbx/geometry/primitive.hpp mmtbx/geometry/sphere_surface_sampling.hpp mmtbx/geometry/boost_python/ mmtbx/geometry/boost_python/containment.hpp mmtbx/geometry/boost_python/indexing.hpp mmtbx/geometry_restraints/ mmtbx/geometry_restraints/ramachandran.h mmtbx/geometry_restraints/reference_coordinate.h mmtbx/hydrogens/ mmtbx/hydrogens/hydrogens.h mmtbx/masks/ mmtbx/masks/atom_mask.h mmtbx/masks/grid_symop.h mmtbx/masks/util.h mmtbx/max_lik/ mmtbx/max_lik/max_lik.h mmtbx/max_lik/solvent_distribution_nco_09may2005.h mmtbx/max_lik/solvent_distribution_nco_09may2005_short.h mmtbx/max_lik/solvent_distribution_nco_09may2005_short_uniform.h mmtbx/max_lik/solvent_distribution_nco_14mar2005.h mmtbx/max_lik/solvent_distribution_nco_14mar2005_mod.h mmtbx/max_lik/solvent_distribution_nco_14mar2005_short.h mmtbx/max_lik/wat_dist_r_0_1.h mmtbx/max_lik/wat_dist_r_2p0_2p5.h mmtbx/ncs/ mmtbx/ncs/cartesian_restraints.h mmtbx/ncs/tncs.h mmtbx/pair_interaction/ mmtbx/pair_interaction/interaction.h mmtbx/probe/ mmtbx/probe/Common.h mmtbx/probe/DotSpheres.h mmtbx/probe/Scoring.h mmtbx/probe/SpatialQuery.h mmtbx/reduce/ mmtbx/reduce/InteractionGraph.h mmtbx/reduce/Optimizers.h mmtbx/reduce/PositionReturn.h mmtbx/rotamer/ mmtbx/rotamer/fit.h mmtbx/rsr/ mmtbx/rsr/rsr.h mmtbx/scaling/ mmtbx/scaling/absolute_scaling.h mmtbx/scaling/outlier.h mmtbx/scaling/relative_scaling.h mmtbx/scaling/scaling.h mmtbx/scaling/twinning.h mmtbx/secondary_structure/ mmtbx/secondary_structure/dssp.hpp mmtbx/secondary_structure/identify.hpp mmtbx/tls/ mmtbx/tls/decompose.h mmtbx/tls/optimise_amplitudes.h mmtbx/tls/tls.h mmtbx/tls/utils.h mmtbx/utils/ mmtbx/utils/utils.h mmtbx/validation/ mmtbx/validation/ramachandran/ mmtbx/validation/ramachandran/rama8000_tables.h mmtbx/validation/ramachandran/rama_eval.h sent 2,054,939 bytes received 1,291 bytes 4,112,460.00 bytes/sec total size is 2,048,540 speedup is 1.00 building file list ... done omptbx/ omptbx/lock.h omptbx/omp_or_stubs.h omptbx/stubs.h sent 2,109 bytes received 76 bytes 4,370.00 bytes/sec total size is 1,850 speedup is 0.85 building file list ... done rstbx/ rstbx/backplane.h rstbx/import_scitbx_af.hpp rstbx/apps/ rstbx/apps/stills/ rstbx/apps/stills/simple_integration.h rstbx/bandpass/ rstbx/bandpass/parameters.h rstbx/bandpass/subpixel_joint_model.h rstbx/bpcx/ rstbx/bpcx/detector_model/ rstbx/bpcx/detector_model/sensor.h rstbx/diffraction/ rstbx/diffraction/ewald_sphere.h rstbx/diffraction/partial_spot_position_partial_H.h rstbx/diffraction/reflection_range.h rstbx/diffraction/fastbragg/ rstbx/diffraction/fastbragg/fastbragg.h rstbx/dps_core/ rstbx/dps_core/direction.h rstbx/dps_core/directional_fft.h rstbx/dps_core/dps_core.h rstbx/dps_core/spotclass.h rstbx/indexing_api/ rstbx/indexing_api/indexing_api.h rstbx/simage/ rstbx/simage/image_simple.hpp rstbx/simulation/ rstbx/simulation/sim_xfel1.h rstbx/symmetry/ rstbx/symmetry/constraints/ rstbx/symmetry/constraints/a_g_conversion.h sent 111,348 bytes received 400 bytes 223,496.00 bytes/sec total size is 109,476 speedup is 0.98 building file list ... done scitbx/ scitbx/auto_array.h scitbx/constants.h scitbx/cubicle_neighbors.hpp scitbx/cubicles.h scitbx/error.h scitbx/error_utils.h scitbx/histogram.h scitbx/indexed_value.h scitbx/iso_surface.h scitbx/lbfgs.h scitbx/lbfgsb.h scitbx/mat2.h scitbx/mat3.h scitbx/numerical.h scitbx/r3_utils.hpp scitbx/random.h scitbx/random_legacy_boost_1_63.h scitbx/rational.h scitbx/rotr3.h scitbx/sym_mat2.h scitbx/sym_mat3.h scitbx/type_holder.h scitbx/vec2.h scitbx/vec3.h scitbx/weighted_histogram.h scitbx/array_family/ scitbx/array_family/array_adaptor.h scitbx/array_family/block_iterator.h scitbx/array_family/counts.h scitbx/array_family/error.h scitbx/array_family/flex_types.h scitbx/array_family/initialiser.h scitbx/array_family/linear_interpolation.h scitbx/array_family/loops.h scitbx/array_family/memory.h scitbx/array_family/misc_functions.h scitbx/array_family/owning_ref.h scitbx/array_family/range.h scitbx/array_family/ref.h scitbx/array_family/ref_matrix.h scitbx/array_family/ref_reductions.h scitbx/array_family/selections.h scitbx/array_family/shared.h scitbx/array_family/shared_plain.h scitbx/array_family/simple_io.h scitbx/array_family/simple_tiny_io.h scitbx/array_family/slice.h scitbx/array_family/small.h scitbx/array_family/small_plain.h scitbx/array_family/sort.h scitbx/array_family/tiny.h scitbx/array_family/tiny_mat_ref.h scitbx/array_family/tiny_plain.h scitbx/array_family/tiny_types.h scitbx/array_family/type_traits.h scitbx/array_family/versa.h scitbx/array_family/versa_matrix.h scitbx/array_family/versa_plain.h scitbx/array_family/accessors/ scitbx/array_family/accessors/c_grid.h scitbx/array_family/accessors/c_grid_padded.h scitbx/array_family/accessors/c_grid_padded_periodic.h scitbx/array_family/accessors/c_grid_periodic.h scitbx/array_family/accessors/c_index_1d_calculator.h scitbx/array_family/accessors/c_interval_grid.h scitbx/array_family/accessors/f_grid.h scitbx/array_family/accessors/flex_grid.h scitbx/array_family/accessors/mat_grid.h scitbx/array_family/accessors/packed_matrix.h scitbx/array_family/accessors/rectangular_full_packed.h scitbx/array_family/accessors/row_and_column.h scitbx/array_family/accessors/striding.h scitbx/array_family/accessors/traits.h scitbx/array_family/accessors/trivial.h scitbx/array_family/boost_python/ scitbx/array_family/boost_python/byte_str.h scitbx/array_family/boost_python/c_grid_flex_conversions.h scitbx/array_family/boost_python/flex_helpers.h scitbx/array_family/boost_python/flex_pickle_double_buffered.h scitbx/array_family/boost_python/flex_pickle_single_buffered.h scitbx/array_family/boost_python/flex_wrapper.h scitbx/array_family/boost_python/flex_wrapper_complex.h scitbx/array_family/boost_python/numpy_bridge.hpp scitbx/array_family/boost_python/owning_ref_conversions.h scitbx/array_family/boost_python/packed_to_flex_conversions.h scitbx/array_family/boost_python/passing_flex_by_reference.h scitbx/array_family/boost_python/range_wrappers.h scitbx/array_family/boost_python/ref_flex_conversions.h scitbx/array_family/boost_python/ref_from_array.h scitbx/array_family/boost_python/ref_pickle_double_buffered.h scitbx/array_family/boost_python/selections_wrapper.h scitbx/array_family/boost_python/shared_flat_conversions.h scitbx/array_family/boost_python/shared_flex_conversions.h scitbx/array_family/boost_python/shared_wrapper.h scitbx/array_family/boost_python/utils.h scitbx/array_family/detail/ scitbx/array_family/detail/auto_allocator.h scitbx/array_family/detail/generic_array_functors.h scitbx/array_family/detail/generic_array_operators.h scitbx/array_family/detail/misc.h scitbx/array_family/detail/push_back_etc.h scitbx/array_family/detail/reducing_boolean_mem_fun.h scitbx/array_family/detail/ref_helpers.h scitbx/array_family/detail/tiny_helpers.h scitbx/boost_python/ scitbx/boost_python/array_as_list.h scitbx/boost_python/container_conversions.h scitbx/boost_python/cstringio_utils.h scitbx/boost_python/is_polymorphic_workaround.h scitbx/boost_python/iterator_range.hpp scitbx/boost_python/iterator_wrappers.h scitbx/boost_python/pair_as_tuple.hpp scitbx/boost_python/sequence_as_array.h scitbx/boost_python/slice.h scitbx/boost_python/stl_map_as_dict.h scitbx/boost_python/utils.h scitbx/examples/ scitbx/examples/bevington/ scitbx/examples/bevington/prototype_core.h scitbx/fftpack/ scitbx/fftpack/complex_to_complex.h scitbx/fftpack/complex_to_complex_2d.h scitbx/fftpack/complex_to_complex_3d.h scitbx/fftpack/factorization.h scitbx/fftpack/gridding.h scitbx/fftpack/real_to_complex.h scitbx/fftpack/real_to_complex_3d.h scitbx/fftpack/detail/ scitbx/fftpack/detail/real_to_complex_backward.h scitbx/fftpack/detail/real_to_complex_forward.h scitbx/fftpack/detail/ref.h scitbx/glmtbx/ scitbx/glmtbx/family.h scitbx/glmtbx/glm.h scitbx/glmtbx/robust_glm.h scitbx/graphics_utils/ scitbx/graphics_utils/colors.h scitbx/lbfgs/ scitbx/lbfgs/drop_convergence_test.h scitbx/lbfgs/raw.h scitbx/lbfgs/raw_reference.h scitbx/lbfgsb/ scitbx/lbfgsb/fortran_interface.h scitbx/lbfgsb/raw.h scitbx/line_search/ scitbx/line_search/more_thuente_1994.h scitbx/line_search/more_thuente_1994_raw.h scitbx/lstbx/ scitbx/lstbx/normal_equations.h scitbx/math/ scitbx/math/2d_zernike_moments.h scitbx/math/accumulators.h scitbx/math/angle_derivative.h scitbx/math/approx_equal.h scitbx/math/atanh.h scitbx/math/basic_statistics.h scitbx/math/bessel.h scitbx/math/cartesian_product_fixed_size.hpp scitbx/math/chebyshev.h scitbx/math/compile_time.h scitbx/math/continued_fraction.h scitbx/math/copysign.h scitbx/math/cubic_equation.h scitbx/math/dihedral.h scitbx/math/distance_difference.h scitbx/math/distributions.h scitbx/math/eigensystem.h scitbx/math/erf.h scitbx/math/euler_angles.h scitbx/math/fast_approx_math.h scitbx/math/floating_point_epsilon.h scitbx/math/g_function.h scitbx/math/gamma.h scitbx/math/gaussian_fit_1d_analytical.h scitbx/math/gcd.h scitbx/math/golay.h scitbx/math/halton.h scitbx/math/icosahedron.h scitbx/math/imaginary.h scitbx/math/inertia_tensor.h scitbx/math/interpolation.h scitbx/math/jacks_expf.h scitbx/math/lambertw.h scitbx/math/least_squares_plane.h scitbx/math/linear_correlation.h scitbx/math/linear_interpolation.h scitbx/math/linear_regression.h scitbx/math/mean_and_variance.h scitbx/math/minimum_covering_sphere.h scitbx/math/modulo.h scitbx/math/namespace.h scitbx/math/numeric_limits.h scitbx/math/orthonormal_basis.h scitbx/math/parabolic_cylinder_d.h scitbx/math/phase_error.h scitbx/math/polygon_intersection.h scitbx/math/principal_axes_of_inertia.h scitbx/math/quadrature.h scitbx/math/r3_rotation.h scitbx/math/resample.h scitbx/math/rotate_around_axis.h scitbx/math/rotation.h scitbx/math/superpose.h scitbx/math/tetrahedron.h scitbx/math/traits.h scitbx/math/unimodular_generator.h scitbx/math/utils.h scitbx/math/weighted_covariance.h scitbx/math/zernike.h scitbx/math/zernike_moments.h scitbx/math/erf/ scitbx/math/erf/constants.h scitbx/math/erf/engine.h scitbx/math/gaussian/ scitbx/math/gaussian/fit.h scitbx/math/gaussian/namespace.h scitbx/math/gaussian/sum.h scitbx/math/gaussian/term.h scitbx/matrix/ scitbx/matrix/as_xyz.h scitbx/matrix/cholesky.h scitbx/matrix/delta_tensors.h scitbx/matrix/diagonal.h scitbx/matrix/eigensystem.h scitbx/matrix/givens.h scitbx/matrix/householder.h scitbx/matrix/inversion.h scitbx/matrix/lu_decomposition.h scitbx/matrix/matrix_vector_operations.h scitbx/matrix/move.h scitbx/matrix/multiply.h scitbx/matrix/norms.h scitbx/matrix/outer_product.h scitbx/matrix/packed.h scitbx/matrix/row_echelon.h scitbx/matrix/row_echelon_full_pivoting.h scitbx/matrix/row_echelon_full_pivoting_impl.h scitbx/matrix/row_echelon_full_pivoting_small.h scitbx/matrix/special_matrices.h scitbx/matrix/svd.h scitbx/matrix/symmetric_rank_1_update.h scitbx/matrix/tensor_rank_2.h scitbx/matrix/tensors.h scitbx/matrix/tests.h scitbx/matrix/transpose_multiply.h scitbx/matrix/triangular_systems.h scitbx/matrix/vector_operations.h scitbx/matrix/tests/ scitbx/matrix/tests/utils.h scitbx/minpack/ scitbx/minpack/levenberg_marquardt.h scitbx/minpack/raw.h scitbx/misc/ scitbx/misc/file_utils.h scitbx/misc/positive_getitem_index.h scitbx/misc/split_lines.h scitbx/random/ scitbx/random/mersenne_twister.h scitbx/random/variate_generator.h scitbx/random/boost_python/ scitbx/random/boost_python/random.h scitbx/rigid_body/ scitbx/rigid_body/array_packing.h scitbx/rigid_body/body_lib.h scitbx/rigid_body/body_t.h scitbx/rigid_body/featherstone.h scitbx/rigid_body/joint_lib.h scitbx/rigid_body/joint_t.h scitbx/rigid_body/matrix_helpers.h scitbx/rigid_body/namespace.h scitbx/rigid_body/spatial_lib.h scitbx/rigid_body/tardy.h scitbx/serialization/ scitbx/serialization/base_256.h scitbx/serialization/double_buffered.h scitbx/serialization/single_buffered.h scitbx/slatec/ scitbx/slatec/lib_c.h scitbx/slatec/lib_cpp.h scitbx/sparse/ scitbx/sparse/approx_equal.h scitbx/sparse/dfs.h scitbx/sparse/io.h scitbx/sparse/lu_factorization.h scitbx/sparse/matrix.h scitbx/sparse/operators.h scitbx/sparse/random.h scitbx/sparse/triangular.h scitbx/sparse/util.h scitbx/sparse/vector.h scitbx/sparse/boost_python/ scitbx/sparse/boost_python/vector.h scitbx/stl/ scitbx/stl/map_as_python_dict.h scitbx/stl/map_fwd.h scitbx/stl/map_wrapper.h scitbx/stl/set_wrapper.h scitbx/stl/vector_as_python_list.h scitbx/stl/vector_io.h scitbx/stl/vector_wrapper.h scitbx/suffixtree/ scitbx/suffixtree/builder.hpp scitbx/suffixtree/edge.hpp scitbx/suffixtree/exception.hpp scitbx/suffixtree/glyph.hpp scitbx/suffixtree/iterator.hpp scitbx/suffixtree/matching_statistics.hpp scitbx/suffixtree/tree.hpp scitbx/suffixtree/word.hpp scitbx/suffixtree/boost_python/ scitbx/suffixtree/boost_python/edge_exports.hpp scitbx/suffixtree/boost_python/iterator_wrapper.hpp scitbx/suffixtree/boost_python/object_extensions.hpp scitbx/suffixtree/boost_python/tree_exports.hpp scitbx/util/ scitbx/util/cpu_timer.h scitbx/wigner/ scitbx/wigner/wigner3j.h sent 1,906,901 bytes received 5,521 bytes 3,824,844.00 bytes/sec total size is 1,886,651 speedup is 0.99 building file list ... done sent 154 bytes received 12 bytes 332.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ smtbx/error.h smtbx/import_cctbx.h smtbx/import_scitbx_af.h smtbx/ab_initio/ smtbx/ab_initio/density_modification.h smtbx/refinement/ smtbx/refinement/import_cctbx_xray.h smtbx/refinement/least_squares.h smtbx/refinement/weighting_schemes.h smtbx/refinement/constraints/ smtbx/refinement/constraints/affine.h smtbx/refinement/constraints/direction.h smtbx/refinement/constraints/geometrical_hydrogens.h smtbx/refinement/constraints/occupancy.h smtbx/refinement/constraints/proxy.h smtbx/refinement/constraints/reparametrisation.h smtbx/refinement/constraints/rigid.h smtbx/refinement/constraints/same_group.h smtbx/refinement/constraints/scaled_adp.h smtbx/refinement/constraints/scatterer_parameters.h smtbx/refinement/constraints/shared.h smtbx/refinement/constraints/special_position.h smtbx/refinement/constraints/symmetry_equivalent.h smtbx/refinement/constraints/u_eq_dependent_u_iso.h smtbx/refinement/constraints/u_iso_dependent_u_iso.h smtbx/refinement/restraints/ smtbx/refinement/restraints/origin_fixing.h smtbx/structure_factors/ smtbx/structure_factors/direct/ smtbx/structure_factors/direct/standard_xray.h smtbx/structure_factors/direct/table_based.h sent 182,153 bytes received 512 bytes 365,330.00 bytes/sec total size is 179,686 speedup is 0.98 building file list ... done spotfinder/ spotfinder/applications/ spotfinder/applications/find_active_area.h spotfinder/core_toolbox/ spotfinder/core_toolbox/distl.h spotfinder/core_toolbox/hough.h spotfinder/core_toolbox/libdistl.h spotfinder/core_toolbox/spot_shapes.h spotfinder/core_toolbox/spot_types.h spotfinder/core_toolbox/spotfilter.h spotfinder/core_toolbox/boost_python/ spotfinder/core_toolbox/boost_python/singlemask.h spotfinder/dxtbx_toolbox/ spotfinder/dxtbx_toolbox/distl.h spotfinder/dxtbx_toolbox/libdistl.h sent 42,955 bytes received 221 bytes 86,352.00 bytes/sec total size is 41,966 speedup is 0.97 building file list ... done tbxx/ tbxx/alignment.h tbxx/error_utils.hpp tbxx/libc_backtrace.hpp tbxx/optional_copy.hpp tbxx/pretty_type_name.hpp tbxx/time_accu.hpp sent 12,025 bytes received 133 bytes 24,316.00 bytes/sec total size is 11,532 speedup is 0.95 building file list ... done sent 150 bytes received 12 bytes 324.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done xcif/ xcif/include/ xcif/include/xcif/ xcif/include/xcif/data_model.h xcif/include/xcif/mapped_file.h xcif/include/xcif/numeric.h xcif/include/xcif/string_view.h xcif/include/xcif/tokenizer.h xcif/regression/ xcif/regression/cpp/ xcif/regression/cpp/test_utils.h sent 24,012 bytes received 145 bytes 48,314.00 bytes/sec total size is 23,452 speedup is 0.97 building file list ... done ./ boost_adaptbx/ boost_adaptbx/type_id_eq.h cctbx/boost_python/ cctbx/boost_python/flex_fwd.h scitbx/lbfgs_fem.hpp scitbx/array_family/ scitbx/array_family/operator_traits_builtin.h scitbx/array_family/ref_algebra.h scitbx/array_family/ref_apply.h scitbx/array_family/shared_algebra.h scitbx/array_family/shared_apply.h scitbx/array_family/shared_plain_apply.h scitbx/array_family/shared_reductions.h scitbx/array_family/small_algebra.h scitbx/array_family/small_apply.h scitbx/array_family/small_plain_apply.h scitbx/array_family/small_reductions.h scitbx/array_family/tiny_algebra.h scitbx/array_family/tiny_apply.h scitbx/array_family/tiny_plain_apply.h scitbx/array_family/tiny_reductions.h scitbx/array_family/versa_algebra.h scitbx/array_family/versa_apply.h scitbx/array_family/versa_plain_apply.h scitbx/array_family/versa_reductions.h scitbx/array_family/boost_python/ scitbx/array_family/boost_python/flex_fwd.h scitbx/array_family/detail/ scitbx/array_family/detail/operator_functors.h scitbx/array_family/detail/std_imports.h smtbx/boost_python/ smtbx/boost_python/flex_fwd.h sent 347,336 bytes received 531 bytes 695,734.00 bytes/sec total size is 345,070 speedup is 0.99 building file list ... done sent 253 bytes received 12 bytes 530.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/ boost_adaptbx/command_line/ boost_adaptbx/command_line/__init__.py boost_adaptbx/command_line/divide_by_zero.py boost_adaptbx/command_line/double_overflow.py boost_adaptbx/command_line/gcd.py boost_adaptbx/command_line/inexact.py boost_adaptbx/command_line/int_overflow.py boost_adaptbx/command_line/lcm.py boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py boost_adaptbx/command_line/segmentation_fault.py boost_adaptbx/command_line/show_environ_usage.py boost_adaptbx/command_line/show_platform_info.py sent 7,883 bytes received 231 bytes 16,228.00 bytes/sec total size is 6,883 speedup is 0.85 building file list ... done cbflib_adaptbx/ cbflib_adaptbx/command_line/ cbflib_adaptbx/command_line/__init__.py cbflib_adaptbx/command_line/dump.py sent 1,533 bytes received 60 bytes 3,186.00 bytes/sec total size is 1,215 speedup is 0.76 building file list ... done sent 143 bytes received 12 bytes 310.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done cctbx/ cctbx/command_line/ cctbx/command_line/__init__.py cctbx/command_line/auto_sharpen.py cctbx/command_line/brehm_diederichs.py cctbx/command_line/cctbx_test_nightly.py cctbx/command_line/cod_select_and_pickle.py cctbx/command_line/diffuse.py cctbx/command_line/eltbx.show_fp_fdp.py cctbx/command_line/euclidean_model_matching.py cctbx/command_line/find_reticular_twin_laws.py cctbx/command_line/form_factor_query.py cctbx/command_line/precession_view.py cctbx/command_line/qscore.py cctbx/command_line/samosa_join.py cctbx/command_line/samosa_scale.py cctbx/command_line/segment_and_split_map.py cctbx/command_line/space_group_info.py cctbx/command_line/structure_factor_timings.py cctbx/command_line/subgroups.py cctbx/command_line/version.py cctbx/command_line/wavelength_units.py cctbx/command_line/web.install.csh sent 43,122 bytes received 421 bytes 87,086.00 bytes/sec total size is 39,872 speedup is 0.92 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done crys3d/ crys3d/command_line/ crys3d/command_line/HKLinfo.py crys3d/command_line/HKLviewer.py crys3d/command_line/__init__.py crys3d/command_line/compare_datasets.py crys3d/command_line/hklview.py crys3d/command_line/make_install_HKLviewer_ChimeraX.py crys3d/command_line/model_viewer.py crys3d/command_line/multiplicity_viewer.py crys3d/command_line/qttbx.view_structure.py crys3d/command_line/visualize_r_factors.py sent 32,588 bytes received 212 bytes 65,600.00 bytes/sec total size is 31,684 speedup is 0.97 building file list ... done dxtbx/ dxtbx/command_line/ dxtbx/command_line/__init__.py dxtbx/command_line/any2nexus.py dxtbx/command_line/debug_memory.py dxtbx/command_line/depends_on.py dxtbx/command_line/detector_superpose.py dxtbx/command_line/display_parallax_correction.py dxtbx/command_line/dlsnxs2cbf.py dxtbx/command_line/image2pickle.py dxtbx/command_line/image_availability.py dxtbx/command_line/image_average.py dxtbx/command_line/install_format.py dxtbx/command_line/overload.py dxtbx/command_line/plot_detector_models.py dxtbx/command_line/print_header.py dxtbx/command_line/print_matching_images.py dxtbx/command_line/radial_average.py dxtbx/command_line/read_sequence.py dxtbx/command_line/saturation.py dxtbx/command_line/show_mask_info.py dxtbx/command_line/show_matching_formats.py dxtbx/command_line/show_registry.py dxtbx/command_line/simulate_collection.py sent 112,428 bytes received 440 bytes 225,736.00 bytes/sec total size is 110,557 speedup is 0.98 building file list ... done fable/ fable/command_line/ fable/command_line/__init__.py fable/command_line/cout.py fable/command_line/fem_include_search_paths.py fable/command_line/insert_write_at_start_of_each_procedure.py fable/command_line/read.py fable/command_line/show_calls.py fable/command_line/split.py sent 16,379 bytes received 155 bytes 33,068.00 bytes/sec total size is 15,611 speedup is 0.94 building file list ... done gltbx/ gltbx/command_line/ gltbx/command_line/__init__.py gltbx/command_line/try_imports.py sent 880 bytes received 60 bytes 1,880.00 bytes/sec total size is 606 speedup is 0.64 building file list ... done iotbx/ iotbx/command_line/ iotbx/command_line/__init__.py iotbx/command_line/biomt_reconstruction.py iotbx/command_line/blast_pdb.py iotbx/command_line/build_phil_cache.py iotbx/command_line/cbf_read.py iotbx/command_line/cif.as_miller_arrays.py iotbx/command_line/cif.as_xray_structure.py iotbx/command_line/cif.validate.py iotbx/command_line/cif_as_pdb.py iotbx/command_line/cns.reflection_reader.py iotbx/command_line/cns.sdb_reader.py iotbx/command_line/cns.transfer_crystal_symmetry.py iotbx/command_line/cns_as_mtz.py iotbx/command_line/crystal_symmetry_from_any.py iotbx/command_line/csv_as_mtz.py iotbx/command_line/dano_as_amplitudes.py iotbx/command_line/detector_image_as_png.py iotbx/command_line/distance_least_squares.py iotbx/command_line/dtrek.to_cns.py iotbx/command_line/effective_resolution.py iotbx/command_line/emma.py iotbx/command_line/explore_metric_symmetry.py iotbx/command_line/export_scalepack_unmerged.py iotbx/command_line/file_reader.py iotbx/command_line/flip_symmetric_amino_acids.py iotbx/command_line/french_wilson.py iotbx/command_line/get_pubmed_citation.py iotbx/command_line/lattice_symmetry.py iotbx/command_line/merging_statistics.py iotbx/command_line/mtrix_reconstruction.py iotbx/command_line/mtz.dump.py iotbx/command_line/mtz_as_cif.py iotbx/command_line/patterson_map.py iotbx/command_line/pdb.as_xray_structure.py iotbx/command_line/pdb.b_factor_stats.py iotbx/command_line/pdb.box_around_molecule.py iotbx/command_line/pdb.hierarchy.py iotbx/command_line/pdb.insert_scale_records.py iotbx/command_line/pdb.join_fragment_files.py iotbx/command_line/pdb.link_as_geometry_restraints_edits.py iotbx/command_line/pdb.print_sequence.py iotbx/command_line/pdb.superpose_atoms_by_name.py iotbx/command_line/pdb.superpose_centers_of_mass.py iotbx/command_line/pdb_add_conformations.py iotbx/command_line/pdb_as_cif.py iotbx/command_line/pdb_as_fasta.py iotbx/command_line/pdb_cif_conversion.py iotbx/command_line/pdb_get_citation.py iotbx/command_line/pdb_labels_comparison.py iotbx/command_line/pdb_labels_diff.py iotbx/command_line/pdb_remediator.py iotbx/command_line/pdb_show_connectivity.py iotbx/command_line/pdb_split_models.py iotbx/command_line/phil.py iotbx/command_line/poscar_as_xray_structure.py iotbx/command_line/r_free_flags_accumulation.py iotbx/command_line/r_free_flags_as_cns.py iotbx/command_line/r_free_flags_completion_simple.py iotbx/command_line/reflection_file_converter.py iotbx/command_line/reflection_file_editor.py iotbx/command_line/reflection_file_reader.py iotbx/command_line/reflection_statistics.py iotbx/command_line/reindex.py iotbx/command_line/shelx.as_cif.py iotbx/command_line/shelx.as_xray_structure.py iotbx/command_line/shelx.dump_as_python.py iotbx/command_line/show_distances.py iotbx/command_line/show_systematic_absences.py iotbx/command_line/simple_map_coefficients.py iotbx/command_line/sort_atoms.py iotbx/command_line/split_data_cif.py iotbx/command_line/symmetry_search.py iotbx/command_line/unique_with_biomt.py iotbx/command_line/xplor.map.show_summary.py sent 252,613 bytes received 1,428 bytes 508,082.00 bytes/sec total size is 246,561 speedup is 0.97 building file list ... done libtbx/ libtbx/command_line/ libtbx/command_line/__init__.py libtbx/command_line/add_docstrings_with_ai.py libtbx/command_line/analyse_code_comments.py libtbx/command_line/any2unix.py libtbx/command_line/assert_line_count.py libtbx/command_line/assert_not_show_diff.py libtbx/command_line/assert_stdin.py libtbx/command_line/assert_stdin_contains_strings.py libtbx/command_line/assert_stdin_ends_with.py libtbx/command_line/bash.sh libtbx/command_line/bibtex.sh libtbx/command_line/bootstrap.py libtbx/command_line/bundle_as_exe.py libtbx/command_line/bundle_as_selfx.csh libtbx/command_line/cctbx_chunk.py libtbx/command_line/check_libcpp.py libtbx/command_line/clean_clutter.py libtbx/command_line/clear_paths.py libtbx/command_line/configure.bat libtbx/command_line/configure.sh libtbx/command_line/create_cctbx_bundle_for_installer.py libtbx/command_line/create_install_script_bat.py libtbx/command_line/create_installer.py libtbx/command_line/create_mac_app.py libtbx/command_line/create_selfx.py libtbx/command_line/create_unzipsfx.py libtbx/command_line/create_windows_exe.py libtbx/command_line/csh.sh libtbx/command_line/dtrace.py libtbx/command_line/easy_qsub.py libtbx/command_line/env_run.py libtbx/command_line/epydoc_run.py libtbx/command_line/exec.sh libtbx/command_line/extract_code_from_txt.py libtbx/command_line/find_clutter.py libtbx/command_line/find_files.py libtbx/command_line/find_in_repositories.py libtbx/command_line/find_old_style_classes.py libtbx/command_line/find_pdb_mmcif_problems.py libtbx/command_line/find_reserved_names.py libtbx/command_line/find_under_build.py libtbx/command_line/find_untested.py libtbx/command_line/find_unused_imports.py libtbx/command_line/find_unused_imports_crude.py libtbx/command_line/gdb.sh libtbx/command_line/git_avoid_merges.py libtbx/command_line/help.py libtbx/command_line/import_all_ext.py libtbx/command_line/import_all_python.py libtbx/command_line/install.py libtbx/command_line/install_conda.py libtbx/command_line/ipython_shell_start.py libtbx/command_line/latex.sh libtbx/command_line/line_count.py libtbx/command_line/list_files.py libtbx/command_line/list_modules.py libtbx/command_line/list_source_files_sorted_by_size.py libtbx/command_line/make_dist.py libtbx/command_line/make_sphinx_html.py libtbx/command_line/nequal.py libtbx/command_line/parallel_simple.py libtbx/command_line/path_utility.py libtbx/command_line/pdflatex.sh libtbx/command_line/phil.py libtbx/command_line/prime_factors_of.py libtbx/command_line/printenv.py libtbx/command_line/py_compile_all.py libtbx/command_line/raise_exception_for_testing.py libtbx/command_line/refresh.bat libtbx/command_line/refresh.sh libtbx/command_line/reindent.py libtbx/command_line/remote_processing.py libtbx/command_line/remove_tree.py libtbx/command_line/remove_unused_imports.py libtbx/command_line/resource_monitor_plot.py libtbx/command_line/run_pickled_function.py libtbx/command_line/run_tests_parallel.py libtbx/command_line/scons.py libtbx/command_line/seconds_since_the_epoch.py libtbx/command_line/sge_available_slots.py libtbx/command_line/sge_qstat_counts.py libtbx/command_line/sh.sh libtbx/command_line/show_all_on_path.py libtbx/command_line/show_bin_path.py libtbx/command_line/show_build_options.py libtbx/command_line/show_build_path.py libtbx/command_line/show_but_no_repr.py libtbx/command_line/show_commands.py libtbx/command_line/show_date_and_time.py libtbx/command_line/show_dist_paths.py libtbx/command_line/show_env.py libtbx/command_line/show_environ_usage.py libtbx/command_line/show_full_command_path.py libtbx/command_line/show_host_and_user.py libtbx/command_line/show_include_paths.py libtbx/command_line/show_lib_path.py libtbx/command_line/show_module_dependencies.py libtbx/command_line/show_number_of_processors.py libtbx/command_line/show_numeric_version.py libtbx/command_line/show_numpy_version.py libtbx/command_line/show_python_dependencies.py libtbx/command_line/show_python_sys_executable.py libtbx/command_line/show_pythonpath.py libtbx/command_line/show_repository_paths.py libtbx/command_line/show_tests.py libtbx/command_line/show_variable_names.py libtbx/command_line/sphinx_build.py libtbx/command_line/start_binary_bundle.py libtbx/command_line/start_process.py libtbx/command_line/tcsh.sh libtbx/command_line/unpack_in_sources.csh libtbx/command_line/valgrind.sh libtbx/command_line/wait_for_file.py sent 232,602 bytes received 2,169 bytes 469,542.00 bytes/sec total size is 223,279 speedup is 0.95 building file list ... done mmtbx/ mmtbx/command_line/ mmtbx/command_line/__init__.py mmtbx/command_line/altloc_remediate.py mmtbx/command_line/angle.py mmtbx/command_line/apply_ncs_to_ligand.py mmtbx/command_line/arginine_geometry.py mmtbx/command_line/atom_valence_simple.py mmtbx/command_line/barbed_wire_analysis.py mmtbx/command_line/cablam.py mmtbx/command_line/cablam_idealization.py mmtbx/command_line/cbetadev.py mmtbx/command_line/cc_star.py mmtbx/command_line/chiral_validation.py mmtbx/command_line/cif_as_mtz.py mmtbx/command_line/clashscore.py mmtbx/command_line/clashscore2.py mmtbx/command_line/comparama.py mmtbx/command_line/debug_riding.py mmtbx/command_line/density_modification.py mmtbx/command_line/development_aev.py mmtbx/command_line/development_fem.py mmtbx/command_line/distance_difference.py mmtbx/command_line/dynamics.py mmtbx/command_line/electrons.py mmtbx/command_line/emringer.py mmtbx/command_line/emringer_score.py mmtbx/command_line/estimate_bijvoet_ratio.py mmtbx/command_line/f000.py mmtbx/command_line/fab_elbow_angle.py mmtbx/command_line/fake_f_obs.py mmtbx/command_line/fetch_pdb.py mmtbx/command_line/find_peaks_holes.py mmtbx/command_line/find_residue_in_pdb.py mmtbx/command_line/find_tls_groups.py mmtbx/command_line/fmodel.py mmtbx/command_line/fobs_minus_fobs_map.py mmtbx/command_line/geometry_minimization.py mmtbx/command_line/grow_density.py mmtbx/command_line/hbond.py mmtbx/command_line/helix_sheet_recs_as_pdb_files.py mmtbx/command_line/holton_geometry_validation.py mmtbx/command_line/hydrogenate.py mmtbx/command_line/kinemage.py mmtbx/command_line/ligand_restraints_validation.py mmtbx/command_line/map_box.py mmtbx/command_line/map_comparison.py mmtbx/command_line/map_to_model_histogram.py mmtbx/command_line/map_to_structure_factors.py mmtbx/command_line/maps.py mmtbx/command_line/mask.py mmtbx/command_line/massage_data.py mmtbx/command_line/matthews.py mmtbx/command_line/maximum_entropy_map.py mmtbx/command_line/model_idealization.py mmtbx/command_line/model_map.py mmtbx/command_line/model_model_distances.py mmtbx/command_line/model_vs_data.py mmtbx/command_line/model_vs_map.py mmtbx/command_line/model_vs_sequence.py mmtbx/command_line/models_as_chains.py mmtbx/command_line/molprobity.py mmtbx/command_line/mon_lib_cif_triage.py mmtbx/command_line/mp_geo.py mmtbx/command_line/mp_validate_bonds.py mmtbx/command_line/mtz2map.py mmtbx/command_line/next_gen_atom_typing.py mmtbx/command_line/next_gen_residue_typing.py mmtbx/command_line/nonbonded_overlaps.py mmtbx/command_line/omegalyze.py mmtbx/command_line/pdb_atom_selection.py mmtbx/command_line/pdb_interpretation.py mmtbx/command_line/pdbtools.py mmtbx/command_line/perigee.py mmtbx/command_line/plan_sad_experiment.py mmtbx/command_line/polder.py mmtbx/command_line/prepare_pdb_deposition.py mmtbx/command_line/probe2.py mmtbx/command_line/probescore_ligand.py mmtbx/command_line/process_predicted_model.py mmtbx/command_line/prune_model.py mmtbx/command_line/quantum_interface.py mmtbx/command_line/r_factor_statistics.py mmtbx/command_line/rama_z.py mmtbx/command_line/ramalyze.py mmtbx/command_line/rank_scale_map.py mmtbx/command_line/real_space_correlation.py mmtbx/command_line/real_space_diff_map.py mmtbx/command_line/rebuild_cablam_cache.py mmtbx/command_line/rebuild_rotarama_cache.py mmtbx/command_line/reciprocal_space_arrays.py mmtbx/command_line/reduce2.py mmtbx/command_line/reduce_cryoem_resolution.py mmtbx/command_line/refine_anomalous_substructure.py mmtbx/command_line/remove_outliers.py mmtbx/command_line/ribbons.py mmtbx/command_line/rigid_bond_test.py mmtbx/command_line/ringer.py mmtbx/command_line/rna_validate.py mmtbx/command_line/rna_validate_bonds.py mmtbx/command_line/rna_validate_puckers.py mmtbx/command_line/rna_validate_suites.py mmtbx/command_line/rotalyze.py mmtbx/command_line/search_pdb_symmetry.py mmtbx/command_line/secondary_structure_restraints.py mmtbx/command_line/secondary_structure_validation.py mmtbx/command_line/select_best_starting_model.py mmtbx/command_line/show_r_factors_by_shell.py mmtbx/command_line/sisa.py mmtbx/command_line/sort_hetatms.py mmtbx/command_line/ss_idealization.py mmtbx/command_line/suitename.py mmtbx/command_line/suitename_old.py mmtbx/command_line/super.py mmtbx/command_line/superpose.py mmtbx/command_line/taam_minus_iam.py mmtbx/command_line/table_one.py mmtbx/command_line/tls.py mmtbx/command_line/tls_analysis.py mmtbx/command_line/tls_as_xyz.py mmtbx/command_line/undowser.py mmtbx/command_line/undowser2.py mmtbx/command_line/validate_H_cl_app.py mmtbx/command_line/validate_ligands.py mmtbx/command_line/validation_summary.py mmtbx/command_line/verify_mon_lib_data.py mmtbx/command_line/water_b_factors.py mmtbx/command_line/where_is_that_cif_file.py mmtbx/command_line/xmanip.py mmtbx/command_line/xtrapol8.py mmtbx/command_line/xtriage.py mmtbx/regression/ mmtbx/regression/command_line/ mmtbx/regression/command_line/tst_find_residue_in_pdb.py sent 730,807 bytes received 2,498 bytes 1,466,610.00 bytes/sec total size is 720,263 speedup is 0.98 building file list ... done sent 70 bytes received 12 bytes 164.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done rstbx/ rstbx/command_line/ rstbx/command_line/__init__.py rstbx/command_line/example_viewer.py rstbx/command_line/index.py rstbx/command_line/simage.create.py rstbx/command_line/simage.explore_completeness.py rstbx/command_line/simage.solver.py rstbx/command_line/simage.wx_display.py rstbx/command_line/slip_viewer.py rstbx/command_line/viewer.py sent 12,288 bytes received 193 bytes 24,962.00 bytes/sec total size is 11,139 speedup is 0.89 building file list ... done scitbx/ scitbx/command_line/ scitbx/command_line/__init__.py scitbx/command_line/apply_tapenade_hints.py scitbx/command_line/generate_error_h.py scitbx/command_line/histogram.py scitbx/command_line/show_exp_times.py scitbx/command_line/show_sizes.py scitbx/command_line/unicode_examples.py sent 11,858 bytes received 155 bytes 24,026.00 bytes/sec total size is 10,021 speedup is 0.83 building file list ... done sent 154 bytes received 12 bytes 332.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ smtbx/command_line/ smtbx/command_line/__init__.py smtbx/command_line/absolute_structure.py smtbx/command_line/anom_refine.py smtbx/command_line/benchmark_refinement.py smtbx/command_line/masks.py smtbx/command_line/refine.py sent 38,570 bytes received 136 bytes 77,412.00 bytes/sec total size is 37,436 speedup is 0.97 building file list ... done spotfinder/ spotfinder/command_line/ spotfinder/command_line/__init__.py spotfinder/command_line/find_active_area.py spotfinder/command_line/image_viewer.py spotfinder/command_line/mp_spotfinder_server_read_file.py spotfinder/command_line/signal_strength.py spotfinder/command_line/sweep_strength.py spotfinder/command_line/thin_client.py sent 23,566 bytes received 155 bytes 47,442.00 bytes/sec total size is 22,750 speedup is 0.96 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done wxtbx/ wxtbx/command_line/ wxtbx/command_line/__init__.py wxtbx/command_line/anomalous_differences_histogram.py wxtbx/command_line/b_plot.py wxtbx/command_line/inspect_r_free_flags.py wxtbx/command_line/loggraph.py wxtbx/command_line/pdb_editor.py wxtbx/command_line/pdb_statistics.py wxtbx/command_line/plan_sad_experiment.py wxtbx/command_line/plot_anomalous_scattering.py wxtbx/command_line/show_file_info.py wxtbx/command_line/wxpython.py wxtbx/command_line/xtriage.py sent 17,087 bytes received 250 bytes 34,674.00 bytes/sec total size is 16,108 speedup is 0.93 building file list ... done sent 157 bytes received 12 bytes 338.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done sent 253 bytes received 12 bytes 530.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/graph/ boost_adaptbx/graph/tests/ boost_adaptbx/graph/tests/tst_graph.py boost_adaptbx/graph/tests/tst_graph_breadth_first_search.py boost_adaptbx/graph/tests/tst_graph_clustering_algorithm.py boost_adaptbx/graph/tests/tst_graph_connected_component_algorithm.py boost_adaptbx/graph/tests/tst_graph_graph_structure_comparison.py boost_adaptbx/graph/tests/tst_graph_maximum_clique.py boost_adaptbx/graph/tests/tst_graph_metric.py boost_adaptbx/graph/tests/tst_graph_min_cut_max_flow.py boost_adaptbx/graph/tests/tst_graph_minimum_cut_enumerate.py boost_adaptbx/graph/tests/tst_graph_utility.py boost_adaptbx/tests/ boost_adaptbx/tests/tst_boost_thread.py boost_adaptbx/tests/tst_char_array.py boost_adaptbx/tests/tst_deprecation_tools.py boost_adaptbx/tests/tst_libc_backtrace.py boost_adaptbx/tests/tst_optional.py boost_adaptbx/tests/tst_optional_copy.cpp boost_adaptbx/tests/tst_optional_copy.h boost_adaptbx/tests/tst_python_streambuf.py boost_adaptbx/tests/tst_rational.py boost_adaptbx/tests/tst_std_pair.py boost_adaptbx/tests/tst_stderr_stdout.py boost_adaptbx/tests/tst_stdin.py boost_adaptbx/tests/tst_stdout.py boost_adaptbx/tests/tst_string_representation.py boost_adaptbx/tests/tst_swig_args.py boost_adaptbx/tests/tst_tuple.py sent 91,625 bytes received 515 bytes 184,280.00 bytes/sec total size is 89,629 speedup is 0.97 building file list ... done cbflib_adaptbx/detectors/ cbflib_adaptbx/detectors/tst_memory.cpp sent 1,199 bytes received 34 bytes 2,466.00 bytes/sec total size is 967 speedup is 0.78 building file list ... done ccp4io_adaptbx/ ccp4io_adaptbx/tst.py ccp4io_adaptbx/dev/ ccp4io_adaptbx/dev/tst_fftlib.py sent 9,502 bytes received 60 bytes 19,124.00 bytes/sec total size is 9,204 speedup is 0.96 building file list ... done cctbx/adp_restraints/ cctbx/adp_restraints/tst_ext.py cctbx/adptbx/ cctbx/adptbx/boost_python/ cctbx/adptbx/boost_python/tst_adptbx.py cctbx/adptbx/boost_python/tst_hirshfeld.py cctbx/array_family/ cctbx/array_family/boost_python/ cctbx/array_family/boost_python/tst_flex.py cctbx/covariance/ cctbx/covariance/tests/ cctbx/covariance/tests/tst_covariance.py cctbx/crystal/ cctbx/crystal/tst_distance_based_connectivity.py cctbx/crystal/tst_ext.py cctbx/crystal/tst_super_cell.py cctbx/development/ cctbx/development/tst_cns_epsilon.py cctbx/development/tst_cns_hl.py cctbx/dispersion/ cctbx/dispersion/tests/ cctbx/dispersion/tests/tst_kramers_kronig.py cctbx/dispersion/tests/tst_kramers_kronig_helper.py cctbx/dispersion/tests/tst_kramers_kronig_optimize.py cctbx/dmtbx/ cctbx/dmtbx/boost_python/ cctbx/dmtbx/boost_python/tst_dmtbx.py cctbx/eltbx/ cctbx/eltbx/tests/ cctbx/eltbx/tests/tst_attenuation_coefficient.py cctbx/eltbx/tests/tst_chemical_elements.py cctbx/eltbx/tests/tst_covalent_radii.py cctbx/eltbx/tests/tst_formula.py cctbx/eltbx/tests/tst_henke.py cctbx/eltbx/tests/tst_icsd_radii.py cctbx/eltbx/tests/tst_neutron.py cctbx/eltbx/tests/tst_sasaki.py cctbx/eltbx/tests/tst_tiny_pse.py cctbx/eltbx/tests/tst_wavelengths.py cctbx/eltbx/tests/tst_xray_scattering.py cctbx/examples/ cctbx/examples/tst_exp_i_alpha_derivatives.py cctbx/examples/tst_g_exp_i_alpha_derivatives.py cctbx/examples/tst_phase_o_phrenia.py cctbx/examples/tst_space_subgroups.py cctbx/examples/tst_structure_factor_derivatives.py cctbx/examples/tst_structure_factor_derivatives_2.py cctbx/examples/tst_structure_factor_derivatives_3.py cctbx/examples/tst_structure_factor_derivatives_4.py cctbx/examples/merging/ cctbx/examples/merging/tst_permutations.py cctbx/geometry/ cctbx/geometry/tests/ cctbx/geometry/tests/tst_geometry.py cctbx/geometry_restraints/ cctbx/geometry_restraints/tst_angle_derivs.py cctbx/geometry_restraints/tst_ext.py cctbx/geometry_restraints/tst_motif.py cctbx/geometry_restraints/tst_process_nonbonded_proxies.py cctbx/geometry_restraints/tst_proxy_registry.py cctbx/maptbx/ cctbx/maptbx/tst_MapPeakLocator.py cctbx/maptbx/tst_asymmetric_map.py cctbx/maptbx/tst_atom_curves.py cctbx/maptbx/tst_atom_radius_as_central_peak_width.py cctbx/maptbx/tst_bcr.py cctbx/maptbx/tst_ccp.py cctbx/maptbx/tst_get_percentile_cutoffs.py cctbx/maptbx/tst_interpolation.py cctbx/maptbx/tst_interpolation_2.py cctbx/maptbx/tst_loft.py cctbx/maptbx/tst_map_peak_3d_as_2d.py cctbx/maptbx/tst_mask.py cctbx/maptbx/tst_peak_volume_estimate.py cctbx/maptbx/tst_qscore.py cctbx/maptbx/tst_real_space_refinement_simple.py cctbx/maptbx/tst_resolution_from_map_and_model.py cctbx/maptbx/tst_target_and_gradients.py cctbx/maptbx/bcr/ cctbx/maptbx/bcr/tst_adp_refine.py cctbx/maptbx/bcr/tst_example.py cctbx/maptbx/bcr/tst_qmap_02.py cctbx/maptbx/bcr/tst_table.py cctbx/maptbx/bcr/tst_two_atoms.py cctbx/maptbx/bcr/tst_vrm.py cctbx/maptbx/bcr/tst_vrm2.py cctbx/maptbx/boost_python/ cctbx/maptbx/boost_python/tst_maptbx.py cctbx/masks/ cctbx/masks/tests/ cctbx/masks/tests/tst_flood_fill.py cctbx/math/ cctbx/math/boost_python/ cctbx/math/boost_python/tst_math.py cctbx/miller/ cctbx/miller/tst_map_to_asu_isym.py cctbx/miller/tst_reindexing.py cctbx/miller/boost_python/ cctbx/miller/boost_python/tst_miller.py cctbx/multipolar/ cctbx/multipolar/regression/ cctbx/multipolar/regression/tst_multipolar.py cctbx/omz/ cctbx/omz/tst_bfgs.py cctbx/omz/tst_cod.csh cctbx/omz/tst_dev.py cctbx/regression/ cctbx/regression/tst_adp_aniso_restraints.py cctbx/regression/tst_adp_constraints.py cctbx/regression/tst_adp_constraints_cartesian.py cctbx/regression/tst_amplitude_normalisation.py cctbx/regression/tst_change_basis.py cctbx/regression/tst_connectivity.py cctbx/regression/tst_connectivity_allsym.py cctbx/regression/tst_coordination_sequences.py cctbx/regression/tst_create_models_or_maps.py cctbx/regression/tst_crystal.py cctbx/regression/tst_crystal_asu_clusters.py cctbx/regression/tst_crystal_close_packing.py cctbx/regression/tst_diffuse.py cctbx/regression/tst_direct_scaling.py cctbx/regression/tst_direct_space_asu.py cctbx/regression/tst_emma.py cctbx/regression/tst_expand_to_p1.py cctbx/regression/tst_f_model.py cctbx/regression/tst_fast_nv1995.py cctbx/regression/tst_fcalc_fft_stability.py cctbx/regression/tst_find_best_cell.py cctbx/regression/tst_fourier_transform_real_part_at_x.py cctbx/regression/tst_french_wilson.py cctbx/regression/tst_geometry_restraints.py cctbx/regression/tst_geometry_restraints_2.py cctbx/regression/tst_geometry_restraints_lbfgs.py cctbx/regression/tst_grm_modifications.py cctbx/regression/tst_grm_modifications_rm.py cctbx/regression/tst_grm_pickling.py cctbx/regression/tst_grouped_data.py cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py cctbx/regression/tst_krivy_gruber.py cctbx/regression/tst_loc_res.py cctbx/regression/tst_map_is_periodic.py cctbx/regression/tst_map_weights_for_symmetry_summation.py cctbx/regression/tst_maptbx_box.py cctbx/regression/tst_maptbx_mask.py cctbx/regression/tst_maptbx_structure_factors.py cctbx/regression/tst_match_bijvoet_mates.py cctbx/regression/tst_math_module.py cctbx/regression/tst_mem.py cctbx/regression/tst_mem_2.py cctbx/regression/tst_miller.py cctbx/regression/tst_miller_data_manipulation.py cctbx/regression/tst_miller_double_step_filtration.py cctbx/regression/tst_miller_fft_map.py cctbx/regression/tst_miller_lookup_utils.py cctbx/regression/tst_miller_merge_equivalents.py cctbx/regression/tst_miller_statistics.py cctbx/regression/tst_niggli_reduction_cpp.py cctbx/regression/tst_pair_asu_table.py cctbx/regression/tst_pointgroup_tools.py cctbx/regression/tst_prepare_map_for_docking.py cctbx/regression/tst_r_free_utils.py cctbx/regression/tst_reciprocal_space_asu.py cctbx/regression/tst_refine_xray_curvs.py cctbx/regression/tst_reflection_statistics.py cctbx/regression/tst_sampled_model_density.py cctbx/regression/tst_sf_low_res_accuracy.py cctbx/regression/tst_sgtbx.py cctbx/regression/tst_sgtbx_denominators.py cctbx/regression/tst_sgtbx_harker.py cctbx/regression/tst_sgtbx_lattice_symmetry.py cctbx/regression/tst_sgtbx_site_constraints.py cctbx/regression/tst_sgtbx_special_op_simplifier.py cctbx/regression/tst_sgtbx_subgroups.py cctbx/regression/tst_sgtbx_tidy_pickling.py cctbx/regression/tst_show_cosets.py cctbx/regression/tst_space_group_type_tidy_cb_op_t.py cctbx/regression/tst_sphericity.py cctbx/regression/tst_statistics_graphs.py cctbx/regression/tst_triplet_generator.py cctbx/regression/tst_twin_target.py cctbx/regression/tst_wavelength_units.py cctbx/regression/tst_web_change_basis.py cctbx/regression/tst_weighting_schemes.py cctbx/regression/tst_wilson_plot.py cctbx/regression/tst_xray.py cctbx/regression/tst_xray_derivatives.py cctbx/regression/tst_xray_fast_gradients.py cctbx/regression/tst_xray_minimization.py cctbx/regression/tst_xray_minimization_failure.py cctbx/regression/tst_xray_target_functors.py cctbx/sgtbx/ cctbx/sgtbx/boost_python/ cctbx/sgtbx/boost_python/tst_N_fold_rot.py cctbx/sgtbx/boost_python/tst_sgtbx.py cctbx/sgtbx/direct_space_asu/ cctbx/sgtbx/direct_space_asu/proto/ cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp cctbx/sgtbx/direct_space_asu/proto/tst_asu.py cctbx/symmetry_search/ cctbx/symmetry_search/tests/ cctbx/symmetry_search/tests/tst_from_map.py cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py cctbx/translation_search/ cctbx/translation_search/boost_python/ cctbx/translation_search/boost_python/tst_translation_search.py cctbx/uctbx/ cctbx/uctbx/boost_python/ cctbx/uctbx/boost_python/tst_crystal_orientation.py cctbx/uctbx/boost_python/tst_uctbx.py cctbx/uctbx/lrl/ cctbx/uctbx/lrl/tst_match_lattices.py cctbx/xray/ cctbx/xray/boost_python/ cctbx/xray/boost_python/tst_f_model.py cctbx/xray/boost_python/tst_targets_fd.py cctbx/xray/boost_python/tst_xray.py cctbx/xray/observations/ cctbx/xray/observations/tst_observations.py cctbx/xray/targets/ cctbx/xray/targets/tst_r1.py cctbx/xray/targets/tst_shelxl_wght_ls.py sent 2,132,712 bytes received 3,447 bytes 1,424,106.00 bytes/sec total size is 2,118,404 speedup is 0.99 building file list ... done cma_es/ cma_es/tst_cma_es.py sent 3,163 bytes received 38 bytes 6,402.00 bytes/sec total size is 3,008 speedup is 0.94 building file list ... done crys3d/regression/ crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py crys3d/regression/tst_hklinfo.py crys3d/regression/tst_origarrays_from_cif.py crys3d/regression/tst_websocket.py sent 47,910 bytes received 148 bytes 96,116.00 bytes/sec total size is 47,205 speedup is 0.98 building file list ... done sent 600 bytes received 12 bytes 1,224.