=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdkBZfY5/inputs/mrtrix3_3.0.8-4_amd64.buildinfo Source: mrtrix3 Version: 3.0.8-4 rebuilderd-worker node: osuosl44-amd64 +------------------------------------------------------------------------------+ | Downloading sources Sun, 25 Oct 2026 01:00:32 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.7 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [151 kB] Get:7 https://deb.debian.org/debian sid InRelease [193 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:10 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:11 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:12 https://deb.debian.org/debian-security trixie-security/main Sources [240 kB] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [820 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [148 kB] Get:15 https://deb.debian.org/debian trixie-backports/main Sources [333 kB] Get:16 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [3,436 B] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [7,896 B] Get:18 https://deb.debian.org/debian forky/main Sources [11.4 MB] Get:19 https://deb.debian.org/debian sid/main Sources [12.1 MB] Get:20 https://deb.debian.org/debian sid/non-free-firmware Sources [10.7 kB] Get:21 https://deb.debian.org/debian experimental/non-free-firmware Sources [2,568 B] Get:22 https://deb.debian.org/debian experimental/main Sources [362 kB] Fetched 35.9 MB in 33s (1,098 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/mrtrix3/mrtrix3_3.0.8-4.dsc' mrtrix3_3.0.8-4.dsc 1900 SHA256:d93a2196792d641de7d8a790360986bacf505fa33eb37c526fa4b747e3336ad1 'https://deb.debian.org/debian/pool/main/m/mrtrix3/mrtrix3_3.0.8.orig.tar.gz' mrtrix3_3.0.8.orig.tar.gz 4057854 SHA256:7ca0ec513fe32421f453b8bdc5a7355a4563fd0247eea92fd5998ebd81a988aa 'https://deb.debian.org/debian/pool/main/m/mrtrix3/mrtrix3_3.0.8-4.debian.tar.xz' mrtrix3_3.0.8-4.debian.tar.xz 12084 SHA256:a73f0cca1736f33588e7f51d46ee8fc3cc4b3651afffc06f711167e4d66c6c87 7ca0ec513fe32421f453b8bdc5a7355a4563fd0247eea92fd5998ebd81a988aa mrtrix3_3.0.8.orig.tar.gz a73f0cca1736f33588e7f51d46ee8fc3cc4b3651afffc06f711167e4d66c6c87 mrtrix3_3.0.8-4.debian.tar.xz d93a2196792d641de7d8a790360986bacf505fa33eb37c526fa4b747e3336ad1 mrtrix3_3.0.8-4.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Sun, 25 Oct 2026 01:01:05 +0000 | +------------------------------------------------------------------------------+ Rebuilding mrtrix3=3.0.8-4 in /srv/rebuilderd/tmp/rebuilderdkBZfY5/inputs now. + /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdkBZfY5/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdkBZfY5/inputs/mrtrix3_3.0.8-4_amd64.buildinfo /srv/rebuilderd/tmp/rebuilderdkBZfY5/inputs/mrtrix3_3.0.8-4_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/mrtrix3-3.0.8 I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [193 kB] Get:2 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable InRelease [193 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 Packages [10.8 MB] Get:4 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 Packages [10.8 MB] Fetched 22.0 MB in 2s (9538 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20261023T023732Z/dists/unstable/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main amd64 libacl1 amd64 2.4.0-1 [37.1 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 libasound2-data all 1.2.16.1-2 [19.4 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libasound2t64 amd64 1.2.16.1-2 [417 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libarpack2t64 amd64 3.9.1-6+b2 [105 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libattr1 amd64 1:2.6.0-1 [24.7 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libaudit-common all 1:4.2.1-1 [13.3 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libaudit1 amd64 1:4.2.1-1 [59.6 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.19-3 [892 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-18 [49.2 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-18 [113 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-18 [45.2 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 base-files amd64 14.2 [88.0 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 base-passwd amd64 3.6.8 [54.6 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 bash amd64 5.3-4 [1582 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 bc amd64 1.07.1-4 [103 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 binutils amd64 2.47.50.20261021-1 [288 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 binutils-common amd64 2.47.50.20261021-1 [2687 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.47.50.20261021-1 [1143 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libbinutils amd64 2.47.50.20261021-1 [566 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 build-essential amd64 12.12 [4624 B] Get:23 http://deb.debian.org/debian unstable/main amd64 bzip2 amd64 1.0.8-6+b2 [40.4 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libbz2-1.0 amd64 1.0.8-6+b2 [39.9 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 coreutils amd64 9.10-1 [3142 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 dash amd64 0.5.12-12 [98.5 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 debconf all 1.5.92 [123 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.5 [944 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debianutils amd64 5.24 [93.3 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 23 [12.7 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 dh-python all 7.20261019 [115 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 diffutils amd64 1:3.12-1 [405 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 dpkg amd64 1.23.11 [1214 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 dpkg-dev all 1.23.11 [1005 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.4-1+b2 [51.2 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 findutils amd64 4.11.0-3 [788 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-9 [840 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-9 [488 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 cpp-16 amd64 16.2.0-3 [1272 B] Get:45 http://deb.debian.org/debian unstable/main amd64 cpp-16-x86-64-linux-gnu amd64 16.2.0-3 [13.7 MB] Get:46 http://deb.debian.org/debian unstable/main amd64 g++-16 amd64 16.2.0-3 [35.4 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 g++-16-x86-64-linux-gnu amd64 16.2.0-3 [15.1 MB] Get:48 http://deb.debian.org/debian unstable/main amd64 gcc-16 amd64 16.2.0-3 [538 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 gcc-16-base amd64 16.2.0-3 [38.7 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 gcc-16-x86-64-linux-gnu amd64 16.2.0-3 [26.6 MB] Get:51 http://deb.debian.org/debian unstable/main amd64 gfortran-16 amd64 16.2.0-3 [16.5 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 gfortran-16-x86-64-linux-gnu amd64 16.2.0-3 [14.5 MB] Get:53 http://deb.debian.org/debian unstable/main amd64 libasan8 amd64 16.2.0-3 [2888 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libatomic1 amd64 16.2.0-3 [10.4 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 cpp amd64 4:16.1.0-3 [1568 B] Get:56 http://deb.debian.org/debian unstable/main amd64 cpp-x86-64-linux-gnu amd64 4:16.1.0-3 [4472 B] Get:57 http://deb.debian.org/debian unstable/main amd64 g++ amd64 4:16.1.0-3 [1340 B] Get:58 http://deb.debian.org/debian unstable/main amd64 g++-x86-64-linux-gnu amd64 4:16.1.0-3 [1196 B] Get:59 http://deb.debian.org/debian unstable/main amd64 gcc amd64 4:16.1.0-3 [5148 B] Get:60 http://deb.debian.org/debian unstable/main amd64 gcc-x86-64-linux-gnu amd64 4:16.1.0-3 [1432 B] Get:61 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:16.1.0-3 [1436 B] Get:62 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:16.1.0-3 [1276 B] Get:63 http://deb.debian.org/debian unstable/main amd64 autopoint all 1.0-5 [820 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 gettext amd64 1.0-5 [2704 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 1.0-5 [334 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libc-bin amd64 2.43-7 [621 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libc-dev-bin amd64 2.43-7 [39.7 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libc-gconv-modules-extra amd64 2.43-7 [1103 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libc6 amd64 2.43-7 [1866 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libc6-dev amd64 2.43-7 [2069 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 grep amd64 3.12-1 [443 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.2-2 [1365 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 gzip amd64 1.14-1 [149 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 2.2.0+repack-5 [27.6 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 hicolor-icon-theme all 0.18-2 [11.8 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 hostname amd64 3.25 [11.0 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 init-system-helpers all 1.69+nmu3 [37.3 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.22.1-3 [125 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-8 [219 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.7-1 [25.2 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.7-1 [22.3 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libb2-1 amd64 0.98.1-1.1+b3 [42.0 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-3 [132 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 ibverbs-providers amd64 65.0-1.1 [424 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libamdhip64-6 amd64 6.4.3-5 [9385 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libamd-comgr3 amd64 7.0.2+dfsg-3 [13.9 MB] Get:90 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:91 http://deb.debian.org/debian unstable/main amd64 libamd3 amd64 1:7.14.1+dfsg-1 [49.9 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libcamd3 amd64 1:7.14.1+dfsg-1 [46.9 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42.4-1 [103 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libblkid1 amd64 2.42.4-1 [185 kB] Get:95 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 libbrotli-dev amd64 1.2.0-4+b1 [324 kB] Get:96 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:97 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 imagemagick amd64 8:7.1.2.33+dfsg1-1 [27.4 kB] Get:98 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 imagemagick-7-common all 8:7.1.2.33+dfsg1-1 [75.3 kB] Get:99 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 imagemagick-7.q16 amd64 8:7.1.2.33+dfsg1-1 [734 kB] Get:100 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 libcap-ng0 amd64 0.9.6-1 [19.0 kB] Fetched 131 MB in 5s (27.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libc6_2.43-7_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libasound2-data_1.2.16.1-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/dpkg_1.23.11_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libcap-ng0_0.9.6-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/gettext_1.0-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libblas3_3.12.1-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/cpp-16_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/hostname_3.25_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/debhelper_14.5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/g++-16_16.2.0-3_amd64.deb' dpkg-name: info: moved 'libattr1_1%3a2.6.0-1_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/libattr1_2.6.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libbsd0_0.12.2-3_amd64.deb' dpkg-name: info: moved 'imagemagick-7.q16_8%3a7.1.2.33+dfsg1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/imagemagick-7.q16_7.1.2.33+dfsg1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libavahi-common3_0.8-18_amd64.deb' dpkg-name: info: moved 'file_1%3a5.47-4_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/file_5.47-4_amd64.deb' dpkg-name: info: moved 'diffutils_1%3a3.12-1_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/diffutils_3.12-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libbrotli-dev_1.2.0-4+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/bsdextrautils_2.42.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/build-essential_12.12_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/coreutils_9.10-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libcairo2_1.18.4-3+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/gzip_1.14-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libbrotli1_1.2.0-4+b1_amd64.deb' dpkg-name: info: moved 'gfortran_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/gfortran_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/gfortran-16-x86-64-linux-gnu_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libc-dev-bin_2.43-7_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/debianutils_5.24_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libarpack2t64_3.9.1-6+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/dwz_0.17-1_amd64.deb' dpkg-name: info: moved 'cpp-x86-64-linux-gnu_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/cpp-x86-64-linux-gnu_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libacl1_2.4.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/base-passwd_3.6.8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/autotools-dev_20240727.1+nmu1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/intltool-debian_0.35.0+20060710.6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/dh-strip-nondeterminism_1.15.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libblkid1_2.42.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/ibverbs-providers_65.0-1.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/grep_3.12-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/dash_0.5.12-12_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/gcc-16_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libc-gconv-modules-extra_2.43-7_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/debconf_1.5.92_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/comerr-dev_2.1-1.47.4-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/autopoint_1.0-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/fontconfig_2.17.1-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libamdhip64-6_6.4.3-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/hicolor-icon-theme_0.18-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/fontconfig-config_2.17.1-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libaec-dev_1.1.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libamd-comgr3_7.0.2+dfsg-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/g++-16-x86-64-linux-gnu_16.2.0-3_amd64.deb' dpkg-name: info: moved 'cpp_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/cpp_16.1.0-3_amd64.deb' dpkg-name: info: moved 'gcc_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/gcc_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libasan8_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libasound2t64_1.2.16.1-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/dpkg-dev_1.23.11_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/krb5-multidev_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libatomic1_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/hdf5-helpers_2.2.0+repack-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libc-bin_2.43-7_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/binutils-x86-64-linux-gnu_2.47.50.20261021-1_amd64.deb' dpkg-name: info: moved 'gfortran-x86-64-linux-gnu_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/gfortran-x86-64-linux-gnu_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libavahi-client3_0.8-18_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libarchive-zip-perl_1.68-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libb2-1_0.98.1-1.1+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/cpp-16-x86-64-linux-gnu_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/bc_1.07.1-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libavahi-common-data_0.8-18_amd64.deb' dpkg-name: info: moved 'imagemagick-7-common_8%3a7.1.2.33+dfsg1-1_all.