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done fable/tst_cout.py fable/tst_cout_compile.py fable/tst_equivalence.py fable/tst_ext.py fable/tst_read.py fable/test/ fable/test/tst_command_line.py fable/test/tst_io.py fable/test/tst_separate_files.py fable/test/tst_show_calls.py sent 152,756 bytes received 186 bytes 305,884.00 bytes/sec total size is 151,869 speedup is 0.99 building file list ... done gltbx/tst.py gltbx/tst_ellipsoids.py gltbx/tst_fonts.py gltbx/tst_viewer_utils.py sent 8,482 bytes received 88 bytes 17,140.00 bytes/sec total size is 8,108 speedup is 0.95 building file list ... done iotbx/bioinformatics/ iotbx/bioinformatics/test/ iotbx/bioinformatics/test/tst_alignment_as_hsearch.py iotbx/bioinformatics/test/tst_ebi_wu_blast_xml.py iotbx/bioinformatics/test/tst_local_blast.py iotbx/bioinformatics/test/tst_ncbi_blast_xml.py iotbx/ccp4_map/ iotbx/ccp4_map/tst.py iotbx/ccp4_map/tst_input.map iotbx/cif/ iotbx/cif/tests/ iotbx/cif/tests/tst_citations.py iotbx/cif/tests/tst_cod.py iotbx/cif/tests/tst_crystal_symmetry_builder.py iotbx/cif/tests/tst_geometry.py iotbx/cif/tests/tst_lex_parse_build.py iotbx/cif/tests/tst_miller_array_builder.py iotbx/cif/tests/tst_model.py iotbx/cif/tests/tst_model_builder.py iotbx/cif/tests/tst_parser.py iotbx/cif/tests/tst_restraints.py iotbx/cif/tests/tst_ucif_examples_compilation.py iotbx/cif/tests/tst_validation.py iotbx/cns/ iotbx/cns/tst_cns.py iotbx/detectors/ iotbx/detectors/tst_adsc.py iotbx/detectors/tst_cbf_comp_read_meth.py iotbx/detectors/tst_debug_write.py iotbx/detectors/tst_detectors.py iotbx/detectors/tst_py_cbf.py iotbx/dsn6/ iotbx/dsn6/tst.py iotbx/examples/ iotbx/examples/tst_mtz_free_flipper.py iotbx/examples/pdb_truncate_to_ala/ iotbx/examples/pdb_truncate_to_ala/tst.py iotbx/gui_tools/ iotbx/gui_tools/tst.py iotbx/kriber/ iotbx/kriber/tst_strudat.py iotbx/mtz/ iotbx/mtz/tst.py iotbx/mtz/tst_dano.py iotbx/mtz/tst_ext.py iotbx/mtz/tst_extract_from_symmetry_lib.py iotbx/mtz/tst_miller_dict.py iotbx/mtz/tst_unmerged.py iotbx/pdb/ iotbx/pdb/tst_atom_name_interpretation.py iotbx/pdb/tst_atom_selection.py iotbx/pdb/tst_atom_selection_string.py iotbx/pdb/tst_ext.py iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py iotbx/pdb/tst_hierarchy.py iotbx/pdb/tst_hierarchy_atom_sort.py iotbx/pdb/tst_hierarchy_flip_symmetric.py iotbx/pdb/tst_hierarchy_flip_symmetric_2.py iotbx/pdb/tst_input_pickling.py iotbx/pdb/tst_mmcif.py iotbx/pdb/tst_mmcif_hierarchy.py iotbx/pdb/tst_mmcif_hierarchy_2.py iotbx/pdb/tst_pdb.py iotbx/pdb/tst_read_mtrix_records_from_cif.py iotbx/pdb/tst_rna_dna_atom_names.py iotbx/pdb/tst_secondary_structure.py iotbx/pdb/tst_secondary_structure_2.py iotbx/pdb/tst_tls.py iotbx/pdb/tst_utils.py iotbx/pdb/remediation/ iotbx/pdb/remediation/tst_remediator.py iotbx/regression/ iotbx/regression/tst_add_conformations.py iotbx/regression/tst_all_chain_ids.py iotbx/regression/tst_atom_selections_10k.py iotbx/regression/tst_bioinformatics.py iotbx/regression/tst_box_around_molecule.py iotbx/regression/tst_cif_1.py iotbx/regression/tst_cif_as_pdb_1atom.py iotbx/regression/tst_cli_parser.py iotbx/regression/tst_crystal_symmetry_from_any.py iotbx/regression/tst_csv_utils.py iotbx/regression/tst_data_manager.py iotbx/regression/tst_data_plots.py iotbx/regression/tst_examples.py iotbx/regression/tst_export_scalepack_unmerged.py iotbx/regression/tst_extract_xtal_data.py iotbx/regression/tst_fetch.py iotbx/regression/tst_file_io.py iotbx/regression/tst_file_reader.py iotbx/regression/tst_generate_n_char_string.py iotbx/regression/tst_group_rounding.py iotbx/regression/tst_hierarchy_altlocs.py iotbx/regression/tst_hierarchy_copy_select.py iotbx/regression/tst_hierarchy_forward_compatible_pdb.py iotbx/regression/tst_hierarchy_id_str.py iotbx/regression/tst_hierarchy_long_chain_ids_1.py iotbx/regression/tst_hierarchy_long_resname_1.py iotbx/regression/tst_hierarchy_long_resname_2.py iotbx/regression/tst_hierarchy_long_resname_3.py iotbx/regression/tst_hierarchy_long_resname_4.py iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py iotbx/regression/tst_hierarchy_occupancies_rounding.py iotbx/regression/tst_hierarchy_pdb_v3.py iotbx/regression/tst_lattice_symmetry.py iotbx/regression/tst_map_manager.py iotbx/regression/tst_map_manager_2.py iotbx/regression/tst_map_manager_wrapping.py iotbx/regression/tst_map_model_manager.py iotbx/regression/tst_map_model_manager_2.py iotbx/regression/tst_map_model_manager_3.py iotbx/regression/tst_map_model_manager_4.py iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py iotbx/regression/tst_map_model_manager_call_consistency.py iotbx/regression/tst_map_model_manager_cif.py iotbx/regression/tst_map_model_manager_external_sharpening_7.py iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py iotbx/regression/tst_map_model_manager_local_resolution_10.py iotbx/regression/tst_map_model_manager_model_sharpening_5.py iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py iotbx/regression/tst_map_model_manager_tls_from_map_8.py iotbx/regression/tst_map_tools.py iotbx/regression/tst_merging_statistics.py iotbx/regression/tst_miller_sort_asu.py iotbx/regression/tst_mmcif_input.py iotbx/regression/tst_mmcif_multimodel.py iotbx/regression/tst_mmcif_segids.py iotbx/regression/tst_mmcif_to_from_hierarchy.py iotbx/regression/tst_mrc_io.py iotbx/regression/tst_mtz_as_cif.py iotbx/regression/tst_patterson.py iotbx/regression/tst_pdb_as_cif.py iotbx/regression/tst_pdb_as_fasta.py iotbx/regression/tst_pdb_cif_cells.py iotbx/regression/tst_pdb_cif_inputs.py iotbx/regression/tst_pdb_link_records.py iotbx/regression/tst_pdbx_mmcif_tutorial.py iotbx/regression/tst_phases.py iotbx/regression/tst_phil.py iotbx/regression/tst_poscar.py iotbx/regression/tst_reflection_file_editor.py iotbx/regression/tst_reflection_file_reader.py iotbx/regression/tst_reflection_file_utils.py iotbx/regression/tst_reflection_statistics.py iotbx/regression/tst_reindex.py iotbx/regression/tst_restraints_merge.py iotbx/regression/tst_selected_hierarchy_flip.py iotbx/regression/tst_show_systematic_absences.py iotbx/regression/tst_simple_map_coefficients.py iotbx/regression/tst_simple_parser.py iotbx/regression/tst_sort_atoms.py iotbx/regression/tst_split_data_cif.py iotbx/regression/tst_split_models.py iotbx/regression/tst_symmetry.py iotbx/regression/tst_text_detection.py iotbx/regression/tst_wildcard.py iotbx/regression/tst_xray_scale.py iotbx/regression/ncs/ iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py iotbx/regression/ncs/tst_ncs.py iotbx/regression/ncs/tst_ncs_groups_preprocessing.py iotbx/regression/ncs/tst_ncs_input.py iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py iotbx/regression/ncs/tst_ncs_reordered_chains.py iotbx/regression/ncs/tst_ncs_search_broken_chain.py iotbx/regression/ncs/tst_ncs_search_ligs.py iotbx/regression/ncs/tst_ncs_search_shortcut_1.py iotbx/regression/ncs/tst_ncs_user_selections.py iotbx/regression/ncs/tst_ncs_without_validation.py iotbx/regression/secondary_structure/ iotbx/regression/secondary_structure/tst_annotation.py iotbx/regression/secondary_structure/tst_annotation_long.py iotbx/regression/secondary_structure/tst_sheet.py iotbx/scalepack/ iotbx/scalepack/tst_merge.py iotbx/scalepack/tst_no_merge_original_index.py iotbx/shelx/ iotbx/shelx/tst_fvar_encoding.py iotbx/shelx/tst_hklf.py iotbx/shelx/tst_lex_parse_build.py iotbx/shelx/tst_writer.py iotbx/xds/ iotbx/xds/tests/ iotbx/xds/tests/tst_integrate_hkl.py iotbx/xds/tests/tst_spots_xds.py iotbx/xds/tests/tst_xds_inp.py iotbx/xds/tests/tst_xparm.py iotbx/xplor/ iotbx/xplor/tst_xplormap.py sent 2,627,013 bytes received 3,277 bytes 5,260,580.00 bytes/sec total size is 2,614,058 speedup is 0.99 building file list ... done libtbx/tst_add_docstrings_with_ai.py libtbx/tst_binary_search.py libtbx/tst_citation_encoding.py libtbx/tst_citations.py libtbx/tst_conda_dispatcher.py libtbx/tst_containers.py libtbx/tst_dlite.py libtbx/tst_easy_mp.py libtbx/tst_easy_mp_multicore.py libtbx/tst_easy_mp_state.py libtbx/tst_easy_pickle.py libtbx/tst_find_unused_imports.py libtbx/tst_fully_buffered_timeout.py libtbx/tst_guided_coding.py libtbx/tst_mahalanobis.py libtbx/tst_math_utils.py libtbx/tst_object_oriented_patterns.py libtbx/tst_path.py libtbx/tst_program_template.py libtbx/tst_python_code_parsing.py libtbx/tst_representation.py libtbx/tst_run_tests_parallel_retry.py libtbx/tst_run_tests_parallel_unique_dirs.py libtbx/tst_runtime_utils.py libtbx/tst_scheduling.py libtbx/tst_str_utils.py libtbx/tst_t96_roster.py libtbx/tst_thread_utils.py libtbx/tst_topological_sort.py libtbx/tst_utils.py libtbx/tst_version.py libtbx/tst_word_index_generator.py libtbx/tst_xmlrpc_utils.py libtbx/guided_coding/ libtbx/guided_coding/tests/ libtbx/guided_coding/tests/tst_review_bundle_v20.py libtbx/guided_coding/tests/tst_screen_check_v20.py libtbx/jobs/ libtbx/jobs/tst_batch.py libtbx/jobs/tst_local.py libtbx/jobs/tst_manager.py libtbx/jobs/tst_slurm.py libtbx/langchain/ libtbx/langchain/agent/ libtbx/langchain/agent/tst_agent_enhancements.py libtbx/langchain/tests/ libtbx/langchain/tests/tst_abort_message_all_stops.py libtbx/langchain/tests/tst_action_item_1.py libtbx/langchain/tests/tst_advice_preprocessing.py libtbx/langchain/tests/tst_after_program_fill_from_raw.py libtbx/langchain/tests/tst_after_program_prompt.py libtbx/langchain/tests/tst_agent_build_info.py libtbx/langchain/tests/tst_analysis_request.py libtbx/langchain/tests/tst_api_schema.py libtbx/langchain/tests/tst_audit_fixes.py libtbx/langchain/tests/tst_autobuild_hl_recovery.py libtbx/langchain/tests/tst_autobuild_sequence_waiver.py libtbx/langchain/tests/tst_autosol_bugs.py libtbx/langchain/tests/tst_backward_compat.py libtbx/langchain/tests/tst_best_files_tracker.py libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py libtbx/langchain/tests/tst_canary.py libtbx/langchain/tests/tst_cc_key_extraction.py libtbx/langchain/tests/tst_classify_mtz_type_001.py libtbx/langchain/tests/tst_command_builder.py libtbx/langchain/tests/tst_contract_compliance.py libtbx/langchain/tests/tst_copies_tracking.py libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py libtbx/langchain/tests/tst_cryoem_stop_validation.py libtbx/langchain/tests/tst_data_input_filter.py libtbx/langchain/tests/tst_decision_flow.py libtbx/langchain/tests/tst_default_models.py libtbx/langchain/tests/tst_density_modify_experiment_type.py libtbx/langchain/tests/tst_dependencies.py libtbx/langchain/tests/tst_diagnosed_failure_stop.py libtbx/langchain/tests/tst_diagnostic_messages.py libtbx/langchain/tests/tst_directive_extractor.py libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py libtbx/langchain/tests/tst_directive_extractor_grounding.py libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py libtbx/langchain/tests/tst_directive_layer_diagnostics.py libtbx/langchain/tests/tst_directive_validation.py libtbx/langchain/tests/tst_directive_validator.py libtbx/langchain/tests/tst_directive_validator_typo_hints.py libtbx/langchain/tests/tst_directives_integration.py libtbx/langchain/tests/tst_display_data_model.py libtbx/langchain/tests/tst_dock_and_stop.py libtbx/langchain/tests/tst_docs_tools.py libtbx/langchain/tests/tst_dry_run.py libtbx/langchain/tests/tst_error_analyzer.py libtbx/langchain/tests/tst_error_classifier.py libtbx/langchain/tests/tst_event_formatter_file_categories.py libtbx/langchain/tests/tst_event_system.py libtbx/langchain/tests/tst_explanation_prompts.py libtbx/langchain/tests/tst_extended_stop_phrasings.py libtbx/langchain/tests/tst_extract_raw_advice.py libtbx/langchain/tests/tst_extraction_failure_visibility.py libtbx/langchain/tests/tst_fabricated_stop_condition.py libtbx/langchain/tests/tst_file_categorization.py libtbx/langchain/tests/tst_file_categorizer.py libtbx/langchain/tests/tst_file_encoding.py libtbx/langchain/tests/tst_file_utils.py libtbx/langchain/tests/tst_fix_verification.py libtbx/langchain/tests/tst_force_no_ai_server.py libtbx/langchain/tests/tst_gate_evaluator.py libtbx/langchain/tests/tst_general_resolver.py libtbx/langchain/tests/tst_grounding_stop_after_requested.py libtbx/langchain/tests/tst_h17_strip_executor.py libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py libtbx/langchain/tests/tst_hardcoded_cleanup.py libtbx/langchain/tests/tst_history_analysis.py libtbx/langchain/tests/tst_hypothesis_evaluator.py libtbx/langchain/tests/tst_initialize_plan_smoke.py libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py libtbx/langchain/tests/tst_integration.py libtbx/langchain/tests/tst_intent_classifier.py libtbx/langchain/tests/tst_langchain_tools.py libtbx/langchain/tests/tst_ligand_workflow_restart.py libtbx/langchain/tests/tst_ligandfit_patterns.py libtbx/langchain/tests/tst_llm_unavailable_notice.py libtbx/langchain/tests/tst_log_extractor.py libtbx/langchain/tests/tst_log_structure_extractor.py libtbx/langchain/tests/tst_metric_patterns.py libtbx/langchain/tests/tst_metrics_analyzer.py libtbx/langchain/tests/tst_mode_isolation.py libtbx/langchain/tests/tst_mtz_crosscheck.py libtbx/langchain/tests/tst_mtz_phases_session_blocking.py libtbx/langchain/tests/tst_n_bugs.py libtbx/langchain/tests/tst_new_programs.py libtbx/langchain/tests/tst_obs_labels_auto_fill.py libtbx/langchain/tests/tst_old_client_compat.py libtbx/langchain/tests/tst_optional_dep_resilience.py libtbx/langchain/tests/tst_pattern_manager.py libtbx/langchain/tests/tst_perceive_stop_checks.py libtbx/langchain/tests/tst_phase0_static_audit.py libtbx/langchain/tests/tst_phase1_contract_gaps.py libtbx/langchain/tests/tst_phase2_path_consistency.py libtbx/langchain/tests/tst_phase2b_activation.py libtbx/langchain/tests/tst_phase3_bug5.py libtbx/langchain/tests/tst_phase3_serialization_symmetry.py libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py libtbx/langchain/tests/tst_phase4_history_flags.py libtbx/langchain/tests/tst_phase5_error_classification.py libtbx/langchain/tests/tst_phase6_category_consumer.py libtbx/langchain/tests/tst_phase7_routing_simulation.py libtbx/langchain/tests/tst_phase8_command_building.py libtbx/langchain/tests/tst_phase9_llm_perturbation.py libtbx/langchain/tests/tst_phaser_multimodel.py libtbx/langchain/tests/tst_phil_namespace_cleaner.py libtbx/langchain/tests/tst_phil_validation.py libtbx/langchain/tests/tst_placement_skip_rebuild.py libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py libtbx/langchain/tests/tst_plan_generator.py libtbx/langchain/tests/tst_plan_lead_program_offer.py libtbx/langchain/tests/tst_plan_schema.py libtbx/langchain/tests/tst_planning_framework.py libtbx/langchain/tests/tst_portkey_embedding_model.py libtbx/langchain/tests/tst_predict_and_build_no_ncs.py libtbx/langchain/tests/tst_preprocessor_file_override.py libtbx/langchain/tests/tst_program_identity.py libtbx/langchain/tests/tst_program_registration.py libtbx/langchain/tests/tst_program_requirements.py libtbx/langchain/tests/tst_protocol_version.py libtbx/langchain/tests/tst_provider_error_classification.py libtbx/langchain/tests/tst_provider_lock.py libtbx/langchain/tests/tst_raw_advice_scanner.py libtbx/langchain/tests/tst_reactive_deviation_hold.py libtbx/langchain/tests/tst_reasoning_command_divergence.py libtbx/langchain/tests/tst_rebuild_template_selection.py libtbx/langchain/tests/tst_refine_final_rfree.py libtbx/langchain/tests/tst_report_verifier.py libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py libtbx/langchain/tests/tst_resume_reopen_stages.py libtbx/langchain/tests/tst_rfree_flags_missing.py libtbx/langchain/tests/tst_rfree_generate_guard.py libtbx/langchain/tests/tst_rfree_lock_reconciliation.py libtbx/langchain/tests/tst_rfree_resolution_stop.py libtbx/langchain/tests/tst_safe_float_consolidation.py libtbx/langchain/tests/tst_sanity_checker.py libtbx/langchain/tests/tst_scenario_tracer.py libtbx/langchain/tests/tst_sequence_only_routing.py libtbx/langchain/tests/tst_session_directives.py libtbx/langchain/tests/tst_session_summary.py libtbx/langchain/tests/tst_session_tools.py libtbx/langchain/tests/tst_settings_list_coercion.py libtbx/langchain/tests/tst_shared_code_imports.py libtbx/langchain/tests/tst_silent_stop_abort_messages.py libtbx/langchain/tests/tst_simple_extractor_validation.py libtbx/langchain/tests/tst_skip_promotion.py libtbx/langchain/tests/tst_skip_to_program.py libtbx/langchain/tests/tst_solve_action_keywords.py libtbx/langchain/tests/tst_space_group_validation.py libtbx/langchain/tests/tst_spurious_stop_after_requested.py libtbx/langchain/tests/tst_standalone_consistency.py libtbx/langchain/tests/tst_state_serialization.py libtbx/langchain/tests/tst_step1f_single_emit.py libtbx/langchain/tests/tst_stop_condition_false_positive.py libtbx/langchain/tests/tst_stop_condition_fix.py libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py libtbx/langchain/tests/tst_stop_reason_codes.py libtbx/langchain/tests/tst_stop_reason_prompt.py libtbx/langchain/tests/tst_strategy_memory.py libtbx/langchain/tests/tst_structure_model.py libtbx/langchain/tests/tst_summary_display.py libtbx/langchain/tests/tst_summary_file.py libtbx/langchain/tests/tst_supported_providers_single_source.py libtbx/langchain/tests/tst_template.py libtbx/langchain/tests/tst_thinking_agent.py libtbx/langchain/tests/tst_thinking_defense.py libtbx/langchain/tests/tst_transport.py libtbx/langchain/tests/tst_transport_surfaces.py libtbx/langchain/tests/tst_user_advice_filter.py libtbx/langchain/tests/tst_utils.py libtbx/langchain/tests/tst_v112_13_fixes.py libtbx/langchain/tests/tst_v120_providers.py libtbx/langchain/tests/tst_validate_file_overrides.py libtbx/langchain/tests/tst_validate_step_after_program_guard.py libtbx/langchain/tests/tst_validation_history.py libtbx/langchain/tests/tst_workflow_complete_stop.py libtbx/langchain/tests/tst_workflow_state.py libtbx/langchain/tests/tst_yaml_config.py libtbx/langchain/tests/tst_yaml_tools.py libtbx/langchain/tests/llm/ libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py libtbx/langchain/tests/llm/tst_c1_raw_authority.py libtbx/langchain/tests/llm/tst_directive_extraction.py libtbx/langchain/tests/llm/tst_framework_self.py libtbx/langchain/tests/llm/tst_planning.py libtbx/phil/ libtbx/phil/tst.py libtbx/phil/tst_experimental.py libtbx/phil/tst_interface.py libtbx/phil/tst_tokenizer.py libtbx/queuing_system_utils/ libtbx/queuing_system_utils/tst.py sent 4,455,408 bytes received 4,413 bytes 8,919,642.00 bytes/sec total size is 4,436,722 speedup is 0.99 building file list ... done mmtbx/atomic_environment_vectors/ mmtbx/atomic_environment_vectors/tst.py mmtbx/building/ mmtbx/building/tst_extend_sidechains.py mmtbx/building/tst_extend_sidechains_2.py mmtbx/building/ligands/ mmtbx/building/ligands/tst_00.py mmtbx/building/ligands/tst_00_mmtbx_building_ligands.map mmtbx/bulk_solvent/ mmtbx/bulk_solvent/tst_aniso_scaler.py mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py mmtbx/bulk_solvent/tst_flat_nonuniform.py mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py mmtbx/bulk_solvent/tst_mosaic.py mmtbx/bulk_solvent/tst_scaler.py mmtbx/chemical_components/ mmtbx/chemical_components/tst.py mmtbx/conformation_dependent_library/ mmtbx/conformation_dependent_library/tst_cdl.py mmtbx/conformation_dependent_library/tst_cdl_esd.py mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py mmtbx/conformation_dependent_library/tst_enol_peptide.py mmtbx/conformation_dependent_library/tst_hpdl.py mmtbx/conformation_dependent_library/tst_mcl_01.py mmtbx/conformation_dependent_library/tst_mcl_02.py mmtbx/conformation_dependent_library/tst_mcl_03.py mmtbx/conformation_dependent_library/tst_multi_residue_rna.py mmtbx/conformation_dependent_library/tst_mutli_residue.py mmtbx/conformation_dependent_library/tst_omega_cdl.py mmtbx/conformation_dependent_library/tst_pH_mechanism.py mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py mmtbx/conformation_dependent_library/tst_rdl.py mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py mmtbx/density_modification/ mmtbx/density_modification/tst_density_modification.py mmtbx/disorder/ mmtbx/disorder/tst.py mmtbx/disorder/tst_analyze_model.py mmtbx/disorder/tst_backbone.py mmtbx/dynamics/ mmtbx/dynamics/tst_cartesian_dynamics.py mmtbx/dynamics/tst_sa.py mmtbx/geometry/ mmtbx/geometry/tests/ mmtbx/geometry/tests/tst_altloc.py mmtbx/geometry/tests/tst_asa.py mmtbx/geometry/tests/tst_clash.py mmtbx/geometry/tests/tst_indexing.py mmtbx/geometry/tests/tst_shared_types.py mmtbx/geometry/tests/tst_sphere_surface_sampling.py mmtbx/geometry/tests/tst_topology.py mmtbx/geometry_restraints/ mmtbx/geometry_restraints/tst_c_beta_restraints.py mmtbx/geometry_restraints/tst_geo_file_parsing.py mmtbx/geometry_restraints/tst_manager.py mmtbx/geometry_restraints/tst_orca_manager.py mmtbx/geometry_restraints/tst_ramachandran.py mmtbx/geometry_restraints/tst_reference_coordinate.py mmtbx/geometry_restraints/tst_reference_coordinate2.py mmtbx/geometry_restraints/tst_replace_in_place.py mmtbx/geometry_restraints/tst_xtb_manager.py mmtbx/geometry_restraints/torsion_restraints/ mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py mmtbx/hydrogens/ mmtbx/hydrogens/tst.py mmtbx/hydrogens/tst_add_hydrogen.py mmtbx/hydrogens/tst_add_hydrogen_1.py mmtbx/hydrogens/tst_add_hydrogen_10.py 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mmtbx/hydrogens/tst_parameterization_9.py mmtbx/hydrogens/tst_riding_coefficients.py mmtbx/hydrogens/tst_riding_fd_1.py mmtbx/hydrogens/tst_riding_fd_2.py mmtbx/hydrogens/tst_riding_fd_3.py mmtbx/hydrogens/tst_riding_fd_4.py mmtbx/hydrogens/tst_riding_fd_5.py mmtbx/hydrogens/tst_riding_manager.py mmtbx/hydrogens/tst_riding_minimize.py mmtbx/hydrogens/tst_validate_H.py mmtbx/ias/ mmtbx/ias/tst_ias.py mmtbx/idealized_aa_residues/ mmtbx/idealized_aa_residues/tst.py mmtbx/ions/ mmtbx/ions/tst_environment.py mmtbx/ions/tst_geometries.py mmtbx/ions/tst_parameters.py mmtbx/ions/tst_pick_approx_zn.py mmtbx/ions/tst_pick_ca.py mmtbx/ions/tst_pick_ca_svm.py mmtbx/ions/tst_pick_k.py mmtbx/ions/tst_pick_mg.py mmtbx/ions/tst_pickle.py mmtbx/ions/tst_symmetry_axis.py mmtbx/ions/tst_utils.py mmtbx/ions/tst_validate_ca.py mmtbx/ions/tst_validate_mg.py mmtbx/ions/svm/ mmtbx/ions/svm/tst_classifier_01.py mmtbx/ions/svm/tst_classifier_02.py mmtbx/kinemage/ mmtbx/kinemage/tst_validation.py mmtbx/ligands/ mmtbx/ligands/tst_electron_scripting.py mmtbx/ligands/tst_ready_set_utils.py mmtbx/ligands/tst_xtal_screens.py mmtbx/maps/ mmtbx/maps/tst_composite_omit_map.py mmtbx/maps/tst_composite_omit_map_2.py mmtbx/maps/tst_composite_omit_map_3.py mmtbx/maps/tst_correlation.py mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py mmtbx/masks/ mmtbx/masks/tst_asu_mask.py mmtbx/masks/tst_mask.cpp mmtbx/masks/tst_masks.py mmtbx/max_lik/ mmtbx/max_lik/tst_max_lik.py mmtbx/max_lik/tst_maxlik.py mmtbx/monomer_library/ mmtbx/monomer_library/tst_all_cif_files.py mmtbx/monomer_library/tst_carbo_linking.py mmtbx/monomer_library/tst_chg.py mmtbx/monomer_library/tst_cif_triage.py mmtbx/monomer_library/tst_cif_types.py mmtbx/monomer_library/tst_correct_hydrogens.py mmtbx/monomer_library/tst_deuterium_terminii.py mmtbx/monomer_library/tst_geo_reduce_for_tardy.py mmtbx/monomer_library/tst_glyco_coordination.py mmtbx/monomer_library/tst_glyco_hand.py mmtbx/monomer_library/tst_idealized_aa.py mmtbx/monomer_library/tst_iron_sulfur_clusters.py mmtbx/monomer_library/tst_linking.py mmtbx/monomer_library/tst_metal_coordination.py mmtbx/monomer_library/tst_motif.py mmtbx/monomer_library/tst_neutron_distance.py mmtbx/monomer_library/tst_paral_geo.py mmtbx/monomer_library/tst_pdb_interpretation.py mmtbx/monomer_library/tst_pdb_interpretation_2.py mmtbx/monomer_library/tst_pdb_interpretation_3.py mmtbx/monomer_library/tst_pdb_interpretation_4.py mmtbx/monomer_library/tst_pdb_interpretation_5.py mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py mmtbx/monomer_library/tst_protein_interpretation.py mmtbx/monomer_library/tst_rna_dna_interpretation.py mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py mmtbx/monomer_library/tst_rotamer_utils.py mmtbx/monomer_library/tst_selection.py mmtbx/monomer_library/tst_server.py mmtbx/monomer_library/tst_superpose_ideal.py mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py mmtbx/monomer_library/tst_user_supplied_library.py mmtbx/nci/ mmtbx/nci/tst_hbond.py mmtbx/pair_interaction/ mmtbx/pair_interaction/tst_00.py mmtbx/pair_interaction/tst_01.py mmtbx/pair_interaction/tst_02.py mmtbx/pair_interaction/tst_03.py mmtbx/pair_interaction/tst_04.py mmtbx/pair_interaction/tst_05.py mmtbx/polygon/ mmtbx/polygon/tst.py mmtbx/polygon/tst_gui.py mmtbx/polygon/tst_polygon_data.py mmtbx/probe/ mmtbx/probe/tst_mmtbx_probe_ext.py mmtbx/probe/tst_probe.cpp mmtbx/real_space/ mmtbx/real_space/tst.py mmtbx/reduce/ mmtbx/reduce/tst_mmtbx_reduce_ext.py mmtbx/refinement/ mmtbx/refinement/tst_anomalous_scatterer_groups.py mmtbx/refinement/tst_fit_rotamers.py mmtbx/refinement/tst_group.py mmtbx/refinement/tst_group_2.py mmtbx/refinement/tst_misc.py mmtbx/refinement/tst_occupancy_selections.py mmtbx/refinement/tst_real_space_simple.py mmtbx/refinement/tst_refinement_flags.py mmtbx/refinement/tst_rigid_body.py mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py mmtbx/refinement/tst_select_best_starting_model.py mmtbx/refinement/real_space/ mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py mmtbx/refinement/real_space/tst_fit_residue_0.py mmtbx/refinement/real_space/tst_fit_residue_0H.py mmtbx/refinement/real_space/tst_fit_residue_1.py mmtbx/refinement/real_space/tst_fit_residue_1H.py mmtbx/refinement/real_space/tst_fit_residue_2.py mmtbx/refinement/real_space/tst_fit_residue_3.py mmtbx/refinement/real_space/tst_fit_residue_4.py mmtbx/refinement/real_space/tst_fit_residue_5.py mmtbx/refinement/real_space/tst_fit_residue_6.py mmtbx/refinement/real_space/tst_fit_residue_7.py mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py mmtbx/refinement/real_space/tst_fit_residues_1.py mmtbx/refinement/real_space/tst_fit_residues_1H.py mmtbx/refinement/real_space/tst_fit_residues_2.py mmtbx/refinement/real_space/tst_fit_residues_3.py mmtbx/refinement/real_space/tst_fit_residues_4.py mmtbx/refinement/real_space/tst_fit_residues_5.py mmtbx/refinement/real_space/tst_fit_residues_6.py mmtbx/refinement/real_space/tst_fit_residues_selection.py mmtbx/refinement/real_space/tst_fit_water.py mmtbx/refinement/real_space/tst_individual_sites_1.py mmtbx/refinement/real_space/tst_individual_sites_2.py mmtbx/refinement/real_space/tst_individual_sites_3.py mmtbx/refinement/real_space/tst_monitor.py mmtbx/refinement/real_space/tst_rigid_body.py mmtbx/refinement/real_space/tst_weight.py mmtbx/regression/tst_add_arrows_on_plot.py mmtbx/regression/tst_add_h_to_water.py mmtbx/regression/tst_adp_restraints.py mmtbx/regression/tst_alignment.py mmtbx/regression/tst_altloc_chain_break.py mmtbx/regression/tst_altloc_remediate.py mmtbx/regression/tst_angle.py mmtbx/regression/tst_anomalous_substructure.py mmtbx/regression/tst_apply_cif_restraints.py mmtbx/regression/tst_arginine_geometry.py mmtbx/regression/tst_cc_star.py mmtbx/regression/tst_chain_comparison.py mmtbx/regression/tst_chain_comparison_cif.py mmtbx/regression/tst_cif_as_mtz_wavelengths.py mmtbx/regression/tst_cis_trans_peptide_link.py mmtbx/regression/tst_clashes.py mmtbx/regression/tst_command_line_input.py mmtbx/regression/tst_domains_from_pae.py mmtbx/regression/tst_domains_from_pae_cif.py mmtbx/regression/tst_dynamics_cli.py mmtbx/regression/tst_examples.py mmtbx/regression/tst_find_ncs.py mmtbx/regression/tst_find_ss_structure.py mmtbx/regression/tst_find_ss_structure_cif.py mmtbx/regression/tst_flipping_his.py mmtbx/regression/tst_fmodel.py mmtbx/regression/tst_fmodel_2.py mmtbx/regression/tst_fmodel_and_dm.py mmtbx/regression/tst_fmodel_fd.py mmtbx/regression/tst_fmodel_misc.py mmtbx/regression/tst_fmodel_no_cryst1.py mmtbx/regression/tst_geo_min_restraints_phil.py mmtbx/regression/tst_geometry_minimization.py mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py mmtbx/regression/tst_holton_geometry_validation.py mmtbx/regression/tst_isomorphous_difference_misc.py mmtbx/regression/tst_ligand_interactions.py mmtbx/regression/tst_ligand_ncs.py mmtbx/regression/tst_loop_closure.py mmtbx/regression/tst_lrv.py mmtbx/regression/tst_map_model_cc.py mmtbx/regression/tst_map_type_parser.py mmtbx/regression/tst_maps_misc.py mmtbx/regression/tst_metal_link_1.py mmtbx/regression/tst_minimize_chain.py mmtbx/regression/tst_ml_estimate.py mmtbx/regression/tst_mmtbx_refinement_wrappers.py mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py mmtbx/regression/tst_model_map.py mmtbx/regression/tst_model_vs_map.py mmtbx/regression/tst_model_vs_sequence.py mmtbx/regression/tst_models_to_from_chains.py mmtbx/regression/tst_msa.py mmtbx/regression/tst_mtz2map.py mmtbx/regression/tst_multi_residue_class.py mmtbx/regression/tst_ordered_solvent.py mmtbx/regression/tst_origin_ids.py mmtbx/regression/tst_pdbtools.py mmtbx/regression/tst_polder.py mmtbx/regression/tst_polder_1.py mmtbx/regression/tst_polder_2.py mmtbx/regression/tst_polder_3.py mmtbx/regression/tst_polder_4.py mmtbx/regression/tst_polder_box.py mmtbx/regression/tst_polder_ccs.py mmtbx/regression/tst_probe.py mmtbx/regression/tst_process_predicted_model.py mmtbx/regression/tst_process_predicted_model_cif.py mmtbx/regression/tst_prune_model.py mmtbx/regression/tst_psi_phi_extraction.py mmtbx/regression/tst_rank_scale_map.py mmtbx/regression/tst_rdkit_utils_fragmentation.py mmtbx/regression/tst_rdkit_utils_molecule.py mmtbx/regression/tst_real_space_correlation.py mmtbx/regression/tst_reduce.py mmtbx/regression/tst_reduce2_no_symmetry.py mmtbx/regression/tst_reduce_cryoem_resolution.py mmtbx/regression/tst_reduce_custom_bond.py mmtbx/regression/tst_reduce_switch.py mmtbx/regression/tst_reduce_timeout.py mmtbx/regression/tst_refine_anomalous_substructure.py mmtbx/regression/tst_regularize_from_pdb.py mmtbx/regression/tst_regularize_from_pdb_cif.py mmtbx/regression/tst_ribbons.py mmtbx/regression/tst_rigid_bond_test.py mmtbx/regression/tst_ringer.py mmtbx/regression/tst_sampled_model_density.py mmtbx/regression/tst_scattering_table.py mmtbx/regression/tst_scattering_type_registry.py mmtbx/regression/tst_schrodinger_interface.py mmtbx/regression/tst_sequence_validation.py mmtbx/regression/tst_sort_hetatms.py mmtbx/regression/tst_special_term_at_end.py mmtbx/regression/tst_ss_validation_long_chainids.py mmtbx/regression/tst_statistics_output.py mmtbx/regression/tst_superpose.py mmtbx/regression/tst_table_one.py mmtbx/regression/tst_utils.py mmtbx/regression/tst_validate_ligands.py mmtbx/regression/tst_validate_ligands_2.py mmtbx/regression/tst_validate_ligands_3.py mmtbx/regression/tst_validate_ligands_4.py mmtbx/regression/tst_validation_summary.py mmtbx/regression/discamb/ mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_1.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_2.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_3.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_4.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_5.py mmtbx/regression/discamb/tst_IAM_gradients_1.py mmtbx/regression/discamb/tst_fmodel_fd_discamb.py mmtbx/regression/discamb/tst_fmodel_fd_discamb_taam.py mmtbx/regression/discamb/tst_fmodel_fd_discamb_taam_tyr.py mmtbx/regression/discamb/tst_olex2_vs_pydiscamb_TAAM_1.py mmtbx/regression/discamb/tst_olex2_vs_pydiscamb_TAAM_2.py mmtbx/regression/fix_cablam/ mmtbx/regression/fix_cablam/tst_basic_cl_operations.py mmtbx/regression/fix_cablam/tst_insertion_codes.py mmtbx/regression/fix_cablam/tst_one_resid_rotation.py mmtbx/regression/fix_cablam/tst_single_outliers_surroundings.py mmtbx/regression/model/ mmtbx/regression/model/tst_model.py mmtbx/regression/model/tst_model_2.py mmtbx/regression/model/tst_model_biomt_mtrix.py mmtbx/regression/model/tst_model_biomt_mtrix_2.py mmtbx/regression/model/tst_model_cart_ref_restraints.py mmtbx/regression/model/tst_model_dedeuterate.py mmtbx/regression/model/tst_model_get_vdw_radii.py mmtbx/regression/model/tst_model_merge.py mmtbx/regression/model/tst_model_mtrix.py mmtbx/regression/model/tst_model_ncs.py mmtbx/regression/model/tst_model_neutralize_scatterers.py mmtbx/regression/model/tst_model_pairs_within.py mmtbx/regression/model/tst_model_ramachandran.py mmtbx/regression/model/tst_model_remove_alternative_conformations.py mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py mmtbx/regression/model/tst_model_symmetry.py mmtbx/regression/model/tst_model_tors_ref_restraints.py mmtbx/regression/model/tst_model_utils_merge_models.py mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py mmtbx/regression/model_idealization/ mmtbx/regression/model_idealization/tst_ext_map_01.py mmtbx/regression/model_idealization/tst_ligands.py mmtbx/regression/model_idealization/tst_nomap_01.py mmtbx/regression/model_idealization/tst_nomap_02.py mmtbx/regression/model_idealization/tst_nomap_03.py mmtbx/regression/model_idealization/tst_nomap_04.py mmtbx/regression/model_idealization/tst_with_mtz.py mmtbx/regression/model_idealization/tst_withmap_01.py mmtbx/regression/model_idealization/tst_withmap_02.py mmtbx/regression/model_idealization/tst_withmap_03.py mmtbx/regression/model_idealization/tst_withmap_04.py mmtbx/regression/model_idealization/tst_withmap_05.py mmtbx/regression/model_idealization/tst_withmap_06.py mmtbx/regression/mtz/ mmtbx/regression/mtz/tst_xtriage_fmodel.mtz mmtbx/regression/ncs/ mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py mmtbx/regression/ncs/tst_minimization_ncs_constraints.py mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py mmtbx/regression/ncs/tst_ncs_restraints_group_list.py mmtbx/regression/ncs/tst_ncs_search.py mmtbx/regression/ncs/tst_ncs_search_flips.py mmtbx/regression/ncs/tst_ncs_utils.py mmtbx/regression/ncs/tst_restraints.py mmtbx/regression/pdb_interpretation/ mmtbx/regression/pdb_interpretation/tst_custom_nb_sym_excl.py mmtbx/regression/pdb_interpretation/tst_edits.py mmtbx/regression/pdb_interpretation/tst_edits_actions.py mmtbx/regression/pdb_interpretation/tst_tardy_geo.py mmtbx/regression/pdb_interpretation/tst_using_ncs_1.py mmtbx/regression/pdb_interpretation/tst_using_ncs_2.py mmtbx/regression/real_space_refine_chain/ mmtbx/regression/real_space_refine_chain/tst_00.py mmtbx/regression/real_space_refine_chain/tst_01.py mmtbx/regression/tls/ mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py mmtbx/regression/tls/tst_get_t_scheme.py mmtbx/regression/tls/tst_tls.py mmtbx/regression/tls/tst_tls_analysis.py mmtbx/regression/tls/tst_tls_as_xyz.py mmtbx/regression/tls/tst_tls_optimise_amplitudes.py mmtbx/regression/tls/tst_tls_refinement_fft.py mmtbx/regression/tls/tst_tls_utils.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py mmtbx/regression/tncs/ mmtbx/regression/tncs/tst_epsfac_and_radius.py mmtbx/regression/tncs/tst_fd.py mmtbx/regression/tncs/tst_moments.py mmtbx/regression/tncs/tst_pair.py mmtbx/ringer/ mmtbx/ringer/tst_em_rscc.py mmtbx/ringer/tst_emringer.py mmtbx/rotamer/ mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py mmtbx/rotamer/tst_rotamer_eval.py mmtbx/rsr/ mmtbx/rsr/tst.py mmtbx/scaling/ mmtbx/scaling/tst_absences.py mmtbx/scaling/tst_bayesian_estimator.py mmtbx/scaling/tst_massage_data.py mmtbx/scaling/tst_mean_f_rms_f.py mmtbx/scaling/tst_outlier.py mmtbx/scaling/tst_plan_sad_experiment.py mmtbx/scaling/tst_scaling.py mmtbx/scaling/tst_sigmaa.py mmtbx/scaling/tst_xtriage.py mmtbx/scaling/tst_xtriage_twin_analyses.py mmtbx/secondary_structure/ mmtbx/secondary_structure/tst.py mmtbx/secondary_structure/tst_insertion_codes.py mmtbx/secondary_structure/tst_segid.py mmtbx/secondary_structure/build/ mmtbx/secondary_structure/build/tst_1.py mmtbx/secondary_structure/build/tst_2.py mmtbx/secondary_structure/build/tst_3.py mmtbx/secondary_structure/build/tst_io.py mmtbx/secondary_structure/build/tst_ss_id_ncs.py mmtbx/utils/ mmtbx/utils/tst_switch_rotamers.py mmtbx/validation/ mmtbx/validation/regression/ mmtbx/validation/regression/tst_barbed_wire_analysis.py mmtbx/validation/regression/tst_cablam.py mmtbx/validation/regression/tst_cablam_2.py mmtbx/validation/regression/tst_cbetadev.py mmtbx/validation/regression/tst_cbetadev_02.py mmtbx/validation/regression/tst_chiral_validation.py mmtbx/validation/regression/tst_clashscore.py mmtbx/validation/regression/tst_clashscore_2.py mmtbx/validation/regression/tst_do_flips_clashscore.py mmtbx/validation/regression/tst_experimental.py mmtbx/validation/regression/tst_find_region_max_value.py mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py mmtbx/validation/regression/tst_keep_hydrogens.py mmtbx/validation/regression/tst_model_properties.py mmtbx/validation/regression/tst_molprobity_1.py mmtbx/validation/regression/tst_molprobity_2.py mmtbx/validation/regression/tst_molprobity_3.py mmtbx/validation/regression/tst_molprobity_4.py mmtbx/validation/regression/tst_molprobity_5.py mmtbx/validation/regression/tst_molprobity_arguments.py mmtbx/validation/regression/tst_mp_geo.py mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py mmtbx/validation/regression/tst_mp_geo_endtoend.py mmtbx/validation/regression/tst_mp_validate_bonds.py mmtbx/validation/regression/tst_omegalyze.py mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py mmtbx/validation/regression/tst_rama_z_01.py mmtbx/validation/regression/tst_rama_z_02.py mmtbx/validation/regression/tst_ramalyze.py mmtbx/validation/regression/tst_ramalyze2.py mmtbx/validation/regression/tst_ramalyze_rare.py mmtbx/validation/regression/tst_restraints.py mmtbx/validation/regression/tst_rna_validate.py mmtbx/validation/regression/tst_rotalyze.py mmtbx/validation/regression/tst_suitename.py mmtbx/validation/regression/tst_symmetry_SS.py mmtbx/validation/regression/tst_undowser.py mmtbx/validation/regression/tst_undowser2.py mmtbx/validation/regression/tst_utils.py mmtbx/validation/regression/tst_waters.py mmtbx/wwpdb/ mmtbx/wwpdb/tst_rcsb_entry_request.py mmtbx/wwpdb/tst_rcsb_web_services.py sent 8,587,932 bytes received 9,011 bytes 17,193,886.00 bytes/sec total size is 8,553,978 speedup is 1.00 building file list ... done omptbx/ omptbx/tst.py sent 1,313 bytes received 38 bytes 2,702.00 bytes/sec total size is 1,175 speedup is 0.87 building file list ... done rstbx/bpcx/ rstbx/bpcx/detector_model/ rstbx/bpcx/detector_model/tst_detector_model.py rstbx/cftbx/ rstbx/cftbx/tst_coordinate_frame_converter.py rstbx/diffraction/ rstbx/diffraction/tst_ewald_sphere.py rstbx/diffraction/tst_partial_derivatives.py rstbx/diffraction/tst_predict.py rstbx/diffraction/fastbragg/ rstbx/diffraction/fastbragg/tst_bragg_minimal.py rstbx/diffraction/fastbragg/tst_utils_clustering.py rstbx/dps_core/ rstbx/dps_core/tst_iotbx_converter.py rstbx/indexing/ rstbx/indexing/tst_auto_monoscan.py rstbx/indexing/tst_dataset1.py rstbx/simage/ rstbx/simage/tst.py rstbx/simulation/ rstbx/simulation/tst_xfel1_simple.py rstbx/sublattice_support/ rstbx/sublattice_support/tst_sublattice.py rstbx/viewer/ rstbx/viewer/tst.py sent 181,045 bytes received 311 bytes 362,712.00 bytes/sec total size is 179,407 speedup is 0.99 building file list ... done scitbx/array_family/ scitbx/array_family/tst_accessors.cpp scitbx/array_family/tst_af_1.cpp scitbx/array_family/tst_af_2.cpp scitbx/array_family/tst_af_3.cpp scitbx/array_family/tst_af_4.cpp scitbx/array_family/tst_af_5.cpp scitbx/array_family/tst_af_helpers.cpp scitbx/array_family/tst_mat3.cpp scitbx/array_family/tst_optional_copy.cpp scitbx/array_family/tst_rectangular_full_packed.cpp scitbx/array_family/tst_ref_matrix_facet.cpp scitbx/array_family/tst_sym_mat3.cpp scitbx/array_family/tst_unsigned_float_arithmetic.cpp scitbx/array_family/tst_vec3.cpp scitbx/array_family/boost_python/ scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py scitbx/array_family/boost_python/tst_flex.py scitbx/array_family/boost_python/tst_flex_argument_passing.py scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py scitbx/array_family/boost_python/tst_numpy_bridge.py scitbx/array_family/boost_python/tst_numpy_scalar_conversions.py scitbx/array_family/boost_python/tst_shared.py scitbx/array_family/boost_python/tst_smart_selection.py scitbx/dtmin/ scitbx/dtmin/regression/ scitbx/dtmin/regression/tst_dtmin_basic.py scitbx/dtmin/regression/tst_dtmin_booth.py scitbx/dtmin/regression/tst_dtmin_twisted.py scitbx/error/ scitbx/error/tst_error.cpp scitbx/error/tst_error.py scitbx/fftpack/ scitbx/fftpack/boost_python/ scitbx/fftpack/boost_python/tst_fftpack.py scitbx/fftpack/timing/ scitbx/fftpack/timing/tst3d.cpp scitbx/glmtbx/ scitbx/glmtbx/tests/ scitbx/glmtbx/tests/tst.py scitbx/graph/ scitbx/graph/tst_rigidity.py scitbx/graph/tst_tardy_tree.py scitbx/graph/tst_tardy_tree_find_paths.py scitbx/graph/tst_utils.py scitbx/graphics_utils/ scitbx/graphics_utils/tst.py scitbx/iso_surface/ scitbx/iso_surface/tst_iso_surface.m scitbx/iso_surface/tst_iso_surface.py scitbx/lbfgs/ scitbx/lbfgs/tst_curvatures.py scitbx/lbfgs/tst_ext.py scitbx/lbfgs/tst_func_free_line_search.py scitbx/lbfgs/tst_lbfgs.cpp scitbx/lbfgs/tst_lbfgs_fem.py scitbx/lbfgs/tst_mpi_split_evaluator.py scitbx/lbfgsb/ scitbx/lbfgsb/boost_python/ scitbx/lbfgsb/boost_python/tst_fit_cdf.py scitbx/lbfgsb/boost_python/tst_lbfgsb.py scitbx/linalg/ scitbx/linalg/tests/ scitbx/linalg/tests/tst_cholesky.py scitbx/linalg/tests/tst_eigensystem.py scitbx/linalg/tests/tst_lapack_dsyev.py scitbx/linalg/tests/tst_lapack_svd.py scitbx/linalg/tests/tst_matrix.py scitbx/linalg/tests/tst_svd.py scitbx/lstbx/ scitbx/lstbx/tests/ scitbx/lstbx/tests/tst_normal_equations.nb scitbx/lstbx/tests/tst_normal_equations.py scitbx/math/ scitbx/math/tst_2d_zernike.py scitbx/math/tst_bessel_zeros.py scitbx/math/tst_multivariate_moments.py scitbx/math/tst_so3_lie_algebra.py scitbx/math/tst_undirected_graph.py scitbx/math/tst_zernike.py scitbx/math/tst_zernike_mom.py scitbx/math/tests/ scitbx/math/tests/tst.cpp scitbx/math/tests/tst_angle_derivative.py scitbx/math/tests/tst_bessel.py scitbx/math/tests/tst_clustering.py scitbx/math/tests/tst_cubic_equation.py scitbx/math/tests/tst_curve_fitting.py scitbx/math/tests/tst_dmatrix.py scitbx/math/tests/tst_error_propagation_matrix_inverse.py scitbx/math/tests/tst_euler_angles.py scitbx/math/tests/tst_exp_functions.py scitbx/math/tests/tst_fit_peak.py scitbx/math/tests/tst_fit_quadratic_function.py scitbx/math/tests/tst_g_function.py scitbx/math/tests/tst_gaussian.py scitbx/math/tests/tst_gaussian_fit_1d_analytical.py scitbx/math/tests/tst_gcd.py scitbx/math/tests/tst_halton.py scitbx/math/tests/tst_line_search.py scitbx/math/tests/tst_math.py scitbx/math/tests/tst_minimum_covering_ellipsoid.py scitbx/math/tests/tst_orthonormal_basis.py scitbx/math/tests/tst_periodogram.py scitbx/math/tests/tst_quadrature.py scitbx/math/tests/tst_r3_rotation.py scitbx/math/tests/tst_resample.py scitbx/math/tests/tst_similarity_indices.py scitbx/math/tests/tst_superpose.py scitbx/math/tests/tst_tetrahedron.py scitbx/math/tests/tst_uniform_rotation_matrix.py scitbx/math/tests/tst_weighted_correlation.py scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky.cpp scitbx/matrix/tests/tst_givens.cpp scitbx/matrix/tests/tst_householder.cpp scitbx/matrix/tests/tst_householder.nb scitbx/matrix/tests/tst_householder.py scitbx/matrix/tests/tst_row_echelon.py scitbx/matrix/tests/tst_svd.cpp scitbx/matrix/tests/tst_svd.nb scitbx/matrix/tests/tst_svd_accuracy.nb scitbx/minpack/ scitbx/minpack/tst.py scitbx/python_utils/ scitbx/python_utils/tst_graph.py scitbx/python_utils/tst_random_transform.py scitbx/python_utils/tst_robust.py scitbx/random/ scitbx/random/tests/ scitbx/random/tests/tst_random.py scitbx/rigid_body/ scitbx/rigid_body/tst.py scitbx/rigid_body/essence/ scitbx/rigid_body/essence/tst_basic.py scitbx/rigid_body/essence/tst_energy_plots.py scitbx/rigid_body/essence/tst_tardy.py scitbx/rigid_body/proto/ scitbx/rigid_body/proto/tst_featherstone.py scitbx/rigid_body/proto/tst_free_motion.py scitbx/rigid_body/proto/tst_free_motion_hard.py scitbx/rigid_body/proto/tst_joint_lib.py scitbx/rigid_body/proto/tst_molecules.py scitbx/rigid_body/proto/tst_singular.py scitbx/rigid_body/proto/tst_spherical_refinement.py scitbx/serialization/ scitbx/serialization/tst_base_256.cpp scitbx/sparse/ scitbx/sparse/tests/ scitbx/sparse/tests/tst_lu_factorization.py scitbx/sparse/tests/tst_sparse.cpp scitbx/sparse/tests/tst_sparse.py scitbx/stl/ scitbx/stl/tst_map.py scitbx/stl/tst_set.py scitbx/stl/tst_vector.py scitbx/suffixtree/ scitbx/suffixtree/test/ scitbx/suffixtree/test/tst_single.py scitbx/tests/ scitbx/tests/tst_basic.csh scitbx/tests/tst_basic.py scitbx/tests/tst_cubicle_neighbors.py scitbx/tests/tst_genetic_algorithm_with_mp.py scitbx/tests/tst_minimizer_lbfgs_general.py scitbx/tests/tst_r3_utils.py scitbx/tests/tst_regular_grid_on_unit_sphere.py scitbx/tests/tst_smoothing.py scitbx/wigner/ scitbx/wigner/tst_wigner3j.py sent 1,128,902 bytes received 2,641 bytes 2,263,086.00 bytes/sec total size is 1,118,489 speedup is 0.99 building file list ... done sent 154 bytes received 12 bytes 332.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ab_initio/ smtbx/ab_initio/tests/ smtbx/ab_initio/tests/tst_ab_initio_ext.py smtbx/ab_initio/tests/tst_charge_flipping.py smtbx/absolute_structure/ smtbx/absolute_structure/tests/ smtbx/absolute_structure/tests/tst_absolute_structure.py smtbx/masks/ smtbx/masks/tests/ smtbx/masks/tests/tst_masks.py smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_constrained_structure.py smtbx/refinement/constraints/tests/tst_direction.py smtbx/refinement/constraints/tests/tst_disorder.py smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp smtbx/refinement/constraints/tests/tst_lbfgs.py smtbx/refinement/constraints/tests/tst_occupancies.py smtbx/refinement/constraints/tests/tst_reparametrisation.cpp smtbx/refinement/constraints/tests/tst_reparametrisation.py smtbx/refinement/constraints/tests/tst_rigid.py smtbx/refinement/constraints/tests/tst_same_group.py smtbx/refinement/constraints/tests/tst_special_position.cpp smtbx/refinement/restraints/ smtbx/refinement/restraints/tests/ smtbx/refinement/restraints/tests/tst_adp_restraints.py smtbx/refinement/restraints/tests/tst_manager.py smtbx/refinement/restraints/tests/tst_restraints.py smtbx/refinement/tests/ smtbx/refinement/tests/tst_least_squares.py smtbx/refinement/tests/tst_weighting_schemes.py smtbx/regression/ smtbx/regression/tst_commandline_anomrefine.py smtbx/regression/tst_commandline_refine.py smtbx/structure_factors/ smtbx/structure_factors/direct/ smtbx/structure_factors/direct/tests/ smtbx/structure_factors/direct/tests/tst_standard_xray.py smtbx/tests/ smtbx/tests/tst_utils.py sent 250,738 bytes received 519 bytes 502,514.00 bytes/sec total size is 248,243 speedup is 0.99 building file list ... done spotfinder/core_toolbox/ spotfinder/core_toolbox/boost_python/ spotfinder/core_toolbox/boost_python/tst_small_image.py sent 5,472 bytes received 37 bytes 11,018.00 bytes/sec total size is 5,074 speedup is 0.92 building file list ... done tbxx/ tbxx/tests/ tbxx/tests/tst_pretty_type_name.cpp sent 489 bytes received 41 bytes 353.33 bytes/sec total size is 323 speedup is 0.61 building file list ... done wxtbx/regression/ wxtbx/regression/tst_b_plot.py wxtbx/regression/tst_headless_construct.py wxtbx/regression/tst_imports.py wxtbx/regression/tst_process_control.py sent 10,250 bytes received 91 bytes 20,682.00 bytes/sec total size is 9,830 speedup is 0.95 building file list ... done xcif/ xcif/regression/ xcif/regression/tst_api_compat.py xcif/regression/tst_bindings.py xcif/regression/tst_example_parse.py xcif/regression/tst_example_tokenize.py xcif/regression/tst_gil_release.py xcif/regression/tst_iotbx_cif_reader_engine.py xcif/regression/tst_iotbx_cif_reader_parity.py xcif/regression/tst_memory.py xcif/regression/tst_non_strict_mode.py xcif/regression/tst_parse_verify.py xcif/regression/tst_pdb_coordinates.py xcif/regression/tst_pdb_sf.py xcif/regression/tst_quoted_string_delimiter.py xcif/regression/tst_roundtrip.py xcif/regression/tst_semicolon_field_strict.py xcif/regression/tst_string_interning.py xcif/regression/tst_utf8.py xcif/regression/cpp/ xcif/regression/cpp/tst_data_model.cpp xcif/regression/cpp/tst_error_handling.cpp xcif/regression/cpp/tst_infrastructure.cpp xcif/regression/cpp/tst_mapped_file.cpp xcif/regression/cpp/tst_non_strict_mode.cpp xcif/regression/cpp/tst_numeric.cpp xcif/regression/cpp/tst_quoted_string_delimiter.cpp xcif/regression/cpp/tst_semicolon_field_strict.cpp xcif/regression/cpp/tst_string_view.cpp xcif/regression/cpp/tst_thread_safety.cpp xcif/regression/cpp/tst_tokenizer.cpp sent 202,851 bytes received 557 bytes 406,816.00 bytes/sec total size is 200,767 speedup is 0.99 building file list ... done ./ annlib_adaptbx/ annlib_adaptbx/tests/ annlib_adaptbx/tests/data.txt annlib_adaptbx/tests/query.txt cctbx/maptbx/bcr/tables/ cctbx/maptbx/bcr/tables/Ag1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ag2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ag_electron.json.gz cctbx/maptbx/bcr/tables/Ag_wk1995.json.gz cctbx/maptbx/bcr/tables/Al3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Al_electron.json.gz cctbx/maptbx/bcr/tables/Al_wk1995.json.gz cctbx/maptbx/bcr/tables/Au1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Au3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Au_electron.json.gz cctbx/maptbx/bcr/tables/Au_wk1995.json.gz cctbx/maptbx/bcr/tables/B_electron.json.gz cctbx/maptbx/bcr/tables/B_wk1995.json.gz cctbx/maptbx/bcr/tables/Ba2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ba_electron.json.gz cctbx/maptbx/bcr/tables/Ba_wk1995.json.gz cctbx/maptbx/bcr/tables/Br1-_wk1995.json.gz cctbx/maptbx/bcr/tables/Br_electron.json.gz cctbx/maptbx/bcr/tables/Br_wk1995.json.gz cctbx/maptbx/bcr/tables/C_electron.json.gz cctbx/maptbx/bcr/tables/C_wk1995.json.gz cctbx/maptbx/bcr/tables/Ca2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ca_electron.json.gz cctbx/maptbx/bcr/tables/Ca_wk1995.json.gz cctbx/maptbx/bcr/tables/Cd2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cd_electron.json.gz cctbx/maptbx/bcr/tables/Cd_wk1995.json.gz cctbx/maptbx/bcr/tables/Cl1-_wk1995.json.gz cctbx/maptbx/bcr/tables/Cl_electron.json.gz cctbx/maptbx/bcr/tables/Cl_wk1995.json.gz cctbx/maptbx/bcr/tables/Co2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Co3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Co_electron.json.gz cctbx/maptbx/bcr/tables/Co_wk1995.json.gz cctbx/maptbx/bcr/tables/Cr2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cr3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cr_electron.json.gz cctbx/maptbx/bcr/tables/Cr_wk1995.json.gz cctbx/maptbx/bcr/tables/Cu1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cu2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cu_electron.json.gz cctbx/maptbx/bcr/tables/Cu_wk1995.json.gz cctbx/maptbx/bcr/tables/D1-_wk1995.json.gz cctbx/maptbx/bcr/tables/D_wk1995.json.gz cctbx/maptbx/bcr/tables/F1-_wk1995.json.gz cctbx/maptbx/bcr/tables/F_electron.json.gz cctbx/maptbx/bcr/tables/F_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe_electron.json.gz cctbx/maptbx/bcr/tables/Fe_wk1995.json.gz cctbx/maptbx/bcr/tables/H1-_wk1995.json.gz cctbx/maptbx/bcr/tables/H_electron.json.gz cctbx/maptbx/bcr/tables/H_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg_electron.json.gz cctbx/maptbx/bcr/tables/Hg_wk1995.json.gz cctbx/maptbx/bcr/tables/I1-_wk1995.json.gz cctbx/maptbx/bcr/tables/I_electron.json.gz cctbx/maptbx/bcr/tables/I_wk1995.json.gz cctbx/maptbx/bcr/tables/K1+_wk1995.json.gz cctbx/maptbx/bcr/tables/K_electron.json.gz cctbx/maptbx/bcr/tables/K_wk1995.json.gz cctbx/maptbx/bcr/tables/Li1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Li_electron.json.gz cctbx/maptbx/bcr/tables/Li_wk1995.json.gz cctbx/maptbx/bcr/tables/Mg2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mg_electron.json.gz cctbx/maptbx/bcr/tables/Mg_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn_electron.json.gz cctbx/maptbx/bcr/tables/Mn_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo5+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo6+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo_electron.json.gz cctbx/maptbx/bcr/tables/Mo_wk1995.json.gz cctbx/maptbx/bcr/tables/N_electron.json.gz cctbx/maptbx/bcr/tables/N_wk1995.json.gz cctbx/maptbx/bcr/tables/Na1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Na_electron.json.gz cctbx/maptbx/bcr/tables/Na_wk1995.json.gz cctbx/maptbx/bcr/tables/Ni2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ni3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ni_electron.json.gz cctbx/maptbx/bcr/tables/Ni_wk1995.json.gz cctbx/maptbx/bcr/tables/O1-_wk1995.json.gz cctbx/maptbx/bcr/tables/O2-_wk1995.json.gz cctbx/maptbx/bcr/tables/O_electron.json.gz cctbx/maptbx/bcr/tables/O_wk1995.json.gz cctbx/maptbx/bcr/tables/P_electron.json.gz cctbx/maptbx/bcr/tables/P_wk1995.json.gz cctbx/maptbx/bcr/tables/Pt2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Pt4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Pt_electron.json.gz cctbx/maptbx/bcr/tables/Pt_wk1995.json.gz cctbx/maptbx/bcr/tables/S_electron.json.gz cctbx/maptbx/bcr/tables/S_wk1995.json.gz cctbx/maptbx/bcr/tables/Se_electron.json.gz cctbx/maptbx/bcr/tables/Se_wk1995.json.gz cctbx/maptbx/bcr/tables/Si4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Si_electron.json.gz cctbx/maptbx/bcr/tables/Si_wk1995.json.gz cctbx/maptbx/bcr/tables/T1-_wk1995.json.gz cctbx/maptbx/bcr/tables/T_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti_electron.json.gz cctbx/maptbx/bcr/tables/Ti_wk1995.json.gz cctbx/maptbx/bcr/tables/Zn2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Zn_electron.json.gz cctbx/maptbx/bcr/tables/Zn_wk1995.json.gz cctbx/regression/itvb_2001_table_a1427_hall_symbols.html cctbx/regression/data/ cctbx/regression/data/D7.ccp4 cctbx/regression/data/D7.ncs_spec cctbx/regression/data/D7.pdb cctbx/regression/data/D7.seq cma_es/cma/ cma_es/cma/initials.par fable/fem/ fable/fem/major_types.hpp fable/test/sf_times.py fable/test/lenient/ fable/test/lenient/NOTE fable/test/lenient/calling_non_external_arg.f fable/test/lenient/str_blank_str.f fable/test/lenient/str_cont_line_str.f fable/test/semantic_error/ fable/test/semantic_error/assignment_to_parameter.f fable/test/semantic_error/calling_array.f fable/test/semantic_error/calling_dimension.f fable/test/semantic_error/common_equivalence.f fable/test/semantic_error/dimension_unknown_data_type.f fable/test/semantic_error/dims_repeated_in_common.f fable/test/semantic_error/dims_repeated_in_dimension.f fable/test/semantic_error/equivalence_external.f fable/test/semantic_error/external_array.f fable/test/semantic_error/external_common.f fable/test/semantic_error/function_data_type_decl_twice.f fable/test/semantic_error/function_name_is_also_arg.f fable/test/semantic_error/inquire_both_unit_and_file.f fable/test/semantic_error/inquire_no_unit_no_file.f fable/test/semantic_error/intrinsic_common.f fable/test/semantic_error/intrinsic_dimension.f fable/test/semantic_error/missing_include.f fable/test/semantic_error/parameter_array.f fable/test/semantic_error/parameter_in_common.f fable/test/semantic_error/parameter_in_sub_args.f fable/test/semantic_error/parameter_save.f fable/test/semantic_error/real_declared_twice.f fable/test/semantic_error/recursion_in_declaration.f fable/test/semantic_error/sub_fun_2.f fable/test/semantic_error/subroutine_name_is_also_arg.f fable/test/semantic_error/twice_in_sub_args.f fable/test/semantic_error/unknown_intrinsic.f fable/test/semantic_error/write_end.f fable/test/semantic_error/write_without_unit.f fable/test/syntax_error/ fable/test/syntax_error/bad_after_dot.f fable/test/syntax_error/bad_and.f fable/test/syntax_error/bad_complex_literal_1.f fable/test/syntax_error/bad_complex_literal_2.f fable/test/syntax_error/bad_data.f fable/test/syntax_error/bad_false.f fable/test/syntax_error/bad_format_1.f fable/test/syntax_error/bad_format_2.f fable/test/syntax_error/bad_format_3.f fable/test/syntax_error/bad_format_4.f fable/test/syntax_error/bad_format_5.f fable/test/syntax_error/bad_format_6.f fable/test/syntax_error/bad_format_7.f fable/test/syntax_error/bad_gt.f fable/test/syntax_error/bad_implied_do_1.f fable/test/syntax_error/bad_implied_do_2.f fable/test/syntax_error/bad_implied_do_3.f fable/test/syntax_error/bad_implied_do_4.f fable/test/syntax_error/bad_implied_do_5.f fable/test/syntax_error/bad_implied_do_6.f fable/test/syntax_error/bad_not.f fable/test/syntax_error/bad_not_2.f fable/test/syntax_error/bad_open_err_label.f fable/test/syntax_error/bad_or.f fable/test/syntax_error/bad_true.f fable/test/syntax_error/bare_data.f fable/test/syntax_error/bare_external.f fable/test/syntax_error/bare_integer_i.f fable/test/syntax_error/bare_print.f fable/test/syntax_error/closing_parenthesis_without_matching.f fable/test/syntax_error/common_with_data_size.f fable/test/syntax_error/data_plus_repetition.f fable/test/syntax_error/dimension_with_data_size.f fable/test/syntax_error/dot_e.f fable/test/syntax_error/duplicate_format_label.f fable/test/syntax_error/exclamation_mark_syndrome.f fable/test/syntax_error/format_without_label.f fable/test/syntax_error/fun_star.f fable/test/syntax_error/j_assign_i_percent_5.f fable/test/syntax_error/label_cont_char.f fable/test/syntax_error/label_empty.f fable/test/syntax_error/not_an_identifier.f fable/test/syntax_error/opening_parenthesis_without_matching.f fable/test/syntax_error/power_no_base.f fable/test/syntax_error/power_no_exponent.f fable/test/syntax_error/read_plus_name.f fable/test/syntax_error/read_star_comma_empty.f fable/test/syntax_error/read_star_name.f fable/test/syntax_error/save_bad_comma.f fable/test/syntax_error/save_num_comma_colon.f fable/test/syntax_error/save_num_val_colon.f fable/test/syntax_error/save_slash_slash.f fable/test/syntax_error/save_with_dims.f fable/test/syntax_error/sub_bad_comma.f fable/test/syntax_error/sub_bad_trailing.f fable/test/syntax_error/sub_no_name.f fable/test/syntax_error/sub_open_parenthesis.f fable/test/syntax_error/sub_percent_3.f fable/test/syntax_error/x_assign_1dotd.f fable/test/syntax_error/x_assign_1ex.f fable/test/syntax_error/x_assign_dot.f fable/test/syntax_error/x_assign_dot_2.f fable/test/unsupported/ fable/test/unsupported/goto_into_loop.f fable/test/unsupported/hollerith_cont_lines.f fable/test/unsupported/hollerith_with_quotes.f fable/test/unsupported/parameter_pow.f fable/test/valid/ fable/test/valid/add_dp_integer.f fable/test/valid/add_real_integer.f fable/test/valid/add_reals.f fable/test/valid/add_strings.f fable/test/valid/arr_float_2.f fable/test/valid/array_origin.f fable/test/valid/assign_to_array_elements.f fable/test/valid/blockdata_named.f fable/test/valid/blockdata_unnamed.f fable/test/valid/character_1_array_passing.f fable/test/valid/character_1_f90.f fable/test/valid/character_function.f fable/test/valid/character_function_2.f fable/test/valid/character_function_3.f fable/test/valid/combine_decl_1.f fable/test/valid/comments.f fable/test/valid/common_0.f fable/test/valid/common_1.f fable/test/valid/common_2.f fable/test/valid/common_3.f fable/test/valid/common_4.f fable/test/valid/common_equivalence_1.f fable/test/valid/common_equivalence_2.f fable/test/valid/common_equivalence_3.f fable/test/valid/common_equivalence_4.f fable/test/valid/common_equivalence_5.f fable/test/valid/common_equivalence_simple_1.f fable/test/valid/common_equivalence_simple_2.f fable/test/valid/common_equivalence_simple_3.f fable/test/valid/common_equivalence_simple_4.f fable/test/valid/common_equivalence_simple_5.f fable/test/valid/common_equivalence_simple_6.f fable/test/valid/common_name_clash.f fable/test/valid/common_name_clash_2.f fable/test/valid/common_name_clash_3.f fable/test/valid/common_save_members.f fable/test/valid/common_variants.f fable/test/valid/commonymous.f fable/test/valid/const_analysis_1.f fable/test/valid/const_analysis_2.f fable/test/valid/const_expressions.f fable/test/valid/const_expressions_2.f fable/test/valid/conv_recipe.f fable/test/valid/cycle_exit.f fable/test/valid/data_01.f fable/test/valid/data_02.f fable/test/valid/data_03.f fable/test/valid/data_04.f fable/test/valid/data_05.f fable/test/valid/data_06.f fable/test/valid/data_07.f fable/test/valid/data_08.f fable/test/valid/data_09.f fable/test/valid/data_10.f fable/test/valid/data_11.f fable/test/valid/data_12.f fable/test/valid/data_13.f fable/test/valid/data_14.f fable/test/valid/data_15.f fable/test/valid/data_16.f fable/test/valid/data_17.f fable/test/valid/data_18.f fable/test/valid/data_19.f fable/test/valid/data_20.f fable/test/valid/data_21.f fable/test/valid/data_22.f fable/test/valid/data_23.f fable/test/valid/data_24.f fable/test/valid/data_25.f fable/test/valid/data_26.f fable/test/valid/data_27.f fable/test/valid/data_28.f fable/test/valid/data_29.f fable/test/valid/data_30.f fable/test/valid/data_31.f fable/test/valid/data_32.f fable/test/valid/data_byte.f fable/test/valid/data_double_from_double_and_float.f fable/test/valid/data_str_arr.f fable/test/valid/data_type_star.f fable/test/valid/data_types.f fable/test/valid/decl_before_if.f fable/test/valid/dependency_cycle.f fable/test/valid/dim_with_parameter.f fable/test/valid/dimensions.f fable/test/valid/do_enddo.f fable/test/valid/do_ix_num.f fable/test/valid/do_label.f fable/test/valid/do_variable_passed.f fable/test/valid/do_while.f fable/test/valid/doc_data_type_star.f fable/test/valid/double_literal.f fable/test/valid/dp_example.f fable/test/valid/dynamic_parameters_1.f fable/test/valid/dynamic_parameters_2.f fable/test/valid/dynamic_parameters_3.f fable/test/valid/dynamic_parameters_4.f fable/test/valid/dynamic_parameters_5.f fable/test/valid/entry_fun_1.f fable/test/valid/entry_fun_2.f fable/test/valid/entry_sub_1.f fable/test/valid/entry_sub_2.f fable/test/valid/equivalence_01.f fable/test/valid/equivalence_02.f fable/test/valid/equivalence_03.f fable/test/valid/equivalence_04.f fable/test/valid/equivalence_05.f fable/test/valid/equivalence_06.f fable/test/valid/equivalence_07.f fable/test/valid/equivalence_08.f fable/test/valid/equivalence_09.f fable/test/valid/equivalence_10.f fable/test/valid/equivalence_11.f fable/test/valid/equivalence_12.f fable/test/valid/equivalence_data.f fable/test/valid/equivalence_mixed.f fable/test/valid/equivalence_repeated.f fable/test/valid/external_arg_function.f fable/test/valid/external_arg_layers.f fable/test/valid/external_arg_non_const.f fable/test/valid/external_arg_pass_call.f fable/test/valid/external_arg_simple.f fable/test/valid/external_arg_subroutine.f fable/test/valid/f90_ne_token.f fable/test/valid/file_names_and_expected_cout fable/test/valid/flush_external.f fable/test/valid/flush_intrinsic.f fable/test/valid/format_escape.f fable/test/valid/format_nested.f fable/test/valid/format_quote_syndrome.f fable/test/valid/format_str_blank_str.f fable/test/valid/format_used_twice.f fable/test/valid/formats.f fable/test/valid/function_calls_with_its_name_as_arg.f fable/test/valid/function_data_type_in_body.f fable/test/valid/function_no_arg.f fable/test/valid/function_no_arg_with_common_in_expression.f fable/test/valid/function_two_returns_1.f fable/test/valid/function_two_returns_2.f fable/test/valid/function_write.f fable/test/valid/goto_computed.f fable/test/valid/goto_forms.f fable/test/valid/goto_last_do.f fable/test/valid/goto_spaghetti.f fable/test/valid/goto_target_before_else.f fable/test/valid/hexadecimal.f fable/test/valid/hollerith.f fable/test/valid/identifier_prefix.f fable/test/valid/if_arithmetic.f fable/test/valid/if_cond_if_arithmetic.f fable/test/valid/if_else_endif.f fable/test/valid/if_elseif_else_endif.f fable/test/valid/if_endif.f fable/test/valid/if_spaghetti.f fable/test/valid/if_write.f fable/test/valid/implicit_integer_a.f fable/test/valid/implicit_ranges.f fable/test/valid/implied_external_arg_sub.f fable/test/valid/implied_external_arg_sub_2.f fable/test/valid/implied_program.f fable/test/valid/implied_trailing_program.f fable/test/valid/inquire.f fable/test/valid/inquire_opened.f fable/test/valid/int_literal_eq_int_literal.f fable/test/valid/integer_star_2_array.f fable/test/valid/intrinsic_with_data_type.f fable/test/valid/intrinsics_extra.f fable/test/valid/intrinsics_iargc_getarg.f fable/test/valid/intrinsics_legacy.f fable/test/valid/label_format.f fable/test/valid/len_trim.f fable/test/valid/logical_a_or_b.f fable/test/valid/logical_ops.f fable/test/valid/long_lines.f fable/test/valid/main_cmn_indirect.f fable/test/valid/mod_integers.f fable/test/valid/open_chain.f fable/test/valid/open_write_read.f fable/test/valid/open_write_read_2.f fable/test/valid/ops.f fable/test/valid/parameter_for_arg_and_cmn_dim.f fable/test/valid/parameter_n.f fable/test/valid/parameter_save.f fable/test/valid/parameter_save_common.f fable/test/valid/parameters_2.f fable/test/valid/parameters_recursive.f fable/test/valid/parameters_recursive_2.f fable/test/valid/passing_arrays.f fable/test/valid/passing_arrays_2.f fable/test/valid/passing_strings.f fable/test/valid/power.f fable/test/valid/power_2.f fable/test/valid/print.f fable/test/valid/read_end.f fable/test/valid/read_end_empty.f fable/test/valid/read_end_err.f fable/test/valid/read_end_err_star_double.f fable/test/valid/read_err.f fable/test/valid/read_fmt_double.f fable/test/valid/read_fmt_past_end_of_line.f fable/test/valid/read_fmt_real.f fable/test/valid/read_fmt_slash.f fable/test/valid/read_fmt_string.f fable/test/valid/read_fmt_x.f fable/test/valid/read_format.f fable/test/valid/read_implied_do_1.f fable/test/valid/read_iostat_end_err_1.f fable/test/valid/read_iostat_end_err_2.f fable/test/valid/read_iostat_from_file.f fable/test/valid/read_iostat_from_string.f fable/test/valid/read_lines.f fable/test/valid/read_rec_iostat.f fable/test/valid/read_star.f fable/test/valid/read_star_empty.f fable/test/valid/read_star_integer.f fable/test/valid/read_star_print_star.f fable/test/valid/read_test_1.f fable/test/valid/read_test_1_iostat.f fable/test/valid/read_test_2.f fable/test/valid/read_test_3.f fable/test/valid/read_unformatted_str_arr.f fable/test/valid/real_array_sum.f fable/test/valid/recursive_subroutine.f fable/test/valid/rewind.f fable/test/valid/save_0.f fable/test/valid/save_1.f fable/test/valid/save_2.f fable/test/valid/save_3.f fable/test/valid/save_equivalence_1.f fable/test/valid/scopes_1.f fable/test/valid/scopes_2.f fable/test/valid/scopes_3.f fable/test/valid/scopes_4.f fable/test/valid/sf.f fable/test/valid/sign.f fable/test/valid/stop_bare.f fable/test/valid/stop_integer.f fable/test/valid/stop_string.f fable/test/valid/string_array.f fable/test/valid/string_array_declarations.f fable/test/valid/string_assign_to_slice.f fable/test/valid/string_common_dims.f fable/test/valid/string_compare.f fable/test/valid/string_concat.f fable/test/valid/string_spanning_continuation_lines.f fable/test/valid/string_sub_array_passing.f fable/test/valid/strings_size_dim.f fable/test/valid/strings_size_dim_data.f fable/test/valid/sub_fun_1.f fable/test/valid/sub_fun_3.f fable/test/valid/sub_nums_size_capacity.f fable/test/valid/sub_star.f fable/test/valid/subroutine_1.f fable/test/valid/subroutine_2.f fable/test/valid/subroutine_3.f fable/test/valid/subroutine_4.f fable/test/valid/subroutine_5.f fable/test/valid/subroutine_6.f fable/test/valid/subroutine_7.f fable/test/valid/subroutine_8.f fable/test/valid/subroutine_9.f fable/test/valid/subroutine_write_iunit.f fable/test/valid/subroutine_zero.f fable/test/valid/tab_syndrome.f fable/test/valid/triple_3d.f fable/test/valid/triple_3d_common.f fable/test/valid/unformatted_experiments.f fable/test/valid/unused_arg_implicit_none.f fable/test/valid/unused_args.f fable/test/valid/using_intrinsics.f fable/test/valid/write_1.f fable/test/valid/write_err.f fable/test/valid/write_extra_parentheses.f fable/test/valid/write_fmt_double.f fable/test/valid/write_format.f fable/test/valid/write_format_with_colon.f fable/test/valid/write_implied_do_1.f fable/test/valid/write_implied_do_2.f fable/test/valid/write_implied_do_3.f fable/test/valid/write_implied_do_4.f fable/test/valid/write_implied_do_5.f fable/test/valid/write_internal_file.f fable/test/valid/write_internal_file_2.f fable/test/valid/write_internal_file_3.f fable/test/valid/write_internal_file_4.f fable/test/valid/write_pow.f fable/test/valid/write_read_end_err_implied_do.f fable/test/valid/write_read_unformatted.f fable/test/valid/write_star.f fable/test/valid/write_star_real_star_4.f fable/test/valid/write_star_real_star_8.f iotbx/bioinformatics/test/alignment.pir iotbx/bioinformatics/test/ebi_blast.xml.gz iotbx/bioinformatics/test/ncbi_blast.xml.gz iotbx/ccp4_map/ccp4_20_21_22_to_30_40_50.ccp4 iotbx/examples/pdb_truncate_to_ala/__init__.py iotbx/examples/pdb_truncate_to_ala/crambin_pieces.pdb iotbx/examples/pdb_truncate_to_ala/resname_mix.pdb iotbx/examples/pdb_truncate_to_ala/tutorial.txt iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py iotbx/examples/pdb_truncate_to_ala/v2_simple.py iotbx/examples/pdb_truncate_to_ala/v3_better.py iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py iotbx/regression/data/ iotbx/regression/data/1yjp.pdb iotbx/regression/data/2ERL.pdb iotbx/regression/data/D7.ccp4 iotbx/regression/data/big_cube_model.cif iotbx/regression/data/big_cube_model.pdb iotbx/regression/data/cu3182Isup2.hkl iotbx/regression/data/cu3182sup1.cif iotbx/regression/data/insulin_unmerged_cutted_from_ccp4.mtz iotbx/regression/data/mmma.ccp4 iotbx/regression/data/mmmab.ccp4 iotbx/regression/data/mmmb.ccp4 iotbx/regression/data/non_zero_origin_map.ccp4 iotbx/regression/data/non_zero_origin_model.cif iotbx/regression/data/non_zero_origin_model.pdb iotbx/regression/data/non_zero_origin_model_split.cif iotbx/regression/data/non_zero_origin_model_split.pdb iotbx/regression/data/non_zero_origin_ncs_model.cif iotbx/regression/data/non_zero_origin_ncs_model.pdb iotbx/regression/data/non_zero_origin_ncs_spec.ncs_spec iotbx/regression/data/pdb1zff.ent iotbx/regression/data/phaser_1.mtz iotbx/regression/data/shelx.ins iotbx/regression/secondary_structure/1ubf_cutted.pdb iotbx/regression/secondary_structure/3jd6_noh.pdb iotbx/regression/secondary_structure/4a7h_chainC.pdb iotbx/regression/secondary_structure/5a63_chainBp.pdb iotbx/regression/secondary_structure/5a63_chainCp.pdb iotbx/xds/tests/INTEGRATE.HKL iotbx/xds/tests/NEW_XPARM.XDS iotbx/xds/tests/XDS.INP iotbx/xds/tests/XDS_2.INP iotbx/xds/tests/XPARM.XDS libtbx/citations.params mmtbx/regression/pdbs/ mmtbx/regression/pdbs/1ucs_cutted_xyz_rounded.pdb mmtbx/regression/pdbs/1yjp_h.pdb mmtbx/regression/pdbs/2ERL_noH.pdb mmtbx/regression/pdbs/7n2l.pdb mmtbx/regression/pdbs/AF_json_v3.cif mmtbx/regression/pdbs/AF_json_v3.pdb mmtbx/regression/pdbs/Fe_1brf_snip_reduced.pdb mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.cif mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.pdb mmtbx/regression/pdbs/ligand_before_prot.pdb mmtbx/regression/pdbs/one_chain_ligand_water.pdb mmtbx/regression/pdbs/p9.pdb mmtbx/regression/pdbs/pae.pdb mmtbx/regression/pdbs/pae_model.cif mmtbx/regression/pdbs/pae_model.pdb mmtbx/regression/pdbs/test1.cif mmtbx/regression/pdbs/two_chains.pdb mmtbx/regression/pdbs/two_chains_ligand_water.pdb rstbx/indexing/results2.dat rstbx/indexing/si_brief.dat rstbx/indexing/si_synthetic.dat scitbx/array_family/boost_python/regression_test.py scitbx/tests/__init__.py scitbx/tests/differential_evolution.py scitbx/tests/direct_search_simulated_annealing.py scitbx/tests/golden_section_search.py scitbx/tests/simplex.py smtbx/regression/test_data/ smtbx/regression/test_data/sucrose_p1.res smtbx/regression/test_data/thpp.cif smtbx/regression/test_data/thpp.hkl smtbx/regression/test_data/thpp.ins sent 85,667,218 bytes received 11,386 bytes 171,357,208.00 bytes/sec total size is 85,700,051 speedup is 1.00 make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' dh_install -p libcctbx0 usr/lib/x86_64-linux-gnu/lib*.so.* install -m0755 -d debian/libcctbx0//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libann_adaptor.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libann_adaptor.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libasymmetric_map.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libasymmetric_map.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libcbf-private.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libcbf-private.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libccp4io.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libccp4io.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libcctbx.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libcctbx.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libcctbx_sgtbx_asu.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libdxtbxspotfinder.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libiotbx_mtz.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libiotbx_pdb.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libiotbx_xplor.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libmmtbx_masks.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libmmtbx_tls.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libomptbx.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libomptbx.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/librstbx.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/librstbx.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libscitbx_minpack.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libscitbx_slatec.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libsmtbx_refinement_constraints.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libspotfinder.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libspotfinder.so.0.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libxcif.so.0 debian/tmp/usr/lib/x86_64-linux-gnu/libxcif.so.0.0.1 debian/libcctbx0//usr/lib/x86_64-linux-gnu/ dh_install -p libcctbx-dev usr/include/ install -m0755 -d debian/libcctbx-dev//usr cp --reflink=auto -a debian/tmp/usr/include/ debian/libcctbx-dev//usr/ dh_install -p libcctbx-dev usr/lib/x86_64-linux-gnu/lib*.so install -m0755 -d debian/libcctbx-dev//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libann_adaptor.so debian/tmp/usr/lib/x86_64-linux-gnu/libasymmetric_map.so debian/tmp/usr/lib/x86_64-linux-gnu/libcbf-private.so debian/tmp/usr/lib/x86_64-linux-gnu/libccp4io.so debian/tmp/usr/lib/x86_64-linux-gnu/libcctbx.so debian/tmp/usr/lib/x86_64-linux-gnu/libcctbx_sgtbx_asu.so debian/tmp/usr/lib/x86_64-linux-gnu/libdxtbxspotfinder.so debian/tmp/usr/lib/x86_64-linux-gnu/libiotbx_mtz.so debian/tmp/usr/lib/x86_64-linux-gnu/libiotbx_pdb.so debian/tmp/usr/lib/x86_64-linux-gnu/libiotbx_xplor.so debian/tmp/usr/lib/x86_64-linux-gnu/libmmtbx_masks.so debian/tmp/usr/lib/x86_64-linux-gnu/libmmtbx_tls.so debian/tmp/usr/lib/x86_64-linux-gnu/libomptbx.so debian/tmp/usr/lib/x86_64-linux-gnu/librstbx.so debian/tmp/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so debian/tmp/usr/lib/x86_64-linux-gnu/libscitbx_minpack.so debian/tmp/usr/lib/x86_64-linux-gnu/libscitbx_slatec.so debian/tmp/usr/lib/x86_64-linux-gnu/libsmtbx_refinement_constraints.so debian/tmp/usr/lib/x86_64-linux-gnu/libspotfinder.so debian/tmp/usr/lib/x86_64-linux-gnu/libxcif.so debian/libcctbx-dev//usr/lib/x86_64-linux-gnu/ dh_install -p python3-cctbx usr/bin install -m0755 -d debian/python3-cctbx//usr cp --reflink=auto -a debian/tmp/usr/bin debian/python3-cctbx//usr/ install -m0755 -d debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr/ cp --reflink=auto -a ./cctbx/maptbx/bcr/CNOPSFeAu-6_1A_dist21.tab debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr// dh_install -p python3-cctbx usr/lib/cctbx install -m0755 -d debian/python3-cctbx//usr/lib cp --reflink=auto -a debian/tmp/usr/lib/cctbx debian/python3-cctbx//usr/lib/ install -m0755 -d debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr/ cp --reflink=auto -a ./cctbx/maptbx/bcr/CNOPSFeAu-6_1A_dist21.tab debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr// dh_install -p python3-cctbx usr/lib/python* install -m0755 -d debian/python3-cctbx//usr/lib cp --reflink=auto -a debian/tmp/usr/lib/python3.14 debian/python3-cctbx//usr/lib/ install -m0755 -d debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr/ cp --reflink=auto -a ./cctbx/maptbx/bcr/CNOPSFeAu-6_1A_dist21.tab debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr// make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' dh_installdocs -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/share/doc/libcctbx0 install -p -m0644 debian/copyright debian/libcctbx0/usr/share/doc/libcctbx0/copyright install -m0755 -d debian/libcctbx-dev/usr/share/doc/libcctbx-dev install -p -m0644 debian/copyright debian/libcctbx-dev/usr/share/doc/libcctbx-dev/copyright install -m0755 -d debian/python3-cctbx/usr/share/doc/python3-cctbx install -p -m0644 debian/copyright debian/python3-cctbx/usr/share/doc/python3-cctbx/copyright dh_installchangelogs -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/share/doc/libcctbx0 install -p -m0644 debian/.debhelper/generated/libcctbx0/dh_installchangelogs.dch.trimmed debian/libcctbx0/usr/share/doc/libcctbx0/changelog.Debian install -p -m0644 debian/.debhelper/generated/libcctbx0/dh_installchangelogs.dch.binnmu debian/libcctbx0/usr/share/doc/libcctbx0/changelog.Debian.amd64 install -p -m0644 ./CHANGELOG.rst debian/libcctbx0/usr/share/doc/libcctbx0/changelog install -m0755 -d debian/python3-cctbx/usr/share/doc/python3-cctbx install -p -m0644 debian/.debhelper/generated/python3-cctbx/dh_installchangelogs.dch.trimmed debian/python3-cctbx/usr/share/doc/python3-cctbx/changelog.Debian install -p -m0644 debian/.debhelper/generated/python3-cctbx/dh_installchangelogs.dch.binnmu debian/python3-cctbx/usr/share/doc/python3-cctbx/changelog.Debian.amd64 install -p -m0644 ./CHANGELOG.rst debian/python3-cctbx/usr/share/doc/python3-cctbx/changelog install -m0755 -d debian/libcctbx-dev/usr/share/doc/libcctbx-dev install -p -m0644 debian/.debhelper/generated/libcctbx-dev/dh_installchangelogs.dch.trimmed debian/libcctbx-dev/usr/share/doc/libcctbx-dev/changelog.Debian install -p -m0644 debian/.debhelper/generated/libcctbx-dev/dh_installchangelogs.dch.binnmu debian/libcctbx-dev/usr/share/doc/libcctbx-dev/changelog.Debian.amd64 install -p -m0644 ./CHANGELOG.rst debian/libcctbx-dev/usr/share/doc/libcctbx-dev/changelog dh_python3 -a -O--buildsystem=pybuild D: dh_python3 dh_python3:87: version: 7.20260623 D: dh_python3 dh_python3:88: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:89: options: DHPythonOptions(O=['--buildsystem=pybuild'], accept_upstream_versions=False, arch=True, clean_dbg_pkg=True, compile_all=False, depends=[], depends_section=[], guess_deps=True, ignore_shebangs=False, no_ext_rename=False, no_package=[], no_shebang_rewrite=False, package=[], private_dir=None, recommends=[], recommends_section=[], regexpr=[], remaining_packages=False, requires=[], shebang=None, skip_private=False, suggests=[], suggests_section=[], verbose=True, vrange=None, write_log=False) D: dh_python3 dh_python3:90: supported Python versions: 3.14 (default=3.14) D: dh_python3 debhelper:219: skipping package libcctbx0 (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:219: skipping package libcctbx-dev (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:229: source=cctbx, binary packages=['python3-cctbx'] D: dh_python3 dh_python3:117: processing package python3-cctbx... D: dh_python3 fs:60: moving files from debian/python3-cctbx/usr/lib/python3.14/dist-packages to debian/python3-cctbx/usr/lib/python3/dist-packages/ D: dh_python3 tools:297: invoking: /usr/bin/python3.14 -c 'import sysconfig as s; print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' I: dh_python3 fs:507: renaming cctbx_adptbx_ext.so to cctbx_adptbx_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_pdb_ext.so to iotbx_pdb_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_boost_thread_test_ext.so to boost_adaptbx_boost_thread_test_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming spotfinder_hough_ext.so to spotfinder_hough_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_lbfgsb_ext.so to scitbx_lbfgsb_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_maximum_clique_ext.so to boost_adaptbx_graph_maximum_clique_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_clustering_algorithm_ext.so to boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_scalepack_ext.so to iotbx_scalepack_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_reference_coordinate_ext.so to mmtbx_reference_coordinate_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_maptbx_bcr_bcr_ext.so to cctbx_maptbx_bcr_bcr_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_henke_ext.so to cctbx_eltbx_henke_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_sparse_ext.so to scitbx_sparse_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_dynamics_ext.so to mmtbx_dynamics_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_shelx_ext.so to iotbx_shelx_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_emma_ext.so to cctbx_emma_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_wildcard_ext.so to iotbx_wildcard_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_optional_ext.so to boost_optional_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming smtbx_structure_factors_direct_ext.so to smtbx_structure_factors_direct_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_icsd_radii_ext.so to cctbx_eltbx_icsd_radii_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_ext.so to boost_adaptbx_graph_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_ramachandran_restraints_ext.so to mmtbx_ramachandran_restraints_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_xray_observations_ext.so to cctbx_xray_observations_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_attenuation_coefficient_ext.so to cctbx_eltbx_attenuation_coefficient_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_rigid_body_ext.so to scitbx_rigid_body_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_chemical_elements_ext.so to cctbx_eltbx_chemical_elements_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_min_cut_max_flow_ext.so to boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_anharmonic_ext.so to cctbx_anharmonic_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_symmetry_constraints_ext.so to rstbx_symmetry_constraints_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_ext.so to rstbx_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_wavelengths_ext.so to cctbx_eltbx_wavelengths_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_minpack_ext.so to scitbx_minpack_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_python_streambuf_test_ext.so to boost_adaptbx_python_streambuf_test_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_ccp4_map_ext.so to iotbx_ccp4_map_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming smtbx_refinement_restraints_ext.so to smtbx_refinement_restraints_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_graphics_utils_ext.so to scitbx_graphics_utils_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_xray_ext.so to cctbx_xray_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_statistics_ext.so to cctbx_statistics_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_validation_ramachandran_ext.so to mmtbx_validation_ramachandran_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_reduce_ext.so to mmtbx_reduce_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_xplor_ext.so to iotbx_xplor_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_miller_ext.so to cctbx_miller_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_covalent_radii_ext.so to cctbx_eltbx_covalent_radii_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_bulk_solvent_ext.so to mmtbx_bulk_solvent_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_glmtbx_ext.so to scitbx_glmtbx_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_r3_utils_ext.so to scitbx_r3_utils_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming spotfinder_distltbx_ext.so to spotfinder_distltbx_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_mosaic_ext.so to mmtbx_mosaic_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_iso_surface_ext.so to scitbx_iso_surface_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming gltbx_util_ext.so to gltbx_util_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_rsr_ext.so to mmtbx_rsr_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_den_restraints_ext.so to mmtbx_den_restraints_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_secondary_structure_ext.so to mmtbx_secondary_structure_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_tls_optimise_amplitudes_ext.so to mmtbx_tls_optimise_amplitudes_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_utils_ext.so to mmtbx_utils_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_merging_ext.so to cctbx_merging_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_lbfgs_ext.so to scitbx_lbfgs_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_masks_ext.so to cctbx_masks_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming smtbx_stl_map_ext.so to smtbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_integration_ext.so to rstbx_integration_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_scaling_ext.so to mmtbx_scaling_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_max_lik_ext.so to mmtbx_max_lik_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_bandpass_ext.so to rstbx_bandpass_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_metric_ext.so to boost_adaptbx_graph_metric_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_cif_ext.so to iotbx_cif_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_f_model_ext.so to mmtbx_f_model_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_bpcx_detector_model_ext.so to rstbx_bpcx_detector_model_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming dxtbx_flumpy.so to dxtbx_flumpy.