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/imagemagick-7-common_7.1.2.33+dfsg1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/gettext-base_1.0-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/binutils-common_2.47.50.20261021-1_amd64.deb' dpkg-name: info: moved 'g++_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/g++_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/dh-python_7.20261019_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/gcc-16-base_16.2.0-3_amd64.deb' dpkg-name: info: moved 'libaudit-common_1%3a4.2.1-1_all.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/libaudit-common_4.2.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/groff-base_1.24.2-2_amd64.deb' dpkg-name: info: moved 'imagemagick_8%3a7.1.2.33+dfsg1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/imagemagick_7.1.2.33+dfsg1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/autoconf_2.73-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libbinutils_2.47.50.20261021-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/fonts-dejavu-core_2.37-9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/gfortran-16_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libbz2-1.0_1.0.8-6+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/bash_5.3-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/binutils_2.47.50.20261021-1_amd64.deb' dpkg-name: info: moved 'libaudit1_1%3a4.2.1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/libaudit1_4.2.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/fonts-dejavu-mono_2.37-9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/bzip2_1.0.8-6+b2_amd64.deb' dpkg-name: info: moved 'libcamd3_1%3a7.14.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/libcamd3_7.14.1+dfsg-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libc6-dev_2.43-7_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/findutils_4.11.0-3_amd64.deb' dpkg-name: info: moved 'libamd3_1%3a7.14.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/libamd3_7.14.1+dfsg-1_amd64.deb' dpkg-name: info: moved 'automake_1%3a1.19-3_all.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/automake_1.19-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libblas-dev_3.12.1-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/gcc-16-x86-64-linux-gnu_16.2.0-3_amd64.deb' dpkg-name: info: moved 'gcc-x86-64-linux-gnu_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/gcc-x86-64-linux-gnu_16.1.0-3_amd64.deb' dpkg-name: info: moved 'g++-x86-64-linux-gnu_4%3a16.1.0-3_amd64.deb' to '/srv/rebuilderd/tmp/tmppmpkbx93/g++-x86-64-linux-gnu_16.1.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/libaec0_1.1.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/init-system-helpers_1.69+nmu3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/base-files_14.2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmpkbx93/dh-autoreconf_23_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libctf-nobfd0 amd64 2.47.50.20261021-1 [166 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 libctf0 amd64 2.47.50.20261021-1 [97.6 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libgprofng0 amd64 2.47.50.20261021-1 [848 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libdebconfclient0 amd64 0.283 [7572 B] Get:5 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.20-1 [268 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls amd64 8.23.0-1 [463 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.23.0-1 [602 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.23.0-1 [469 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.4-1 [583 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-11+b1 [709 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.16.2-8 [184 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.5 [77.7 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libdouble-conversion3 amd64 3.4.0-1+b1 [40.7 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libdpkg-perl all 1.23.11 [650 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libduktape207 amd64 2.7.0-2+b3 [134 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.4-1+b2 [19.5 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 5.0.1-3 [1192 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.9.0-1 [133 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libfftw3-bin amd64 3.3.11-1 [46.6 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfftw3-dev amd64 3.3.11-1 [2063 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libfftw3-double3 amd64 3.3.11-1 [713 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libfftw3-long3 amd64 3.3.11-1 [313 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.11-1 [554 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libfftw3-single3 amd64 3.3.11-1 [738 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libflac14 amd64 1.5.0+ds-5+b1 [179 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libfltk-gl1.4 amd64 1.4.4-4 [85.6 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libfltk1.4 amd64 1.4.4-4 [595 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.14.3+dfsg-3 [510 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libfuse3-4 amd64 3.18.3-1 [109 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libcc1-0 amd64 16.2.0-3 [46.1 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libgcc-16-dev amd64 16.2.0-3 [2782 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libgcc-s1 amd64 16.2.0-3 [74.0 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libgfortran-16-dev amd64 16.2.0-3 [921 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 16.2.0-3 [879 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libgomp1 amd64 16.2.0-3 [151 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-4+b1 [43.0 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.90.1-2 [1620 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libglpk40 amd64 5.0-3 [392 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5+b2 [641 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5+b2 [560 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5+b2 [328 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.13-1 [496 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.13-1 [1479 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libgraphicsmagick++-q16-12t64 amd64 1.4+really1.3.49-1 [142 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libgraphicsmagick-q16-3t64 amd64 1.4+really1.3.49-1 [1364 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libgsl-dev amd64 2.8+dfsg-6+b1 [1248 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libgsl28 amd64 2.8+dfsg-6+b1 [1002 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libgslcblas0 amd64 2.8+dfsg-6+b1 [131 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libhdf5-320 amd64 2.2.0+repack-5 [2177 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-320 amd64 2.2.0+repack-5 [144 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 2.2.0+repack-5 [4248 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-320 amd64 2.2.0+repack-5 [123 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.22.1-3 [58.3 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.14-2 [39.1 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libde265-0 amd64 1.1.3-1+b1 [219 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libdecor-0-0 amd64 0.2.5-1+b1 [15.8 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.25-1 [56.7 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.134-3 [23.3 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.134-3 [7860 B] Get:70 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.134-3 [64.2 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.134-3 [38.5 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20260512-1 [93.6 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libesmtp6 amd64 1.1.0-3.2+b2 [59.3 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libevdev2 amd64 1.14.0+dfsg-1 [33.7 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.13-stable-1 [183 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.13-stable-1 [133 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.13-stable-1 [53.8 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libfabric1 amd64 2.1.0-1.1+b2 [716 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libglu1-mesa amd64 9.0.2-1.1+b4 [191 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libglu1-mesa-dev amd64 9.0.2-1.1+b4 [229 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libegl-dev amd64 1.7.0-3+b1 [18.7 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libegl1 amd64 1.7.0-3+b1 [35.0 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libgl-dev amd64 1.7.0-3+b1 [99.8 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libgl1 amd64 1.7.0-3+b1 [87.1 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-3+b1 [54.3 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libglx-dev amd64 1.7.0-3+b1 [15.0 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-3+b1 [34.9 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libgudev-1.0-0 amd64 238-7+b2 [14.4 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libcrypt1 amd64 1:4.5.2+20251210-1 [100 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libclang-common-21-dev amd64 1:21.1.8-14 [769 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libegl-mesa0 amd64 26.2.5-1 [140 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libgbm1 amd64 26.2.5-1 [57.0 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 26.2.5-1 [37.8 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 26.2.5-1 [132 kB] Get:96 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:97 http://deb.debian.org/debian unstable/main amd64 libccolamd3 amd64 1:7.14.1+dfsg-1 [49.2 kB] Get:98 http://deb.debian.org/debian unstable/main amd64 libcholmod5 amd64 1:7.14.1+dfsg-1 [713 kB] Get:99 http://deb.debian.org/debian unstable/main amd64 libcolamd3 amd64 1:7.14.1+dfsg-1 [41.9 kB] Get:100 http://deb.debian.org/debian unstable/main amd64 libcxsparse4 amd64 1:7.14.1+dfsg-1 [97.7 kB] Fetched 41.0 MB in 3s (12.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgprofng0_2.47.50.20261021-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libfftw3-dev_3.3.11-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libffi8_3.8.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libcurl4-openssl-dev_8.23.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libfabric1_2.1.0-1.1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libglu1-mesa_9.0.2-1.1+b4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgraphicsmagick-q16-3t64_1.4+really1.3.49-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libctf-nobfd0_2.47.50.20261021-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libglvnd0_1.7.0-3+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgudev-1.0-0_238-7+b2_amd64.deb' dpkg-name: warning: 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warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libharfbuzz0b_12.3.2-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libedit2_3.1-20260512-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libfile-stripnondeterminism-perl_1.15.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libctf0_2.47.50.20261021-1_amd64.deb' dpkg-name: info: moved 'libcolamd3_1%3a7.14.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpdpktp35x/libcolamd3_7.14.1+dfsg-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libflac14_1.5.0+ds-5+b1_amd64.deb' dpkg-name: info: moved 'libcholmod5_1%3a7.14.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpdpktp35x/libcholmod5_7.14.1+dfsg-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libhdf5-dev_2.2.0+repack-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgslcblas0_2.8+dfsg-6+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libdecor-0-0_0.2.5-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libeigen3-dev_5.0.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libfftw3-bin_3.3.11-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libglx-mesa0_26.2.5-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libfftw3-long3_3.3.11-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libdeflate-dev_1.25-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgdbm-compat4t64_1.26-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libevent-core-2.1-7t64_2.1.13-stable-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libduktape207_2.7.0-2+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libcc1-0_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libdrm-common_2.4.134-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libevent-pthreads-2.1-7t64_2.1.13-stable-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgfortran5_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libhdf5-fortran-320_2.2.0+repack-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libdrm-intel1_2.4.134-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libdouble-conversion3_3.4.0-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgnutls-dane0t64_3.8.13-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libesmtp6_1.1.0-3.2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libdbus-1-3_1.16.2-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgomp1_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libexpat1_2.9.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libhdf5-320_2.2.0+repack-5_amd64.deb' dpkg-name: info: moved 'libcrypt1_1%3a4.5.2+20251210-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpdpktp35x/libcrypt1_4.5.2+20251210-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgsl28_2.8+dfsg-6+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgl1-mesa-dri_26.2.5-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libelf1t64_0.196-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgl1_1.7.0-3+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libdrm-amdgpu1_2.4.134-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libfreetype6_2.14.3+dfsg-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libglib2.0-0t64_2.90.1-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libfftw3-double3_3.3.11-1_amd64.deb' dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-5+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpdpktp35x/libgmpxx4ldbl_6.3.0+dfsg-5+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgl2ps1.4_1.4.2+dfsg1-4+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libhdf5-cpp-320_2.2.0+repack-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgnutls28-dev_3.8.13-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libegl-mesa0_26.2.5-1_amd64.deb' dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpdpktp35x/libgmp10_6.3.0+dfsg-5+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libcurl4t64_8.23.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgcc-16-dev_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libcups2t64_2.4.20-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libdatrie1_0.2.14-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgcc-s1_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libfuse3-4_3.18.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgfortran-16-dev_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libcom-err2_1.47.4-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libdav1d7_1.5.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libde265-0_1.1.3-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libfontconfig1_2.17.1-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libfribidi0_1.0.16-5+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libevent-2.1-7t64_2.1.13-stable-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libevdev2_1.14.0+dfsg-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgraphicsmagick++-q16-12t64_1.4+really1.3.49-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libfltk-gl1.4_1.4.4-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgbm1_26.2.5-1_amd64.deb' dpkg-name: info: moved 'libccolamd3_1%3a7.14.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpdpktp35x/libccolamd3_7.14.1+dfsg-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libegl1_1.7.0-3+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libfftw3-single3_3.3.11-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libcurl4-gnutls_8.23.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgraphite2-3_1.3.15-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libdrm2_2.4.134-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libdeflate0_1.25-1_amd64.deb' dpkg-name: info: moved 'libclang-common-21-dev_1%3a21.1.8-14_amd64.deb' to '/srv/rebuilderd/tmp/tmpdpktp35x/libclang-common-21-dev_21.1.8-14_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgnutls30t64_3.8.13-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libegl-dev_1.7.0-3+b1_amd64.deb' dpkg-name: info: moved 'libcxsparse4_1%3a7.14.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpdpktp35x/libcxsparse4_7.14.1+dfsg-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libdpkg-perl_1.23.11_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgssapi-krb5-2_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libgsl-dev_2.8+dfsg-6+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libglpk40_5.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libglu1-mesa-dev_9.0.2-1.1+b4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpktp35x/libdebhelper-perl_14.5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libhwasan0 amd64 16.2.0-3 [1580 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libitm1 amd64 16.2.0-3 [26.9 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 liblsan0 amd64 16.2.0-3 [1281 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-320 amd64 2.2.0+repack-5 [82.0 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-320 amd64 2.2.0+repack-5 [27.4 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-320 amd64 2.2.0+repack-5 [50.1 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-320 amd64 2.2.0+repack-5 [2273 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libhwy1t64 amd64 1.3.0-5.1 [694 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libhwloc-plugins amd64 2.15.0-2 [22.4 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.15.0-2 [178 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:14 http://deb.debian.org/debian unstable/main amd64 libisl23 amd64 0.28-1 [667 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libjack-jackd2-0 amd64 1.9.22~dfsg-6 [284 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libjansson4 amd64 2.15.1-1 [65.6 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libjbig-dev amd64 2.1-6.1+b3 [31.4 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libjxl0.11 amd64 0.11.2-5.1 [1273 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:21 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.22.1-3 [40.3 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.22.1-3 [54.1 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.22.1-3 [41.3 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.22.1-3 [14.0 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libmp3lame0 amd64 4.0-1 [289 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-8 [5230 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.19.1-1 [164 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 liblerc-dev amd64 4.2.0+ds-1 [205 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.2.0+ds-1 [203 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libopengl-dev amd64 1.7.0-3+b1 [4580 B] Get:35 http://deb.debian.org/debian unstable/main amd64 libopengl0 amd64 1.7.0-3+b1 [30.4 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-dav1d amd64 1.23.6-2 [22.1 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-libde265 amd64 1.23.6-2 [19.6 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libheif1 amd64 1.23.6-2 [885 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-5 [102 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libinput-bin amd64 1.31.3-1 [28.0 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libinput10 amd64 1.31.3-1 [160 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libintl-perl all 1.37-1 [696 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:3.1.3-4 [78.8 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:3.1.3-4 [356 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 liblqr-1-0 amd64 0.4.2-2.2+b1 [30.0 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libmd0 amd64 1.3.0-1 [45.4 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libnl-3-200 amd64 3.12.0-2+b1 [62.2 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.12.0-2+b1 [200 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libogg0 amd64 1.3.6-2+b1 [24.0 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.19-2 [18.5 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.6.2-3 [427 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libllvm21 amd64 1:21.1.8-14 [28.3 MB] Get:56 http://deb.debian.org/debian unstable/main amd64 libllvm22 amd64 1:22.1.8-3 [29.4 MB] Get:57 http://deb.debian.org/debian unstable/main amd64 libmd4c0 amd64 0.5.3-1 [49.5 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libmpc3 amd64 1.3.1-3 [52.2 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libmpfr6 amd64 4.2.2-3 [729 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libmpg123-0t64 amd64 1.33.7-1 [154 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libmtdev1t64 amd64 1.1.7-1+b2 [23.2 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libncurses-dev amd64 6.6+20260608-2 [356 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.6+20260608-2 [107 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libhogweed6t64 amd64 3.10.2-1+b1 [335 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libnettle8t64 amd64 3.10.2-1+b1 [305 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.70.0-1 [131 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.17.0-1 [96.3 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl-dev amd64 1.24.0-1 [27.5 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.24.0-1 [204 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.19-1+b2 [22.0 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.4-1.1 [205 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.14+dfsg-2 [321 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libopenmpi40 amd64 6.0.0~rc2-2 [2880 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libopus0 amd64 1.6.1-1+b1 [3484 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.26.5-1 [226 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libpam-modules amd64 1.7.0-8 [168 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libpam-modules-bin amd64 1.7.0-8 [46.3 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libpam-runtime all 1.7.0-8 [246 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libpam0g amd64 1.7.0-8 [66.9 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.58.2-1 [233 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.58.2-1 [35.3 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.58.2-1 [56.0 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.48-3.1 [295 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libibmad5 amd64 65.0-1.1 [44.3 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libibumad3 amd64 65.0-1.1 [29.8 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libibverbs1 amd64 65.0-1.1 [68.2 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 libhsa-runtime64-1 amd64 6.4.3+dfsg-5 [678 kB] Get:96 http://deb.debian.org/debian unstable/main amd64 libmount1 amd64 2.42.4-1 [232 kB] Get:97 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.8.4-1 [391 kB] Get:98 http://deb.debian.org/debian unstable/main amd64 liblzma5 amd64 5.8.4-1 [354 kB] Get:99 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 libmagickcore-7.q16-10 amd64 8:7.1.2.33+dfsg1-1 [1969 kB] Get:100 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 libmagickwand-7.q16-10 amd64 8:7.1.2.33+dfsg1-1 [368 kB] Fetched 106 MB in 3s (36.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libpangocairo-1.0-0_1.58.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libheif-plugin-dav1d_1.23.6-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libngtcp2-crypto-ossl0_1.24.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libncurses-dev_6.6+20260608-2_amd64.deb' dpkg-name: info: moved 'libmagickwand-7.q16-10_8%3a7.1.2.33+dfsg1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp2rmdplqg/libmagickwand-7.q16-10_7.1.2.33+dfsg1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libhsa-runtime64-1_6.4.3+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libopenjp2-7_2.5.4-1.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libkrb5-dev_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/liblapack-dev_3.12.1-8_amd64.deb' dpkg-name: 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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libk5crypto3_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libhdf5-hl-fortran-320_2.2.0+repack-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libibumad3_65.0-1.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libhwloc15_2.15.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libkrb5support0_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libmp3lame0_4.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libinput10_1.31.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/liblqr-1-0_0.4.2-2.2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libintl-perl_1.37-1_all.deb' dpkg-name: info: moved 'libllvm21_1%3a21.1.8-14_amd64.deb' to '/srv/rebuilderd/tmp/tmp2rmdplqg/libllvm21_21.1.8-14_amd64.deb' dpkg-name: 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'/srv/rebuilderd/tmp/tmp2rmdplqg/libngtcp2-dev_1.24.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libpam0g_1.7.0-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libmount1_2.42.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libmpg123-0t64_1.33.7-1_amd64.deb' dpkg-name: info: moved 'libmagic1t64_1%3a5.47-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp2rmdplqg/libmagic1t64_5.47-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libhogweed6t64_3.10.2-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libopenmpi40_6.0.0~rc2-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libmtdev1t64_1.1.7-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libldap-dev_2.6.14+dfsg-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libopengl0_1.7.0-3+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libnettle8t64_3.10.2-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libkeyutils1_1.6.3-6+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libhwloc-plugins_2.15.0-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libpam-modules-bin_1.7.0-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libhdf5-openmpi-320_2.2.0+repack-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libidn2-0_2.3.8-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libpcre2-16-0_10.48-3.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libnl-route-3-200_3.12.0-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libjack-jackd2-0_1.9.22~dfsg-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libisl23_0.28-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libnghttp3-9_1.17.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libnghttp2-14_1.70.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libhwasan0_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libopus0_1.6.1-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libjbig-dev_2.1-6.1+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libnuma1_2.0.19-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libkrb5-3_1.22.1-3_amd64.deb' dpkg-name: info: moved 'libmagickcore-7.q16-10_8%3a7.1.2.33+dfsg1-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp2rmdplqg/libmagickcore-7.q16-10_7.1.2.33+dfsg1-1_amd64.deb' dpkg-name: info: moved 'libjpeg-dev_1%3a3.1.3-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp2rmdplqg/libjpeg-dev_3.1.3-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libkadm5clnt-mit12_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libkdb5-10t64_1.22.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libpam-runtime_1.7.0-8_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libopengl-dev_1.7.0-3+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libngtcp2-16_1.24.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libngtcp2-crypto-gnutls8_1.24.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libhwy1t64_1.3.0-5.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libngtcp2-crypto-ossl-dev_1.24.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libp11-kit-dev_0.26.5-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libhdf5-hl-320_2.2.0+repack-5_amd64.deb' dpkg-name: info: moved 'libice6_2%3a1.1.1-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmp2rmdplqg/libice6_1.1.1-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libmpfr6_4.2.2-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libidn2-dev_2.3.8-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/liblcms2-2_2.19.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libp11-kit0_0.26.5-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libicu78_78.3-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/liblzma5_5.8.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libmpc3_1.3.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/liblapack3_3.12.1-8_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libhdf5-hl-cpp-320_2.2.0+repack-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libinput-bin_1.31.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/liblsan0_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/liblerc-dev_4.2.0+ds-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libmd4c0_0.5.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libncursesw6_6.6+20260608-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libnghttp3-dev_1.17.