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_lstbx_normal_equations_ext.so to scitbx_lstbx_normal_equations_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_python_meta_ext.so to boost_python_meta_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_stl_set_ext.so to scitbx_stl_set_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_simulation_ext.so to rstbx_simulation_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_random_ext.so to scitbx_random_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming regression_test_ext.so to regression_test_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming dxtbx_imageset_ext.so to dxtbx_imageset_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming smtbx_refinement_least_squares_ext.so to smtbx_refinement_least_squares_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_tiny_pse_ext.so to cctbx_eltbx_tiny_pse_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming std_pair_ext.so to std_pair_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_tls_decompose_ext.so to mmtbx_tls_decompose_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming gltbx_viewer_utils_ext.so to gltbx_viewer_utils_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_geometry_shared_types_ext.so to mmtbx_geometry_shared_types_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming fable_ext.so to fable_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_math_ext.so to cctbx_math_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming xcif_ext.so to xcif_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming gltbx_gl_ext.so to gltbx_gl_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming dxtbx_ext.so to dxtbx_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_probe_ext.so to mmtbx_probe_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_masks_ext.so to mmtbx_masks_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_sasaki_ext.so to cctbx_eltbx_sasaki_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_neutron_ext.so to cctbx_eltbx_neutron_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_geometry_sphere_surface_sampling_ext.so to mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_dsn6_map_ext.so to iotbx_dsn6_map_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_array_family_shared_ext.so to scitbx_array_family_shared_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming spotfinder_array_family_flex_ext.so to spotfinder_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_tuple_ext.so to boost_tuple_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_diffraction_fastbragg_ext.so to rstbx_diffraction_fastbragg_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_fp_fdp_ext.so to cctbx_eltbx_fp_fdp_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_simage_ext.so to rstbx_simage_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_pdb_hierarchy_ext.so to iotbx_pdb_hierarchy_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming determine_unit_cell_ext.so to determine_unit_cell_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming dxtbx_format_nexus_ext.so to dxtbx_format_nexus_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cma_es_ext.so to cma_es_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_tls_utils_ext.so to mmtbx_tls_utils_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_asymmetric_map_ext.so to cctbx_asymmetric_map_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_detectors_ext.so to iotbx_detectors_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_uctbx_ext.so to cctbx_uctbx_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_detectors_bruker_ext.so to iotbx_detectors_bruker_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_french_wilson_ext.so to cctbx_french_wilson_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming gltbx_quadrics_ext.so to gltbx_quadrics_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming smtbx_ab_initio_ext.so to smtbx_ab_initio_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming dxtbx_model_ext.so to dxtbx_model_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_maptbx_ext.so to cctbx_maptbx_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_crystal_ext.so to cctbx_crystal_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming annlib_ext.so to annlib_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_python_hybrid_times_ext.so to boost_python_hybrid_times_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_building_loop_closure_ext.so to mmtbx_building_loop_closure_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_graph_structure_comparison_ext.so to boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_fftpack_ext.so to scitbx_fftpack_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_geometry_restraints_ext.so to cctbx_geometry_restraints_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_sgtbx_ext.so to cctbx_sgtbx_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_geometry_clash_ext.so to mmtbx_geometry_clash_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_mtz_ext.so to iotbx_mtz_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_stl_map_ext.so to scitbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming omptbx_ext.so to omptbx_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_suffixtree_single_ext.so to scitbx_suffixtree_single_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming smtbx_array_family_ext.so to smtbx_array_family_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_orientation_ext.so to cctbx_orientation_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming spotfinder_dxtbx_ext.so to spotfinder_dxtbx_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_ncs_cartesian_restraints_ext.so to mmtbx_ncs_cartesian_restraints_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_sgtbx_asu_ext.so to cctbx_sgtbx_asu_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_ncs_ext.so to mmtbx_ncs_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_pair_interaction_ext.so to mmtbx_pair_interaction_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_suffixtree_shared_ext.so to scitbx_suffixtree_shared_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_stl_vector_ext.so to scitbx_stl_vector_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_rational_ext.so to boost_rational_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_array_family_flex_ext.so to rstbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_connected_component_algorithm_ext.so to boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_dmtbx_ext.so to cctbx_dmtbx_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_hydrogens_ext.so to mmtbx_hydrogens_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_multipolar_ext.so to cctbx_multipolar_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming smtbx_refinement_constraints_ext.so to smtbx_refinement_constraints_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_dssp_ext.so to mmtbx_dssp_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_dtrek_ext.so to iotbx_dtrek_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_array_family_flex_ext.so to cctbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_indexing_api_ext.so to rstbx_indexing_api_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming dxtbx_format_image_ext.so to dxtbx_format_image_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_breadth_first_search_ext.so to boost_adaptbx_graph_breadth_first_search_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_array_family_flex_ext.so to scitbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_cubicle_neighbors_ext.so to scitbx_cubicle_neighbors_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_geometry_asa_ext.so to mmtbx_geometry_asa_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_xray_scattering_ext.so to cctbx_eltbx_xray_scattering_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_geometry_ext.so to cctbx_geometry_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_geometry_indexing_ext.so to mmtbx_geometry_indexing_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_utility_ext.so to boost_adaptbx_graph_utility_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_translation_search_ext.so to cctbx_translation_search_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming dxtbx_masking_ext.so to dxtbx_masking_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_alignment_ext.so to mmtbx_alignment_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_geometry_primitive_ext.so to mmtbx_geometry_primitive_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_adp_restraints_ext.so to cctbx_adp_restraints_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_math_ext.so to scitbx_math_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming gltbx_fonts_ext.so to gltbx_fonts_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_rotamer_fit_ext.so to mmtbx_rotamer_fit_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_wigner_ext.so to scitbx_wigner_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_tls_ext.so to mmtbx_tls_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_linalg_ext.so to scitbx_linalg_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cbflib_ext.so to cbflib_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_symmetry_search_ext.so to cctbx_symmetry_search_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming gltbx_glu_ext.so to gltbx_glu_ext.cpython-314-x86_64-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_covariance_ext.so to cctbx_covariance_ext.cpython-314-x86_64-linux-gnu.so D: dh_python3 fs:180: Writing INSTALLER in debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx-3.30.0.dist-info D: dh_python3 fs:192: Deleting WHEEL and RECORD in debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx-3.30.0.dist-info D: dh_python3 fs:180: Writing INSTALLER in debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.dist-info D: dh_python3 fs:192: Deleting WHEEL and RECORD in debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.dist-info D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_under_build): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.ramalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_pdb_mmcif_problems): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.reflection_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.find_residue_in_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_unused_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bibtex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mask): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cbf_read): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_source_files_sorted_by_size): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.kinemage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.simulate_collection): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.benchmark_refinement): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_matching_formats): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.debugging.hydrogenate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.detector_superpose): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_variable_names): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.xplor.map.show_summary): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.xtriage_gui): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.water_b_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.matthews): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.start_process): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_cctbx_bundle_for_installer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cif_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.qttbx.view_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.saturation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.probe2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.as_miller_arrays): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_as_cns): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.find_distances): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.molprobity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.build_phil_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.any2unix): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.try_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.auto_sharpen): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.real_space_correlation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phasertng.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.dtrek.to_cns): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.wxpython): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.brehm_diederichs): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx_regression.test_nightly): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.super): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.path_utility): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_suites): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.transfer_crystal_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_clutter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.select_best_starting_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.superpose_centers_of_mass): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.tcsh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.structure_factor_timings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.emma): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_python_sys_executable): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.ligand_restraints_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ss_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cbetadev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.csv_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_editor): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.raise_exception_for_testing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.image_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.hbond): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_registry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.comparama): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_r_factors_by_shell): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.dynamics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.install): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.f000): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_bin_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.search_pdb_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.extract_code_from_txt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_puckers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.simple_map_coefficients): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.bfactor_plot): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.read_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.unique_with_biomt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.omegalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.mtrix_reconstruction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.image_availability): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.py_compile_all): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.validate_ligands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_to_model_histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.validation_summary): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.divide_by_zero): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rotalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.index): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.HKLinfo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.real_space_diff_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.process_predicted_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.anomalous_differences_histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.display_parallax_correction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.eltbx.show_fp_fdp): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdbtools): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cc_star): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.fem_include_search_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.solver): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.process_predicted_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.unpack_in_sources): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.clashscore2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.radial_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_mask_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.undowser2_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.refresh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.join_fragment_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost.lcm): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rama_z): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_file_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.inexact): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.make_install_HKLviewer_ChimeraX): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.undowser_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.subgroups): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.remove_outliers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.secondary_structure_restraints): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_env): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.model_vs_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.sort_hetatms): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.help): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.reduce2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.dump_as_python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_tests): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.exec): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.create): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.compare_datasets): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.print_header): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/annlib.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_to_structure_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.prime_factors_of): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/labelit.png): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cns_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.run_tests_parallel): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.gdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.distance_difference): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rotalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.table_one): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_unused_imports_crude): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.altloc_remediate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.nested_cpp_loops_with_check_signals): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_interpretation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.pdb_interpretation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_does_not_contain_strings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_but_no_repr): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.thin_client): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.printenv): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.r_factor_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rigid_bond_test): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_module_dependencies): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.cablam): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz_as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.sweep_strength): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.barbed_wire_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.secondary_structure_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.unicode_examples): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.poscar_as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz2map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_build_options): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.install_format): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_selfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fab_elbow_angle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.overload): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.install_conda): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_untested): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.explore_metric_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.sisa): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.cout): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_atom_selection): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.clean_clutter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.show_platform_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cxi.image_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_comparison): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.electrons): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.seconds_since_the_epoch): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_repository_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.chunk): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_box): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.data_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rebuild_rotarama_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_completion_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rebuild_cablam_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.merging_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.inspect_r_free_flags): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.mp_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_host_and_user): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.wavelength_units): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.prepare_pdb_deposition): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.wait_for_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.phil): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.resource_monitor_plot): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.symmetry_search): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.polder): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_model_distances): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.clashscore2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.plan_sad_experiment): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fake_f_obs): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/annlib.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.split_models): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.sort_atoms): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fem): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.geometry_minimization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_sizes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.validate_ligands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.add_conformations): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.split_data_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/samosa.join): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.fft): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.debugging.riding): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fft): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.distance_least_squares): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.sdb_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.analyse_code_comments): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.check_libcpp): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_date_and_time): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.cbetadev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remote_processing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_installer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.molprobity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.feature_enhanced_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.density_modification): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.masks): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/sphinx.build): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/xcif.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.csh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.file_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.cod_select_and_pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.mp_spotfinder_server_read_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sge_available_slots): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fmodel): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.emringer_score): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_as_fasta): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.epydoc_run): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.plot_anomalous_scattering): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.import_all_python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.debug_memory): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_ends_with): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reindex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_calls): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.holton_geometry_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/xcif.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.scons): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cbf.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_numpy_version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.add_docstrings_with_ai): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.space_group_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.import_all_ext): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rank_scale_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.find_peaks_holes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.make_sphinx_html): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.apply_ncs_to_ligand): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx_blobs): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_systematic_absences): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.patterson_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.reindent): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.unique_with_biomt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_full_command_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.holton_geometry_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.french_wilson): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_all_on_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.french_wilson): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_exp_times): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.clashscore2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.dano_as_amplitudes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_remediator): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.fetch_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.perigee): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.easy_qsub): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_python_dependencies): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reduce_cryoem_resolution): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.segment_and_split_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rama_z): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bundle_as_exe): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.TAAM_minus_IAM): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.resolution): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_converter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.form_factor_query): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.line_count): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.xmanip): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_editor): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.print_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.refine_anomalous_substructure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reflection_file_converter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_lib_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cif_as_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/samosa.scale): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_puckers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_windows_exe): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.env_run): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.undowser_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/xcif.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.phil): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.segmentation_fault): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.crystal_symmetry_from_any): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.show_environ_usage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.development.xtrapol8): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.clashscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mp_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fobs_minus_fobs_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.ramalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.explore_completeness): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_environ_usage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.quantum_interface): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.models_as_chains): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bash): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.signal_strength): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.apply_tapenade_hints): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.start_binary_bundle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost.gcd): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.angle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_contains_strings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.dlsnxs2cbf): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.massage_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.nonbonded_overlaps): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.link_as_geometry_restraints_edits): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.mon_lib_cif_triage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.qscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.mp_geo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.clashscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.helix_sheet_recs_as_pdb_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_include_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_commands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.kinemage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_install_script_bat): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.diffuse): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.barbed_wire_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.undowser2_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.pdb_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.probescore_ligand): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.dtrace): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.any2nexus): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.pdflatex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.tst_memory): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_numeric_version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_vs_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.parallel_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.get_pubmed_citation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_distances): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.TAAM_minus_IAM): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_vs_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.wx_display): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.data_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_line_count): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.development.next_gen_atom_typing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_pythonpath): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.example_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_number_of_processors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_labels_comparison): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cxi.image2pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.absolute_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.arginine_geometry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.chiral_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.hierarchy): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_cif_conversion): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_peaks_holes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.validate_H): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_unzipsfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sge_qstat_counts): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_tls_groups): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.export_scalepack_unmerged): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.visualize_r_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.where_is_that_cif_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_modules): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.mtz.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.superpose): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.undowser2_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.multiplicity_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_mac_app): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.refine): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.maximum_entropy_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.b_factor_stats): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.emma): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.emringer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.double_overflow): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.reduce_cryoem_resolution): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.make_dist): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.find_active_area): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remove_unused_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.configure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_in_repositories): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.box_around_molecule): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fetch_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reflection_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.clear_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.flip_symmetric_amino_acids): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.latex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.maps): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ribbons): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ringer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls_as_xyz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.show_connectivity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_labels_diff): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.split): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.grow_density): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.estimate_bijvoet_ratio): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.git_avoid_merges): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reciprocal_space_arrays): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.superpose_atoms_by_name): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bootstrap): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.aev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.anom_refine): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_reticular_twin_laws): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_reserved_names): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.biomt_reconstruction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_accumulation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.development.valence_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.merging_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.insert_write_at_start_of_each_procedure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.verify_mon_lib_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.model_vs_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/annlib.