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libibverbs1_65.0-1.1_amd64.deb' dpkg-name: info: moved 'libmagic-mgc_1%3a5.47-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp2rmdplqg/libmagic-mgc_5.47-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libjbig0_2.1-6.1+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libnl-3-200_3.12.0-2+b1_amd64.deb' dpkg-name: info: moved 'libjpeg62-turbo_1%3a3.1.3-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp2rmdplqg/libjpeg62-turbo_3.1.3-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rmdplqg/libpango-1.0-0_1.58.2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsframe3 amd64 2.47.50.20261021-1 [86.3 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-12 [59.4 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-12 [18.4 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libquadmath0 amd64 16.2.0-3 [148 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libstdc++-16-dev amd64 16.2.0-3 [2755 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libstdc++6 amd64 16.2.0-3 [823 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libtsan2 amd64 16.2.0-3 [2574 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libubsan1 amd64 16.2.0-3 [1136 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.59-1 [293 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libproxy1v5 amd64 0.5.12-3 [25.1 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.23.3-1 [30.1 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libraw25 amd64 0.22.1-1 [424 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libsamplerate0 amd64 0.2.2-4+b3 [954 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libsndfile1 amd64 1.2.2-4+b1 [205 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-6 [402 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.21.0-2+b1 [98.6 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:25 http://deb.debian.org/debian unstable/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:27 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.30-3 [172 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.30-3 [51.7 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libtool all 2.6.2-3 [552 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libunistring-dev amd64 1.4.2-1 [651 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libsharpyuv-dev amd64 1.6.0-0.1 [120 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.6.0-0.1 [116 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.2-2+b2 [37.2 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libtinfo6 amd64 6.6+20260608-2 [353 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.6.5-1 [3165 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libssl3t64 amd64 3.6.5-1 [2621 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libpcre2-8-0 amd64 10.48-3.1 [312 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libperl5.42 amd64 5.42.3-1 [4272 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libpmix2t64 amd64 7.0.0~rc1-2 [839 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libportaudio2 amd64 19.7.0-1+b1 [65.0 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libproc2-1 amd64 2:4.0.7-1 [73.0 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-9 [248 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libqrupdate1 amd64 1.2.0-1 [42.7 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libqscintilla2-qt6-15 amd64 2.14.1+dfsg-4 [1256 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libqscintilla2-qt6-l10n all 2.14.1+dfsg-4 [103 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libqt6core5compat6 amd64 6.11.2-2 [152 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libqt6core6t64 amd64 6.11.2+dfsg-6 [2072 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libqt6dbus6 amd64 6.11.2+dfsg-6 [294 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libqt6gui6 amd64 6.11.2+dfsg-6 [3515 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libqt6network6 amd64 6.11.2+dfsg-6 [879 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libqt6opengl6 amd64 6.11.2+dfsg-6 [462 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libqt6openglwidgets6 amd64 6.11.2+dfsg-6 [48.0 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libqt6printsupport6 amd64 6.11.2+dfsg-6 [227 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libqt6sql6 amd64 6.11.2+dfsg-6 [157 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libqt6widgets6 amd64 6.11.2+dfsg-6 [2795 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libqt6xml6 amd64 6.11.2+dfsg-6 [88.3 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libqt6help6 amd64 6.11.2-2 [202 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libqt5concurrent5t64 amd64 5.15.19+dfsg-5 [38.5 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libqt5core5t64 amd64 5.15.19+dfsg-5 [1974 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libqt5dbus5t64 amd64 5.15.19+dfsg-5 [217 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libqt5gui5t64 amd64 5.15.19+dfsg-5 [3655 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libqt5network5t64 amd64 5.15.19+dfsg-5 [703 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libqt5opengl5-dev amd64 5.15.19+dfsg-5 [45.2 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libqt5opengl5t64 amd64 5.15.19+dfsg-5 [149 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libqt5printsupport5t64 amd64 5.15.19+dfsg-5 [204 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libqt5sql5t64 amd64 5.15.19+dfsg-5 [123 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libqt5test5t64 amd64 5.15.19+dfsg-5 [148 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libqt5widgets5t64 amd64 5.15.19+dfsg-5 [2499 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libqt5xml5t64 amd64 5.15.19+dfsg-5 [126 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libqt5svg5 amd64 5.15.19-2 [136 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libqt5svg5-dev amd64 5.15.19-2 [12.0 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 librdmacm1t64 amd64 65.0-1.1 [79.2 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libreadline-dev amd64 8.3-4 [163 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.6-1 [69.7 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.6-1 [60.3 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libspqr4 amd64 1:7.14.1+dfsg-1 [160 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libsuitesparseconfig7 amd64 1:7.14.1+dfsg-1 [32.8 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libumfpack6 amd64 1:7.14.1+dfsg-1 [299 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libsystemd-shared amd64 262.1-1 [2792 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libsystemd0 amd64 262.1-1 [512 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libudev1 amd64 262.1-1 [149 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libtiff-dev amd64 4.7.2-1 [532 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libtiffxx6 amd64 4.7.2-1 [190 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libts0t64 amd64 1.22-1.1+b2 [61.9 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libucc1 amd64 1.9.0-2 [368 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.26.2-1 [665 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libsmartcols1 amd64 2.42.4-1 [153 kB] Get:95 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 libseccomp2 amd64 2.6.1-1+b1 [51.7 kB] Get:96 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 libselinux1 amd64 3.11-2.1 [92.2 kB] Get:97 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:98 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 libpython3.14-minimal amd64 3.14.8-1 [902 kB] Get:99 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 libpython3.14-stdlib amd64 3.14.8-1 [2367 kB] Get:100 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 libucx0 amd64 1.22.0-3 [1027 kB] Fetched 59.4 MB in 4s (14.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libportaudio2_19.7.0-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libproxy1v5_0.5.12-3_amd64.deb' dpkg-name: info: moved 'libsensors-config_1%3a3.6.2-2_all.deb' to '/srv/rebuilderd/tmp/tmpv0jt_1vn/libsensors-config_3.6.2-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt5widgets5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqscintilla2-qt6-l10n_2.14.1+dfsg-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libsystemd-shared_262.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt5svg5_5.15.19-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libpmix2t64_7.0.0~rc1-2_amd64.deb' dpkg-name: warning: 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'/srv/rebuilderd/tmp/tmpv0jt_1vn/libsharpyuv-dev_1.6.0-0.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libucc1_1.9.0-2_amd64.deb' dpkg-name: info: moved 'libsensors5_1%3a3.6.2-2+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpv0jt_1vn/libsensors5_3.6.2-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libssh2-1-dev_1.11.1-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt6network6_6.11.2+dfsg-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libreadline-dev_8.3-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libtiffxx6_4.7.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libsqlite3-0_3.53.4-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libtiff-dev_4.7.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libpython3.14-stdlib_3.14.8-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt5test5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: info: moved 'libsuitesparseconfig7_1%3a7.14.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpv0jt_1vn/libsuitesparseconfig7_7.14.1+dfsg-1_amd64.deb' dpkg-name: info: moved 'libspqr4_1%3a7.14.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpv0jt_1vn/libspqr4_7.14.1+dfsg-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt6openglwidgets6_6.11.2+dfsg-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libtsan2_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/librtmp1_2.6-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt6core6t64_6.11.2+dfsg-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libpcre2-8-0_10.48-3.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt6widgets6_6.11.2+dfsg-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt6sql6_6.11.2+dfsg-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqrupdate1_1.2.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libstdc++6_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libtasn1-6_4.21.0-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libsharpyuv0_1.6.0-0.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt5dbus5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqhull-r8.0_2020.2-9_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libssl-dev_3.6.5-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libpixman-1-0_0.46.4-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libtext-charwidth-perl_0.04-12+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libpython3-stdlib_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libssl3t64_3.6.5-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libseccomp2_2.6.1-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libtasn1-6-dev_4.21.0-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt6core5compat6_6.11.2-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libsamplerate0_0.2.2-4+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libquadmath0_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libsz2_1.1.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libsndfile1_1.2.2-4+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libsmartcols1_2.42.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt6dbus6_6.11.2+dfsg-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libssh2-1t64_1.11.1-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libselinux1_3.11-2.1_amd64.deb' dpkg-name: info: moved 'libproc2-1_2%3a4.0.7-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpv0jt_1vn/libproc2-1_4.0.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libunistring-dev_1.4.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libthai-data_0.1.30-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libpkgconf7_2.5.1-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libts0t64_1.22-1.1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt5printsupport5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt5xml5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt6printsupport6_6.11.2+dfsg-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt5gui5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: info: moved 'libumfpack6_1%3a7.14.1+dfsg-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpv0jt_1vn/libumfpack6_7.14.1+dfsg-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libsystemd0_262.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libunbound8_1.26.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libpsm2-2_11.2.185-2.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt5concurrent5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libsasl2-modules-db_2.1.28+dfsg1-12_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/librdmacm1t64_65.0-1.1_amd64.deb' dpkg-name: info: moved 'libsm6_2%3a1.2.6-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmpv0jt_1vn/libsm6_1.2.6-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libuchardet0_0.0.8-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt6gui6_6.11.2+dfsg-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/librtmp-dev_2.6-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt5core5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libpipeline1_1.5.8-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libpsl-dev_0.23.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt6xml6_6.11.2+dfsg-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libtext-unidecode-perl_1.30-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libpng16-16t64_1.6.59-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libtext-wrapi18n-perl_0.06-11_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libpython3.14-minimal_3.14.8-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libreadline8t64_8.3-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt5svg5-dev_5.15.19-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqscintilla2-qt6-15_2.14.1+dfsg-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt6opengl6_6.11.2+dfsg-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libsframe3_2.47.50.20261021-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libperl5.42_5.42.