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bundle_as_selfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.development.the_run_down): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.run_pickled_function): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.plot_detector_models): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.omegalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.lattice_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_suites): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.getting_started): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.depends_on): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.loggraph): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.prune_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.print_matching_images): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif_as_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_not_show_diff): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.chiral_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_old_style_classes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.int_overflow): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.read): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.valgrind): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remove_tree): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.plan_sad_experiment): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.HKLinfo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.nequal): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.web.install): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.precession_view): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.generate_error_h): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.image2pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.euclidean_model_matching): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.blast_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.model_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.insert_scale_records): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.get_citation): doesn't look like a shebang: #! /bin/sh D: dh_python3 fs:397: package python3-cctbx details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': {'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx-3.30.0.dist-info/METADATA', 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.dist-info/METADATA'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.14')}, 'ext_stableabi': set(), 'ext_no_version': set()} D: dh_python3 depends:148: generating dependencies for package python3-cctbx D: dh_python3 pydist:237: trying to find dependency for hdf5plugin (python=None) D: dh_python3 pydist:281: dependency: module hdf5plugin is known to pydist: [PyDist(name='hdf5plugin', versions={Version('3.14')}, dependency='python3-hdf5plugin', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for h5py (python=None) D: dh_python3 pydist:281: dependency: module h5py is known to pydist: [PyDist(name='h5py', versions={Version('3.14')}, dependency='python3-h5py', standard='PEP386', rules=[]), PyDist(name='h5py', versions={Version('3.14')}, dependency='python3-h5py', standard=None, rules=[])] D: dh_python3 pydist:358: dependency: included in build-deps with limits D: dh_python3 pydist:237: trying to find dependency for numpy (python=None) D: dh_python3 pydist:281: dependency: module numpy is known to pydist: [PyDist(name='numpy', versions={Version('3.14')}, dependency='python3-numpy', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for matplotlib (python=None) D: dh_python3 pydist:281: dependency: module matplotlib is known to pydist: [PyDist(name='matplotlib', versions={Version('3.14')}, dependency='python3-matplotlib', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for mrcfile (python=None) D: dh_python3 pydist:281: dependency: module mrcfile is known to pydist: [PyDist(name='mrcfile', versions={Version('3.14')}, dependency='python3-mrcfile', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for natsort (python=None) D: dh_python3 pydist:281: dependency: module natsort is known to pydist: [PyDist(name='natsort', versions={Version('3.14')}, dependency='python3-natsort', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for nxmx (python=None) D: dh_python3 pydist:281: dependency: module nxmx is known to pydist: [PyDist(name='nxmx', versions={Version('3.14')}, dependency='python3-nxmx', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for ordered_set (python=None) D: dh_python3 pydist:281: dependency: module ordered-set is known to pydist: [PyDist(name='ordered-set', versions={Version('3.14')}, dependency='python3-ordered-set', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for pint (python=None) D: dh_python3 pydist:281: dependency: module pint is known to pydist: [PyDist(name='pint', versions={Version('3.14')}, dependency='python3-pint', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for procrunner (python=None) D: dh_python3 pydist:281: dependency: module procrunner is known to pydist: [PyDist(name='procrunner', versions={Version('3.14')}, dependency='python3-procrunner', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for pymol (python=None) D: dh_python3 pydist:281: dependency: module pymol is known to pydist: [PyDist(name='pymol', versions={Version('3.14')}, dependency='python3-pymol', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for requests (python=None) D: dh_python3 pydist:281: dependency: module requests is known to pydist: [PyDist(name='requests', versions={Version('3.14')}, dependency='python3-requests', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for scipy (python=None) D: dh_python3 pydist:281: dependency: module scipy is known to pydist: [PyDist(name='scipy', versions={Version('3.14')}, dependency='python3-scipy', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for six (python=None) D: dh_python3 pydist:281: dependency: module six is known to pydist: [PyDist(name='six', versions={Version('3.14')}, dependency='python3-six', standard='PEP386', rules=[]), PyDist(name='six', versions={Version('3.14')}, dependency='python3-six', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for PIL (python=None) D: dh_python3 pydist:281: dependency: module pil is known to pydist: [PyDist(name='pil', versions={Version('3.14')}, dependency='python3-pil', standard=None, rules=[]), PyDist(name='pil', versions={Version('3.14')}, dependency='python3-pil', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for tqdm (python=None) D: dh_python3 pydist:281: dependency: module tqdm is known to pydist: [PyDist(name='tqdm', versions={Version('3.14')}, dependency='python3-tqdm', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for wxPython (python=None) D: dh_python3 pydist:281: dependency: module wxpython is known to pydist: [PyDist(name='wxpython', versions={Version('3.14')}, dependency='python3-wxgtk4.0', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 depends:330: D={'python3-mrcfile', 'python3-pil', 'python3-wxgtk4.0', 'python3-matplotlib', 'python3-requests', 'python3-natsort', 'python3-hdf5plugin', 'python3 (<< 3.15)', 'python3-six', 'python3-nxmx', 'python3-numpy', 'python3:any', 'python3-h5py (>= 3)', 'python3-ordered-set', 'python3-procrunner', 'python3-scipy', 'python3 (>= 3.14~)', 'python3-pint', 'python3-tqdm', 'python3-pymol'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cctbx/usr/share/lintian/overrides install -p -m0644 debian/python3-cctbx.lintian-overrides debian/python3-cctbx/usr/share/lintian/overrides/python3-cctbx dh_perl -a -O--buildsystem=pybuild rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_link make[1]: Entering directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' dh_auto_build -- -s custom --build-args="dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python{version}/include" pybuild --build -i python{version} -p 3.14 -s custom --build-args="dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python{version}/include" --parallel=6 I: pybuild base:385: dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python3.14/include rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libann_adaptor.so ln -s libann_adaptor.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libann_adaptor.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libomptbx.so ln -s libomptbx.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libomptbx.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libscitbx_slatec.so ln -s libscitbx_slatec.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libscitbx_slatec.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libiotbx_xplor.so ln -s libiotbx_xplor.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libiotbx_xplor.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libspotfinder.so ln -s libspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libspotfinder.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libasymmetric_map.so ln -s libasymmetric_map.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libasymmetric_map.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libsmtbx_refinement_constraints.so ln -s libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libsmtbx_refinement_constraints.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so ln -s libscitbx_boost_python.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libmmtbx_masks.so ln -s libmmtbx_masks.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libmmtbx_masks.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libmmtbx_tls.so ln -s libmmtbx_tls.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libmmtbx_tls.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libiotbx_pdb.so ln -s libiotbx_pdb.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libiotbx_pdb.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/librstbx.so ln -s librstbx.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/librstbx.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libscitbx_minpack.so ln -s libscitbx_minpack.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libscitbx_minpack.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libcctbx.so ln -s libcctbx.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libcctbx.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libcbf-private.so ln -s libcbf-private.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libcbf-private.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libdxtbxspotfinder.so ln -s libdxtbxspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libdxtbxspotfinder.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libxcif.so ln -s libxcif.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libxcif.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libccp4io.so ln -s libccp4io.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libccp4io.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libcctbx_sgtbx_asu.so ln -s libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libcctbx_sgtbx_asu.so rm -f debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libiotbx_mtz.so ln -s libiotbx_mtz.so.0.0.1 debian/libcctbx-dev/usr/lib/x86_64-linux-gnu/libiotbx_mtz.so install -m0755 -d debian/libcctbx-dev/usr/lib/cctbx/python3.14 rm -f debian/libcctbx-dev/usr/lib/cctbx/python3.14/include ln -s ../../../include/cctbx debian/libcctbx-dev/usr/lib/cctbx/python3.14/include make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' dh_strip_nondeterminism -a -O--buildsystem=pybuild Using 1791228809 as canonical time Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/ncbi_blast.xml.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/ebi_blast.xml.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Al3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/H_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Se_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/B_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/D_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cd_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/K_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/I_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/P_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Zn_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/N_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo5+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mg_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/H_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Zn2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/F_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/K1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Li_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Li1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ca_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/C_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Al_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mg2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Li_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/S_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mg_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/I1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Br_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/T_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ca2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/C_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Na_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Si4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/S_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/K_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ba2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cl_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Zn_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/I_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/B_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Se_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cd_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Br1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Si_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Al_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Br_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cl_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cl1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Si_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/P_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ca_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/F1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo6+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/T1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Na_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Na1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cd2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ba_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/F_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/D1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ba_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/N_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O2-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/H1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip dh_compress -a -O--buildsystem=pybuild cd debian/libcctbx0 cd debian/libcctbx-dev cd debian/python3-cctbx chmod a-x usr/share/doc/libcctbx-dev/changelog usr/share/doc/libcctbx-dev/changelog.Debian usr/share/doc/libcctbx-dev/changelog.Debian.amd64 chmod a-x usr/share/doc/libcctbx0/changelog usr/share/doc/libcctbx0/changelog.Debian usr/share/doc/libcctbx0/changelog.Debian.amd64 chmod a-x usr/share/doc/python3-cctbx/changelog usr/share/doc/python3-cctbx/changelog.Debian usr/share/doc/python3-cctbx/changelog.Debian.amd64 gzip -9nf usr/share/doc/libcctbx0/changelog usr/share/doc/libcctbx0/changelog.Debian usr/share/doc/libcctbx0/changelog.Debian.amd64 gzip -9nf usr/share/doc/libcctbx-dev/changelog usr/share/doc/libcctbx-dev/changelog.Debian usr/share/doc/libcctbx-dev/changelog.Debian.amd64 gzip -9nf usr/share/doc/python3-cctbx/changelog usr/share/doc/python3-cctbx/changelog.Debian usr/share/doc/python3-cctbx/changelog.Debian.amd64 cd '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' cd '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' cd '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' dh_fixperms -a -O--buildsystem=pybuild find debian/libcctbx0 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcctbx-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-cctbx ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcctbx0/usr/share/doc -type f -a -true -a ! -regex 'debian/libcctbx0/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx0/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcctbx0 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libcctbx-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx0/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libcctbx-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcctbx-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-cctbx/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python3-cctbx/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-cctbx/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-cctbx/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/libcctbx0/usr/lib/debug/.dwz/x86_64-linux-gnu/libcctbx0.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/libcctbx0.debug -- debian/libcctbx0/usr/lib/x86_64-linux-gnu/libann_adaptor.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libasymmetric_map.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libcbf-private.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libccp4io.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libcctbx.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libomptbx.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/librstbx.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libxcif.so.0.0.1 install -m0755 -d debian/python3-cctbx/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/python3-cctbx/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cctbx.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cctbx.debug -- debian/python3-cctbx/usr/bin/cbflib.tst_memory debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debian/python3-cctbx/usr/bin/cctbx.find_distances debian/python3-cctbx/usr/bin/cctbx.getting_started debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debian/python3-cctbx/usr/bin/cctbx_blobs debian/python3-cctbx/usr/lib/cctbx/python3.14/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/error/tst_error debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/math/tests/tst debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-x86_64-linux-gnu.so objcopy --compress-debug-sections debian/libcctbx0/usr/lib/debug/.dwz/x86_64-linux-gnu/libcctbx0.debug chmod 0644 -- debian/libcctbx0/usr/lib/debug/.dwz/x86_64-linux-gnu/libcctbx0.debug objcopy --compress-debug-sections debian/python3-cctbx/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cctbx.debug chmod 0644 -- debian/python3-cctbx/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cctbx.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a6 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libccp4io.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a6/6b40176d440a53bab88ab4b5481efceacba1cc.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a6/6b40176d440a53bab88ab4b5481efceacba1cc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libccp4io.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a6/6b40176d440a53bab88ab4b5481efceacba1cc.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libccp4io.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f0 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libomptbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f0/81e913bb5700006e3ccde689c3d296ed71b86a.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f0/81e913bb5700006e3ccde689c3d296ed71b86a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libomptbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f0/81e913bb5700006e3ccde689c3d296ed71b86a.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libomptbx.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c2 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/librstbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c2/e27fc83315e4a38bb5b6d27da9c101a072acec.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c2/e27fc83315e4a38bb5b6d27da9c101a072acec.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/librstbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c2/e27fc83315e4a38bb5b6d27da9c101a072acec.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/librstbx.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/04 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/04/27bb9fe7f5912913e940b9f0d5ada75ac22b14.debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/2cf3383362246c90d7114ae9a6658098746309.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/04/27bb9fe7f5912913e940b9f0d5ada75ac22b14.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libiotbx_mtz.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/04/27bb9fe7f5912913e940b9f0d5ada75ac22b14.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libiotbx_mtz.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f9 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f9/1a8c376ddd2f222ed9630476ade543ffa54ee9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/2cf3383362246c90d7114ae9a6658098746309.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/2cf3383362246c90d7114ae9a6658098746309.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/f8548d21bbebdc0d553d970aba82c4890e17ae.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/f8548d21bbebdc0d553d970aba82c4890e17ae.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/f8548d21bbebdc0d553d970aba82c4890e17ae.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/73e4c3e2c6a5633b9150adc0efc4105a8d9b80.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/73e4c3e2c6a5633b9150adc0efc4105a8d9b80.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/73e4c3e2c6a5633b9150adc0efc4105a8d9b80.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/ad655a82c52612c122de87fdbc5fb3d84b59aa.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f9/1a8c376ddd2f222ed9630476ade543ffa54ee9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f9/1a8c376ddd2f222ed9630476ade543ffa54ee9.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/62 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/62/d136275e8d74fa634aefdab92c17d22c32d6b2.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/62/d136275e8d74fa634aefdab92c17d22c32d6b2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/62/d136275e8d74fa634aefdab92c17d22c32d6b2.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/d0 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/d0/f08e22123f6fb0ffe3f73a3a544077d77d33ea.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/ad655a82c52612c122de87fdbc5fb3d84b59aa.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/ad655a82c52612c122de87fdbc5fb3d84b59aa.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6e/bd6ffda0d70bb465e1e731eff3e6351b9f44aa.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/d0/f08e22123f6fb0ffe3f73a3a544077d77d33ea.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/d0/f08e22123f6fb0ffe3f73a3a544077d77d33ea.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e5 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e5/cd0f1e2ba1d6fcf17500d9ab93448a11812e86.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6e/bd6ffda0d70bb465e1e731eff3e6351b9f44aa.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6e/bd6ffda0d70bb465e1e731eff3e6351b9f44aa.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c/f5e4135bd354a6498c2040de19cb45d6ae98f9.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e5/cd0f1e2ba1d6fcf17500d9ab93448a11812e86.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libmmtbx_masks.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e5/cd0f1e2ba1d6fcf17500d9ab93448a11812e86.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libmmtbx_masks.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3e objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libspotfinder.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3e/5d9e181c83b3a3c11efa83007b6ec827f432df.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c/f5e4135bd354a6498c2040de19cb45d6ae98f9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c/f5e4135bd354a6498c2040de19cb45d6ae98f9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/42d1d3349ba9c7481eaf8e1be1d57f72535db3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/42d1d3349ba9c7481eaf8e1be1d57f72535db3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/42d1d3349ba9c7481eaf8e1be1d57f72535db3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/30 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/30/931e0b44e86bfec3a58cdf56e40ef0f8bedee5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/30/931e0b44e86bfec3a58cdf56e40ef0f8bedee5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/30/931e0b44e86bfec3a58cdf56e40ef0f8bedee5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-x86_64-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3e/5d9e181c83b3a3c11efa83007b6ec827f432df.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libspotfinder.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3e/5d9e181c83b3a3c11efa83007b6ec827f432df.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libspotfinder.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb/4075b1ca0eae5ed6533b99ebd6cc6a860ef55d.debug install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/65 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/65/0270c1c75f56d9b3612559d18fdaa577ae0d05.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/65/0270c1c75f56d9b3612559d18fdaa577ae0d05.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libdxtbxspotfinder.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/65/0270c1c75f56d9b3612559d18fdaa577ae0d05.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libdxtbxspotfinder.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb/4075b1ca0eae5ed6533b99ebd6cc6a860ef55d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb/4075b1ca0eae5ed6533b99ebd6cc6a860ef55d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/5d objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libxcif.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/5d/11a940794d818b68cd21b609ebf7329c6ede4c.debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb/1ce9e949024d02534d2aa6ebd6d9e7a79adca8.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/5d/11a940794d818b68cd21b609ebf7329c6ede4c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libxcif.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/5d/11a940794d818b68cd21b609ebf7329c6ede4c.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libxcif.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/19 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libasymmetric_map.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/19/7b00481ddbb4efe5e5fe2cdf77a1e52dccb6ed.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb/1ce9e949024d02534d2aa6ebd6d9e7a79adca8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb/1ce9e949024d02534d2aa6ebd6d9e7a79adca8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/14daed5c02d4ba6cecfe8aaf6356e6c8610808.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/19/7b00481ddbb4efe5e5fe2cdf77a1e52dccb6ed.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libasymmetric_map.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/14daed5c02d4ba6cecfe8aaf6356e6c8610808.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/19/7b00481ddbb4efe5e5fe2cdf77a1e52dccb6ed.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libasymmetric_map.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/14daed5c02d4ba6cecfe8aaf6356e6c8610808.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libcbf-private.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/7b/d28910fe6b6e4508ee4f93a6281784bff532b3.debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/d5a451b8115b110d7d747e3a6fd5111e336ce1.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/7b/d28910fe6b6e4508ee4f93a6281784bff532b3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libcbf-private.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/7b/d28910fe6b6e4508ee4f93a6281784bff532b3.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libcbf-private.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/d5a451b8115b110d7d747e3a6fd5111e336ce1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ac objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ac/0245e637ba7c48abad4009de4702d3266f4f85.debug objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/d5a451b8115b110d7d747e3a6fd5111e336ce1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78/f8faa4fd158b471ed18fa2bbff1fed45f164d6.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ac/0245e637ba7c48abad4009de4702d3266f4f85.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libiotbx_pdb.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ac/0245e637ba7c48abad4009de4702d3266f4f85.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libiotbx_pdb.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a2 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libcctbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a2/c8c24a549b741d598447b614ffaafafc00cfd2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78/f8faa4fd158b471ed18fa2bbff1fed45f164d6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78/f8faa4fd158b471ed18fa2bbff1fed45f164d6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6e/e6cc4bf315ceb9151c47049f030fdca7b12da5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6e/e6cc4bf315ceb9151c47049f030fdca7b12da5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6e/e6cc4bf315ceb9151c47049f030fdca7b12da5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/729bb014075ed7933444989f4bcf5384be4ad0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/729bb014075ed7933444989f4bcf5384be4ad0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/729bb014075ed7933444989f4bcf5384be4ad0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/8395c70f5aff95add7efa5f48fbfe792c144ed.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a2/c8c24a549b741d598447b614ffaafafc00cfd2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libcctbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a2/c8c24a549b741d598447b614ffaafafc00cfd2.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libcctbx.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bf objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libann_adaptor.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bf/4105d040280472cf6902df8e9163d81751cdf2.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bf/4105d040280472cf6902df8e9163d81751cdf2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libann_adaptor.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/bf/4105d040280472cf6902df8e9163d81751cdf2.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libann_adaptor.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/92 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/92/5342697e094bfa70eba84478e716c3fb6410f7.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/92/5342697e094bfa70eba84478e716c3fb6410f7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libmmtbx_tls.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/92/5342697e094bfa70eba84478e716c3fb6410f7.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libmmtbx_tls.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/9a/e5eccb5516c68fc001a5389eda4a94ce3a794f.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/9a/e5eccb5516c68fc001a5389eda4a94ce3a794f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libiotbx_xplor.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/9a/e5eccb5516c68fc001a5389eda4a94ce3a794f.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libiotbx_xplor.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/5a/2940f7aabb49fc981948d41c483e728ddacd5e.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/5a/2940f7aabb49fc981948d41c483e728ddacd5e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_minpack.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/5a/2940f7aabb49fc981948d41c483e728ddacd5e.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_minpack.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/75 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/75/9344eb5ed628b27427f892088ea3a8042e65a6.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/75/9344eb5ed628b27427f892088ea3a8042e65a6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_slatec.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/75/9344eb5ed628b27427f892088ea3a8042e65a6.debug debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_slatec.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libcctbx0/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libcctbx0/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libcctbx0/usr/lib/debug install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/share/doc ln -s libcctbx0 debian/.debhelper/libcctbx0/dbgsym-root/usr/share/doc/libcctbx0-dbgsym install -m0755 -d debian/.debhelper/libcctbx0 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/8395c70f5aff95add7efa5f48fbfe792c144ed.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/8395c70f5aff95add7efa5f48fbfe792c144ed.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/82ac56ad0ed99d346e23fc764492f2adb0f0d0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/82ac56ad0ed99d346e23fc764492f2adb0f0d0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/82ac56ad0ed99d346e23fc764492f2adb0f0d0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6/b4231d1744cfa9c9d99c641d284c9b5ea9f296.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6/b4231d1744cfa9c9d99c641d284c9b5ea9f296.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6/b4231d1744cfa9c9d99c641d284c9b5ea9f296.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6/62b8aa76861c48389fc4e4bfbb3c32bfb9be76.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6/62b8aa76861c48389fc4e4bfbb3c32bfb9be76.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6/62b8aa76861c48389fc4e4bfbb3c32bfb9be76.debug debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be/4680cbd7f0d40be03ce023b7910f44e32f58f0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be/4680cbd7f0d40be03ce023b7910f44e32f58f0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be/4680cbd7f0d40be03ce023b7910f44e32f58f0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0/a79082814c11d7a964e872b582e9e94a64ed59.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0/a79082814c11d7a964e872b582e9e94a64ed59.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0/a79082814c11d7a964e872b582e9e94a64ed59.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/a97e5cdaf3ef6db0077aaec89a69c71948f4f3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/a97e5cdaf3ef6db0077aaec89a69c71948f4f3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/a97e5cdaf3ef6db0077aaec89a69c71948f4f3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/692084f4780f2127625d85d20663b13db3683f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/692084f4780f2127625d85d20663b13db3683f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/692084f4780f2127625d85d20663b13db3683f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/abffa093cf361daa39033914103f8465a9d34b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/abffa093cf361daa39033914103f8465a9d34b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/abffa093cf361daa39033914103f8465a9d34b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/48 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/48/c5ed2f319d4ecfebddc295fe2a4e6dc9a70fc8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/48/c5ed2f319d4ecfebddc295fe2a4e6dc9a70fc8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/48/c5ed2f319d4ecfebddc295fe2a4e6dc9a70fc8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/9cb4082982df3c2a08273855d4b0dce69c0fde.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/9cb4082982df3c2a08273855d4b0dce69c0fde.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/9cb4082982df3c2a08273855d4b0dce69c0fde.debug debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4e/d87ab70db470e008b18510f146be611a298803.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4e/d87ab70db470e008b18510f146be611a298803.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4e/d87ab70db470e008b18510f146be611a298803.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd/8841025189fb93e4482f05e1f3a90df64cbc7e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd/8841025189fb93e4482f05e1f3a90df64cbc7e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd/8841025189fb93e4482f05e1f3a90df64cbc7e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7/a4216597791f2db8997cb48db4b954b7944acc.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7/a4216597791f2db8997cb48db4b954b7944acc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7/a4216597791f2db8997cb48db4b954b7944acc.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12/c7c57696520d18fb3ca844d2b99a8dbfb28661.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12/c7c57696520d18fb3ca844d2b99a8dbfb28661.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12/c7c57696520d18fb3ca844d2b99a8dbfb28661.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/54 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/54/6caa38d23290df3173f1d1d63b01333070fa4f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/54/6caa38d23290df3173f1d1d63b01333070fa4f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/54/6caa38d23290df3173f1d1d63b01333070fa4f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/5185e55277ad289ffb7d595a2c8eef89382615.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/5185e55277ad289ffb7d595a2c8eef89382615.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/5185e55277ad289ffb7d595a2c8eef89382615.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/1d72a9af2ee55264dc8e4bbb92e570cc0a57b3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/1d72a9af2ee55264dc8e4bbb92e570cc0a57b3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/1d72a9af2ee55264dc8e4bbb92e570cc0a57b3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf/5af1c907c35c4bdb16a6f01db8a49b7002d358.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf/5af1c907c35c4bdb16a6f01db8a49b7002d358.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf/5af1c907c35c4bdb16a6f01db8a49b7002d358.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12/4cee6e86d17ee7cab38e872b261217d3cb400b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12/4cee6e86d17ee7cab38e872b261217d3cb400b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12/4cee6e86d17ee7cab38e872b261217d3cb400b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15/78edfce93225b0cc0d28bb8533943015928c46.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15/78edfce93225b0cc0d28bb8533943015928c46.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15/78edfce93225b0cc0d28bb8533943015928c46.debug debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/167d0a2a1f7ad70ae1f1e2a13b8aa7e00cb79e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/167d0a2a1f7ad70ae1f1e2a13b8aa7e00cb79e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/167d0a2a1f7ad70ae1f1e2a13b8aa7e00cb79e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57/8c9b23c2d4083df885987f6d2168580b712683.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57/8c9b23c2d4083df885987f6d2168580b712683.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57/8c9b23c2d4083df885987f6d2168580b712683.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fc objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fc/1c876743330c4f6fed56f3621232985eee11d2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fc/1c876743330c4f6fed56f3621232985eee11d2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fc/1c876743330c4f6fed56f3621232985eee11d2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/86e572e8e9ec10e64d0b7455239b58b80ff5bc.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/86e572e8e9ec10e64d0b7455239b58b80ff5bc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/86e572e8e9ec10e64d0b7455239b58b80ff5bc.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3/2b82d42278cf4a3f33e737fd3e0651abf8ddfb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3/2b82d42278cf4a3f33e737fd3e0651abf8ddfb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3/2b82d42278cf4a3f33e737fd3e0651abf8ddfb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3/6d4d1122a427f157702628c4dd1cdd5a052697.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3/6d4d1122a427f157702628c4dd1cdd5a052697.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3/6d4d1122a427f157702628c4dd1cdd5a052697.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a0/d922b8a2befb5c1fa7525b90726613917ee790.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a0/d922b8a2befb5c1fa7525b90726613917ee790.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a0/d922b8a2befb5c1fa7525b90726613917ee790.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/ad129fd7d64ccbef803f1924f08caba23e29de.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/ad129fd7d64ccbef803f1924f08caba23e29de.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/ad129fd7d64ccbef803f1924f08caba23e29de.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/705f2a0ef6b091ccf375e48e52372cbe11b234.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/705f2a0ef6b091ccf375e48e52372cbe11b234.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/705f2a0ef6b091ccf375e48e52372cbe11b234.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/bfc2017f82db50958d582b5a1075f32a45f3b7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/bfc2017f82db50958d582b5a1075f32a45f3b7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/bfc2017f82db50958d582b5a1075f32a45f3b7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/a55296a83ab630f3fa6bdd0272447a7621fcdd.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/a55296a83ab630f3fa6bdd0272447a7621fcdd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/a55296a83ab630f3fa6bdd0272447a7621fcdd.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/f3dd66c8ac77b651b48571255384df4a120eed.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/f3dd66c8ac77b651b48571255384df4a120eed.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/f3dd66c8ac77b651b48571255384df4a120eed.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/afb023dbb7e53bc45c54f618c5ec74c02f5021.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/afb023dbb7e53bc45c54f618c5ec74c02f5021.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/afb023dbb7e53bc45c54f618c5ec74c02f5021.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/bac9c6a0997e7da5955b83361df6232fc0896f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/bac9c6a0997e7da5955b83361df6232fc0896f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/bac9c6a0997e7da5955b83361df6232fc0896f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/3ec535a46426982a34c11505bcd0e937b50c36.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/3ec535a46426982a34c11505bcd0e937b50c36.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/3ec535a46426982a34c11505bcd0e937b50c36.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/70 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/70/d860449a361c99e449cfd16e79fde8e0b18ef5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/70/d860449a361c99e449cfd16e79fde8e0b18ef5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/70/d860449a361c99e449cfd16e79fde8e0b18ef5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/76 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/76/35e501baf1f0d2b781c98ee019ba3cc8ddc690.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/76/35e501baf1f0d2b781c98ee019ba3cc8ddc690.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/76/35e501baf1f0d2b781c98ee019ba3cc8ddc690.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/fbb2168541288d7c6f99041d03f2eba7604157.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/fbb2168541288d7c6f99041d03f2eba7604157.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/fbb2168541288d7c6f99041d03f2eba7604157.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/4ac01c4a38c0f98e2447bfc0dc13b5993ff7c4.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/4ac01c4a38c0f98e2447bfc0dc13b5993ff7c4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/4ac01c4a38c0f98e2447bfc0dc13b5993ff7c4.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d/b4b30dd269f9d874038bde1597fc80479b91c3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d/b4b30dd269f9d874038bde1597fc80479b91c3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d/b4b30dd269f9d874038bde1597fc80479b91c3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/d45b8ca36952468e377b0133390982b5345516.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/d45b8ca36952468e377b0133390982b5345516.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/d45b8ca36952468e377b0133390982b5345516.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/73 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/73/6c77133c997938846916c96ae3757afc728e9c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/73/6c77133c997938846916c96ae3757afc728e9c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/73/6c77133c997938846916c96ae3757afc728e9c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f9/417cb6305f46cfb2ccd61a20573d283f722c19.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f9/417cb6305f46cfb2ccd61a20573d283f722c19.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f9/417cb6305f46cfb2ccd61a20573d283f722c19.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a8/daf8a0f953169277dbfa521864ba57cb4af26e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a8/daf8a0f953169277dbfa521864ba57cb4af26e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a8/daf8a0f953169277dbfa521864ba57cb4af26e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d3/ba2a38658649ead8decbd3afc93d35bc1eb2f4.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d3/ba2a38658649ead8decbd3afc93d35bc1eb2f4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d3/ba2a38658649ead8decbd3afc93d35bc1eb2f4.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a/5d4cf1c149d881264855916aaf20ba9be02a78.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a/5d4cf1c149d881264855916aaf20ba9be02a78.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a/5d4cf1c149d881264855916aaf20ba9be02a78.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/af5a09893766545169c4dbc7b87f871bd94fe9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/af5a09893766545169c4dbc7b87f871bd94fe9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/af5a09893766545169c4dbc7b87f871bd94fe9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a/8f3d78c2c9b4f59348241e586aa439ac3133d9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a/8f3d78c2c9b4f59348241e586aa439ac3133d9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a/8f3d78c2c9b4f59348241e586aa439ac3133d9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3f/4a435ee2cb0fe92458cb6f3e34ffec248fe7e9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3f/4a435ee2cb0fe92458cb6f3e34ffec248fe7e9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3f/4a435ee2cb0fe92458cb6f3e34ffec248fe7e9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5b/03b4bfa9c05c3b244329d623111c9b17858c2c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5b/03b4bfa9c05c3b244329d623111c9b17858c2c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5b/03b4bfa9c05c3b244329d623111c9b17858c2c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/c8fc526dafeed74ebc440733ee9165b81981db.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/c8fc526dafeed74ebc440733ee9165b81981db.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/c8fc526dafeed74ebc440733ee9165b81981db.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ae objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ae/1af7e5a06b201a95d326f191f338057eec6bbf.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ae/1af7e5a06b201a95d326f191f338057eec6bbf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ae/1af7e5a06b201a95d326f191f338057eec6bbf.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/df256e4c439edb6507f04a7d784936fee013ae.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/df256e4c439edb6507f04a7d784936fee013ae.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/df256e4c439edb6507f04a7d784936fee013ae.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/741e7189693cf929d99a7cbd3f0026ec35dc63.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/741e7189693cf929d99a7cbd3f0026ec35dc63.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/741e7189693cf929d99a7cbd3f0026ec35dc63.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c/504b86065a05b660357dccd5db0233c07aa896.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c/504b86065a05b660357dccd5db0233c07aa896.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c/504b86065a05b660357dccd5db0233c07aa896.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/f0d0237d68a52585558d576994e41e3616b217.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/f0d0237d68a52585558d576994e41e3616b217.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/f0d0237d68a52585558d576994e41e3616b217.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/b23ed2a5a6152c163cdc76a485e4b12a10ca80.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/b23ed2a5a6152c163cdc76a485e4b12a10ca80.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/b23ed2a5a6152c163cdc76a485e4b12a10ca80.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81/113325dfd680a13d9246499a9f4e7ce005f9b3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81/113325dfd680a13d9246499a9f4e7ce005f9b3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81/113325dfd680a13d9246499a9f4e7ce005f9b3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08/6ad8b3a053b7a44447b43b352037457a1ae7cb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08/6ad8b3a053b7a44447b43b352037457a1ae7cb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08/6ad8b3a053b7a44447b43b352037457a1ae7cb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/995577f6ae1a643f9808f64365da8642bb493b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/995577f6ae1a643f9808f64365da8642bb493b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/995577f6ae1a643f9808f64365da8642bb493b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/58cc281f54ca142b1198c26fb403e3fc068f99.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/58cc281f54ca142b1198c26fb403e3fc068f99.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/58cc281f54ca142b1198c26fb403e3fc068f99.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/94 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/94/c70bbfdb47b39c2f8209010b7fb3ec199db5fb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/94/c70bbfdb47b39c2f8209010b7fb3ec199db5fb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/94/c70bbfdb47b39c2f8209010b7fb3ec199db5fb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/7f779bf45fea9ee4e1ddde000c0d65eef4537e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/7f779bf45fea9ee4e1ddde000c0d65eef4537e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/7f779bf45fea9ee4e1ddde000c0d65eef4537e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f/a1d1a0db8507c1330f333e6cf77325e6693001.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f/a1d1a0db8507c1330f333e6cf77325e6693001.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f/a1d1a0db8507c1330f333e6cf77325e6693001.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97/f322f128bd1401449e58f44d949961f652d25a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97/f322f128bd1401449e58f44d949961f652d25a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97/f322f128bd1401449e58f44d949961f652d25a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/454113d7f45442332925444e2a30943da8b7bb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/454113d7f45442332925444e2a30943da8b7bb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/454113d7f45442332925444e2a30943da8b7bb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/4039772c2f2b276287a0aa939793239e231f6d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/4039772c2f2b276287a0aa939793239e231f6d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/4039772c2f2b276287a0aa939793239e231f6d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/b8ca96b332ae2f1a13b8bfc27af7b17f830846.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/b8ca96b332ae2f1a13b8bfc27af7b17f830846.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/b8ca96b332ae2f1a13b8bfc27af7b17f830846.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/690baa4efff0e9bbdc25afdec339efbbf32ce0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/690baa4efff0e9bbdc25afdec339efbbf32ce0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/690baa4efff0e9bbdc25afdec339efbbf32ce0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47/08aa37a45352ff31dfcf5dda598c8c9f1c1092.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47/08aa37a45352ff31dfcf5dda598c8c9f1c1092.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47/08aa37a45352ff31dfcf5dda598c8c9f1c1092.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6/2d2ec5059a201bcf95d5ecf78728602856d865.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6/2d2ec5059a201bcf95d5ecf78728602856d865.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6/2d2ec5059a201bcf95d5ecf78728602856d865.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/40407afe5358c9fe4786d24901904d243f8468.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/40407afe5358c9fe4786d24901904d243f8468.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/40407afe5358c9fe4786d24901904d243f8468.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/ddecab1dacaac54d863638d2b4f4dd22aa9480.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/ddecab1dacaac54d863638d2b4f4dd22aa9480.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/ddecab1dacaac54d863638d2b4f4dd22aa9480.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f8/3253f79a85d3594d44b6a96307201f1280bb4a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f8/3253f79a85d3594d44b6a96307201f1280bb4a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f8/3253f79a85d3594d44b6a96307201f1280bb4a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/3471eea7fce4ed81ee477e8d2f3f60cde8cbd9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/3471eea7fce4ed81ee477e8d2f3f60cde8cbd9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/3471eea7fce4ed81ee477e8d2f3f60cde8cbd9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3f/1df33930f18b1c6adb0924bfef4f38b913d4af.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3f/1df33930f18b1c6adb0924bfef4f38b913d4af.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3f/1df33930f18b1c6adb0924bfef4f38b913d4af.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/35 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/35/46f7ff76a96b3ec3d5edb4b4950e3504c286e7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/35/46f7ff76a96b3ec3d5edb4b4950e3504c286e7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/35/46f7ff76a96b3ec3d5edb4b4950e3504c286e7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/5c0cdd718f1e62f5bad593a4462bcc34854778.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/5c0cdd718f1e62f5bad593a4462bcc34854778.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/5c0cdd718f1e62f5bad593a4462bcc34854778.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/22f5c31ae75f987895ea5c912bc5cbf794b12d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/22f5c31ae75f987895ea5c912bc5cbf794b12d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/22f5c31ae75f987895ea5c912bc5cbf794b12d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/8c644665c4ae75bffccf97068ac51c9408c6e5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/8c644665c4ae75bffccf97068ac51c9408c6e5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/8c644665c4ae75bffccf97068ac51c9408c6e5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/37 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/37/53451ca39c01b9f8b66d4a68687b04743076bc.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/37/53451ca39c01b9f8b66d4a68687b04743076bc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/37/53451ca39c01b9f8b66d4a68687b04743076bc.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c/40bba3fbc531cf8e7be8dfdf214f77fb800dfc.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c/40bba3fbc531cf8e7be8dfdf214f77fb800dfc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c/40bba3fbc531cf8e7be8dfdf214f77fb800dfc.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/7507aa5b1d087f7840fc46e40e53d2e3cf7a9e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/7507aa5b1d087f7840fc46e40e53d2e3cf7a9e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/7507aa5b1d087f7840fc46e40e53d2e3cf7a9e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/5f07bc2856d4fe016754edebbfea6d0908e2a9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/5f07bc2856d4fe016754edebbfea6d0908e2a9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/5f07bc2856d4fe016754edebbfea6d0908e2a9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff/841425e0e01ea86c2fd6d0be7ca46163ee1bd0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff/841425e0e01ea86c2fd6d0be7ca46163ee1bd0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff/841425e0e01ea86c2fd6d0be7ca46163ee1bd0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/93f6a3579e1a52a5f98c17cf2751c3e7e618fe.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/93f6a3579e1a52a5f98c17cf2751c3e7e618fe.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/93f6a3579e1a52a5f98c17cf2751c3e7e618fe.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd/a9d7759b5addf9c7ad4855565f0c580ce94f4f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd/a9d7759b5addf9c7ad4855565f0c580ce94f4f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd/a9d7759b5addf9c7ad4855565f0c580ce94f4f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/5112f744f02ccd4b5449fc8f6389023f72a6c5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/5112f744f02ccd4b5449fc8f6389023f72a6c5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/5112f744f02ccd4b5449fc8f6389023f72a6c5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/5529668a6d96be06c052e55bce9022c06d4032.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/5529668a6d96be06c052e55bce9022c06d4032.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/5529668a6d96be06c052e55bce9022c06d4032.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/be89efea2e81b29b4c265b08fab6fb0a97a246.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/be89efea2e81b29b4c265b08fab6fb0a97a246.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/be89efea2e81b29b4c265b08fab6fb0a97a246.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/07a016e5fe11684c44e8bf6ec77dbdd3dad128.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/07a016e5fe11684c44e8bf6ec77dbdd3dad128.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/07a016e5fe11684c44e8bf6ec77dbdd3dad128.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/13 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/13/7719ebdd0be9e80d1b5aea79dd113e3259d925.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/13/7719ebdd0be9e80d1b5aea79dd113e3259d925.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/13/7719ebdd0be9e80d1b5aea79dd113e3259d925.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56/b650cea6bb670863c68fc78d0e2d8341bf3d83.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56/b650cea6bb670863c68fc78d0e2d8341bf3d83.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56/b650cea6bb670863c68fc78d0e2d8341bf3d83.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/f1e0e24a2afd4fddc10965554f75a2236ed692.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/f1e0e24a2afd4fddc10965554f75a2236ed692.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/f1e0e24a2afd4fddc10965554f75a2236ed692.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/02ca118202f1b3e03dc596a50b86e9fa9a2547.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/02ca118202f1b3e03dc596a50b86e9fa9a2547.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/02ca118202f1b3e03dc596a50b86e9fa9a2547.debug debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/f2e2cf69bf7dfb6c265d2c5e090f7d9f330321.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/f2e2cf69bf7dfb6c265d2c5e090f7d9f330321.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/f2e2cf69bf7dfb6c265d2c5e090f7d9f330321.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5/26bcc5aa6635d82d118a7b22bfe21be73bb28c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5/26bcc5aa6635d82d118a7b22bfe21be73bb28c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5/26bcc5aa6635d82d118a7b22bfe21be73bb28c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/802934d778666ee5c056d6f07fcd240abb81a3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/802934d778666ee5c056d6f07fcd240abb81a3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/802934d778666ee5c056d6f07fcd240abb81a3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ad objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ad/5b82272ae64a8561e441f436501f9e4557333f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ad/5b82272ae64a8561e441f436501f9e4557333f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ad/5b82272ae64a8561e441f436501f9e4557333f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/86a8813e685ffc0bdeb853d708bc3202855941.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/86a8813e685ffc0bdeb853d708bc3202855941.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/86a8813e685ffc0bdeb853d708bc3202855941.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5/39ff4715467ffc4306c3ff894fdefe69c031d9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5/39ff4715467ffc4306c3ff894fdefe69c031d9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5/39ff4715467ffc4306c3ff894fdefe69c031d9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36/46ade2ee3eeac2603ab80aff258eb5762c6342.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36/46ade2ee3eeac2603ab80aff258eb5762c6342.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36/46ade2ee3eeac2603ab80aff258eb5762c6342.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/1a7ae8a254ce080893b271392f7250b11ee635.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/1a7ae8a254ce080893b271392f7250b11ee635.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/1a7ae8a254ce080893b271392f7250b11ee635.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/ead6188ddd89ad238d5b84eeb7015a1406578a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/ead6188ddd89ad238d5b84eeb7015a1406578a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/ead6188ddd89ad238d5b84eeb7015a1406578a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b9/17f47f6bb0ae6dcdd93a1598e18f2671b17fe3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b9/17f47f6bb0ae6dcdd93a1598e18f2671b17fe3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b9/17f47f6bb0ae6dcdd93a1598e18f2671b17fe3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8/68c498231d5f6bc41b06d4cc519e43d606ed90.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8/68c498231d5f6bc41b06d4cc519e43d606ed90.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8/68c498231d5f6bc41b06d4cc519e43d606ed90.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a/2490304c6b9c96fb0ce4d98d5f6972f2b2b3af.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a/2490304c6b9c96fb0ce4d98d5f6972f2b2b3af.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a/2490304c6b9c96fb0ce4d98d5f6972f2b2b3af.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fe objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fe/87e9698b681a6cd94c6637a1dfaf2129f00be3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fe/87e9698b681a6cd94c6637a1dfaf2129f00be3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fe/87e9698b681a6cd94c6637a1dfaf2129f00be3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8/755ac03700b8b19d04db0b5452b2d6e6f9d87f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8/755ac03700b8b19d04db0b5452b2d6e6f9d87f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8/755ac03700b8b19d04db0b5452b2d6e6f9d87f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a/f2009f6b243f96607fa60451605cab23db5c40.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a/f2009f6b243f96607fa60451605cab23db5c40.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a/f2009f6b243f96607fa60451605cab23db5c40.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fa objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fa/f48e025680c8644984fd4b0f43d627af83b215.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fa/f48e025680c8644984fd4b0f43d627af83b215.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fa/f48e025680c8644984fd4b0f43d627af83b215.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/5fe370f06ecd480a14af6965dd7a4f108760eb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/5fe370f06ecd480a14af6965dd7a4f108760eb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/5fe370f06ecd480a14af6965dd7a4f108760eb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1c/4d3f5118f330313c1b82af8f89d50089c34cd4.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1c/4d3f5118f330313c1b82af8f89d50089c34cd4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1c/4d3f5118f330313c1b82af8f89d50089c34cd4.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/2c83e931fe3d59d0fae68f77897ce534416b05.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/2c83e931fe3d59d0fae68f77897ce534416b05.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/2c83e931fe3d59d0fae68f77897ce534416b05.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/f714ac4e621a4fa8bc61bed25f85ee8d228091.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/f714ac4e621a4fa8bc61bed25f85ee8d228091.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/f714ac4e621a4fa8bc61bed25f85ee8d228091.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/19 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/19/6d8a6c159f79ce296607b73647cd6630093b3f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/19/6d8a6c159f79ce296607b73647cd6630093b3f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/19/6d8a6c159f79ce296607b73647cd6630093b3f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/5c4f62b3198fe204e4fc8393d67faa3f9b0047.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/5c4f62b3198fe204e4fc8393d67faa3f9b0047.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/5c4f62b3198fe204e4fc8393d67faa3f9b0047.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3b/af2ce550a64ceca0788e307beac00c554ea4ad.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3b/af2ce550a64ceca0788e307beac00c554ea4ad.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3b/af2ce550a64ceca0788e307beac00c554ea4ad.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/06276e4c9d529bbd59e7b602d97ed5d35b90b0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/06276e4c9d529bbd59e7b602d97ed5d35b90b0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/06276e4c9d529bbd59e7b602d97ed5d35b90b0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c/d09d07220a905959592f487cf4c1a032d3f628.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c/d09d07220a905959592f487cf4c1a032d3f628.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c/d09d07220a905959592f487cf4c1a032d3f628.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/29b757d6bbe803afc754e9bbde1d62eaf7d9ca.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/29b757d6bbe803afc754e9bbde1d62eaf7d9ca.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/29b757d6bbe803afc754e9bbde1d62eaf7d9ca.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/088821c0c5f26cc261306588d7c9012c899908.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/088821c0c5f26cc261306588d7c9012c899908.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/088821c0c5f26cc261306588d7c9012c899908.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00/84ae219f033f9ffa7322c4d0ad70d6cb7c66b3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00/84ae219f033f9ffa7322c4d0ad70d6cb7c66b3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00/84ae219f033f9ffa7322c4d0ad70d6cb7c66b3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/fbc78163aecfa17edd0b527506fbe0d52aa67e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/fbc78163aecfa17edd0b527506fbe0d52aa67e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/fbc78163aecfa17edd0b527506fbe0d52aa67e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/75c1d700355c06751b61c8039f2c17b9bd7f94.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/75c1d700355c06751b61c8039f2c17b9bd7f94.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/75c1d700355c06751b61c8039f2c17b9bd7f94.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d/82411ffb6348dc18b69f9fbedf5446580435aa.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d/82411ffb6348dc18b69f9fbedf5446580435aa.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d/82411ffb6348dc18b69f9fbedf5446580435aa.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/c166fd033543960b5c308cf2a082c211659243.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/c166fd033543960b5c308cf2a082c211659243.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/c166fd033543960b5c308cf2a082c211659243.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/1c71275e0c55a4704064db84744855b502e505.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/1c71275e0c55a4704064db84744855b502e505.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/1c71275e0c55a4704064db84744855b502e505.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/13f96d189a9a9b3dff5c768fdca36fd36b9c82.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/13f96d189a9a9b3dff5c768fdca36fd36b9c82.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/13f96d189a9a9b3dff5c768fdca36fd36b9c82.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/57404ab4740801b90b820aa2989b3bc5a6eb45.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/57404ab4740801b90b820aa2989b3bc5a6eb45.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/57404ab4740801b90b820aa2989b3bc5a6eb45.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/9ea96f96fce7f0560378921ed6ed882b43b4f7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/9ea96f96fce7f0560378921ed6ed882b43b4f7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/9ea96f96fce7f0560378921ed6ed882b43b4f7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ae objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ae/8f874b1b62b2f5d9886b44c97a32a52dbfcf80.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ae/8f874b1b62b2f5d9886b44c97a32a52dbfcf80.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ae/8f874b1b62b2f5d9886b44c97a32a52dbfcf80.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1/7c1788e041452eb7e69a544b1dbc8ca304eb44.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1/7c1788e041452eb7e69a544b1dbc8ca304eb44.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1/7c1788e041452eb7e69a544b1dbc8ca304eb44.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/624dffc7f823969ddc9a1e9e38cbdbf6d7ec28.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/624dffc7f823969ddc9a1e9e38cbdbf6d7ec28.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/624dffc7f823969ddc9a1e9e38cbdbf6d7ec28.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36/9f9ac6f8abc85cd86782c9589d7d93483e8476.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36/9f9ac6f8abc85cd86782c9589d7d93483e8476.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36/9f9ac6f8abc85cd86782c9589d7d93483e8476.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/f08c24b7fafb86d14192d68905bf5ab1316184.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/f08c24b7fafb86d14192d68905bf5ab1316184.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/f08c24b7fafb86d14192d68905bf5ab1316184.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/b7f5b55904bcc1b78394d0f951301f2d88c697.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/b7f5b55904bcc1b78394d0f951301f2d88c697.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/b7f5b55904bcc1b78394d0f951301f2d88c697.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7f/923ac495a011bcda605c945f6c0e0a4811952c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7f/923ac495a011bcda605c945f6c0e0a4811952c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0/b0388853fe866ac6077e1aa9486e3698bf1554.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ca objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ca/77e37ed2b228810c2417ab630bf7377f340dc6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ca/77e37ed2b228810c2417ab630bf7377f340dc6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ca/77e37ed2b228810c2417ab630bf7377f340dc6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/54 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/54/ae773de63aefa2b86458a7c393210d0c443bb3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/54/ae773de63aefa2b86458a7c393210d0c443bb3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6e/b1792a246347a19df23af8561d238b39336328.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/ca67ba80d2e6deeae7621f52a568bb91111b03.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/ca67ba80d2e6deeae7621f52a568bb91111b03.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/ca67ba80d2e6deeae7621f52a568bb91111b03.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/53c632c87f726cba5906eb8f48ca16e028a1fa.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/53c632c87f726cba5906eb8f48ca16e028a1fa.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/53c632c87f726cba5906eb8f48ca16e028a1fa.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/53cd173b61b53fd52e197600bbb6733386e4d9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/53cd173b61b53fd52e197600bbb6733386e4d9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/73/bc2dc9196bbe8d4d30f3df68729b6310879d4a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/fa8c9d440bcd6e39b6ba08a5a77b03c7acd3de.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/fa8c9d440bcd6e39b6ba08a5a77b03c7acd3de.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/fa8c9d440bcd6e39b6ba08a5a77b03c7acd3de.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e0/a34372339c5be433fa0002c43c1d5c5a52ffdf.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e0/a34372339c5be433fa0002c43c1d5c5a52ffdf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e0/a34372339c5be433fa0002c43c1d5c5a52ffdf.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac/18b1e6a3c5a6f57fc7ec326344ad0710437bff.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac/18b1e6a3c5a6f57fc7ec326344ad0710437bff.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac/18b1e6a3c5a6f57fc7ec326344ad0710437bff.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/51eeea7b59e7d8c38f0a17a98992b717c82709.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/51eeea7b59e7d8c38f0a17a98992b717c82709.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so objcopy --add-gnu-debuglink 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.find_distances debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc/b58661d52023808052011287742c9901eab9bd.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc/b58661d52023808052011287742c9901eab9bd.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/bin/cctbx.find_distances objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc/b58661d52023808052011287742c9901eab9bd.debug debian/python3-cctbx/usr/bin/cctbx.find_distances install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/9d20877c2e1bff3a411c9440a2155748eceaf2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/9d20877c2e1bff3a411c9440a2155748eceaf2.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/9d20877c2e1bff3a411c9440a2155748eceaf2.debug debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/17a2d5ee60c8d170e580e595e9b72218d161e1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/17a2d5ee60c8d170e580e595e9b72218d161e1.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/17a2d5ee60c8d170e580e595e9b72218d161e1.debug debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/4755c28f344b7a8b943bbf0645d55fe264cfb2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/4755c28f344b7a8b943bbf0645d55fe264cfb2.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/4755c28f344b7a8b943bbf0645d55fe264cfb2.debug debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx_blobs debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/5f2662c2912d44149628b12b68c73d6fa5b86a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/5f2662c2912d44149628b12b68c73d6fa5b86a.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/bin/cctbx_blobs objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/5f2662c2912d44149628b12b68c73d6fa5b86a.debug debian/python3-cctbx/usr/bin/cctbx_blobs install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/9af1124deed378f731010a24a6f5065f1f4a27.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/9af1124deed378f731010a24a6f5065f1f4a27.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/9af1124deed378f731010a24a6f5065f1f4a27.debug debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cbflib.tst_memory debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c7/05a275e82367c316b77aa7e8437b5a449b70c2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c7/05a275e82367c316b77aa7e8437b5a449b70c2.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/bin/cbflib.tst_memory objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c7/05a275e82367c316b77aa7e8437b5a449b70c2.debug debian/python3-cctbx/usr/bin/cbflib.tst_memory install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.getting_started debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03/8817709b116c1d32ecdae6d797ff12551f3c36.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03/8817709b116c1d32ecdae6d797ff12551f3c36.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/bin/cctbx.getting_started objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03/8817709b116c1d32ecdae6d797ff12551f3c36.debug debian/python3-cctbx/usr/bin/cctbx.getting_started install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-cctbx/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-cctbx/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-cctbx/usr/lib/debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/share/doc ln -s python3-cctbx debian/.debhelper/python3-cctbx/dbgsym-root/usr/share/doc/python3-cctbx-dbgsym install -m0755 -d debian/.debhelper/python3-cctbx dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/libcctbx0/DEBIAN/shlibs install -m0755 -d debian/libcctbx0/DEBIAN echo "libann_adaptor 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libasymmetric_map 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcbf-private 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libccp4io 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcctbx 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcctbx_sgtbx_asu 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libdxtbxspotfinder 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_mtz 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_pdb 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_xplor 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libmmtbx_masks 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libmmtbx_tls 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libomptbx 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "librstbx 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_boost_python 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_minpack 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_slatec 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libsmtbx_refinement_constraints 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libspotfinder 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libxcif 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs chmod 0644 -- debian/libcctbx0/DEBIAN/shlibs mv debian/.debhelper/generated/libcctbx0/triggers.new debian/.debhelper/generated/libcctbx0/triggers rm -f debian/libcctbx-dev/DEBIAN/shlibs rm -f debian/python3-cctbx/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN dpkg-shlibdeps -Tdebian/libcctbx0.substvars debian/libcctbx0/usr/lib/x86_64-linux-gnu/libccp4io.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libomptbx.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/librstbx.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libxcif.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libasymmetric_map.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libcbf-private.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libcctbx.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libann_adaptor.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_slatec.so.0.0.1 install -m0755 -d debian/python3-cctbx/DEBIAN dpkg-shlibdeps -Tdebian/python3-cctbx.substvars debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.14/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/math/tests/tst debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/error/tst_error debian/python3-cctbx/usr/bin/cctbx.find_distances debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debian/python3-cctbx/usr/bin/cctbx_blobs debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debian/python3-cctbx/usr/bin/cbflib.tst_memory debian/python3-cctbx/usr/bin/cctbx.getting_started dpkg-shlibdeps: warning: symbol PyImport_ImportModule used by debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_RuntimeError used by debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_CallFunction used by debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyRange_Type: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyRange_Type: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_InternInPlace: it is probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Next: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it is probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBytes_Size: it is probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Clear: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBytes_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Next: it is probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBytes_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 34 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Next: it is probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyObject_CallFunction: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 55 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyObject_CallFunction: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyComplex_FromDoubles: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyType_Ready: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyCapsule_GetPointer: it is probably a plugin dpkg-shlibdeps: warning: 139 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_GetItem: it is probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyExc_RuntimeError: it is probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBytes_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 32 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyObject_HasAttrString: it is probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-x86_64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN install -p -m0644 debian/.debhelper/generated/libcctbx0/triggers debian/libcctbx0/DEBIAN/triggers install -m0755 -d debian/libcctbx-dev/DEBIAN install -m0755 -d debian/python3-cctbx/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-cctbx/DEBIAN/postinst cat debian/python3-cctbx.postinst.debhelper >> debian/python3-cctbx/DEBIAN/postinst chmod 0755 -- debian/python3-cctbx/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-cctbx/DEBIAN/prerm cat debian/python3-cctbx.prerm.debhelper >> debian/python3-cctbx/DEBIAN/prerm chmod 0755 -- debian/python3-cctbx/DEBIAN/prerm dh_numpy3 -a -O--buildsystem=pybuild Possible precedence problem between ! and pattern match (m//) at /usr/bin/dh_numpy3 line 68. dh_numpy3: skipping binary package libcctbx0 which does not depend on the NumPy C ABI dh_numpy3: skipping binary package libcctbx-dev which does not depend on the NumPy C ABI mv debian/python3-cctbx.substvars.new debian/python3-cctbx.substvars dh_gencontrol -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx-dev/DEBIAN echo misc:Depends= >> debian/libcctbx-dev.substvars echo misc:Pre-Depends= >> debian/libcctbx-dev.substvars dpkg-gencontrol -plibcctbx-dev -ldebian/changelog -Tdebian/libcctbx-dev.substvars -cdebian/control -Pdebian/libcctbx-dev install -m0755 -d debian/libcctbx0/DEBIAN echo misc:Depends= >> debian/libcctbx0.substvars echo misc:Pre-Depends= >> debian/libcctbx0.substvars install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN dpkg-gencontrol -plibcctbx0 -ldebian/changelog -Tdebian/libcctbx0.substvars -cdebian/control -Pdebian/.debhelper/libcctbx0/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libcctbx0-dbgsym -DDepends="libcctbx0 (= \${binary:Version})" -DDescription="debug symbols for libcctbx0" -DBuild-Ids="0427bb9fe7f5912913e940b9f0d5ada75ac22b14 197b00481ddbb4efe5e5fe2cdf77a1e52dccb6ed 3e5d9e181c83b3a3c11efa83007b6ec827f432df 5a2940f7aabb49fc981948d41c483e728ddacd5e 5d11a940794d818b68cd21b609ebf7329c6ede4c 62d136275e8d74fa634aefdab92c17d22c32d6b2 650270c1c75f56d9b3612559d18fdaa577ae0d05 759344eb5ed628b27427f892088ea3a8042e65a6 7bd28910fe6b6e4508ee4f93a6281784bff532b3 925342697e094bfa70eba84478e716c3fb6410f7 9ae5eccb5516c68fc001a5389eda4a94ce3a794f a2c8c24a549b741d598447b614ffaafafc00cfd2 a66b40176d440a53bab88ab4b5481efceacba1cc ac0245e637ba7c48abad4009de4702d3266f4f85 bf4105d040280472cf6902df8e9163d81751cdf2 c2e27fc83315e4a38bb5b6d27da9c101a072acec d0f08e22123f6fb0ffe3f73a3a544077d77d33ea e5cd0f1e2ba1d6fcf17500d9ab93448a11812e86 f081e913bb5700006e3ccde689c3d296ed71b86a f91a8c376ddd2f222ed9630476ade543ffa54ee9" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/python3-cctbx/DEBIAN echo misc:Depends= >> debian/python3-cctbx.substvars echo misc:Pre-Depends= >> debian/python3-cctbx.substvars install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-cctbx -ldebian/changelog -Tdebian/python3-cctbx.substvars -cdebian/control -Pdebian/.debhelper/python3-cctbx/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-cctbx-dbgsym -DDepends="python3-cctbx (= \${binary:Version})" -DDescription="debug symbols for python3-cctbx" -DBuild-Ids="0084ae219f033f9ffa7322c4d0ad70d6cb7c66b3 031e4545f4bdbeb64c65e5c4dd669fca4a099114 038817709b116c1d32ecdae6d797ff12551f3c36 086ad8b3a053b7a44447b43b352037457a1ae7cb 09f0d0237d68a52585558d576994e41e3616b217 0c8ebd52eb94a731d7101333fa11c1a66372dcc5 0f740ab5b85af31f844b86b64281f024a7bba2a8 1182ac56ad0ed99d346e23fc764492f2adb0f0d0 11af5a09893766545169c4dbc7b87f871bd94fe9 124cee6e86d17ee7cab38e872b261217d3cb400b 12c7c57696520d18fb3ca844d2b99a8dbfb28661 137719ebdd0be9e80d1b5aea79dd113e3259d925 1578edfce93225b0cc0d28bb8533943015928c46 171c71275e0c55a4704064db84744855b502e505 174755c28f344b7a8b943bbf0645d55fe264cfb2 17802934d778666ee5c056d6f07fcd240abb81a3 196d8a6c159f79ce296607b73647cd6630093b3f 1a1a7ae8a254ce080893b271392f7250b11ee635 1a9ea96f96fce7f0560378921ed6ed882b43b4f7 1b59f717dc3cb11930760ac78295881270e3d7e0 1c4d3f5118f330313c1b82af8f89d50089c34cd4 1d705f2a0ef6b091ccf375e48e52372cbe11b234 1e9af1124deed378f731010a24a6f5065f1f4a27 1f23932e50abde2a246e427089ca96858b1ef2ad 235185e55277ad289ffb7d595a2c8eef89382615 2402ca118202f1b3e03dc596a50b86e9fa9a2547 24d5a451b8115b110d7d747e3a6fd5111e336ce1 25a4f8a94957ca19f43fa36fc4db28834fec1163 25ad129fd7d64ccbef803f1924f08caba23e29de 25c166fd033543960b5c308cf2a082c211659243 264039772c2f2b276287a0aa939793239e231f6d 267507aa5b1d087f7840fc46e40e53d2e3cf7a9e 2813f96d189a9a9b3dff5c768fdca36fd36b9c82 2af2009f6b243f96607fa60451605cab23db5c40 2d7ace49884b59c15eb58a4c3d4535210e6d990e 2e3ec535a46426982a34c11505bcd0e937b50c36 2f3a096f48e809ed0617d287306718c798dec0a2 30931e0b44e86bfec3a58cdf56e40ef0f8bedee5 3329b757d6bbe803afc754e9bbde1d62eaf7d9ca 3546f7ff76a96b3ec3d5edb4b4950e3504c286e7 3646ade2ee3eeac2603ab80aff258eb5762c6342 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4d82411ffb6348dc18b69f9fbedf5446580435aa 4ed87ab70db470e008b18510f146be611a298803 514ac01c4a38c0f98e2447bfc0dc13b5993ff7c4 546caa38d23290df3173f1d1d63b01333070fa4f 54ae773de63aefa2b86458a7c393210d0c443bb3 566bedf0cbe5fd00d3bdb9542bc594d32553fece 56b650cea6bb670863c68fc78d0e2d8341bf3d83 578c9b23c2d4083df885987f6d2168580b712683 58bac9c6a0997e7da5955b83361df6232fc0896f 58f8548d21bbebdc0d553d970aba82c4890e17ae 5a5f07bc2856d4fe016754edebbfea6d0908e2a9 5a692084f4780f2127625d85d20663b13db3683f 5b03b4bfa9c05c3b244329d623111c9b17858c2c 5fa1d1a0db8507c1330f333e6cf77325e6693001 675c0cdd718f1e62f5bad593a4462bcc34854778 681d72a9af2ee55264dc8e4bbb92e570cc0a57b3 68f2e2cf69bf7dfb6c265d2c5e090f7d9f330321 6a5d4cf1c149d881264855916aaf20ba9be02a78 6bce1a3656de8391a056747348c16eb59b1ca934 6bf9f7004986e2040dea2b528a1f2d54857fa775 6cad655a82c52612c122de87fdbc5fb3d84b59aa 6d22f5c31ae75f987895ea5c912bc5cbf794b12d 6eb1792a246347a19df23af8561d238b39336328 6ebd6ffda0d70bb465e1e731eff3e6351b9f44aa 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cb4075b1ca0eae5ed6533b99ebd6cc6a860ef55d cc848e6401ab7243673577396a1298e36c88f126 cd8841025189fb93e4482f05e1f3a90df64cbc7e cda9d7759b5addf9c7ad4855565f0c580ce94f4f ceca67ba80d2e6deeae7621f52a568bb91111b03 cf5af1c907c35c4bdb16a6f01db8a49b7002d358 d3ba2a38658649ead8decbd3afc93d35bc1eb2f4 d606276e4c9d529bbd59e7b602d97ed5d35b90b0 d62c83e931fe3d59d0fae68f77897ce534416b05 d8755ac03700b8b19d04db0b5452b2d6e6f9d87f d98395c70f5aff95add7efa5f48fbfe792c144ed d9f3dd66c8ac77b651b48571255384df4a120eed dab7f5b55904bcc1b78394d0f951301f2d88c697 db3471eea7fce4ed81ee477e8d2f3f60cde8cbd9 dbf714ac4e621a4fa8bc61bed25f85ee8d228091 deb8fff553dfbcd7675bfbaed74b6812dbcc2ea4 e0a34372339c5be433fa0002c43c1d5c5a52ffdf e32b82d42278cf4a3f33e737fd3e0651abf8ddfb e6b4231d1744cfa9c9d99c641d284c9b5ea9f296 e7982c5c0e403ce5726935e90a969f801a406696 e7a4216597791f2db8997cb48db4b954b7944acc e85fe370f06ecd480a14af6965dd7a4f108760eb ea729bb014075ed7933444989f4bcf5384be4ad0 ea86e572e8e9ec10e64d0b7455239b58b80ff5bc ec42d1d3349ba9c7481eaf8e1be1d57f72535db3 ec58cc281f54ca142b1198c26fb403e3fc068f99 f0a79082814c11d7a964e872b582e9e94a64ed59 f0b0388853fe866ac6077e1aa9486e3698bf1554 f17c1788e041452eb7e69a544b1dbc8ca304eb44 f2dba08ec387bcb850d2ed97318ecad58485d073 f347c0b1e7c390e64ff337882f163f3df52f3907 f451eeea7b59e7d8c38f0a17a98992b717c82709 f47f779bf45fea9ee4e1ddde000c0d65eef4537e f662b8aa76861c48389fc4e4bfbb3c32bfb9be76 f83253f79a85d3594d44b6a96307201f1280bb4a f9417cb6305f46cfb2ccd61a20573d283f722c19 faf48e025680c8644984fd4b0f43d627af83b215 fb1ce9e949024d02534d2aa6ebd6d9e7a79adca8 fc1c876743330c4f6fed56f3621232985eee11d2 fe87e9698b681a6cd94c6637a1dfaf2129f00be3 ff841425e0e01ea86c2fd6d0be7ca46163ee1bd0" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/libcctbx-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibcctbx0 -ldebian/changelog -Tdebian/libcctbx0.substvars -cdebian/control -Pdebian/libcctbx0 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-cctbx -ldebian/changelog -Tdebian/python3-cctbx.substvars -cdebian/control -Pdebian/python3-cctbx chmod 0644 -- debian/libcctbx0/DEBIAN/control chmod 0644 -- debian/python3-cctbx/DEBIAN/control dh_md5sums -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN install -m0755 -d debian/libcctbx-dev/DEBIAN install -m0755 -d debian/python3-cctbx/DEBIAN cd debian/libcctbx0 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libcctbx-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-cctbx >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libcctbx0/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN cd debian/.debhelper/libcctbx0/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libcctbx-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/python3-cctbx/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN cd debian/.debhelper/python3-cctbx/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/libcctbx0 .. dpkg-deb --root-owner-group --build debian/.debhelper/libcctbx0/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libcctbx-dev .. dpkg-deb --root-owner-group --build debian/python3-cctbx .