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libthai0_0.1.30-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libstdc++-16-dev_16.2.0-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt5opengl5-dev_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt6help6_6.11.2-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libqt5sql5t64_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0jt_1vn/libtool_2.6.2-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libze1 amd64 1.32.0-1 [648 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 liburing2 amd64 2.15-1 [29.5 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libvorbis0a amd64 1.3.7-3+b2 [93.2 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libvorbisenc2 amd64 1.3.7-3+b2 [76.1 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libwacom-common all 2.20.0-1 [119 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libwacom9 amd64 2.20.0-1 [26.5 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libwebp-dev amd64 1.6.0-0.1 [488 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.6.0-0.1 [349 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libwebpdecoder3 amd64 1.6.0-0.1 [232 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.6.0-0.1 [114 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.6.0-0.1 [127 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libwmflite-0.2-7 amd64 0.2.14-1 [74.1 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.13-1 [903 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.13-1 [250 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1+b2 [23.9 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b2 [107 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2+b2 [122 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2+b2 [106 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2+b2 [117 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxcb-shape0 amd64 1.17.0-2+b2 [106 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2+b2 [109 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b2 [109 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libxcb-xinerama0 amd64 1.17.0-2+b2 [105 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libxcb-xinput0 amd64 1.17.0-2+b2 [130 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libxcb-xkb1 amd64 1.17.0-2+b2 [130 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b2 [181 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libxcursor1 amd64 1:1.2.3-1+b2 [40.3 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-2+b1 [44.0 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libxext-dev amd64 2:1.3.4-1+b4 [105 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libxfixes3 amd64 1:6.0.0-2+b5 [20.3 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libxinerama1 amd64 2:1.1.4-3+b5 [16.0 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libxkbcommon-x11-0 amd64 1.13.1-1 [21.0 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libxkbcommon0 amd64 1.13.1-1 [148 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-8+b1 [314 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-5 [53.6 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1+b3 [14.1 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3.3-1+b2 [11.2 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-2+b1 [20.2 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-4 [371 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libzstd1 amd64 1.5.7+dfsg-4 [304 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 make amd64 4.4.1-3 [463 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 matlab-support-dev all 0.5 [5232 B] Get:57 http://deb.debian.org/debian unstable/main amd64 mawk amd64 1.3.4.20260302-2 [145 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 mesa-libgallium amd64 26.2.5-1 [11.9 MB] Get:60 http://deb.debian.org/debian unstable/main amd64 ncurses-base all 6.6+20260608-2 [276 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 ncurses-bin amd64 6.6+20260608-2 [445 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 netbase all 6.6 [10.3 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.2-1+b1 [1321 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.4-1+b1 [42.8 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 octave amd64 11.3.0-1+b1 [9834 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 octave-common all 11.3.0-1 [6779 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 octave-dev amd64 11.3.0-1+b1 [1124 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 openssl-provider-legacy amd64 3.6.5-1 [329 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 perl amd64 5.42.3-1 [266 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 perl-base amd64 5.42.3-1 [1878 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 2.5.1-4 [33.6 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.7-1 [989 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 qt5-qmake amd64 5.15.19+dfsg-5 [217 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 qt5-qmake-bin amd64 5.15.19+dfsg-5 [1100 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 qtbase5-dev amd64 5.15.19+dfsg-5 [1119 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 qtbase5-dev-tools amd64 5.15.19+dfsg-5 [788 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libuuid1 amd64 2.42.4-1 [34.5 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libvulkan-dev amd64 1.4.363.0-1 [1952 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.4.363.0-1 [173 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libwayland-client0 amd64 1.26.0-1 [29.4 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libwayland-cursor0 amd64 1.26.0-1 [11.8 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libwayland-egl1 amd64 1.26.0-1 [5688 B] Get:86 http://deb.debian.org/debian unstable/main amd64 libxcb-util1 amd64 0.4.1-1+b2 [23.8 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libxcb-cursor0 amd64 0.1.6-1 [17.8 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-2+b3 [22.3 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.1-1+b2 [17.0 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.10-1+b2 [18.7 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.2-1+b2 [27.7 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1.1 [8644 kB] Get:93 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:94 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 linux-libc-dev all 7.2.11-1 [2029 kB] Get:95 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 patch amd64 2.8-2 [134 kB] Get:96 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 pci.ids all 0.0~2026.09.23-1 [287 kB] Get:97 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:98 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 python3-minimal amd64 3.14.7-3 [25.3 kB] Get:99 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 python3.14 amd64 3.14.8-1 [874 kB] Get:100 http://snapshot.debian.org/archive/debian/20261023T023732Z unstable/main amd64 python3.14-minimal amd64 3.14.8-1 [2715 kB] Fetched 70.6 MB in 3s (23.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxml-sax-base-perl_1.09-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/openssl-provider-legacy_3.6.5-1_amd64.deb' dpkg-name: info: moved 'libxxf86vm1_1%3a1.1.4-2+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/libxxf86vm1_1.1.4-2+b1_amd64.deb' dpkg-name: info: moved 'libxrender1_1%3a0.9.12-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/libxrender1_0.9.12-1+b2_amd64.deb' dpkg-name: info: moved 'libxext6_2%3a1.3.4-1+b4_amd64.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/libxext6_1.3.4-1+b4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libvorbisenc2_1.3.7-3+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libwacom-common_2.20.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/ncurses-base_6.6+20260608-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-icccm4_0.4.2-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/liburing2_2.15-1_amd64.deb' dpkg-name: info: moved 'procps_2%3a4.0.7-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/procps_4.0.7-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/patch_2.8-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libwayland-client0_1.26.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/octave-dev_11.3.0-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxkbcommon-x11-0_1.13.1-1_amd64.deb' dpkg-name: info: moved 'libxau6_1%3a1.0.11-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/libxau6_1.0.11-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/pkgconf-bin_2.5.1-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-xinerama0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-xfixes0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxml-sax-perl_1.02+dfsg-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-xinput0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libwebp7_1.6.0-0.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/perl-base_5.42.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/qt5-qmake_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/ncurses-bin_6.6+20260608-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libze1_1.32.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libvulkan-dev_1.4.363.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/po-debconf_1.0.22_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-randr0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-util1_0.4.1-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/python3_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/perl-modules-5.42_5.42.3-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libz3-4_4.13.3-1.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/pci.ids_0.0~2026.09.23-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-shape0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-keysyms1_0.4.1-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/python3-minimal_3.14.7-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/make_4.4.1-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-glx0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-cursor0_0.1.6-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/m4_1.4.21-1_amd64.deb' dpkg-name: info: moved 'libxau-dev_1%3a1.0.11-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/libxau-dev_1.0.11-1+b2_amd64.deb' dpkg-name: info: moved 'libxcursor1_1%3a1.2.3-1+b2_amd64.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcursor1_1.2.3-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/python3.14_3.14.8-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libwebpmux3_1.6.0-0.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb1_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxml-libxml-perl_2.0207+dfsg+really+2.0134-8+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxkbcommon0_1.13.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/perl_5.42.3-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/mawk_1.3.4.20260302-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-render-util0_0.3.10-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-render0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libwacom9_2.20.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/media-types_14.0.0_all.deb' dpkg-name: info: moved 'libx11-6_2%3a1.8.13-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/libx11-6_1.8.13-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/matlab-support-dev_0.5_all.deb' dpkg-name: info: moved 'libxfixes3_1%3a6.0.0-2+b5_amd64.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/libxfixes3_6.0.0-2+b5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/qtbase5-dev-tools_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/nettle-dev_3.10.2-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libwebpdecoder3_1.6.0-0.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libuuid1_2.42.4-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libwmflite-0.2-7_0.2.14-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxml2-16_2.15.4+dfsg-1_amd64.deb' dpkg-name: info: moved 'libxinerama1_2%3a1.1.4-3+b5_amd64.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/libxinerama1_1.1.4-3+b5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/octave_11.3.0-1+b1_amd64.deb' dpkg-name: info: moved 'libxdmcp-dev_1%3a1.1.5-2+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/libxdmcp-dev_1.1.5-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-sync1_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/ocl-icd-libopencl1_2.3.4-1+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libwebpdemux2_1.6.0-0.1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-dri3-0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/python3.14-minimal_3.14.8-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libzstd1_1.5.7+dfsg-4_amd64.deb' dpkg-name: info: moved 'libx11-dev_2%3a1.8.13-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/libx11-dev_1.8.13-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/netbase_6.6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-shm0_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libvorbis0a_1.3.7-3+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb1-dev_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxnvctrl0_535.171.04-1+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libzstd-dev_1.5.7+dfsg-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libwebp-dev_1.6.0-0.1_amd64.deb' dpkg-name: info: moved 'libx11-xcb1_2%3a1.8.13-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/libx11-xcb1_1.8.13-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libwayland-egl1_1.26.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libunistring5_1.4.2-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/linux-libc-dev_7.2.11-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libwayland-cursor0_1.26.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libvulkan1_1.4.363.0-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/pkgconf_2.5.1-4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-xkb1_1.17.0-2+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/mesa-libgallium_26.2.5-1_amd64.deb' dpkg-name: info: moved 'libxext-dev_2%3a1.3.4-1+b4_amd64.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/libxext-dev_1.3.4-1+b4_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/qtbase5-dev_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/qt5-qmake-bin_5.15.19+dfsg-5_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxml-namespacesupport-perl_1.12-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/man-db_2.13.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-present0_1.17.0-2+b2_amd64.deb' dpkg-name: info: moved 'libxdmcp6_1%3a1.1.5-2+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/libxdmcp6_1.1.5-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/octave-common_11.3.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxshmfence1_1.3.3-1+b2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0z8x69xi/libxcb-image0_0.4.0-2+b3_amd64.deb' dpkg-name: info: moved 'libx11-data_2%3a1.8.13-1_all.deb' to '/srv/rebuilderd/tmp/tmp0z8x69xi/libx11-data_1.8.13-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-4 [74.8 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 sed amd64 4.9-3 [331 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 systemd amd64 262.1-1 [3477 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 sysvinit-utils amd64 3.18-1 [29.7 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 tar amd64 1.35+dfsg-6 [825 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.21 [29.2 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 texinfo all 7.3-2 [1877 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 texinfo-lib amd64 7.3-2+b1 [704 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 tzdata all 2026e-1 [262 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0056 [47.1 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 util-linux amd64 2.42.4-1 [1254 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 xkb-data all 2.48-1 [841 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.12.1-1 [23.9 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2025.1-1 [605 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.6.0-1 [93.5 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 xz-utils amd64 5.8.4-1 [761 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.2-3 [90.9 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Fetched 13.3 MB in 0s (27.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/qtchooser_66-2_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/sensible-utils_0.0.26_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/xkb-data_2.48-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/xtrans-dev_1.6.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/util-linux_2.42.4-1_amd64.deb' dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmph8iji5y6/zlib1g_1.3.dfsg+really1.3.2-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/ucf_3.0056_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/readline-common_8.3-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/shared-mime-info_2.4-5+b3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/texinfo_7.3-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/tar_1.35+dfsg-6_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/systemd_262.1-1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/texinfo-lib_7.3-2+b1_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/tex-common_6.21_all.deb' dpkg-name: info: moved 'x11-common_1%3a7.7+26_all.deb' to '/srv/rebuilderd/tmp/tmph8iji5y6/x11-common_7.7+26_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/xz-utils_5.8.4-1_amd64.deb' dpkg-name: info: moved 'xorg-sgml-doctools_1%3a1.12.1-1_all.deb' to '/srv/rebuilderd/tmp/tmph8iji5y6/xorg-sgml-doctools_1.12.