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-cctbx/dbgsym-root .. dpkg-deb: building package 'libcctbx0' in '../libcctbx0_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb'. dpkg-deb: building package 'libcctbx-dev' in '../libcctbx-dev_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb'. dpkg-deb: building package 'libcctbx0-dbgsym' in '../libcctbx0-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb'. dpkg-deb: building package 'python3-cctbx' in '../python3-cctbx_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb'. dpkg-deb: building package 'python3-cctbx-dbgsym' in '../python3-cctbx-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb'. dpkg-genbuildinfo --build=any -O../cctbx_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.buildinfo dpkg-genchanges --build=any -O../cctbx_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-10-14T11:15:39Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Wed, 14 Oct 2026 11:15:40 +0000 | +------------------------------------------------------------------------------+ cctbx_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.changes: ------------------------------------------------ Format: 1.8 Date: Mon, 05 Oct 2026 19:33:30 +0000 Source: cctbx (2026.9+ds2+~3.30.1+ds1-1) Binary: libcctbx-dev libcctbx0 libcctbx0-dbgsym python3-cctbx python3-cctbx-dbgsym Binary-Only: yes Architecture: amd64 Version: 2026.9+ds2+~3.30.1+ds1-1+b1 Distribution: unstable Urgency: low Maintainer: Debian Science Maintainers Changed-By: all / amd64 / i386 Build Daemon (x86-conova-01) Description: libcctbx-dev - Computational Crystallography Toolbox - headers libcctbx0 - Computational Crystallography Toolbox - runtime libraries python3-cctbx - Python Toolbox for crystallography Changes: cctbx (2026.9+ds2+~3.30.1+ds1-1+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild against boost 1.92 Checksums-Sha1: 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ca095dbfe5b681fffc848b84f80c673d 118597260 python optional python3-cctbx_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Wed, 14 Oct 2026 11:15:40 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: cctbx (2026.9+ds2+~3.30.1+ds1-1) Binary: libcctbx-dev libcctbx0 libcctbx0-dbgsym python3-cctbx python3-cctbx-dbgsym Architecture: amd64 Version: 2026.9+ds2+~3.30.1+ds1-1+b1 Binary-Only-Changes: cctbx (2026.9+ds2+~3.30.1+ds1-1+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild against boost 1.92 . -- all / amd64 / i386 Build Daemon (x86-conova-01) Mon, 05 Oct 2026 19:33:30 +0000 Checksums-Md5: 6768733c510e372e7ba6c23cc2fb5aed 1175508 libcctbx-dev_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb 17f8adaad1cd5c7b5672b0e4b215a3f5 9993244 libcctbx0-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb 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22db05f61e774accc9298f5be425d3bc902862c95f4672baf08a015187033f7f 9993244 libcctbx0-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb 892f3f0c20ec24d15344b3086f832a2fe48fabe18fff72c8dfa76f5e1ab9bb31 2297424 libcctbx0_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb 7f8fe790a4ae8156d9ce17f2ae33242e163dd856ed35b57ada224e48d1cd85fb 146318484 python3-cctbx-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb aea4ba5abfbed68f5e6d5aaf389d6e98b3d1b3eaebb1cd8c323ec717693e6c51 118597260 python3-cctbx_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 14 Oct 2026 11:15:36 +0000 Build-Path: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 Installed-Build-Depends: adwaita-icon-theme (= 51.0-1), architecture-properties (= 0.2.6+b2), at-spi2-common (= 2.62.0-2), autoconf (= 2.73-2), automake (= 1:1.19-2), autopoint (= 1.0-5), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-4), binutils (= 2.47-6), binutils-common (= 2.47-6), binutils-x86-64-linux-gnu (= 2.47-6), bsdextrautils (= 2.42.4-1), bubblewrap (= 0.13.0-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), ca-certificates (= 20260816), comerr-dev (= 2.1-1.47.4-1+b2), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-3), cpp-16-x86-64-linux-gnu (= 16.2.0-3), cpp-x86-64-linux-gnu (= 4:16.1.0-3), dash (= 0.5.12-12), dbus (= 1.16.2-8), dbus-bin (= 1.16.2-8), dbus-daemon (= 1.16.2-8), dbus-session-bus-common (= 1.16.2-8), dbus-system-bus-common (= 1.16.2-8), dbus-user-session (= 1.16.2-8), dconf-gsettings-backend (= 51.0-2), dconf-service (= 51.0-2), debconf (= 1.5.92), debhelper (= 14.5), debianutils (= 5.24), dh-autoreconf (= 23), dh-exec (= 0.31), dh-python (= 7.20260623), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.11), dpkg-dev (= 1.23.11), dwz (= 0.17-1), fftw-dev (= 2.1.5-8), fftw2 (= 2.1.5-8), file (= 1:5.47-4), findutils (= 4.11.0-3), fontconfig (= 2.17.1-5), fontconfig-config (= 2.17.1-5), fonts-dejavu-core (= 2.37-9), fonts-dejavu-extra (= 2.37-9), fonts-dejavu-mono (= 2.37-9), fonts-font-awesome (= 7.3.0+dfsg-1), fonts-font-awesome-legacy (= 6-4), fonts-lato (= 2.015-1), fonts-lyx (= 2.5.3-1), fonts-roboto-slab (= 2.002+20231012+ds-1), fonts-urw-base35 (= 20200910-9), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-3), g++-16-x86-64-linux-gnu (= 16.2.0-3), g++-x86-64-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-3), gcc-16-base (= 16.2.0-3), gcc-16-x86-64-linux-gnu (= 16.2.0-3), gcc-x86-64-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-5), gettext-base (= 1.0-5), glycin-loaders (= 2.2.1+ds-2), glycin-thumbnailers (= 2.2.1+ds-2), grep (= 3.12-1), groff-base (= 1.24.2-2), gtk-update-icon-cache (= 4.24.1+ds-1), gzip (= 1.14-1), hdf5-helpers (= 2.2.0+repack-5), hicolor-icon-theme (= 0.18-2), hostname (= 3.25), ibverbs-providers (= 65.0-1.1), init-system-helpers (= 1.69+nmu3), intltool-debian (= 0.35.0+20060710.6), jq (= 1.8.2-1), krb5-multidev (= 1.22.1-3), libabsl20260526 (= 20260526.0-2+b1), libacl1 (= 2.4.0-1), libaec-dev (= 1.1.7-1), libaec0 (= 1.1.7-1), libamd-comgr3 (= 7.0.2+dfsg-3), libamdhip64-6 (= 6.4.3-5), libann-cctbx-dev (= 1.1.2+doc-9+b1), libann-cctbx0 (= 1.1.2+doc-9+b1), libantlr3c-3.4-0 (= 3.4+dfsg-4+b3), libantlr3c-dev (= 3.4+dfsg-4+b3), libaom3 (= 3.14.1-1), libapparmor1 (= 4.1.8-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-3), libasound2-data (= 1.2.16.1-2), libasound2t64 (= 1.2.16.1-2), libasyncns0 (= 0.8-8), libatk-bridge2.0-0t64 (= 2.62.0-2), libatk1.0-0t64 (= 2.62.0-2), libatomic1 (= 16.2.0-3), libatspi2.0-0t64 (= 2.62.0-2), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.2.1-1), libaudit1 (= 1:4.2.1-1), libavahi-client3 (= 0.8-18), libavahi-common-data (= 0.8-18), libavahi-common3 (= 0.8-18), libavif16 (= 1.4.2-1), libbinutils (= 2.47-6), libblas3 (= 3.12.1-8), libblkid1 (= 2.42.4-1), libboost-atomic1.92-dev (= 1.92.0-3), libboost-atomic1.92.0 (= 1.92.0-3), libboost-chrono1.92-dev (= 1.92.0-3), libboost-chrono1.92.0 (= 1.92.0-3), libboost-container1.92-dev (= 1.92.0-3), libboost-container1.92.0 (= 1.92.0-3), libboost-date-time1.92-dev (= 1.92.0-3), libboost-date-time1.92.0 (= 1.92.0-3), libboost-dev (= 1.92.0.1), libboost-exception1.92-dev (= 1.92.0-3), libboost-graph1.92-dev (= 1.92.0-3), libboost-graph1.92.0 (= 1.92.0-3), libboost-math1.92-dev (= 1.92.0-3), libboost-math1.92.0 (= 1.92.0-3), libboost-numpy-dev (= 1.92.0.1), libboost-numpy1.92-dev (= 1.92.0-3), libboost-numpy1.92.0 (= 1.92.0-3), libboost-python-dev (= 1.92.0.1), libboost-python1.92-dev (= 1.92.0-3), libboost-python1.92.0 (= 1.92.0-3), libboost-random1.92-dev (= 1.92.0-3), libboost-random1.92.0 (= 1.92.0-3), libboost-regex1.92-dev (= 1.92.0-3), libboost-regex1.92.0 (= 1.92.0-3), libboost-serialization1.92-dev (= 1.92.0-3), libboost-serialization1.92.0 (= 1.92.0-3), libboost-test1.92-dev (= 1.92.0-3), libboost-test1.92.0 (= 1.92.0-3), libboost-thread-dev (= 1.92.0.1), libboost-thread1.92-dev (= 1.92.0-3), libboost-thread1.92.0 (= 1.92.0-3), libboost-timer-dev (= 1.92.0.1), libboost-timer1.92-dev (= 1.92.0-3), libboost-timer1.92.0 (= 1.92.0-3), libboost1.92-dev (= 1.92.0-3), libbrotli-dev (= 1.2.0-4+b1), libbrotli1 (= 1.2.0-4+b1), libbsd0 (= 0.12.2-3), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.43-7), libc-dev-bin (= 2.43-7), libc-gconv-modules-extra (= 2.43-7), libc6 (= 2.43-7), libc6-dev (= 2.43-7), libcairo-gobject2 (= 1.18.4-3+b1), libcairo2 (= 1.18.4-3+b1), libcap-ng0 (= 0.9.6-1), libcap2 (= 1:2.78-1+b1), libcbf-dev (= 0.9.7+dfsg1-5.1+b3), libcbf1t64 (= 0.9.7+dfsg1-5.1+b3), libcc1-0 (= 16.2.0-3), libccp4-data (= 8.0.0-5), libccp4-dev (= 8.0.0-5+b1), libccp4c0t64 (= 8.0.0-5+b1), libccp4f0t64 (= 8.0.0-5+b1), libclang-common-21-dev (= 1:21.1.8-13), libclipper-dev (= 2.1.20201109-2+b4), libclipper2 (= 2.1.20201109-2+b4), libcloudproviders0 (= 0.4.1-1), libcolord2 (= 1.4.8-3), libcom-err2 (= 1.47.4-1+b2), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47-6), libctf0 (= 2.47-6), libcups2t64 (= 2.4.18-1), libcurl4-gnutls (= 8.23.0~rc2-1), libcurl4-openssl-dev (= 8.23.0~rc2-1), libcurl4t64 (= 8.23.0~rc2-1), libdatrie1 (= 0.2.14-2), libdav1d7 (= 1.5.4-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdbus-1-3 (= 1.16.2-8), libdconf1 (= 51.0-2), libde265-0 (= 1.1.3-1+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdecor-0-0 (= 0.2.5-1+b1), libdeflate-dev (= 1.25-1), libdeflate0 (= 1.25-1), libdouble-conversion3 (= 3.4.0-1+b1), libdpkg-perl (= 1.23.11), libdrm-amdgpu1 (= 2.4.134-3), libdrm-common (= 2.4.134-3), libdrm-intel1 (= 2.4.134-3), libdrm2 (= 2.4.134-3), libedit2 (= 3.1-20260512-1), libegl-mesa0 (= 26.2.4-1), libegl1 (= 1.7.0-3+b1), libeigen3-dev (= 5.0.1-3), libelf1t64 (= 0.196-1), libepoxy0 (= 1.5.10-2+b2), libesmtp6 (= 1.1.0-3.2+b2), libevdev2 (= 1.13.7+dfsg-1), libevent-2.1-7t64 (= 2.1.13-stable-1), libevent-core-2.1-7t64 (= 2.1.13-stable-1), libevent-pthreads-2.1-7t64 (= 2.1.13-stable-1), libexpat1 (= 2.9.0-1), libexpat1-dev (= 2.9.0-1), libfabric1 (= 2.1.0-1.1+b2), libffi8 (= 3.8.0-2), libfftw3-bin (= 3.3.11-1), libfftw3-dev (= 3.3.11-1), libfftw3-double3 (= 3.3.11-1), libfftw3-long3 (= 3.3.11-1), libfftw3-quad3 (= 3.3.11-1), libfftw3-single3 (= 3.3.11-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libflac14 (= 1.5.0+ds-5+b1), libfontconfig1 (= 2.17.1-5), libfontenc1 (= 1:1.1.8-1+b3), libfreetype6 (= 2.14.3+dfsg-3), libfribidi0 (= 1.0.16-5+b1), libfuse3-4 (= 3.18.3-1), libgav1-2 (= 0.20.0-2+b2), libgbm1 (= 26.2.4-1), libgcc-16-dev (= 16.2.0-3), libgcc-s1 (= 16.2.0-3), libgcrypt20 (= 1.12.4-2), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgdk-pixbuf-2.0-0 (= 2.44.8+dfsg-1), libgdk-pixbuf2.0-common (= 2.44.8+dfsg-1), libgfortran5 (= 16.2.0-3), libgl-dev (= 1.7.0-3+b1), libgl1 (= 1.7.0-3+b1), libgl1-mesa-dri (= 26.2.4-1), libgles2 (= 1.7.0-3+b1), libglew2.3 (= 2.3.1+dfsg2-5), libglib2.0-0t64 (= 2.90.1-2), libglu1-mesa (= 9.0.2-1.1+b4), libglu1-mesa-dev (= 9.0.2-1.1+b4), libglut3.12 (= 3.4.0-6+b2), libglvnd0 (= 1.7.0-3+b1), libglx-dev (= 1.7.0-3+b1), libglx-mesa0 (= 26.2.4-1), libglx0 (= 1.7.0-3+b1), libglycin-2-0 (= 2.2.1+ds-2), libgmp-dev (= 2:6.3.0+dfsg-5+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b2), libgnutls-dane0t64 (= 3.8.13-1), libgnutls28-dev (= 3.8.13-1), libgnutls30t64 (= 3.8.13-1), libgomp1 (= 16.2.0-3), libgpg-error0 (= 1.61-5), libgprofng0 (= 2.47-6), libgraphite2-3 (= 1.3.15-2), libgssapi-krb5-2 (= 1.22.1-3), libgssrpc4t64 (= 1.22.1-3), libgtk-3-0t64 (= 3.24.52-2), libgtk-3-common (= 3.24.52-2), libgudev-1.0-0 (= 238-7+b2), libharfbuzz-subset0 (= 12.3.2-2+b2), libharfbuzz0b (= 12.3.2-2+b2), libhdf5-320 (= 2.2.0+repack-5), libhdf5-cpp-320 (= 2.2.0+repack-5), libhdf5-dev (= 2.2.0+repack-5), libhdf5-fortran-320 (= 2.2.0+repack-5), libhdf5-hl-320 (= 2.2.0+repack-5), libhdf5-hl-cpp-320 (= 2.2.0+repack-5), libhdf5-hl-fortran-320 (= 2.2.0+repack-5), libheif-plugin-dav1d (= 1.23.4-1+b1), libheif-plugin-libde265 (= 1.23.4-1+b1), libheif1 (= 1.23.4-1+b1), libhogweed6t64 (= 3.10.2-1+b1), libhsa-runtime64-1 (= 6.4.3+dfsg-5), libhwasan0 (= 16.2.0-3), libhwloc-plugins (= 2.15.0-2), libhwloc15 (= 2.15.0-2), libhwy1t64 (= 1.3.0-5.1), libibmad5 (= 65.0-1.1), libibumad3 (= 65.0-1.1), libibverbs1 (= 65.0-1.1), libice6 (= 2:1.1.1-1+b2), libicu78 (= 78.3-2), libidn2-0 (= 2.3.8-5), libidn2-dev (= 2.3.8-5), libimagequant0 (= 4.4.1-1+b2), libinput-bin (= 1.31.3-1), libinput10 (= 1.31.3-1), libisl23 (= 0.28-1), libitm1 (= 16.2.0-3), libjansson4 (= 2.15.1-1), libjbig-dev (= 2.1-6.1+b3), libjbig0 (= 2.1-6.1+b3), libjpeg-dev (= 1:3.1.3-4), libjpeg62-turbo (= 1:3.1.3-4), libjpeg62-turbo-dev (= 1:3.1.3-4), libjq1 (= 1.8.2-1), libjs-jquery (= 3.7.1+dfsg+~3.5.33-1), libjs-sphinxdoc (= 9.1.0-9), libjxl0.11 (= 0.11.2-5.1), libk5crypto3 (= 1.22.1-3), libkadm5clnt-mit12 (= 1.22.1-3), libkadm5srv-mit12 (= 1.22.1-3), libkdb5-10t64 (= 1.22.1-3), libkeyutils1 (= 1.6.3-6+b2), libkrb5-3 (= 1.22.1-3), libkrb5-dev (= 1.22.1-3), libkrb5support0 (= 1.22.1-3), liblapack3 (= 3.12.1-8), liblcms2-2 (= 2.19.1-1), libldap-dev (= 2.6.14+dfsg-2), libldap2 (= 2.6.14+dfsg-2), liblerc-dev (= 4.2.0+ds-1), liblerc4 (= 4.2.0+ds-1), libllvm21 (= 1:21.1.8-13), libllvm22 (= 1:22.1.8-1+b2), liblsan0 (= 16.2.0-3), liblz4-1 (= 1.10.0-10), liblz4-dev (= 1.10.0-10), liblzf1 (= 3.6-4+b4), liblzma-dev (= 5.8.4-1), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.3.0-1), libmd4c0 (= 0.5.3-1), libmmdb2-0 (= 2.0.22-1+b3), libmmdb2-dev (= 2.0.22-1+b3), libmount1 (= 2.42.4-1), libmp3lame0 (= 4.0-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libmpg123-0t64 (= 1.33.7-1), libmtdev1t64 (= 1.1.7-1+b2), libncursesw6 (= 6.6+20260608-2), libnetcdf22 (= 1:4.10.1-1+b1), libnettle8t64 (= 3.10.2-1+b1), libnghttp2-14 (= 1.70.0-1), libnghttp2-dev (= 1.70.0-1), libnghttp3-9 (= 1.17.0-1), libnghttp3-dev (= 1.17.0-1), libngtcp2-16 (= 1.24.0-1), libngtcp2-crypto-gnutls8 (= 1.24.0-1), libngtcp2-crypto-ossl-dev (= 1.24.0-1), libngtcp2-crypto-ossl0 (= 1.24.0-1), libngtcp2-dev (= 1.24.0-1), libnl-3-200 (= 3.12.0-2+b1), libnl-route-3-200 (= 3.12.0-2+b1), libnotify4 (= 0.8.8-1+b1), libnuma1 (= 2.0.19-1+b2), libogg0 (= 1.3.6-2+b1), libonig5 (= 6.9.10-1+b1), libopengl-dev (= 1.7.0-3+b1), libopengl0 (= 1.7.0-3+b1), libopenjp2-7 (= 2.5.4-1.1), libopenmpi40 (= 6.0.0~rc2-2), libopus0 (= 1.6.1-1+b1), libp11-kit-dev (= 0.26.5-1), libp11-kit0 (= 0.26.5-1), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam-systemd (= 262-1), libpam0g (= 1.7.0-8), libpango-1.0-0 (= 1.58.2-1), libpangocairo-1.0-0 (= 1.58.2-1), libpangoft2-1.0-0 (= 1.58.2-1), libpciaccess0 (= 0.19-2), libpcre2-16-0 (= 10.48-3.1), libpcre2-32-0 (= 10.48-3.1), libpcre2-8-0 (= 10.48-3.1), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libpixman-1-0 (= 0.46.4-1+b2), libpkgconf7 (= 2.5.1-4), libpmix2t64 (= 7.0.0~rc1-2), libpng16-16t64 (= 1.6.59-1), libpopt0 (= 1.19+dfsg-2+b2), libproc2-1 (= 2:4.0.7-1), libpsl-dev (= 0.23.3-1), libpsl5t64 (= 0.23.3-1), libpsm2-2 (= 11.2.185-2.1), libpulse0 (= 17.0+dfsg1-3), libpython3-all-dev (= 3.14.7-3), libpython3-dev (= 3.14.7-3), libpython3-stdlib (= 3.14.7-3), libpython3.14 (= 3.14.8-1), libpython3.14-dev (= 3.14.8-1), libpython3.14-minimal (= 3.14.8-1), libpython3.14-stdlib (= 3.14.8-1), libqhull-r8.0 (= 2020.2-9), libqt5core5t64 (= 5.15.19+dfsg-5), libqt5dbus5t64 (= 5.15.19+dfsg-5), libqt5designer5 (= 5.15.19-2), libqt5gui5t64 (= 5.15.19+dfsg-5), libqt5help5 (= 5.15.19-2), libqt5network5t64 (= 5.15.19+dfsg-5), libqt5opengl5t64 (= 5.15.19+dfsg-5), libqt5printsupport5t64 (= 5.15.19+dfsg-5), libqt5sql5t64 (= 5.15.19+dfsg-5), libqt5test5t64 (= 5.15.19+dfsg-5), libqt5widgets5t64 (= 5.15.19+dfsg-5), libqt5xml5t64 (= 5.15.19+dfsg-5), libquadmath0 (= 16.2.0-3), libraqm0 (= 0.10.5-1), librav1e0.8 (= 0.8.1-12), librdmacm1t64 (= 65.0-1.1), libreadline8t64 (= 8.3-4), librsvg2-2 (= 2.63.2+dfsg-1), librtmp-dev (= 2.6-1), librtmp1 (= 2.6-1), libsasl2-2 (= 2.1.28+dfsg1-11), libsasl2-modules-db (= 2.1.28+dfsg1-11), libsdl2-2.0-0 (= 2.32.74+ds-1), libsdl3-0 (= 3.4.18+ds-1), libseccomp2 (= 2.6.1-1+b1), libselinux1 (= 3.11-2.1), libsensors-config (= 1:3.6.2-2), libsensors5 (= 1:3.6.2-2+b2), libsframe3 (= 2.47-6), libsharpyuv-dev (= 1.6.0-0.1), libsharpyuv0 (= 1.6.0-0.1), libsm6 (= 2:1.2.6-1+b2), libsmartcols1 (= 2.42.4-1), libsndfile1 (= 1.2.2-4+b1), libsqlite3-0 (= 3.53.4-2), libssh2-1-dev (= 1.11.1-6), libssh2-1t64 (= 1.11.1-6), libssl-dev (= 3.6.5-1), libssl3t64 (= 3.6.5-1), libssm-dev (= 1.4.0-2+b4), libssm2 (= 1.4.0-2+b4), libstdc++-16-dev (= 16.2.0-3), libstdc++6 (= 16.2.0-3), libsvtav1enc4 (= 4.1.0+dfsg-1), libsystemd-shared (= 262-1), libsystemd0 (= 262-1), libsz2 (= 1.1.7-1), libtasn1-6 (= 4.21.0-2+b1), libtasn1-6-dev (= 4.21.0-2+b1), libtcl8.6 (= 8.6.18+dfsg-1), libthai-data (= 0.1.30-3), libthai0 (= 0.1.30-3), libtiff-dev (= 4.7.2-1), libtiff6 (= 4.7.2-1), libtiffxx6 (= 4.7.2-1), libtinfo6 (= 6.6+20260608-2), libtk8.6 (= 8.6.18-1), libtool (= 2.6.2-3), libtsan2 (= 16.2.0-3), libubsan1 (= 16.2.0-3), libucc1 (= 1.9.0-1), libuchardet0 (= 0.0.8-2+b2), libucx0 (= 1.22.0-1), libudev1 (= 262-1), libunbound8 (= 1.26.1-1), libunistring-dev (= 1.4.2-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.4-1), libvorbis0a (= 1.3.7-3+b2), libvorbisenc2 (= 1.3.7-3+b2), libvulkan1 (= 1.4.363.0-1), libwacom-common (= 2.20.0-1), libwacom9 (= 2.20.0-1), libwayland-client0 (= 1.26.0-1), libwayland-cursor0 (= 1.26.0-1), libwayland-egl1 (= 1.26.0-1), libwebp-dev (= 1.6.0-0.1), libwebp7 (= 1.6.0-0.1), libwebpdecoder3 (= 1.6.0-0.1), libwebpdemux2 (= 1.6.0-0.1), libwebpmux3 (= 1.6.0-0.1), libwxbase3.2-1t64 (= 3.2.11+dfsg1-2), libwxgtk-gl3.2-1t64 (= 3.2.11+dfsg1-2), libwxgtk3.2-1t64 (= 3.2.11+dfsg1-2), libx11-6 (= 2:1.8.13-1), libx11-data (= 2:1.8.13-1), libx11-dev (= 2:1.8.13-1), libx11-xcb1 (= 2:1.8.13-1), libxau-dev (= 1:1.0.11-1+b2), libxau6 (= 1:1.0.11-1+b2), libxcb-dri3-0 (= 1.17.0-2+b2), libxcb-glx0 (= 1.17.0-2+b2), libxcb-icccm4 (= 0.4.2-1+b2), libxcb-image0 (= 0.4.0-2+b3), libxcb-keysyms1 (= 0.4.1-1+b2), libxcb-present0 (= 1.17.0-2+b2), libxcb-randr0 (= 1.17.0-2+b2), libxcb-render-util0 (= 0.3.10-1+b2), libxcb-render0 (= 1.17.0-2+b2), libxcb-shape0 (= 1.17.0-2+b2), libxcb-shm0 (= 1.17.0-2+b2), libxcb-sync1 (= 1.17.0-2+b2), libxcb-util1 (= 0.4.1-1+b2), libxcb-xfixes0 (= 1.17.0-2+b2), libxcb-xinerama0 (= 1.17.0-2+b2), libxcb-xinput0 (= 1.17.0-2+b2), libxcb-xkb1 (= 1.17.0-2+b2), libxcb1 (= 1.17.0-2+b2), libxcb1-dev (= 1.17.0-2+b2), libxcomposite1 (= 1:0.4.6-1+b2), libxcursor1 (= 1:1.2.3-1+b2), libxdamage1 (= 1:1.1.7-1+b1), libxdmcp-dev (= 1:1.1.5-2+b1), libxdmcp6 (= 1:1.1.5-2+b1), libxext6 (= 2:1.3.4-1+b4), libxfixes3 (= 1:6.0.0-2+b5), libxft2 (= 2.3.6-1+b5), libxi6 (= 2:1.8.3-1), libxinerama1 (= 2:1.1.4-3+b5), libxkbcommon-x11-0 (= 1.13.1-1), libxkbcommon0 (= 1.13.1-1), libxml2-16 (= 2.15.4+dfsg-1), libxnvctrl0 (= 535.171.04-1+b3), libxrandr2 (= 2:1.5.4-1+b4), libxrender1 (= 1:0.9.12-1+b2), libxres1 (= 2:1.2.1-2), libxshmfence1 (= 1.3.3-1+b2), libxslt1.1 (= 1.1.45-0.1), libxss1 (= 1:1.2.3-1+b4), libxtst6 (= 2:1.2.5-1+b2), libxxf86vm1 (= 1:1.1.4-2+b1), libxxhash-dev (= 0.8.3-2+b2), libxxhash0 (= 0.8.3-2+b2), libyaml-0-2 (= 0.2.5-2+b1), libyuv0 (= 0.0.1971.20260904-2), libz3-4 (= 4.13.3-1.1), libze1 (= 1.32.0-1), libzopfli1 (= 1.0.3-3), libzstd-dev (= 1.5.7+dfsg-4), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.2.9-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-2), media-types (= 14.0.0), mesa-libgallium (= 26.2.4-1), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), netbase (= 6.6), nettle-dev (= 3.10.2-1+b1), ocl-icd-libopencl1 (= 2.3.4-1+b1), openssl (= 3.6.5-1), openssl-provider-legacy (= 3.6.5-1), patch (= 2.8-2), pci.ids (= 0.0~2026.09.23-1), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), procps (= 2:4.0.7-1), pybind11-dev (= 3.1.0-2), pybuild-plugin-pyproject (= 7.20260623), pymol-data (= 3.1.0+dfsg-1), python-matplotlib-data (= 3.10.9+dfsg1-1), python3 (= 3.14.7-3), python3-all (= 3.14.7-3), python3-all-dev (= 3.14.7-3), python3-attr (= 26.1.0-1), python3-autocommand (= 2.2.2-4), python3-biopython (= 1.88+dfsg-2+b1), python3-brotli (= 1.2.0-4+b1), python3-build (= 1.5.1-1), python3-cairo (= 1.29.1-1), python3-certifi (= 2026.7.22+ds-1), python3-chardet (= 5.2.0+dfsg-2), python3-charset-normalizer (= 3.4.7-2+b1), python3-contourpy (= 1.3.3-2+b1), python3-cycler (= 0.12.1-3), python3-dateutil (= 2.9.0-5), python3-decorator (= 5.3.1-1), python3-dev (= 3.14.7-3), python3-editables (= 0.6-1), python3-flexcache (= 0.3-3), python3-flexparser (= 0.4-2), python3-fonttools (= 4.62.1-7+b1), python3-freetype (= 2.5.1-3), python3-h5py (= 3.16.0-7), python3-h5py-serial (= 3.16.0-7), python3-hatchling (= 1.30.1-2), python3-hdf5plugin (= 7.1.0-2), python3-idna (= 3.20-1), python3-iniconfig (= 2.1.0-2), python3-installer (= 1.0.1+dfsg1-3), python3-jaraco.context (= 6.0.1-2), python3-jaraco.functools (= 4.1.0-1), python3-kiwisolver (= 1.5.1-1), python3-legacy-cgi (= 2.6.4-3), python3-lxml (= 6.1.3-1), python3-lz4 (= 4.4.5+dfsg-1+b1), python3-matplotlib (= 3.10.9+dfsg1-1+b1), python3-minimal (= 3.14.7-3), python3-more-itertools (= 11.1.0-3), python3-mpmath (= 1.4.1-4), python3-mrcfile (= 1.5.4-4), python3-msgpack (= 1.2.1-1), python3-natsort (= 8.4.0-2), python3-numpy (= 1:2.4.6+ds-5), python3-numpy-dev (= 1:2.4.6+ds-5), python3-nxmx (= 0.0.7-1), python3-opengl (= 3.1.10+dfsg-1), python3-ordered-set (= 4.1.0-1), python3-packaging (= 26.2-3), python3-pathspec (= 1.1.1-3), python3-pil (= 12.3.0-1+b1), python3-pil.imagetk (= 12.3.0-1+b1), python3-pint (= 0.26.1-1), python3-pip (= 26.1.2+dfsg-1), python3-platformdirs (= 4.11.9-1), python3-pluggy (= 1.6.0-2), python3-procrunner (= 2.3.3-2), python3-psutil (= 7.2.2-1), python3-pycbf (= 0.9.7+dfsg1-5.1+b3), python3-pygments (= 2.20.0+dfsg-2), python3-pymol (= 3.1.0+dfsg-1+b4), python3-pyparsing (= 3.3.3-1), python3-pyproject-hooks (= 1.3.3-1), python3-pyqt5 (= 5.15.11+dfsg-7), python3-pyqt5.qtopengl (= 5.15.11+dfsg-7), python3-pyqt5.sip (= 12.19.0-1+b1), python3-pytest (= 9.1.1-1), python3-reportlab (= 5.0.0-4), python3-requests (= 2.34.2-1), python3-rlpycairo (= 0.3.0-4), python3-scipy (= 1.17.1-5+b1), python3-setuptools (= 84.0.0-2), python3-six (= 1.17.0-3), python3-sympy (= 1.14.0-5), python3-tk (= 3.14.7-3), python3-tqdm (= 4.70.1-1), python3-trove-classifiers (= 2026.9.21.13-1), python3-typing-extensions (= 4.16.0-5), python3-ufolib2 (= 0.18.1+dfsg1-2), python3-uharfbuzz (= 0.53.3-1+b1), python3-urllib3 (= 2.8.0-2), python3-wheel (= 0.47.0-2), python3-wxgtk4.0 (= 4.2.5+dfsg-3), python3-yaml (= 6.0.3-1+b1), python3-zipp (= 3.23.0-2), python3-zopfli (= 0.4.3-2), python3.14 (= 3.14.8-1), python3.14-dev (= 3.14.8-1), python3.14-minimal (= 3.14.8-1), python3.14-tk (= 3.14.8-1), readline-common (= 8.3-4), rsync (= 3.5.1+ds1-1), scons (= 4.10.1+dfsg-2), sed (= 4.9-3), sensible-utils (= 0.0.26), sfftw-dev (= 2.1.5-8), sfftw2 (= 2.1.5-8), sgml-base (= 1.31+nmu1), shared-mime-info (= 2.4-5+b3), sphinx-rtd-theme-common (= 3.1.0+dfsg-4), systemd (= 262-1), systemd-sysv (= 262-1), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-6), tzdata (= 2026e-1), unicode-data (= 17.0.0-2), util-linux (= 2.42.4-1), w3c-sgml-lib (= 1.3-3), x11-common (= 1:7.7+26), x11proto-dev (= 2025.1-1), xfonts-encodings (= 1:1.0.4-2.2), xfonts-utils (= 1:7.7+7), xkb-data (= 2.48-1), xml-core (= 0.21), xorg-sgml-doctools (= 1:1.12.1-1), xtrans-dev (= 1.6.0-1), xz-utils (= 5.8.4-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1791228810" +------------------------------------------------------------------------------+ | Package contents Wed, 14 Oct 2026 11:15:40 +0000 | +------------------------------------------------------------------------------+ libcctbx-dev_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb -------------------------------------------------- new Debian package, version 2.0. size 1175508 bytes: control archive=23608 bytes. 2990 bytes, 55 lines control 64542 bytes, 837 lines md5sums Package: libcctbx-dev Source: cctbx (2026.9+ds2+~3.30.1+ds1-1) Version: 2026.9+ds2+~3.30.1+ds1-1+b1 Architecture: amd64 Maintainer: Debian Science Maintainers Installed-Size: 8694 Depends: libann-cctbx-dev, libboost-python-dev, libccp4-dev, libcctbx0 (= 2026.9+ds2+~3.30.1+ds1-1+b1) Section: libdevel Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox - headers Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide everything needed to link against the cctbx libraries. drwxr-xr-x root/root 0 2026-10-05 19:33 ./ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/annlib_adaptbx/ -rw-r--r-- root/root 2068 2026-10-05 19:33 ./usr/include/annlib_adaptbx/ann_adaptor.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/boost_adaptbx/ -rw-r--r-- root/root 933 2026-09-30 14:46 ./usr/include/boost_adaptbx/boost_range_python.hpp -rw-r--r-- root/root 930 2026-09-30 14:46 ./usr/include/boost_adaptbx/convertible.h -rw-r--r-- root/root 3412 2026-09-30 14:46 ./usr/include/boost_adaptbx/exporting.hpp -rw-r--r-- root/root 3770 2026-09-30 14:46 ./usr/include/boost_adaptbx/floating_point_exceptions.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/boost_adaptbx/graph/ -rw-r--r-- root/root 1588 2026-09-30 14:46 ./usr/include/boost_adaptbx/graph/graph_export_adaptor.hpp -rw-r--r-- root/root 2301 2026-09-30 14:46 ./usr/include/boost_adaptbx/graph/graph_type.hpp -rw-r--r-- root/root 9259 2026-09-30 14:46 ./usr/include/boost_adaptbx/graph/maximum_clique_greedy.hpp -rw-r--r-- root/root 13452 2026-09-30 14:46 ./usr/include/boost_adaptbx/graph/maximum_clique_rascal.hpp -rw-r--r-- root/root 7254 2026-09-30 14:46 ./usr/include/boost_adaptbx/graph/vertex_map.hpp -rw-r--r-- root/root 2046 2026-09-30 14:46 ./usr/include/boost_adaptbx/hash.h -rw-r--r-- root/root 1442 2026-09-30 14:46 ./usr/include/boost_adaptbx/iterator_range.h -rw-r--r-- root/root 2380 2026-09-30 14:46 ./usr/include/boost_adaptbx/optional_conversions.h -rw-r--r-- root/root 160 2026-09-30 14:46 ./usr/include/boost_adaptbx/precompiled.h -rw-r--r-- root/root 15836 2026-09-30 14:46 ./usr/include/boost_adaptbx/python_streambuf.h -rw-r--r-- root/root 2273 2026-09-30 14:46 ./usr/include/boost_adaptbx/std_pair_conversion.h -rw-r--r-- root/root 742 2026-09-30 14:46 ./usr/include/boost_adaptbx/std_pair_fwd.h -rw-r--r-- root/root 1177 2026-09-30 14:46 ./usr/include/boost_adaptbx/swig_arg.hpp drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/boost_adaptbx/tests/ -rw-r--r-- root/root 1847 2026-09-30 14:46 ./usr/include/boost_adaptbx/tests/tst_optional_copy.h -rw-r--r-- root/root 1499 2026-09-30 14:46 ./usr/include/boost_adaptbx/tuple_conversion.h -rw-r--r-- root/root 380 2026-10-05 19:33 ./usr/include/boost_adaptbx/type_id_eq.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/cbflib_adaptbx/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/cbflib_adaptbx/detectors/ -rw-r--r-- root/root 858 2026-09-30 14:46 ./usr/include/cbflib_adaptbx/detectors/basic.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/cbflib_adaptbx/detectors/boost_python/ -rw-r--r-- root/root 8255 2026-10-05 19:33 ./usr/include/cbflib_adaptbx/detectors/boost_python/cbf_binary_adaptor.h -rw-r--r-- root/root 1764 2026-09-30 14:46 ./usr/include/cbflib_adaptbx/detectors/boost_python/general_cbf_write.h -rw-r--r-- root/root 305 2026-09-30 14:46 ./usr/include/cbflib_adaptbx/detectors/buffer_based_service.h -rw-r--r-- root/root 6894 2026-10-05 19:33 ./usr/include/cbflib_adaptbx/detectors/cbf_adaptor.h -rw-r--r-- root/root 850 2026-10-05 19:33 ./usr/include/cbflib_adaptbx/detectors/cbf_byte_offset_optimized.h -rw-r--r-- root/root 2701 2026-10-05 19:33 ./usr/include/cbflib_adaptbx/detectors/mar_adaptor.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ -rw-r--r-- root/root 2043 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_ccplib_fem.hpp -rw-r--r-- root/root 3515 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_diskio_fem.hpp -rw-r--r-- root/root 2389 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_fftlib_fem.hpp -rw-r--r-- root/root 535 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_library_fem.hpp -rw-r--r-- root/root 1896 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_maplib_fem.hpp -rw-r--r-- root/root 8765 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_mtzlib_fem.hpp -rw-r--r-- root/root 892 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_other_fem.hpp -rw-r--r-- root/root 1656 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_parser_f.h -rw-r--r-- root/root 1398 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_parser_fem.hpp -rw-r--r-- root/root 4502 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_symlib_fem.hpp -rw-r--r-- root/root 17883 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/cmaplib_f.h -rw-r--r-- root/root 23922 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/cmtzlib_f.h -rw-r--r-- root/root 15631 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/csymlib_f.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/dev/ -rw-r--r-- root/root 703 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/dev/fftlib.hpp -rw-r--r-- root/root 611 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/library_f.h -rw-r--r-- root/root 345 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/printf_wrappers.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/cctbx/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/ -rw-r--r-- root/root 16795 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/adp_restraints.h -rw-r--r-- root/root 12123 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/adp_similarity.h -rw-r--r-- root/root 5376 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/aniso_restraints.h -rw-r--r-- root/root 2381 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/fixed_u_eq_adp.h -rw-r--r-- root/root 2117 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/isotropic_adp.h -rw-r--r-- root/root 6375 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/rigid_bond.h -rw-r--r-- root/root 8016 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/rigu.h -rw-r--r-- root/root 28407 2026-09-30 14:46 ./usr/include/cctbx/adptbx.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/adptbx/ -rw-r--r-- root/root 9714 2026-09-30 14:46 ./usr/include/cctbx/adptbx/hirshfeld.h -rw-r--r-- root/root 1779 2026-09-30 14:46 ./usr/include/cctbx/anharmonic.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/cctbx/boost_python/ -rw-r--r-- root/root 660 2026-10-05 19:33 ./usr/include/cctbx/boost_python/flex_fwd.h -rw-r--r-- root/root 5808 2026-09-30 14:46 ./usr/include/cctbx/coordinates.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/covariance/ -rw-r--r-- root/root 4603 2026-09-30 14:46 ./usr/include/cctbx/covariance/covariance.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/crystal/ -rw-r--r-- root/root 5512 2026-09-30 14:46 ./usr/include/cctbx/crystal/asu_clusters.h -rw-r--r-- root/root 12174 2026-09-30 14:46 ./usr/include/cctbx/crystal/close_packing.h -rw-r--r-- root/root 16580 2026-09-30 14:46 ./usr/include/cctbx/crystal/coordination_sequences.h -rw-r--r-- root/root 35515 2026-09-30 14:46 ./usr/include/cctbx/crystal/direct_space_asu.h -rw-r--r-- root/root 9145 2026-09-30 14:46 ./usr/include/cctbx/crystal/incremental_pairs.h -rw-r--r-- root/root 148 2026-09-30 14:46 ./usr/include/cctbx/crystal/namespace.h -rw-r--r-- root/root 11257 2026-09-30 14:46 ./usr/include/cctbx/crystal/neighbors_fast.h -rw-r--r-- root/root 6859 2026-09-30 14:46 ./usr/include/cctbx/crystal/neighbors_simple.h -rw-r--r-- root/root 30130 2026-09-30 14:46 ./usr/include/cctbx/crystal/pair_tables.h -rw-r--r-- root/root 12717 2026-09-30 14:46 ./usr/include/cctbx/crystal/site_cluster_analysis.h -rw-r--r-- root/root 1385 2026-09-30 14:46 ./usr/include/cctbx/crystal/symmetry.h -rw-r--r-- root/root 736 2026-09-30 14:46 ./usr/include/cctbx/crystal/workarounds_bpl.h -rw-r--r-- root/root 6031 2026-09-30 14:46 ./usr/include/cctbx/crystal_orientation.h -rw-r--r-- root/root 2857 2026-09-30 14:46 ./usr/include/cctbx/cumulative_intensity_distribution.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/dmtbx/ -rw-r--r-- root/root 15584 2026-09-30 14:46 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14:46 ./usr/include/cctbx/eltbx/sasaki.h -rw-r--r-- root/root 2165 2026-09-30 14:46 ./usr/include/cctbx/eltbx/tiny_pse.h -rw-r--r-- root/root 2151 2026-09-30 14:46 ./usr/include/cctbx/eltbx/wavelengths.h -rw-r--r-- root/root 11495 2026-09-30 14:46 ./usr/include/cctbx/eltbx/xray_scattering.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/eltbx/xray_scattering/ -rw-r--r-- root/root 2284 2026-09-30 14:46 ./usr/include/cctbx/eltbx/xray_scattering/form_factor.h -rw-r--r-- root/root 1664 2026-09-30 14:46 ./usr/include/cctbx/eltbx/xray_scattering/gaussian.h -rw-r--r-- root/root 1724 2026-09-30 14:46 ./usr/include/cctbx/eltbx/xray_scattering/n_gaussian.h -rw-r--r-- root/root 579 2026-09-30 14:46 ./usr/include/cctbx/eltbx/xray_scattering/n_gaussian_raw.h -rw-r--r-- root/root 2301 2026-09-30 14:46 ./usr/include/cctbx/error.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/examples/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/examples/merging/ -rw-r--r-- 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root/root 3535 2026-09-30 14:46 ./usr/include/cctbx/maptbx/histogram.h -rw-r--r-- root/root 23419 2026-09-30 14:46 ./usr/include/cctbx/maptbx/interpolation.h -rw-r--r-- root/root 8408 2026-09-30 14:46 ./usr/include/cctbx/maptbx/loft.h -rw-r--r-- root/root 11439 2026-09-30 14:46 ./usr/include/cctbx/maptbx/map_accumulator.h -rw-r--r-- root/root 1472 2026-09-30 14:46 ./usr/include/cctbx/maptbx/marked_grid_points.h -rw-r--r-- root/root 2485 2026-09-30 14:46 ./usr/include/cctbx/maptbx/mask.h -rw-r--r-- root/root 4847 2026-09-30 14:46 ./usr/include/cctbx/maptbx/mask_utils.h -rw-r--r-- root/root 205 2026-09-30 14:46 ./usr/include/cctbx/maptbx/namespace.h -rw-r--r-- root/root 14329 2026-09-30 14:46 ./usr/include/cctbx/maptbx/peak_search.h -rw-r--r-- root/root 2058 2026-09-30 14:46 ./usr/include/cctbx/maptbx/resolution.h -rw-r--r-- root/root 2100 2026-09-30 14:46 ./usr/include/cctbx/maptbx/skeletons.h -rw-r--r-- root/root 3525 2026-09-30 14:46 ./usr/include/cctbx/maptbx/sphericity.h -rw-r--r-- root/root 2237 2026-09-30 14:46 ./usr/include/cctbx/maptbx/standard_deviations_around_sites.hpp -rw-r--r-- root/root 7885 2026-09-30 14:46 ./usr/include/cctbx/maptbx/statistics.h -rw-r--r-- root/root 15138 2026-09-30 14:46 ./usr/include/cctbx/maptbx/structure_factors.h -rw-r--r-- root/root 21027 2026-09-30 14:46 ./usr/include/cctbx/maptbx/target_and_gradients.h -rw-r--r-- root/root 46141 2026-09-30 14:46 ./usr/include/cctbx/maptbx/utils.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/masks/ -rw-r--r-- root/root 14960 2026-09-30 14:46 ./usr/include/cctbx/masks/around_atoms.h -rw-r--r-- root/root 6868 2026-09-30 14:46 ./usr/include/cctbx/masks/flood_fill.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/math/ -rw-r--r-- root/root 1087 2026-09-30 14:46 ./usr/include/cctbx/math/array_utils.h -rw-r--r-- root/root 5836 2026-09-30 14:46 ./usr/include/cctbx/math/cos_sin_table.h -rw-r--r-- root/root 1439 2026-09-30 14:46 ./usr/include/cctbx/math/loop_n_from_m.h 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2026-09-30 14:46 ./usr/include/cctbx/miller/match.h -rw-r--r-- root/root 3514 2026-09-30 14:46 ./usr/include/cctbx/miller/match_bijvoet_mates.h -rw-r--r-- root/root 4089 2026-09-30 14:46 ./usr/include/cctbx/miller/match_indices.h -rw-r--r-- root/root 1351 2026-09-30 14:46 ./usr/include/cctbx/miller/match_multi_indices.h -rw-r--r-- root/root 1278 2026-09-30 14:46 ./usr/include/cctbx/miller/math.h -rw-r--r-- root/root 22970 2026-09-30 14:46 ./usr/include/cctbx/miller/merge_equivalents.h -rw-r--r-- root/root 8142 2026-09-30 14:46 ./usr/include/cctbx/miller/phase_integrator.h -rw-r--r-- root/root 2617 2026-09-30 14:46 ./usr/include/cctbx/miller/phase_transfer.h -rw-r--r-- root/root 1552 2026-09-30 14:46 ./usr/include/cctbx/miller/randomize_amplitude_and_phase.h -rw-r--r-- root/root 1216 2026-09-30 14:46 ./usr/include/cctbx/miller/slices.h -rw-r--r-- root/root 11625 2026-09-30 14:46 ./usr/include/cctbx/miller/sym_equiv.h -rw-r--r-- root/root 818 2026-09-30 14:46 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2026-09-30 14:46 ./usr/include/cctbx/sgtbx/miller_ops.h -rw-r--r-- root/root 1388 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/operator_from_axis_direction.h -rw-r--r-- root/root 2961 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/parse_string.h -rw-r--r-- root/root 5057 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/phase_info.h -rw-r--r-- root/root 3992 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/reciprocal_space_asu.h -rw-r--r-- root/root 3959 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/reciprocal_space_reference_asu.h -rw-r--r-- root/root 2553 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/reference_settings.h -rw-r--r-- root/root 11934 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/rot_mx.h -rw-r--r-- root/root 338 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/rot_mx_hash.h -rw-r--r-- root/root 1423 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/rot_mx_info.h -rw-r--r-- root/root 1180 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/rotation_matrices.h -rw-r--r-- root/root 684 2026-09-30 14:46 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root/root 10467 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/space_group_type.h -rw-r--r-- root/root 20819 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/sym_equiv_sites.h -rw-r--r-- root/root 13091 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/symbols.h -rw-r--r-- root/root 14006 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/sys_abs_equiv.h -rw-r--r-- root/root 16317 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/tensor_rank_2.h -rw-r--r-- root/root 7643 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/tensors.h -rw-r--r-- root/root 1629 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/tr_group.h -rw-r--r-- root/root 391 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/tr_group_hash.h -rw-r--r-- root/root 6560 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/tr_vec.h -rw-r--r-- root/root 370 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/tr_vec_hash.h -rw-r--r-- root/root 458 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/utils.h -rw-r--r-- root/root 10050 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/wyckoff.h drwxr-xr-x root/root 0 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14:46 ./usr/include/fem/zero.hpp drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/gltbx/ -rw-r--r-- root/root 1253 2026-09-30 14:46 ./usr/include/gltbx/error.h -rw-r--r-- root/root 2284 2026-09-30 14:46 ./usr/include/gltbx/error_utils.h -rw-r--r-- root/root 5200 2026-09-30 14:46 ./usr/include/gltbx/fonts_ucs.h -rw-r--r-- root/root 570164 2026-09-30 14:46 ./usr/include/gltbx/glext.h -rw-r--r-- root/root 574 2026-09-30 14:46 ./usr/include/gltbx/include_opengl.h -rw-r--r-- root/root 7498 2026-09-30 14:46 ./usr/include/gltbx/pointer_args_bpl.h -rw-r--r-- root/root 10009 2026-09-30 14:46 ./usr/include/gltbx/quadrics.h -rw-r--r-- root/root 655 2026-09-30 14:46 ./usr/include/gltbx/special_wrapper_support.h -rw-r--r-- root/root 317 2026-09-30 14:46 ./usr/include/gltbx/util.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/iotbx/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/iotbx/detectors/ -rw-r--r-- root/root 963 2026-09-30 14:46 ./usr/include/iotbx/detectors/bruker.h 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root/root 7848 2026-09-30 14:46 ./usr/include/mmtbx/probe/SpatialQuery.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/mmtbx/reduce/ -rw-r--r-- root/root 4600 2026-09-30 14:46 ./usr/include/mmtbx/reduce/InteractionGraph.h -rw-r--r-- root/root 16833 2026-09-30 14:46 ./usr/include/mmtbx/reduce/Optimizers.h -rw-r--r-- root/root 5240 2026-09-30 14:46 ./usr/include/mmtbx/reduce/PositionReturn.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/mmtbx/rotamer/ -rw-r--r-- root/root 10098 2026-09-30 14:46 ./usr/include/mmtbx/rotamer/fit.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/mmtbx/rsr/ -rw-r--r-- root/root 13285 2026-09-30 14:46 ./usr/include/mmtbx/rsr/rsr.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/mmtbx/scaling/ -rw-r--r-- root/root 29126 2026-09-30 14:46 ./usr/include/mmtbx/scaling/absolute_scaling.h -rw-r--r-- root/root 25744 2026-09-30 14:46 ./usr/include/mmtbx/scaling/outlier.h -rw-r--r-- root/root 57302 2026-09-30 14:46 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3883 2026-09-30 14:46 ./usr/include/scitbx/math/utils.h -rw-r--r-- root/root 6517 2026-09-30 14:46 ./usr/include/scitbx/math/weighted_covariance.h -rw-r--r-- root/root 56695 2026-09-30 14:46 ./usr/include/scitbx/math/zernike.h -rw-r--r-- root/root 26688 2026-09-30 14:46 ./usr/include/scitbx/math/zernike_moments.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/scitbx/matrix/ -rw-r--r-- root/root 2132 2026-09-30 14:46 ./usr/include/scitbx/matrix/as_xyz.h -rw-r--r-- root/root 13164 2026-09-30 14:46 ./usr/include/scitbx/matrix/cholesky.h -rw-r--r-- root/root 291 2026-09-30 14:46 ./usr/include/scitbx/matrix/delta_tensors.h -rw-r--r-- root/root 905 2026-09-30 14:46 ./usr/include/scitbx/matrix/diagonal.h -rw-r--r-- root/root 11882 2026-09-30 14:46 ./usr/include/scitbx/matrix/eigensystem.h -rw-r--r-- root/root 7887 2026-09-30 14:46 ./usr/include/scitbx/matrix/givens.h -rw-r--r-- root/root 26266 2026-09-30 14:46 ./usr/include/scitbx/matrix/householder.h -rw-r--r-- root/root 3075 2026-09-30 14:46 ./usr/include/scitbx/matrix/inversion.h -rw-r--r-- root/root 3042 2026-09-30 14:46 ./usr/include/scitbx/matrix/lu_decomposition.h -rw-r--r-- root/root 4031 2026-09-30 14:46 ./usr/include/scitbx/matrix/matrix_vector_operations.h -rw-r--r-- root/root 7602 2026-09-30 14:46 ./usr/include/scitbx/matrix/move.h -rw-r--r-- root/root 5386 2026-09-30 14:46 ./usr/include/scitbx/matrix/multiply.h -rw-r--r-- root/root 1495 2026-09-30 14:46 ./usr/include/scitbx/matrix/norms.h -rw-r--r-- root/root 1801 2026-09-30 14:46 ./usr/include/scitbx/matrix/outer_product.h -rw-r--r-- root/root 9823 2026-09-30 14:46 ./usr/include/scitbx/matrix/packed.h -rw-r--r-- root/root 5862 2026-09-30 14:46 ./usr/include/scitbx/matrix/row_echelon.h -rw-r--r-- root/root 3188 2026-09-30 14:46 ./usr/include/scitbx/matrix/row_echelon_full_pivoting.h -rw-r--r-- root/root 4793 2026-09-30 14:46 ./usr/include/scitbx/matrix/row_echelon_full_pivoting_impl.h -rw-r--r-- root/root 1873 2026-09-30 14:46 ./usr/include/scitbx/matrix/row_echelon_full_pivoting_small.h -rw-r--r-- root/root 2316 2026-09-30 14:46 ./usr/include/scitbx/matrix/special_matrices.h -rw-r--r-- root/root 25064 2026-09-30 14:46 ./usr/include/scitbx/matrix/svd.h -rw-r--r-- root/root 4024 2026-09-30 14:46 ./usr/include/scitbx/matrix/symmetric_rank_1_update.h -rw-r--r-- root/root 5006 2026-09-30 14:46 ./usr/include/scitbx/matrix/tensor_rank_2.h -rw-r--r-- root/root 14705 2026-09-30 14:46 ./usr/include/scitbx/matrix/tensors.h -rw-r--r-- root/root 3577 2026-09-30 14:46 ./usr/include/scitbx/matrix/tests.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/matrix/tests/ -rw-r--r-- root/root 1477 2026-09-30 14:46 ./usr/include/scitbx/matrix/tests/utils.h -rw-r--r-- root/root 1465 2026-09-30 14:46 ./usr/include/scitbx/matrix/transpose_multiply.h -rw-r--r-- root/root 3603 2026-09-30 14:46 ./usr/include/scitbx/matrix/triangular_systems.h -rw-r--r-- root/root 583 2026-09-30 14:46 ./usr/include/scitbx/matrix/vector_operations.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/minpack/ -rw-r--r-- root/root 4322 2026-09-30 14:46 ./usr/include/scitbx/minpack/levenberg_marquardt.h -rw-r--r-- root/root 18187 2026-09-30 14:46 ./usr/include/scitbx/minpack/raw.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/misc/ -rw-r--r-- root/root 2968 2026-09-30 14:46 ./usr/include/scitbx/misc/file_utils.h -rw-r--r-- root/root 800 2026-09-30 14:46 ./usr/include/scitbx/misc/positive_getitem_index.h -rw-r--r-- root/root 2141 2026-09-30 14:46 ./usr/include/scitbx/misc/split_lines.h -rw-r--r-- root/root 1872 2026-09-30 14:46 ./usr/include/scitbx/numerical.h -rw-r--r-- root/root 1489 2026-09-30 14:46 ./usr/include/scitbx/r3_utils.hpp -rw-r--r-- root/root 9496 2026-09-30 14:46 ./usr/include/scitbx/random.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/random/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/random/boost_python/ -rw-r--r-- root/root 2634 2026-09-30 14:46 ./usr/include/scitbx/random/boost_python/random.h -rw-r--r-- root/root 5526 2026-09-30 14:46 ./usr/include/scitbx/random/mersenne_twister.h -rw-r--r-- root/root 1156 2026-09-30 14:46 ./usr/include/scitbx/random/variate_generator.h -rw-r--r-- root/root 7661 2026-09-30 14:46 ./usr/include/scitbx/random_legacy_boost_1_63.h -rw-r--r-- root/root 1788 2026-09-30 14:46 ./usr/include/scitbx/rational.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/ -rw-r--r-- root/root 1900 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/array_packing.h -rw-r--r-- root/root 8601 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/body_lib.h -rw-r--r-- root/root 827 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/body_t.h -rw-r--r-- root/root 31206 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/featherstone.h -rw-r--r-- root/root 18908 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/joint_lib.h -rw-r--r-- root/root 2288 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/joint_t.h -rw-r--r-- root/root 4430 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/matrix_helpers.h -rw-r--r-- root/root 179 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/namespace.h -rw-r--r-- root/root 4748 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/spatial_lib.h -rw-r--r-- root/root 13152 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/tardy.h -rw-r--r-- root/root 683 2026-09-30 14:46 ./usr/include/scitbx/rotr3.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/serialization/ -rw-r--r-- root/root 10056 2026-09-30 14:46 ./usr/include/scitbx/serialization/base_256.h -rw-r--r-- root/root 4719 2026-09-30 14:46 ./usr/include/scitbx/serialization/double_buffered.h -rw-r--r-- root/root 5427 2026-09-30 14:46 ./usr/include/scitbx/serialization/single_buffered.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/slatec/ -rw-r--r-- root/root 370 2026-09-30 14:46 ./usr/include/scitbx/slatec/lib_c.h -rw-r--r-- root/root 1354 2026-09-30 14:46 ./usr/include/scitbx/slatec/lib_cpp.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/sparse/ -rw-r--r-- root/root 1653 2026-09-30 14:46 ./usr/include/scitbx/sparse/approx_equal.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/sparse/boost_python/ -rw-r--r-- root/root 1063 2026-09-30 14:46 ./usr/include/scitbx/sparse/boost_python/vector.h -rw-r--r-- root/root 3021 2026-09-30 14:46 ./usr/include/scitbx/sparse/dfs.h -rw-r--r-- root/root 4091 2026-09-30 14:46 ./usr/include/scitbx/sparse/io.h -rw-r--r-- root/root 10007 2026-09-30 14:46 ./usr/include/scitbx/sparse/lu_factorization.h -rw-r--r-- root/root 17865 2026-09-30 14:46 ./usr/include/scitbx/sparse/matrix.h -rw-r--r-- root/root 2122 2026-09-30 14:46 ./usr/include/scitbx/sparse/operators.h -rw-r--r-- root/root 6837 2026-09-30 14:46 ./usr/include/scitbx/sparse/random.h -rw-r--r-- root/root 2541 2026-09-30 14:46 ./usr/include/scitbx/sparse/triangular.h -rw-r--r-- root/root 195 2026-09-30 14:46 ./usr/include/scitbx/sparse/util.h -rw-r--r-- root/root 22182 2026-09-30 14:46 ./usr/include/scitbx/sparse/vector.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/stl/ -rw-r--r-- root/root 1708 2026-09-30 14:46 ./usr/include/scitbx/stl/map_as_python_dict.h -rw-r--r-- root/root 283 2026-09-30 14:46 ./usr/include/scitbx/stl/map_fwd.h -rw-r--r-- root/root 8037 2026-09-30 14:46 ./usr/include/scitbx/stl/map_wrapper.h -rw-r--r-- root/root 2096 2026-09-30 14:46 ./usr/include/scitbx/stl/set_wrapper.h -rw-r--r-- root/root 1038 2026-09-30 14:46 ./usr/include/scitbx/stl/vector_as_python_list.h -rw-r--r-- root/root 306 2026-09-30 14:46 ./usr/include/scitbx/stl/vector_io.h -rw-r--r-- root/root 4019 2026-09-30 14:46 ./usr/include/scitbx/stl/vector_wrapper.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/boost_python/ -rw-r--r-- root/root 7204 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/boost_python/edge_exports.hpp -rw-r--r-- root/root 1305 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/boost_python/iterator_wrapper.hpp -rw-r--r-- root/root 248 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/boost_python/object_extensions.hpp -rw-r--r-- root/root 1600 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/boost_python/tree_exports.hpp -rw-r--r-- root/root 4163 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/builder.hpp -rw-r--r-- root/root 7108 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/edge.hpp -rw-r--r-- root/root 1008 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/exception.hpp -rw-r--r-- root/root 1599 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/glyph.hpp -rw-r--r-- root/root 3320 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/iterator.hpp -rw-r--r-- root/root 4096 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/matching_statistics.hpp -rw-r--r-- root/root 3423 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/tree.hpp -rw-r--r-- root/root 1432 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/word.hpp -rw-r--r-- root/root 18201 2026-09-30 14:46 ./usr/include/scitbx/sym_mat2.h -rw-r--r-- root/root 22179 2026-09-30 14:46 ./usr/include/scitbx/sym_mat3.h -rw-r--r-- root/root 197 2026-09-30 14:46 ./usr/include/scitbx/type_holder.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/util/ -rw-r--r-- root/root 847 2026-09-30 14:46 ./usr/include/scitbx/util/cpu_timer.h -rw-r--r-- root/root 12686 2026-09-30 14:46 ./usr/include/scitbx/vec2.h -rw-r--r-- root/root 16941 2026-09-30 14:46 ./usr/include/scitbx/vec3.h -rw-r--r-- root/root 10207 2026-09-30 14:46 ./usr/include/scitbx/weighted_histogram.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/wigner/ -rw-r--r-- root/root 5923 2026-09-30 14:46 ./usr/include/scitbx/wigner/wigner3j.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/smtbx/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/smtbx/ab_initio/ -rw-r--r-- root/root 1006 2026-09-30 14:46 ./usr/include/smtbx/ab_initio/density_modification.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/smtbx/boost_python/ -rw-r--r-- root/root 393 2026-10-05 19:33 ./usr/include/smtbx/boost_python/flex_fwd.h -rw-r--r-- root/root 2301 2026-09-30 14:46 ./usr/include/smtbx/error.h -rw-r--r-- root/root 476 2026-09-30 14:46 ./usr/include/smtbx/import_cctbx.h -rw-r--r-- root/root 152 2026-09-30 14:46 ./usr/include/smtbx/import_scitbx_af.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/smtbx/refinement/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/ -rw-r--r-- root/root 1732 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/affine.h -rw-r--r-- root/root 4433 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/direction.h -rw-r--r-- root/root 9783 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/geometrical_hydrogens.h -rw-r--r-- root/root 2539 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/occupancy.h -rw-r--r-- root/root 2394 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/proxy.h -rw-r--r-- root/root 31391 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/reparametrisation.h -rw-r--r-- root/root 3676 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/rigid.h -rw-r--r-- root/root 5965 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/same_group.h -rw-r--r-- root/root 1648 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/scaled_adp.h -rw-r--r-- root/root 3966 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/scatterer_parameters.h -rw-r--r-- root/root 3888 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/shared.h -rw-r--r-- root/root 4524 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/special_position.h -rw-r--r-- root/root 1137 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/symmetry_equivalent.h -rw-r--r-- root/root 1134 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/u_eq_dependent_u_iso.h -rw-r--r-- root/root 1015 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/u_iso_dependent_u_iso.h -rw-r--r-- root/root 148 2026-09-30 14:46 ./usr/include/smtbx/refinement/import_cctbx_xray.h -rw-r--r-- root/root 20577 2026-09-30 14:46 ./usr/include/smtbx/refinement/least_squares.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/smtbx/refinement/restraints/ -rw-r--r-- root/root 5055 2026-09-30 14:46 ./usr/include/smtbx/refinement/restraints/origin_fixing.h -rw-r--r-- root/root 2566 2026-09-30 14:46 ./usr/include/smtbx/refinement/weighting_schemes.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/smtbx/structure_factors/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/smtbx/structure_factors/direct/ -rw-r--r-- root/root 52104 2026-09-30 14:46 ./usr/include/smtbx/structure_factors/direct/standard_xray.h -rw-r--r-- root/root 16076 2026-09-30 14:46 ./usr/include/smtbx/structure_factors/direct/table_based.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/spotfinder/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/spotfinder/applications/ -rw-r--r-- root/root 2023 2026-09-30 14:46 ./usr/include/spotfinder/applications/find_active_area.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/boost_python/ -rw-r--r-- root/root 3218 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/boost_python/singlemask.h -rw-r--r-- root/root 4008 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/distl.h -rw-r--r-- root/root 2509 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/hough.h -rw-r--r-- root/root 15844 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/libdistl.h -rw-r--r-- root/root 5293 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/spot_shapes.h -rw-r--r-- root/root 276 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/spot_types.h -rw-r--r-- root/root 4454 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/spotfilter.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/spotfinder/dxtbx_toolbox/ -rw-r--r-- root/root 3504 2026-09-30 14:46 ./usr/include/spotfinder/dxtbx_toolbox/distl.h -rw-r--r-- root/root 837 2026-09-30 14:46 ./usr/include/spotfinder/dxtbx_toolbox/libdistl.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/tbxx/ -rw-r--r-- root/root 487 2026-09-30 14:46 ./usr/include/tbxx/alignment.h -rw-r--r-- root/root 1760 2026-09-30 14:46 ./usr/include/tbxx/error_utils.hpp -rw-r--r-- root/root 2811 2026-09-30 14:46 ./usr/include/tbxx/libc_backtrace.hpp -rw-r--r-- root/root 2857 2026-09-30 14:46 ./usr/include/tbxx/optional_copy.hpp -rw-r--r-- root/root 1493 2026-09-30 14:46 ./usr/include/tbxx/pretty_type_name.hpp -rw-r--r-- root/root 2124 2026-09-30 14:46 ./usr/include/tbxx/time_accu.hpp drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/xcif/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/xcif/include/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/xcif/include/xcif/ -rw-r--r-- root/root 6274 2026-09-30 14:46 ./usr/include/xcif/include/xcif/data_model.h -rw-r--r-- root/root 7555 2026-09-30 14:46 ./usr/include/xcif/include/xcif/mapped_file.h -rw-r--r-- root/root 1615 2026-09-30 14:46 ./usr/include/xcif/include/xcif/numeric.h -rw-r--r-- root/root 4012 2026-09-30 14:46 ./usr/include/xcif/include/xcif/string_view.h -rw-r--r-- root/root 3129 2026-09-30 14:46 ./usr/include/xcif/include/xcif/tokenizer.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/xcif/regression/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/xcif/regression/cpp/ -rw-r--r-- root/root 867 2026-09-30 14:46 ./usr/include/xcif/regression/cpp/test_utils.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/cctbx/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/cctbx/python3.14/ lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/cctbx/python3.14/include -> ../../../include/cctbx drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libann_adaptor.so -> libann_adaptor.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libasymmetric_map.so -> libasymmetric_map.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libcbf-private.so -> libcbf-private.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libccp4io.so -> libccp4io.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libcctbx.so -> libcctbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libcctbx_sgtbx_asu.so -> libcctbx_sgtbx_asu.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libdxtbxspotfinder.so -> libdxtbxspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libiotbx_mtz.so -> libiotbx_mtz.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libiotbx_pdb.so -> libiotbx_pdb.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libiotbx_xplor.so -> libiotbx_xplor.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libmmtbx_masks.so -> libmmtbx_masks.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libmmtbx_tls.so -> libmmtbx_tls.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libomptbx.so -> libomptbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/librstbx.so -> librstbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so -> libscitbx_boost_python.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libscitbx_minpack.so -> libscitbx_minpack.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libscitbx_slatec.so -> libscitbx_slatec.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libsmtbx_refinement_constraints.so -> libsmtbx_refinement_constraints.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libspotfinder.so -> libspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libxcif.so -> libxcif.so.0.0.1 drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/doc/libcctbx-dev/ -rw-r--r-- root/root 241 2026-10-05 19:33 ./usr/share/doc/libcctbx-dev/changelog.Debian.amd64.gz -rw-r--r-- root/root 2349 2026-10-05 19:33 ./usr/share/doc/libcctbx-dev/changelog.Debian.gz -rw-r--r-- root/root 5862 2026-09-30 14:46 ./usr/share/doc/libcctbx-dev/changelog.gz -rw-r--r-- root/root 38654 2026-03-07 14:36 ./usr/share/doc/libcctbx-dev/copyright libcctbx0-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb ------------------------------------------------------ new Debian package, version 2.0. size 9993244 bytes: control archive=1528 bytes. 1229 bytes, 12 lines control 2206 bytes, 21 lines md5sums Package: libcctbx0-dbgsym Source: cctbx (2026.9+ds2+~3.30.1+ds1-1) Version: 2026.9+ds2+~3.30.1+ds1-1+b1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Science Maintainers Installed-Size: 13901 Depends: libcctbx0 (= 2026.9+ds2+~3.30.1+ds1-1+b1) Section: debug Priority: optional Description: debug symbols for libcctbx0 Build-Ids: 0427bb9fe7f5912913e940b9f0d5ada75ac22b14 197b00481ddbb4efe5e5fe2cdf77a1e52dccb6ed 3e5d9e181c83b3a3c11efa83007b6ec827f432df 5a2940f7aabb49fc981948d41c483e728ddacd5e 5d11a940794d818b68cd21b609ebf7329c6ede4c 62d136275e8d74fa634aefdab92c17d22c32d6b2 650270c1c75f56d9b3612559d18fdaa577ae0d05 759344eb5ed628b27427f892088ea3a8042e65a6 7bd28910fe6b6e4508ee4f93a6281784bff532b3 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./usr/lib/debug/.build-id/d0/f08e22123f6fb0ffe3f73a3a544077d77d33ea.debug drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/debug/.build-id/e5/ -rw-r--r-- root/root 541376 2026-10-05 19:33 ./usr/lib/debug/.build-id/e5/cd0f1e2ba1d6fcf17500d9ab93448a11812e86.debug drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/debug/.build-id/f0/ -rw-r--r-- root/root 10048 2026-10-05 19:33 ./usr/lib/debug/.build-id/f0/81e913bb5700006e3ccde689c3d296ed71b86a.debug drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/debug/.build-id/f9/ -rw-r--r-- root/root 3206304 2026-10-05 19:33 ./usr/lib/debug/.build-id/f9/1a8c376ddd2f222ed9630476ade543ffa54ee9.debug drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 344960 2026-10-05 19:33 ./usr/lib/debug/.dwz/x86_64-linux-gnu/libcctbx0.debug drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/share/doc/libcctbx0-dbgsym -> libcctbx0 libcctbx0_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb ----------------------------------------------- new Debian package, version 2.0. size 2297424 bytes: control archive=2624 bytes. 3083 bytes, 55 lines control 1966 bytes, 24 lines md5sums 1105 bytes, 20 lines shlibs 65 bytes, 2 lines triggers Package: libcctbx0 Source: cctbx (2026.9+ds2+~3.30.1+ds1-1) Version: 2026.9+ds2+~3.30.1+ds1-1+b1 Architecture: amd64 Maintainer: Debian Science Maintainers Installed-Size: 11039 Depends: libann-cctbx0 (>= 1.1.2+doc), libboost-python1.92.0 (>= 1.92.0), libboost-python1.92.0-py314, libc6 (>= 2.38), libcbf1t64 (>= 0.9.7+dfsg1-2~), libccp4c0t64 (>= 8.0.0), libgcc-s1 (>= 4.0), libstdc++6 (>= 13.1) Section: libs Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox - runtime libraries Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide the cctbx runtime libraries. drwxr-xr-x root/root 0 2026-10-05 19:33 ./ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libann_adaptor.so.0 -> libann_adaptor.so.0.0.1 -rw-r--r-- root/root 69040 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libann_adaptor.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libasymmetric_map.so.0 -> libasymmetric_map.so.0.0.1 -rw-r--r-- root/root 473736 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libasymmetric_map.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libcbf-private.so.0 -> libcbf-private.so.0.0.1 -rw-r--r-- root/root 81616 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libcbf-private.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libccp4io.so.0 -> libccp4io.so.0.0.1 -rw-r--r-- root/root 14440 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libccp4io.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libcctbx.so.0 -> libcctbx.so.0.0.1 -rw-r--r-- root/root 2832824 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libcctbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libcctbx_sgtbx_asu.so.0 -> libcctbx_sgtbx_asu.so.0.0.1 -rw-r--r-- root/root 3705800 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libdxtbxspotfinder.so.0 -> libdxtbxspotfinder.so.0.0.1 -rw-r--r-- root/root 202480 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libdxtbxspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libiotbx_mtz.so.0 -> libiotbx_mtz.so.0.0.1 -rw-r--r-- root/root 298184 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libiotbx_mtz.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libiotbx_pdb.so.0 -> libiotbx_pdb.so.0.0.1 -rw-r--r-- root/root 1505880 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libiotbx_pdb.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libiotbx_xplor.so.0 -> libiotbx_xplor.so.0.0.1 -rw-r--r-- root/root 98480 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libiotbx_xplor.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libmmtbx_masks.so.0 -> libmmtbx_masks.so.0.0.1 -rw-r--r-- root/root 373560 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libmmtbx_masks.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libmmtbx_tls.so.0 -> libmmtbx_tls.so.0.0.1 -rw-r--r-- root/root 97944 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libmmtbx_tls.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libomptbx.so.0 -> libomptbx.so.0.0.1 -rw-r--r-- root/root 14560 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libomptbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/librstbx.so.0 -> librstbx.so.0.0.1 -rw-r--r-- root/root 164728 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/librstbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0 -> libscitbx_boost_python.so.0.0.1 -rw-r--r-- root/root 44008 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libscitbx_boost_python.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libscitbx_minpack.so.0 -> libscitbx_minpack.so.0.0.1 -rw-r--r-- root/root 39552 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libscitbx_minpack.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libscitbx_slatec.so.0 -> libscitbx_slatec.so.0.0.1 -rw-r--r-- root/root 18600 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libscitbx_slatec.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libsmtbx_refinement_constraints.so.0 -> libsmtbx_refinement_constraints.so.0.0.1 -rw-r--r-- root/root 634784 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libspotfinder.so.0 -> libspotfinder.so.0.0.1 -rw-r--r-- root/root 424032 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libxcif.so.0 -> libxcif.so.0.0.1 -rw-r--r-- root/root 119336 2026-10-05 19:33 ./usr/lib/x86_64-linux-gnu/libxcif.so.0.0.1 drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/doc/libcctbx0/ -rw-r--r-- root/root 241 2026-10-05 19:33 ./usr/share/doc/libcctbx0/changelog.Debian.amd64.gz -rw-r--r-- root/root 2348 2026-10-05 19:33 ./usr/share/doc/libcctbx0/changelog.Debian.gz -rw-r--r-- root/root 5862 2026-09-30 14:46 ./usr/share/doc/libcctbx0/changelog.gz -rw-r--r-- root/root 38654 2026-03-07 14:36 ./usr/share/doc/libcctbx0/copyright python3-cctbx-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb ---------------------------------------------------------- new Debian package, version 2.0. size 146318484 bytes: control archive=9268 bytes. 8704 bytes, 12 lines control 21502 bytes, 203 lines md5sums Package: python3-cctbx-dbgsym Source: cctbx (2026.9+ds2+~3.30.1+ds1-1) Version: 2026.9+ds2+~3.30.1+ds1-1+b1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Science Maintainers Installed-Size: 278041 Depends: python3-cctbx (= 2026.9+ds2+~3.30.1+ds1-1+b1) Section: debug Priority: optional Description: debug symbols for python3-cctbx Build-Ids: 0084ae219f033f9ffa7322c4d0ad70d6cb7c66b3 031e4545f4bdbeb64c65e5c4dd669fca4a099114 038817709b116c1d32ecdae6d797ff12551f3c36 086ad8b3a053b7a44447b43b352037457a1ae7cb 09f0d0237d68a52585558d576994e41e3616b217 0c8ebd52eb94a731d7101333fa11c1a66372dcc5 0f740ab5b85af31f844b86b64281f024a7bba2a8 1182ac56ad0ed99d346e23fc764492f2adb0f0d0 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./usr/lib/debug/.build-id/ff/841425e0e01ea86c2fd6d0be7ca46163ee1bd0.debug drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 4605800 2026-10-05 19:33 ./usr/lib/debug/.dwz/x86_64-linux-gnu/python3-cctbx.debug drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/share/doc/python3-cctbx-dbgsym -> python3-cctbx python3-cctbx_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb --------------------------------------------------- new Debian package, version 2.0. size 118597260 bytes: control archive=132348 bytes. 3865 bytes, 55 lines control 523738 bytes, 5345 lines md5sums 281 bytes, 12 lines * postinst #!/bin/sh 419 bytes, 12 lines * prerm #!/bin/sh Package: python3-cctbx Source: cctbx (2026.9+ds2+~3.30.1+ds1-1) Version: 2026.9+ds2+~3.30.1+ds1-1+b1 Architecture: amd64 Maintainer: Debian Science Maintainers Installed-Size: 369754 Depends: ca-certificates, libcctbx-dev (= 2026.9+ds2+~3.30.1+ds1-1+b1), libcctbx0 (= 2026.9+ds2+~3.30.1+ds1-1+b1), python3-legacy-cgi, python3-pycbf (>= 0.9.7+dfsg1-2~), tcsh | csh | c-shell, python3 (<< 3.15), python3 (>= 3.14~), python3-h5py (>= 3), python3-hdf5plugin, python3-matplotlib, python3-mrcfile, python3-natsort, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-nxmx, python3-ordered-set, python3-pil, python3-pint, python3-procrunner, python3-pymol, python3-requests, python3-scipy, python3-six, python3-tqdm, python3-wxgtk4.0, python3:any, libantlr3c-3.4-0 | libantlr3c-antlrdbg-3.4-0, libboost-numpy1.92.0 (>= 1.92.0), libboost-numpy1.92.0-py314, libboost-python1.92.0 (>= 1.92.0), libboost-python1.92.0-py314, libboost-thread1.92.0 (>= 1.92.0), libboost-timer1.92.0 (>= 1.92.0), libc6 (>= 2.43), libcbf1t64 (>= 0.9.7+dfsg1-2~), libccp4c0t64 (>= 8.0.0), libgcc-s1 (>= 4.0), libgl1, libglu1-mesa | libglu1, libhdf5-320 (>= 2.1.0), libstdc++6 (>= 14) Section: python Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Python Toolbox for crystallography Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide a selected collection of python modules from the cctbx project. drwxr-xr-x root/root 0 2026-10-05 19:33 ./ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/bin/ -rwxr-xr-x root/root 3202 2026-10-05 19:33 ./usr/bin/annlib.python -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/annlib.show_build_path -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/annlib.show_dist_paths -rwxr-xr-x root/root 3717 2026-10-05 19:33 ./usr/bin/boost.gcd -rwxr-xr-x root/root 3717 2026-10-05 19:33 ./usr/bin/boost.lcm -rwxr-xr-x root/root 3201 2026-10-05 19:33 ./usr/bin/boost.python -rwxr-xr-x root/root 3744 2026-10-05 19:33 ./usr/bin/boost.show_build_path -rwxr-xr-x root/root 3744 2026-10-05 19:33 ./usr/bin/boost.show_dist_paths -rwxr-xr-x root/root 3769 2026-10-05 19:33 ./usr/bin/boost_adaptbx.divide_by_zero -rwxr-xr-x root/root 3773 2026-10-05 19:33 ./usr/bin/boost_adaptbx.double_overflow -rwxr-xr-x root/root 3741 2026-10-05 19:33 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2026-10-05 19:33 ./usr/bin/iotbx.cif.as_miller_arrays -rwxr-xr-x root/root 3765 2026-10-05 19:33 ./usr/bin/iotbx.cif.as_xray_structure -rwxr-xr-x root/root 3729 2026-10-05 19:33 ./usr/bin/iotbx.cif.validate -rwxr-xr-x root/root 3721 2026-10-05 19:33 ./usr/bin/iotbx.cif_as_mtz -rwxr-xr-x root/root 3721 2026-10-05 19:33 ./usr/bin/iotbx.cif_as_pdb -rwxr-xr-x root/root 3765 2026-10-05 19:33 ./usr/bin/iotbx.cns.reflection_reader -rwxr-xr-x root/root 3737 2026-10-05 19:33 ./usr/bin/iotbx.cns.sdb_reader -rwxr-xr-x root/root 3797 2026-10-05 19:33 ./usr/bin/iotbx.cns.transfer_crystal_symmetry -rwxr-xr-x root/root 3781 2026-10-05 19:33 ./usr/bin/iotbx.crystal_symmetry_from_any -rwxr-xr-x root/root 3753 2026-10-05 19:33 ./usr/bin/iotbx.dano_as_amplitudes -rwxr-xr-x root/root 3769 2026-10-05 19:33 ./usr/bin/iotbx.distance_least_squares -rwxr-xr-x root/root 3729 2026-10-05 19:33 ./usr/bin/iotbx.dtrek.to_cns -rwxr-xr-x root/root 3697 2026-10-05 19:33 ./usr/bin/iotbx.emma -rwxr-xr-x root/root 3781 2026-10-05 19:33 ./usr/bin/iotbx.export_scalepack_unmerged -rwxr-xr-x root/root 3717 2026-10-05 19:33 ./usr/bin/iotbx.fetch_pdb -rwxr-xr-x root/root 3725 2026-10-05 19:33 ./usr/bin/iotbx.file_reader -rwxr-xr-x root/root 3733 2026-10-05 19:33 ./usr/bin/iotbx.french_wilson -rwxr-xr-x root/root 3757 2026-10-05 19:33 ./usr/bin/iotbx.get_pubmed_citation -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/iotbx.lattice_symmetry -rwxr-xr-x root/root 3753 2026-10-05 19:33 ./usr/bin/iotbx.merging_statistics -rwxr-xr-x root/root 3713 2026-10-05 19:33 ./usr/bin/iotbx.mtz.dump -rwxr-xr-x root/root 3765 2026-10-05 19:33 ./usr/bin/iotbx.pdb.add_conformations -rwxr-xr-x root/root 3765 2026-10-05 19:33 ./usr/bin/iotbx.pdb.as_xray_structure -rwxr-xr-x root/root 3773 2026-10-05 19:33 ./usr/bin/iotbx.pdb.box_around_molecule -rwxr-xr-x root/root 3789 2026-10-05 19:33 ./usr/bin/iotbx.pdb.flip_symmetric_amino_acids -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/iotbx.pdb.get_citation -rwxr-xr-x root/root 3777 2026-10-05 19:33 ./usr/bin/iotbx.pdb.insert_scale_records -rwxr-xr-x root/root 3773 2026-10-05 19:33 ./usr/bin/iotbx.pdb.join_fragment_files -rwxr-xr-x root/root 3829 2026-10-05 19:33 ./usr/bin/iotbx.pdb.link_as_geometry_restraints_edits -rwxr-xr-x root/root 3753 2026-10-05 19:33 ./usr/bin/iotbx.pdb.print_sequence -rwxr-xr-x root/root 3765 2026-10-05 19:33 ./usr/bin/iotbx.pdb.show_connectivity -rwxr-xr-x root/root 3725 2026-10-05 19:33 ./usr/bin/iotbx.pdb.sort_atoms -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/iotbx.pdb.split_models -rwxr-xr-x root/root 3789 2026-10-05 19:33 ./usr/bin/iotbx.pdb.superpose_atoms_by_name -rwxr-xr-x root/root 3797 2026-10-05 19:33 ./usr/bin/iotbx.pdb.superpose_centers_of_mass -rwxr-xr-x root/root 3729 2026-10-05 19:33 ./usr/bin/iotbx.pdb_as_fasta -rwxr-xr-x root/root 3765 2026-10-05 19:33 ./usr/bin/iotbx.pdb_labels_comparison -rwxr-xr-x root/root 3741 2026-10-05 19:33 ./usr/bin/iotbx.pdb_labels_diff -rwxr-xr-x root/root 3737 2026-10-05 19:33 ./usr/bin/iotbx.pdb_remediator -rwxr-xr-x root/root 3697 2026-10-05 19:33 ./usr/bin/iotbx.phil -rwxr-xr-x root/root 3777 2026-10-05 19:33 ./usr/bin/iotbx.poscar_as_xray_structure -rwxr-xr-x root/root 3201 2026-10-05 19:33 ./usr/bin/iotbx.python -rwxr-xr-x root/root 3781 2026-10-05 19:33 ./usr/bin/iotbx.r_free_flags_accumulation -rwxr-xr-x root/root 3757 2026-10-05 19:33 ./usr/bin/iotbx.r_free_flags_as_cns -rwxr-xr-x root/root 3801 2026-10-05 19:33 ./usr/bin/iotbx.r_free_flags_completion_simple -rwxr-xr-x root/root 3781 2026-10-05 19:33 ./usr/bin/iotbx.reflection_file_converter -rwxr-xr-x root/root 3769 2026-10-05 19:33 ./usr/bin/iotbx.reflection_file_editor -rwxr-xr-x root/root 3769 2026-10-05 19:33 ./usr/bin/iotbx.reflection_file_reader -rwxr-xr-x root/root 3729 2026-10-05 19:33 ./usr/bin/iotbx.shelx.as_cif -rwxr-xr-x root/root 3773 2026-10-05 19:33 ./usr/bin/iotbx.shelx.as_xray_structure -rwxr-xr-x root/root 3761 2026-10-05 19:33 ./usr/bin/iotbx.shelx.dump_as_python -rwxr-xr-x root/root 3744 2026-10-05 19:33 ./usr/bin/iotbx.show_build_path -rwxr-xr-x root/root 3744 2026-10-05 19:33 ./usr/bin/iotbx.show_dist_paths -rwxr-xr-x root/root 3737 2026-10-05 19:33 ./usr/bin/iotbx.show_distances -rwxr-xr-x root/root 3773 2026-10-05 19:33 ./usr/bin/iotbx.simple_map_coefficients -rwxr-xr-x root/root 3737 2026-10-05 19:33 ./usr/bin/iotbx.split_data_cif -rwxr-xr-x root/root 3741 2026-10-05 19:33 ./usr/bin/iotbx.symmetry_search -rwxr-xr-x root/root 3749 2026-10-05 19:33 ./usr/bin/iotbx.unique_with_biomt -rwxr-xr-x root/root 3769 2026-10-05 19:33 ./usr/bin/iotbx.xplor.map.show_summary -rwxr-xr-x root/root 3749 2026-10-05 19:33 ./usr/bin/labelit.png -rwxr-xr-x root/root 3773 2026-10-05 19:33 ./usr/bin/libtbx.add_docstrings_with_ai -rwxr-xr-x root/root 3769 2026-10-05 19:33 ./usr/bin/libtbx.analyse_code_comments -rwxr-xr-x root/root 3717 2026-10-05 19:33 ./usr/bin/libtbx.any2unix -rwxr-xr-x root/root 3753 2026-10-05 19:33 ./usr/bin/libtbx.assert_line_count 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19:33 ./usr/bin/libtbx.epydoc_run -rwxr-xr-x root/root 3653 2026-10-05 19:33 ./usr/bin/libtbx.exec -rwxr-xr-x root/root 3769 2026-10-05 19:33 ./usr/bin/libtbx.extract_code_from_txt -rwxr-xr-x root/root 3733 2026-10-05 19:33 ./usr/bin/libtbx.find_clutter -rwxr-xr-x root/root 3725 2026-10-05 19:33 ./usr/bin/libtbx.find_files -rwxr-xr-x root/root 3765 2026-10-05 19:33 ./usr/bin/libtbx.find_in_repositories -rwxr-xr-x root/root 3773 2026-10-05 19:33 ./usr/bin/libtbx.find_old_style_classes -rwxr-xr-x root/root 3777 2026-10-05 19:33 ./usr/bin/libtbx.find_pdb_mmcif_problems -rwxr-xr-x root/root 3761 2026-10-05 19:33 ./usr/bin/libtbx.find_reserved_names -rwxr-xr-x root/root 3749 2026-10-05 19:33 ./usr/bin/libtbx.find_under_build -rwxr-xr-x root/root 3737 2026-10-05 19:33 ./usr/bin/libtbx.find_untested -rwxr-xr-x root/root 3761 2026-10-05 19:33 ./usr/bin/libtbx.find_unused_imports -rwxr-xr-x root/root 3785 2026-10-05 19:33 ./usr/bin/libtbx.find_unused_imports_crude -rwxr-xr-x root/root 3649 2026-10-05 19:33 ./usr/bin/libtbx.gdb -rwxr-xr-x root/root 3749 2026-10-05 19:33 ./usr/bin/libtbx.git_avoid_merges -rwxr-xr-x root/root 3701 2026-10-05 19:33 ./usr/bin/libtbx.help -rwxr-xr-x root/root 3741 2026-10-05 19:33 ./usr/bin/libtbx.import_all_ext -rwxr-xr-x root/root 3753 2026-10-05 19:33 ./usr/bin/libtbx.import_all_python -rwxr-xr-x root/root 3713 2026-10-05 19:33 ./usr/bin/libtbx.install -rwxr-xr-x root/root 3737 2026-10-05 19:33 ./usr/bin/libtbx.install_conda -rwxr-xr-x root/root 3657 2026-10-05 19:33 ./usr/bin/libtbx.latex -rwxr-xr-x root/root 3725 2026-10-05 19:33 ./usr/bin/libtbx.line_count -rwxr-xr-x root/root 3725 2026-10-05 19:33 ./usr/bin/libtbx.list_files -rwxr-xr-x root/root 3733 2026-10-05 19:33 ./usr/bin/libtbx.list_modules -rwxr-xr-x root/root 3813 2026-10-05 19:33 ./usr/bin/libtbx.list_source_files_sorted_by_size -rwxr-xr-x root/root 3721 2026-10-05 19:33 ./usr/bin/libtbx.make_dist -rwxr-xr-x root/root 3749 2026-10-05 19:33 ./usr/bin/libtbx.make_sphinx_html -rwxr-xr-x root/root 3709 2026-10-05 19:33 ./usr/bin/libtbx.nequal -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/libtbx.parallel_simple -rwxr-xr-x root/root 3733 2026-10-05 19:33 ./usr/bin/libtbx.path_utility -rwxr-xr-x root/root 3669 2026-10-05 19:33 ./usr/bin/libtbx.pdflatex -rwxr-xr-x root/root 3701 2026-10-05 19:33 ./usr/bin/libtbx.phil -rwxr-xr-x root/root 3749 2026-10-05 19:33 ./usr/bin/libtbx.prime_factors_of -rwxr-xr-x root/root 3717 2026-10-05 19:33 ./usr/bin/libtbx.printenv -rwxr-xr-x root/root 3741 2026-10-05 19:33 ./usr/bin/libtbx.py_compile_all -rwxr-xr-x root/root 3202 2026-10-05 19:33 ./usr/bin/libtbx.python -rwxr-xr-x root/root 3793 2026-10-05 19:33 ./usr/bin/libtbx.raise_exception_for_testing -rwxr-xr-x root/root 3665 2026-10-05 19:33 ./usr/bin/libtbx.refresh -rwxr-xr-x root/root 3717 2026-10-05 19:33 ./usr/bin/libtbx.reindent -rwxr-xr-x root/root 3753 2026-10-05 19:33 ./usr/bin/libtbx.remote_processing -rwxr-xr-x root/root 3729 2026-10-05 19:33 ./usr/bin/libtbx.remove_tree -rwxr-xr-x root/root 3769 2026-10-05 19:33 ./usr/bin/libtbx.remove_unused_imports -rwxr-xr-x root/root 3769 2026-10-05 19:33 ./usr/bin/libtbx.resource_monitor_plot -rwxr-xr-x root/root 3765 2026-10-05 19:33 ./usr/bin/libtbx.run_pickled_function -rwxr-xr-x root/root 3757 2026-10-05 19:33 ./usr/bin/libtbx.run_tests_parallel -rwxr-xr-x root/root 3705 2026-10-05 19:33 ./usr/bin/libtbx.scons -rwxr-xr-x root/root 3777 2026-10-05 19:33 ./usr/bin/libtbx.seconds_since_the_epoch -rwxr-xr-x root/root 3761 2026-10-05 19:33 ./usr/bin/libtbx.sge_available_slots -rwxr-xr-x root/root 3749 2026-10-05 19:33 ./usr/bin/libtbx.sge_qstat_counts -rwxr-xr-x root/root 3645 2026-10-05 19:33 ./usr/bin/libtbx.sh -rwxr-xr-x root/root 3749 2026-10-05 19:33 ./usr/bin/libtbx.show_all_on_path -rwxr-xr-x root/root 3737 2026-10-05 19:33 ./usr/bin/libtbx.show_bin_path -rwxr-xr-x root/root 3757 2026-10-05 19:33 ./usr/bin/libtbx.show_build_options -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/libtbx.show_build_path -rwxr-xr-x root/root 3749 2026-10-05 19:33 ./usr/bin/libtbx.show_but_no_repr -rwxr-xr-x root/root 3737 2026-10-05 19:33 ./usr/bin/libtbx.show_commands -rwxr-xr-x root/root 3757 2026-10-05 19:33 ./usr/bin/libtbx.show_date_and_time -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/libtbx.show_dist_paths -rwxr-xr-x root/root 3717 2026-10-05 19:33 ./usr/bin/libtbx.show_env -rwxr-xr-x root/root 3757 2026-10-05 19:33 ./usr/bin/libtbx.show_environ_usage -rwxr-xr-x root/root 3773 2026-10-05 19:33 ./usr/bin/libtbx.show_full_command_path -rwxr-xr-x root/root 3757 2026-10-05 19:33 ./usr/bin/libtbx.show_host_and_user -rwxr-xr-x root/root 3757 2026-10-05 19:33 ./usr/bin/libtbx.show_include_paths -rwxr-xr-x root/root 3737 2026-10-05 19:33 ./usr/bin/libtbx.show_lib_path -rwxr-xr-x root/root 3781 2026-10-05 19:33 ./usr/bin/libtbx.show_module_dependencies -rwxr-xr-x root/root 3785 2026-10-05 19:33 ./usr/bin/libtbx.show_number_of_processors -rwxr-xr-x root/root 3765 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2026-10-05 19:33 ./usr/lib/python3/dist-packages/xcif_ext.cpython-314-x86_64-linux-gnu.so drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/doc/python3-cctbx/ -rw-r--r-- root/root 241 2026-10-05 19:33 ./usr/share/doc/python3-cctbx/changelog.Debian.amd64.gz -rw-r--r-- root/root 2347 2026-10-05 19:33 ./usr/share/doc/python3-cctbx/changelog.Debian.gz -rw-r--r-- root/root 5862 2026-09-30 14:46 ./usr/share/doc/python3-cctbx/changelog.gz -rw-r--r-- root/root 38654 2026-03-07 14:36 ./usr/share/doc/python3-cctbx/copyright drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/lintian/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 1 2026-03-07 14:36 ./usr/share/lintian/overrides/python3-cctbx +------------------------------------------------------------------------------+ | Post Build Wed, 14 Oct 2026 11:15:44 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Wed, 14 Oct 2026 11:15:44 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Wed, 14 Oct 2026 11:15:48 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 6796088 Build-Time: 1150 Distribution: unstable Host Architecture: amd64 Install-Time: 3 Job: /srv/rebuilderd/tmp/rebuilderd54aeCr/inputs/cctbx_2026.9+ds2+~3.30.1+ds1-1.dsc Machine Architecture: amd64 Package: cctbx Package-Time: 1168 Source-Version: 2026.9+ds2+~3.30.1+ds1-1 Space: 6796088 Status: successful Version: 2026.9+ds2+~3.30.1+ds1-1+b1 -------------------------------------------------------------------------------- Finished at 2026-10-14T11:15:39Z Build needed 00:19:28, 6796088k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderd54aeCr/out checking libcctbx-dev_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb: size... md5... sha256... sha1... all OK checking libcctbx0-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb: size... sha256... md5... sha1... all OK checking libcctbx0_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb: size... md5... sha256... sha1... all OK checking python3-cctbx-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb: size... sha256... md5... sha1... all OK checking python3-cctbx_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb: size differs for python3-cctbx_2026.9+ds2+~3.30.1+ds1-1+b1_amd64.deb