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/sed_4.9-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/x11proto-dev_2025.1-1_all.deb' dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmph8iji5y6/zlib1g-dev_1.3.dfsg+really1.3.2-3_amd64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/tzdata_2026e-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph8iji5y6/sysvinit-utils_3.18-1_amd64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpauip9jzj/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.dEQBUS0u6Z as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.dEQBUS0u6Z 127.0.0.1 - - [25/Oct/2026 01:01:43] code 404, message File not found 127.0.0.1 - - [25/Oct/2026 01:01:43] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:38177 ./ InRelease 127.0.0.1 - - [25/Oct/2026 01:01:43] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:38177 ./ Release [462 B] 127.0.0.1 - - [25/Oct/2026 01:01:43] code 404, message File not found 127.0.0.1 - - [25/Oct/2026 01:01:43] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:38177 ./ Release.gpg 127.0.0.1 - - [25/Oct/2026 01:01:43] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:38177 ./ Packages [651 kB] Fetched 651 kB in 0s (32.3 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - 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127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./gfortran-16-x86-64-linux-gnu_16.2.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./gfortran-16_16.2.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./gfortran-x86-64-linux-gnu_16.1.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./gfortran_16.1.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./octave-dev_11.3.0-1%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./dh-python_7.20261019_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./hicolor-icon-theme_0.18-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./imagemagick-7.q16_7.1.2.33%2bdfsg1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./imagemagick_7.1.2.33%2bdfsg1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./libtiffxx6_4.7.2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./libqt5opengl5t64_5.15.19%2bdfsg-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./libjbig-dev_2.1-6.1%2bb3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./libwebpdecoder3_1.6.0-0.1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./libwebp-dev_1.6.0-0.1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./libdeflate-dev_1.25-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./liblerc-dev_4.2.0%2bds-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./libtiff-dev_4.7.2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./libqt5opengl5-dev_5.15.19%2bdfsg-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./libgslcblas0_2.8%2bdfsg-6%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./libgsl28_2.8%2bdfsg-6%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./libeigen3-dev_5.0.1-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./libgsl-dev_2.8%2bdfsg-6%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [25/Oct/2026 01:02:03] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpauip9jzj/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.dEQBUS0u6Z Reading package lists... Building dependency tree... Reading state information... libc6 is already the newest version (2.43-7). libasound2-data is already the newest version (1.2.16.1-2). libasound2-data set to manually installed. imagemagick is already the newest version (8:7.1.2.33+dfsg1-1). imagemagick set to manually installed. dpkg is already the newest version (1.23.11). imagemagick-7-common is already the newest version (8:7.1.2.33+dfsg1-1). imagemagick-7-common set to manually installed. libcap-ng0 is already the newest version (0.9.6-1). gettext is already the newest version (1.0-5). gettext set to manually installed. libblas3 is already the newest version (3.12.1-8). libblas3 set to manually installed. cpp-16 is already the newest version (16.2.0-3). cpp-16 set to manually installed. libattr1 is already the newest version (1:2.6.0-1). hostname is already the newest version (3.25). debhelper is already the newest version (14.5). debhelper set to manually installed. g++-16 is already the newest version (16.2.0-3). g++-16 set to manually installed. automake is already the newest version (1:1.19-3). automake set to manually installed. libbsd0 is already the newest version (0.12.2-3). libbsd0 set to manually installed. libavahi-common3 is already the newest version (0.8-18). libavahi-common3 set to manually installed. libbrotli-dev is already the newest version (1.2.0-4+b1). libbrotli-dev set to manually installed. bsdextrautils is already the newest version (2.42.4-1). bsdextrautils set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. coreutils is already the newest version (9.10-1). libcairo2 is already the newest version (1.18.4-3+b1). libcairo2 set to manually installed. gzip is already the newest version (1.14-1). libbrotli1 is already the newest version (1.2.0-4+b1). libbrotli1 set to manually installed. imagemagick-7.q16 is already the newest version (8:7.1.2.33+dfsg1-1). imagemagick-7.q16 set to manually installed. gfortran-16-x86-64-linux-gnu is already the newest version (16.2.0-3). gfortran-16-x86-64-linux-gnu set to manually installed. gfortran-x86-64-linux-gnu is already the newest version (4:16.1.0-3). gfortran-x86-64-linux-gnu set to manually installed. libc-dev-bin is already the newest version (2.43-7). libc-dev-bin set to manually installed. debianutils is already the newest version (5.24). libarpack2t64 is already the newest version (3.9.1-6+b2). libarpack2t64 set to manually installed. dwz is already the newest version (0.17-1). dwz set to manually installed. libacl1 is already the newest version (2.4.0-1). base-passwd is already the newest version (3.6.8). g++ is already the newest version (4:16.1.0-3). g++ set to manually installed. autotools-dev is already the newest version (20240727.1+nmu1). autotools-dev set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. cpp-x86-64-linux-gnu is already the newest version (4:16.1.0-3). cpp-x86-64-linux-gnu set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.1-1). dh-strip-nondeterminism set to manually installed. libblkid1 is already the newest version (2.42.4-1). ibverbs-providers is already the newest version (65.0-1.1). ibverbs-providers set to manually installed. grep is already the newest version (3.12-1). dash is already the newest version (0.5.12-12). gcc-16 is already the newest version (16.2.0-3). gcc-16 set to manually installed. libc-gconv-modules-extra is already the newest version (2.43-7). debconf is already the newest version (1.5.92). comerr-dev is already the newest version (2.1-1.47.4-1+b2). comerr-dev set to manually installed. libamd3 is already the newest version (1:7.14.1+dfsg-1). libamd3 set to manually installed. autopoint is already the newest version (1.0-5). autopoint set to manually installed. fontconfig is already the newest version (2.17.1-5). fontconfig set to manually installed. libamdhip64-6 is already the newest version (6.4.3-5). libamdhip64-6 set to manually installed. hicolor-icon-theme is already the newest version (0.18-2). hicolor-icon-theme set to manually installed. fontconfig-config is already the newest version (2.17.1-5). fontconfig-config set to manually installed. libaec-dev is already the newest version (1.1.7-1). libaec-dev set to manually installed. gfortran is already the newest version (4:16.1.0-3). gfortran set to manually installed. file is already the newest version (1:5.47-4). file set to manually installed. libamd-comgr3 is already the newest version (7.0.2+dfsg-3). libamd-comgr3 set to manually installed. gcc is already the newest version (4:16.1.0-3). gcc set to manually installed. g++-16-x86-64-linux-gnu is already the newest version (16.2.0-3). g++-16-x86-64-linux-gnu set to manually installed. libasan8 is already the newest version (16.2.0-3). libasan8 set to manually installed. libasound2t64 is already the newest version (1.2.16.1-2). libasound2t64 set to manually installed. dpkg-dev is already the newest version (1.23.11). dpkg-dev set to manually installed. krb5-multidev is already the newest version (1.22.1-3). krb5-multidev set to manually installed. libatomic1 is already the newest version (16.2.0-3). libatomic1 set to manually installed. hdf5-helpers is already the newest version (2.2.0+repack-5). hdf5-helpers set to manually installed. libc-bin is already the newest version (2.43-7). binutils-x86-64-linux-gnu is already the newest version (2.47.50.20261021-1). binutils-x86-64-linux-gnu set to manually installed. libavahi-client3 is already the newest version (0.8-18). libavahi-client3 set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libb2-1 is already the newest version (0.98.1-1.1+b3). libb2-1 set to manually installed. cpp-16-x86-64-linux-gnu is already the newest version (16.2.0-3). cpp-16-x86-64-linux-gnu set to manually installed. bc is already the newest version (1.07.1-4). bc set to manually installed. libavahi-common-data is already the newest version (0.8-18). libavahi-common-data set to manually installed. gettext-base is already the newest version (1.0-5). gettext-base set to manually installed. g++-x86-64-linux-gnu is already the newest version (4:16.1.0-3). g++-x86-64-linux-gnu set to manually installed. binutils-common is already the newest version (2.47.50.20261021-1). binutils-common set to manually installed. dh-python is already the newest version (7.20261019). dh-python set to manually installed. gcc-16-base is already the newest version (16.2.0-3). groff-base is already the newest version (1.24.2-2). groff-base set to manually installed. autoconf is already the newest version (2.73-2). autoconf set to manually installed. libbinutils is already the newest version (2.47.50.20261021-1). libbinutils set to manually installed. cpp is already the newest version (4:16.1.0-3). cpp set to manually installed. fonts-dejavu-core is already the newest version (2.37-9). fonts-dejavu-core set to manually installed. diffutils is already the newest version (1:3.12-1). gfortran-16 is already the newest version (16.2.0-3). gfortran-16 set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6+b2). bash is already the newest version (5.3-4). binutils is already the newest version (2.47.50.20261021-1). binutils set to manually installed. fonts-dejavu-mono is already the newest version (2.37-9). fonts-dejavu-mono set to manually installed. gcc-x86-64-linux-gnu is already the newest version (4:16.1.0-3). gcc-x86-64-linux-gnu set to manually installed. bzip2 is already the newest version (1.0.8-6+b2). bzip2 set to manually installed. libaudit-common is already the newest version (1:4.2.1-1). libcamd3 is already the newest version (1:7.14.1+dfsg-1). libcamd3 set to manually installed. libc6-dev is already the newest version (2.43-7). libc6-dev set to manually installed. libaudit1 is already the newest version (1:4.2.1-1). findutils is already the newest version (4.11.0-3). libblas-dev is already the newest version (3.12.1-8). libblas-dev set to manually installed. gcc-16-x86-64-linux-gnu is already the newest version (16.2.0-3). gcc-16-x86-64-linux-gnu set to manually installed. libaec0 is already the newest version (1.1.7-1). libaec0 set to manually installed. init-system-helpers is already the newest version (1.69+nmu3). base-files is already the newest version (14.2). dh-autoreconf is already the newest version (23). dh-autoreconf set to manually installed. libgprofng0 is already the newest version (2.47.50.20261021-1). libgprofng0 set to manually installed. libfftw3-dev is already the newest version (3.3.11-1). libfftw3-dev set to manually installed. libffi8 is already the newest version (3.8.0-2). libffi8 set to manually installed. libcurl4-openssl-dev is already the newest version (8.23.0-1). libcurl4-openssl-dev set to manually installed. libfabric1 is already the newest version (2.1.0-1.1+b2). libfabric1 set to manually installed. libglu1-mesa is already the newest version (9.0.2-1.1+b4). libglu1-mesa set to manually installed. libcholmod5 is already the newest version (1:7.14.1+dfsg-1). libcholmod5 set to manually installed. libclang-common-21-dev is already the newest version (1:21.1.8-14). libclang-common-21-dev set to manually installed. libgraphicsmagick-q16-3t64 is already the newest version (1.4+really1.3.49-1). libgraphicsmagick-q16-3t64 set to manually installed. libctf-nobfd0 is already the newest version (2.47.50.20261021-1). libctf-nobfd0 set to manually installed. libglvnd0 is already the newest version (1.7.0-3+b1). libglvnd0 set to manually installed. libgudev-1.0-0 is already the newest version (238-7+b2). libgudev-1.0-0 set to manually installed. libfltk1.4 is already the newest version (1.4.4-4). libfltk1.4 set to manually installed. libgdbm6t64 is already the newest version (1.26-1+b2). libgdbm6t64 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-11+b1). libfftw3-quad3 is already the newest version (3.3.11-1). libfftw3-quad3 set to manually installed. libgssrpc4t64 is already the newest version (1.22.1-3). libgssrpc4t64 set to manually installed. libgl-dev is already the newest version (1.7.0-3+b1). libgl-dev set to manually installed. libglx-dev is already the newest version (1.7.0-3+b1). libglx-dev set to manually installed. libcolamd3 is already the newest version (1:7.14.1+dfsg-1). libcolamd3 set to manually installed. libglx0 is already the newest version (1.7.0-3+b1). libglx0 set to manually installed. libdebconfclient0 is already the newest version (0.283). libharfbuzz0b is already the newest version (12.3.2-2+b2). libharfbuzz0b set to manually installed. libedit2 is already the newest version (3.1-20260512-1). libedit2 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.1-1). libfile-stripnondeterminism-perl set to manually installed. libctf0 is already the newest version (2.47.50.20261021-1). libctf0 set to manually installed. libflac14 is already the newest version (1.5.0+ds-5+b1). libflac14 set to manually installed. libhdf5-dev is already the newest version (2.2.0+repack-5). libhdf5-dev set to manually installed. libgslcblas0 is already the newest version (2.8+dfsg-6+b1). libgslcblas0 set to manually installed. libdecor-0-0 is already the newest version (0.2.5-1+b1). libdecor-0-0 set to manually installed. libeigen3-dev is already the newest version (5.0.1-3). libeigen3-dev set to manually installed. libfftw3-bin is already the newest version (3.3.11-1). libfftw3-bin set to manually installed. libglx-mesa0 is already the newest version (26.2.5-1). libglx-mesa0 set to manually installed. libfftw3-long3 is already the newest version (3.3.11-1). libfftw3-long3 set to manually installed. libdeflate-dev is already the newest version (1.25-1). libdeflate-dev set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1+b2). libgdbm-compat4t64 set to manually installed. libevent-core-2.1-7t64 is already the newest version (2.1.13-stable-1). libevent-core-2.1-7t64 set to manually installed. libcrypt1 is already the newest version (1:4.5.2+20251210-1). libduktape207 is already the newest version (2.7.0-2+b3). libduktape207 set to manually installed. libcc1-0 is already the newest version (16.2.0-3). libcc1-0 set to manually installed. libdrm-common is already the newest version (2.4.134-3). libdrm-common set to manually installed. libevent-pthreads-2.1-7t64 is already the newest version (2.1.13-stable-1). libevent-pthreads-2.1-7t64 set to manually installed. libgfortran5 is already the newest version (16.2.0-3). libgfortran5 set to manually installed. libhdf5-fortran-320 is already the newest version (2.2.0+repack-5). libhdf5-fortran-320 set to manually installed. libdrm-intel1 is already the newest version (2.4.134-3). libdrm-intel1 set to manually installed. libdouble-conversion3 is already the newest version (3.4.0-1+b1). libdouble-conversion3 set to manually installed. libgnutls-dane0t64 is already the newest version (3.8.13-1). libgnutls-dane0t64 set to manually installed. libesmtp6 is already the newest version (1.1.0-3.2+b2). libesmtp6 set to manually installed. libdbus-1-3 is already the newest version (1.16.2-8). libdbus-1-3 set to manually installed. libgomp1 is already the newest version (16.2.0-3). libgomp1 set to manually installed. libexpat1 is already the newest version (2.9.0-1). libexpat1 set to manually installed. libhdf5-320 is already the newest version (2.2.0+repack-5). libhdf5-320 set to manually installed. libgsl28 is already the newest version (2.8+dfsg-6+b1). libgsl28 set to manually installed. libgl1-mesa-dri is already the newest version (26.2.5-1). libgl1-mesa-dri set to manually installed. libelf1t64 is already the newest version (0.196-1). libelf1t64 set to manually installed. libgl1 is already the newest version (1.7.0-3+b1). libgl1 set to manually installed. libdrm-amdgpu1 is already the newest version (2.4.134-3). libdrm-amdgpu1 set to manually installed. libfreetype6 is already the newest version (2.14.3+dfsg-3). libfreetype6 set to manually installed. libccolamd3 is already the newest version (1:7.14.1+dfsg-1). libccolamd3 set to manually installed. libglib2.0-0t64 is already the newest version (2.90.1-2). libglib2.0-0t64 set to manually installed. libfftw3-double3 is already the newest version (3.3.11-1). libfftw3-double3 set to manually installed. libgl2ps1.4 is already the newest version (1.4.2+dfsg1-4+b1). libgl2ps1.4 set to manually installed. libhdf5-cpp-320 is already the newest version (2.2.0+repack-5). libhdf5-cpp-320 set to manually installed. libgnutls28-dev is already the newest version (3.8.13-1). libgnutls28-dev set to manually installed. libegl-mesa0 is already the newest version (26.2.5-1). libegl-mesa0 set to manually installed. libcurl4t64 is already the newest version (8.23.0-1). libcurl4t64 set to manually installed. libgcc-16-dev is already the newest version (16.2.0-3). libgcc-16-dev set to manually installed. libcups2t64 is already the newest version (2.4.20-1). libcups2t64 set to manually installed. libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-5+b2). libgmpxx4ldbl set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5+b2). libgmp-dev is already the newest version (2:6.3.0+dfsg-5+b2). libgmp-dev set to manually installed. libdatrie1 is already the newest version (0.2.14-2). libdatrie1 set to manually installed. libgcc-s1 is already the newest version (16.2.0-3). libfuse3-4 is already the newest version (3.18.3-1). libfuse3-4 set to manually installed. libgfortran-16-dev is already the newest version (16.2.0-3). libgfortran-16-dev set to manually installed. libcom-err2 is already the newest version (1.47.4-1+b2). libcom-err2 set to manually installed. libdav1d7 is already the newest version (1.5.4-1). libdav1d7 set to manually installed. libde265-0 is already the newest version (1.1.3-1+b1). libde265-0 set to manually installed. libfontconfig1 is already the newest version (2.17.1-5). libfontconfig1 set to manually installed. libfribidi0 is already the newest version (1.0.16-5+b1). libfribidi0 set to manually installed. libevent-2.1-7t64 is already the newest version (2.1.13-stable-1). libevent-2.1-7t64 set to manually installed. libevdev2 is already the newest version (1.14.0+dfsg-1). libevdev2 set to manually installed. libgraphicsmagick++-q16-12t64 is already the newest version (1.4+really1.3.49-1). libgraphicsmagick++-q16-12t64 set to manually installed. libfltk-gl1.4 is already the newest version (1.4.4-4). libfltk-gl1.4 set to manually installed. libgbm1 is already the newest version (26.2.5-1). libgbm1 set to manually installed. libcxsparse4 is already the newest version 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manually installed. libgsl-dev is already the newest version (2.8+dfsg-6+b1). libgsl-dev set to manually installed. libglpk40 is already the newest version (5.0-3). libglpk40 set to manually installed. libglu1-mesa-dev is already the newest version (9.0.2-1.1+b4). libglu1-mesa-dev set to manually installed. libdebhelper-perl is already the newest version (14.5). libdebhelper-perl set to manually installed. libpangocairo-1.0-0 is already the newest version (1.58.2-1). libpangocairo-1.0-0 set to manually installed. libheif-plugin-dav1d is already the newest version (1.23.6-2). libheif-plugin-dav1d set to manually installed. libngtcp2-crypto-ossl0 is already the newest version (1.24.0-1). libngtcp2-crypto-ossl0 set to manually installed. libncurses-dev is already the newest version (6.6+20260608-2). libncurses-dev set to manually installed. libhsa-runtime64-1 is already the newest version (6.4.3+dfsg-5). libhsa-runtime64-1 set to manually installed. libopenjp2-7 is already the newest 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libjpeg62-turbo is already the newest version (1:3.1.3-4). libjpeg62-turbo set to manually installed. libpam-modules is already the newest version (1.7.0-8). libibmad5 is already the newest version (65.0-1.1). libibmad5 set to manually installed. libheif-plugin-libde265 is already the newest version (1.23.6-2). libheif-plugin-libde265 set to manually installed. libjansson4 is already the newest version (2.15.1-1). libjansson4 set to manually installed. libk5crypto3 is already the newest version (1.22.1-3). libk5crypto3 set to manually installed. libhdf5-hl-fortran-320 is already the newest version (2.2.0+repack-5). libhdf5-hl-fortran-320 set to manually installed. libibumad3 is already the newest version (65.0-1.1). libibumad3 set to manually installed. libhwloc15 is already the newest version (2.15.0-2). libhwloc15 set to manually installed. libkrb5support0 is already the newest version (1.22.1-3). libkrb5support0 set to manually installed. libmp3lame0 is already the newest version 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libnghttp2-dev is already the newest version (1.70.0-1). libnghttp2-dev set to manually installed. libmd0 is already the newest version (1.3.0-1). libldap2 is already the newest version (2.6.14+dfsg-2). libldap2 set to manually installed. libmagickcore-7.q16-10 is already the newest version (8:7.1.2.33+dfsg1-1). libmagickcore-7.q16-10 set to manually installed. libngtcp2-dev is already the newest version (1.24.0-1). libngtcp2-dev set to manually installed. libpam0g is already the newest version (1.7.0-8). libmount1 is already the newest version (2.42.4-1). libmpg123-0t64 is already the newest version (1.33.7-1). libmpg123-0t64 set to manually installed. libhogweed6t64 is already the newest version (3.10.2-1+b1). libhogweed6t64 set to manually installed. libllvm21 is already the newest version (1:21.1.8-14). libllvm21 set to manually installed. libopenmpi40 is already the newest version (6.0.0~rc2-2). libopenmpi40 set to manually installed. libmtdev1t64 is already the newest version (1.1.7-1+b2). libmtdev1t64 set to manually installed. libldap-dev is already the newest version (2.6.14+dfsg-2). libldap-dev set to manually installed. libopengl0 is already the newest version (1.7.0-3+b1). libopengl0 set to manually installed. libnettle8t64 is already the newest version (3.10.2-1+b1). libnettle8t64 set to manually installed. libkeyutils1 is already the newest version (1.6.3-6+b2). libkeyutils1 set to manually installed. libhwloc-plugins is already the newest version (2.15.0-2). libhwloc-plugins set to manually installed. libpam-modules-bin is already the newest version (1.7.0-8). libhdf5-openmpi-320 is already the newest version (2.2.0+repack-5). libhdf5-openmpi-320 set to manually installed. libidn2-0 is already the newest version (2.3.8-5). libidn2-0 set to manually installed. libpcre2-16-0 is already the newest version (10.48-3.1). libpcre2-16-0 set to manually installed. libnl-route-3-200 is already the newest version (3.12.0-2+b1). libnl-route-3-200 set to manually installed. libjack-jackd2-0 is already the newest version (1.9.22~dfsg-6). libjack-jackd2-0 set to manually installed. libisl23 is already the newest version (0.28-1). libisl23 set to manually installed. libmagickwand-7.q16-10 is already the newest version (8:7.1.2.33+dfsg1-1). libmagickwand-7.q16-10 set to manually installed. libnghttp3-9 is already the newest version (1.17.0-1). libnghttp3-9 set to manually installed. libnghttp2-14 is already the newest version (1.70.0-1). libnghttp2-14 set to manually installed. libhwasan0 is already the newest version (16.2.0-3). libhwasan0 set to manually installed. libopus0 is already the newest version (1.6.1-1+b1). libopus0 set to manually installed. libjbig-dev is already the newest version (2.1-6.1+b3). libjbig-dev set to manually installed. libnuma1 is already the newest version (2.0.19-1+b2). libnuma1 set to manually installed. libkrb5-3 is already the newest version (1.22.1-3). libkrb5-3 set to manually installed. libkadm5clnt-mit12 is already the newest version (1.22.1-3). libkadm5clnt-mit12 set to manually installed. libkdb5-10t64 is already the newest version (1.22.1-3). libkdb5-10t64 set to manually installed. libpam-runtime is already the newest version (1.7.0-8). libopengl-dev is already the newest version (1.7.0-3+b1). libopengl-dev set to manually installed. libngtcp2-16 is already the newest version (1.24.0-1). libngtcp2-16 set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.24.0-1). libngtcp2-crypto-gnutls8 set to manually installed. libhwy1t64 is already the newest version (1.3.0-5.1). libhwy1t64 set to manually installed. libngtcp2-crypto-ossl-dev is already the newest version (1.24.0-1). libngtcp2-crypto-ossl-dev set to manually installed. libp11-kit-dev is already the newest version (0.26.5-1). libp11-kit-dev set to manually installed. libhdf5-hl-320 is already the newest version (2.2.0+repack-5). libhdf5-hl-320 set to manually installed. libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. libllvm22 is already the newest version (1:22.1.8-3). libllvm22 set to manually installed. libidn2-dev is already the newest version (2.3.8-5). libidn2-dev set to manually installed. liblcms2-2 is already the newest version (2.19.1-1). liblcms2-2 set to manually installed. libp11-kit0 is already the newest version (0.26.5-1). libp11-kit0 set to manually installed. libjpeg-dev is already the newest version (1:3.1.3-4). libjpeg-dev set to manually installed. libicu78 is already the newest version (78.3-2). libicu78 set to manually installed. liblzma5 is already the newest version (5.8.4-1). libmpc3 is already the newest version (1.3.1-3). libmpc3 set to manually installed. liblapack3 is already the newest version (3.12.1-8). liblapack3 set to manually installed. libhdf5-hl-cpp-320 is already the newest version (2.2.0+repack-5). libhdf5-hl-cpp-320 set to manually installed. libinput-bin is already the newest 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installed. libproxy1v5 is already the newest version (0.5.12-3). libproxy1v5 set to manually installed. libsensors-config is already the newest version (1:3.6.2-2). libsensors-config set to manually installed. libqt5widgets5t64 is already the newest version (5.15.19+dfsg-5). libqt5widgets5t64 set to manually installed. libqscintilla2-qt6-l10n is already the newest version (2.14.1+dfsg-4). libqscintilla2-qt6-l10n set to manually installed. libsystemd-shared is already the newest version (262.1-1). libsystemd-shared set to manually installed. libproc2-1 is already the newest version (2:4.0.7-1). libproc2-1 set to manually installed. libqt5svg5 is already the newest version (5.15.19-2). libqt5svg5 set to manually installed. libpmix2t64 is already the newest version (7.0.0~rc1-2). libpmix2t64 set to manually installed. libucx0 is already the newest version (1.22.0-3). libucx0 set to manually installed. libsm6 is already the newest version (2:1.2.6-1+b2). libsm6 set to manually installed. 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newest version (1:3.6.2-2+b2). libsensors5 set to manually installed. libsamplerate0 is already the newest version (0.2.2-4+b3). libsamplerate0 set to manually installed. libquadmath0 is already the newest version (16.2.0-3). libquadmath0 set to manually installed. libsz2 is already the newest version (1.1.7-1). libsz2 set to manually installed. libsndfile1 is already the newest version (1.2.2-4+b1). libsndfile1 set to manually installed. libsmartcols1 is already the newest version (2.42.4-1). libqt6dbus6 is already the newest version (6.11.2+dfsg-6). libqt6dbus6 set to manually installed. libssh2-1t64 is already the newest version (1.11.1-6). libssh2-1t64 set to manually installed. libselinux1 is already the newest version (3.11-2.1). libunistring-dev is already the newest version (1.4.2-1). libunistring-dev set to manually installed. libthai-data is already the newest version (0.1.30-3). libthai-data set to manually installed. libpkgconf7 is already the newest version (2.5.1-4). 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set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-12). libsasl2-modules-db set to manually installed. librdmacm1t64 is already the newest version (65.0-1.1). librdmacm1t64 set to manually installed. libuchardet0 is already the newest version (0.0.8-2+b2). libuchardet0 set to manually installed. libqt6gui6 is already the newest version (6.11.2+dfsg-6). libqt6gui6 set to manually installed. librtmp-dev is already the newest version (2.6-1). librtmp-dev set to manually installed. libqt5core5t64 is already the newest version (5.15.19+dfsg-5). libqt5core5t64 set to manually installed. libpipeline1 is already the newest version (1.5.8-3). libpipeline1 set to manually installed. libpsl-dev is already the newest version (0.23.3-1). libpsl-dev set to manually installed. libqt6xml6 is already the newest version (6.11.2+dfsg-6). libqt6xml6 set to manually installed. libtext-unidecode-perl is already the newest version (1.30-3). libtext-unidecode-perl set 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(0.1.30-3). libthai0 set to manually installed. libstdc++-16-dev is already the newest version (16.2.0-3). libstdc++-16-dev set to manually installed. libqt5opengl5-dev is already the newest version (5.15.19+dfsg-5). libqt5opengl5-dev set to manually installed. libqt6help6 is already the newest version (6.11.2-2). libqt6help6 set to manually installed. libqt5sql5t64 is already the newest version (5.15.19+dfsg-5). libqt5sql5t64 set to manually installed. libtool is already the newest version (2.6.2-3). libtool set to manually installed. libxml-sax-base-perl is already the newest version (1.09-3). libxml-sax-base-perl set to manually installed. openssl-provider-legacy is already the newest version (3.6.5-1). libxau-dev is already the newest version (1:1.0.11-1+b2). libxau-dev set to manually installed. libvorbisenc2 is already the newest version (1.3.7-3+b2). libvorbisenc2 set to manually installed. libx11-xcb1 is already the newest version (2:1.8.13-1). libx11-xcb1 set to manually installed. libwacom-common is already the newest version (2.20.0-1). libwacom-common set to manually installed. ncurses-base is already the newest version (6.6+20260608-2). libxcb-icccm4 is already the newest version (0.4.2-1+b2). libxcb-icccm4 set to manually installed. liburing2 is already the newest version (2.15-1). liburing2 set to manually installed. libxdmcp-dev is already the newest version (1:1.1.5-2+b1). libxdmcp-dev set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. libwayland-client0 is already the newest version (1.26.0-1). libwayland-client0 set to manually installed. octave-dev is already the newest version (11.3.0-1+b1). octave-dev set to manually installed. libxkbcommon-x11-0 is already the newest version (1.13.1-1). libxkbcommon-x11-0 set to manually installed. pkgconf-bin is already the newest version (2.5.1-4). pkgconf-bin set to manually installed. libxfixes3 is already the newest version (1:6.0.0-2+b5). libxfixes3 set to manually installed. libxcb-xinerama0 is already the newest version (1.17.0-2+b2). libxcb-xinerama0 set to manually installed. libxcb-xfixes0 is already the newest version (1.17.0-2+b2). libxcb-xfixes0 set to manually installed. libxml-sax-perl is already the newest version (1.02+dfsg-5). libxml-sax-perl set to manually installed. libxcb-xinput0 is already the newest version (1.17.0-2+b2). libxcb-xinput0 set to manually installed. libwebp7 is already the newest version (1.6.0-0.1). libwebp7 set to manually installed. perl-base is already the newest version (5.42.3-1). qt5-qmake is already the newest version (5.15.19+dfsg-5). qt5-qmake set to manually installed. ncurses-bin is already the newest version (6.6+20260608-2). libze1 is already the newest version (1.32.0-1). libze1 set to manually installed. libvulkan-dev is already the newest version (1.4.363.0-1). libvulkan-dev set to manually installed. po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. libxcb-randr0 is already the newest version (1.17.0-2+b2). libxcb-randr0 set to manually installed. libxcb-util1 is already the newest version (0.4.1-1+b2). libxcb-util1 set to manually installed. python3 is already the newest version (3.14.7-3). python3 set to manually installed. perl-modules-5.42 is already the newest version (5.42.3-1). perl-modules-5.42 set to manually installed. libz3-4 is already the newest version (4.13.3-1.1). libz3-4 set to manually installed. pci.ids is already the newest version (0.0~2026.09.23-1). pci.ids set to manually installed. libxcb-shape0 is already the newest version (1.17.0-2+b2). libxcb-shape0 set to manually installed. libxcb-keysyms1 is already the newest version (0.4.1-1+b2). libxcb-keysyms1 set to manually installed. python3-minimal is already the newest version (3.14.7-3). python3-minimal set to manually installed. make is already the newest version (4.4.1-3). make set to manually installed. libxcb-glx0 is already the newest version (1.17.0-2+b2). libxcb-glx0 set to manually installed. libxcb-cursor0 is already the newest version (0.1.6-1). libxcb-cursor0 set to manually installed. m4 is already the newest version (1.4.21-1). m4 set to manually installed. libxau6 is already the newest version (1:1.0.11-1+b2). libxau6 set to manually installed. libxext6 is already the newest version (2:1.3.4-1+b4). libxext6 set to manually installed. python3.14 is already the newest version (3.14.8-1). python3.14 set to manually installed. libwebpmux3 is already the newest version (1.6.0-0.1). libwebpmux3 set to manually installed. libxcb1 is already the newest version (1.17.0-2+b2). libxcb1 set to manually installed. libxml-libxml-perl is already the newest version (2.0207+dfsg+really+2.0134-8+b1). libxml-libxml-perl set to manually installed. libxkbcommon0 is already the newest version (1.13.1-1). libxkbcommon0 set to manually installed. perl is already the newest version (5.42.3-1). perl set to manually installed. mawk is already the newest version (1.3.4.20260302-2). libxxf86vm1 is already the newest version (1:1.1.4-2+b1). libxxf86vm1 set to manually installed. libxcb-render-util0 is already the newest version (0.3.10-1+b2). libxcb-render-util0 set to manually installed. libxcb-render0 is already the newest version (1.17.0-2+b2). libxcb-render0 set to manually installed. libwacom9 is already the newest version (2.20.0-1). libwacom9 set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. matlab-support-dev is already the newest version (0.5). matlab-support-dev set to manually installed. qtbase5-dev-tools is already the newest version (5.15.19+dfsg-5). qtbase5-dev-tools set to manually installed. nettle-dev is already the newest version (3.10.2-1+b1). nettle-dev set to manually installed. libwebpdecoder3 is already the newest version (1.6.0-0.1). libwebpdecoder3 set to manually installed. libuuid1 is already the newest version (2.42.4-1). libwmflite-0.2-7 is already the newest version (0.2.14-1). libwmflite-0.2-7 set to manually installed. libxml2-16 is already the newest version (2.15.4+dfsg-1). libxml2-16 set to manually installed. libxinerama1 is already the newest version (2:1.1.4-3+b5). libxinerama1 set to manually installed. octave is already the newest version (11.3.0-1+b1). octave set to manually installed. libxcb-sync1 is already the newest version (1.17.0-2+b2). libxcb-sync1 set to manually installed. ocl-icd-libopencl1 is already the newest version (2.3.4-1+b1). ocl-icd-libopencl1 set to manually installed. procps is already the newest version (2:4.0.7-1). procps set to manually installed. libx11-dev is already the newest version (2:1.8.13-1). libx11-dev set to manually installed. libwebpdemux2 is already the newest version (1.6.0-0.1). libwebpdemux2 set to manually installed. libxcb-dri3-0 is already the newest version (1.17.0-2+b2). libxcb-dri3-0 set to manually installed. python3.14-minimal is already the newest version (3.14.8-1). python3.14-minimal set to manually installed. libx11-6 is already the newest version (2:1.8.13-1). libx11-6 set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-4). libxrender1 is already the newest version (1:0.9.12-1+b2). libxrender1 set to manually installed. netbase is already the newest version (6.6). netbase set to manually installed. libxcb-shm0 is already the newest version (1.17.0-2+b2). libxcb-shm0 set to manually installed. libx11-data is already the newest version (2:1.8.13-1). libx11-data set to manually installed. libvorbis0a is already the newest version (1.3.7-3+b2). libvorbis0a set to manually installed. libxcb1-dev is already the newest version (1.17.0-2+b2). libxcb1-dev set to manually installed. libxnvctrl0 is already the newest version (535.171.04-1+b3). libxnvctrl0 set to manually installed. libzstd-dev is already the newest version (1.5.7+dfsg-4). libzstd-dev set to manually installed. libwebp-dev is already the newest version (1.6.0-0.1). libwebp-dev set to manually installed. libxcursor1 is already the newest version (1:1.2.3-1+b2). libxcursor1 set to manually installed. libwayland-egl1 is already the newest version (1.26.0-1). libwayland-egl1 set to manually installed. libunistring5 is already the newest version (1.4.2-1). libunistring5 set to manually installed. linux-libc-dev is already the newest version (7.2.11-1). linux-libc-dev set to manually installed. libwayland-cursor0 is already the newest version (1.26.0-1). libwayland-cursor0 set to manually installed. libvulkan1 is already the newest version (1.4.363.0-1). libvulkan1 set to manually installed. pkgconf is already the newest version (2.5.1-4). pkgconf set to manually installed. libxcb-xkb1 is already the newest version (1.17.0-2+b2). libxcb-xkb1 set to manually installed. mesa-libgallium is already the newest version (26.2.5-1). mesa-libgallium set to manually installed. libxext-dev is already the newest version (2:1.3.4-1+b4). libxext-dev set to manually installed. qtbase5-dev is already the newest version (5.15.19+dfsg-5). qtbase5-dev set to manually installed. libxdmcp6 is already the newest version (1:1.1.5-2+b1). libxdmcp6 set to manually installed. qt5-qmake-bin is already the newest version (5.15.19+dfsg-5). qt5-qmake-bin set to manually installed. libxml-namespacesupport-perl is already the newest version (1.12-2). libxml-namespacesupport-perl set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. libxcb-present0 is already the newest version (1.17.0-2+b2). libxcb-present0 set to manually installed. octave-common is already the newest version (11.3.0-1). octave-common set to manually installed. libxshmfence1 is already the newest version (1.3.3-1+b2). libxshmfence1 set to manually installed. libxcb-image0 is already the newest version (0.4.0-2+b3). libxcb-image0 set to manually installed. qtchooser is already the newest version (66-2). qtchooser set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. xkb-data is already the newest version (2.48-1). xkb-data set to manually installed. xtrans-dev is already the newest version (1.6.0-1). xtrans-dev set to manually installed. util-linux is already the newest version (2.42.4-1). ucf is already the newest version (3.0056). ucf set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. x11-common is already the newest version (1:7.7+26). x11-common set to manually installed. shared-mime-info is already the newest version (2.4-5+b3). shared-mime-info set to manually installed. texinfo is already the newest version (7.3-2). texinfo set to manually installed. tar is already the newest version (1.35+dfsg-6). xorg-sgml-doctools is already the newest version (1:1.12.1-1). xorg-sgml-doctools set to manually installed. systemd is already the newest version (262.1-1). systemd set to manually installed. texinfo-lib is already the newest version (7.3-2+b1). texinfo-lib set to manually installed. tex-common is already the newest version (6.21). tex-common set to manually installed. xz-utils is already the newest version (5.8.4-1). xz-utils set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev set to manually installed. sed is already the newest version (4.9-3). x11proto-dev is already the newest version (2025.1-1). x11proto-dev set to manually installed. tzdata is already the newest version (2026e-1). tzdata set to manually installed. sysvinit-utils is already the newest version (3.18-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.dEQBUS0u6Z (Reading database ... 32230 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.dEQBUS0u6Z I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.dEQBUS0u6Z I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.dEQBUS0u6Z... I: success in 254.6794 seconds Downloading packages 1to 100 out of 522 Downloading packages 101to 200 out of 522 Downloading packages 201to 300 out of 522 Downloading packages 301to 400 out of 522 Downloading packages 401to 500 out of 522 Downloading packages 501to 522 out of 522 env --chdir=/srv/rebuilderd/tmp/rebuilderdkBZfY5/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1792624800 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildYEbEvp/debrebuild.sbuildrc.58HRUUPU7n_q sbuild --build=amd64 --host=amd64 --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildYEbEvp/debrebuild.tar.bcfYMsIui4SL --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --no-source --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=mrtrix3-3.0.8 /srv/rebuilderd/tmp/rebuilderdkBZfY5/inputs/mrtrix3_3.0.8-4.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on osuosl44-amd64.novalocal +==============================================================================+ | mrtrix3 3.0.8-4 (amd64) Sun, 25 Oct 2026 01:05:59 +0000 | +==============================================================================+ Package: mrtrix3 Version: 3.0.8-4 Source Version: 3.0.8-4 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildYEbEvp/debrebuild.tar.bcfYMsIui4SL to /srv/rebuilderd/tmp/tmp.sbuild.2pSBS4iBPa... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Sun, 25 Oct 2026 01:06:04 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdkBZfY5/inputs/mrtrix3_3.0.8-4.dsc exists in /srv/rebuilderd/tmp/rebuilderdkBZfY5/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 25 Oct 2026 01:06:05 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 14), bc, dh-python, imagemagick, libeigen3-dev, libgsl-dev, libqt5opengl5-dev, libqt5svg5-dev, libtiff-dev, matlab-support-dev, octave-dev, pkgconf, python3, qtbase5-dev, build-essential Merged Build-Conflicts: clang Filtered Build-Depends: debhelper-compat (= 14), bc, dh-python, imagemagick, libeigen3-dev, libgsl-dev, libqt5opengl5-dev, libqt5svg5-dev, libtiff-dev, matlab-support-dev, octave-dev, pkgconf, python3, qtbase5-dev, build-essential Filtered Build-Conflicts: clang dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-odfksF/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Sun, 25 Oct 2026 01:06:08 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any-amd64 arm64 all) +------------------------------------------------------------------------------+ | Build environment Sun, 25 Oct 2026 01:06:08 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.113+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.113-1 (2026-10-15) amd64 (x86_64) Toolchain package versions: binutils_2.47.50.20261021-1 dpkg-dev_1.23.11 g++-16_16.2.0-3 gcc-16_16.2.0-3 libc6-dev_2.43-7 libstdc++-16-dev_16.2.0-3 libstdc++6_16.2.0-3 linux-libc-dev_7.2.11-1 Package versions: autoconf_2.73-2 automake_1:1.19-3 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-4 bc_1.07.1-4 binutils_2.47.50.20261021-1 binutils-common_2.47.50.20261021-1 binutils-x86-64-linux-gnu_2.47.50.20261021-1 bsdextrautils_2.42.4-1 build-essential_12.12 bzip2_1.0.8-6+b2 comerr-dev_2.1-1.47.4-1+b2 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-3 cpp-16-x86-64-linux-gnu_16.2.0-3 cpp-x86-64-linux-gnu_4:16.1.0-3 dash_0.5.12-12 debconf_1.5.92 debhelper_14.5 debianutils_5.24 dh-autoreconf_23 dh-python_7.20261019 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-3 fontconfig_2.17.1-5 fontconfig-config_2.17.1-5 fonts-dejavu-core_2.37-9 fonts-dejavu-mono_2.37-9 g++_4:16.1.0-3 g++-16_16.2.0-3 g++-16-x86-64-linux-gnu_16.2.0-3 g++-x86-64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-3 gcc-16-base_16.2.0-3 gcc-16-x86-64-linux-gnu_16.2.0-3 gcc-x86-64-linux-gnu_4:16.1.0-3 gettext_1.0-5 gettext-base_1.0-5 gfortran_4:16.1.0-3 gfortran-16_16.2.0-3 gfortran-16-x86-64-linux-gnu_16.2.0-3 gfortran-x86-64-linux-gnu_4:16.1.0-3 grep_3.12-1 groff-base_1.24.2-2 gzip_1.14-1 hdf5-helpers_2.2.0+repack-5 hicolor-icon-theme_0.18-2 hostname_3.25 ibverbs-providers_65.0-1.1 imagemagick_8:7.1.2.33+dfsg1-1 imagemagick-7-common_8:7.1.2.33+dfsg1-1 imagemagick-7.q16_8:7.1.2.33+dfsg1-1 init-system-helpers_1.69+nmu3 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.22.1-3 libacl1_2.4.0-1 libaec-dev_1.1.7-1 libaec0_1.1.7-1 libamd-comgr3_7.0.2+dfsg-3 libamd3_1:7.14.1+dfsg-1 libamdhip64-6_6.4.3-5 libarchive-zip-perl_1.68-1 libarpack2t64_3.9.1-6+b2 libasan8_16.2.0-3 libasound2-data_1.2.16.1-2 libasound2t64_1.2.16.1-2 libatomic1_16.2.0-3 libattr1_1:2.6.0-1 libaudit-common_1:4.2.1-1 libaudit1_1:4.2.1-1 libavahi-client3_0.8-18 libavahi-common-data_0.8-18 libavahi-common3_0.8-18 libb2-1_0.98.1-1.1+b3 libbinutils_2.47.50.20261021-1 libblas-dev_3.12.1-8 libblas3_3.12.1-8 libblkid1_2.42.4-1 libbrotli-dev_1.2.0-4+b1 libbrotli1_1.2.0-4+b1 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qt5-qmake_5.15.19+dfsg-5 qt5-qmake-bin_5.15.19+dfsg-5 qtbase5-dev_5.15.19+dfsg-5 qtbase5-dev-tools_5.15.19+dfsg-5 qtchooser_66-2 readline-common_8.3-4 sed_4.9-3 sensible-utils_0.0.26 shared-mime-info_2.4-5+b3 systemd_262.1-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-6 tex-common_6.21 texinfo_7.3-2 texinfo-lib_7.3-2+b1 tzdata_2026e-1 ucf_3.0056 util-linux_2.42.4-1 x11-common_1:7.7+26 x11proto-dev_2025.1-1 xkb-data_2.48-1 xorg-sgml-doctools_1:1.12.1-1 xtrans-dev_1.6.0-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Sun, 25 Oct 2026 01:06:08 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mrtrix3 Binary: mrtrix3, mrtrix3-doc Architecture: any-amd64 arm64 all Version: 3.0.8-4 Maintainer: Debian Med Packaging Team Uploaders: Michael Hanke , Yaroslav Halchenko , Étienne Mollier Homepage: https://www.mrtrix.org Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/mrtrix3 Vcs-Git: https://salsa.debian.org/med-team/mrtrix3.git Build-Depends: debhelper-compat (= 14), bc, dh-python, imagemagick, libeigen3-dev, libgsl-dev, libqt5opengl5-dev, libqt5svg5-dev, libtiff-dev, matlab-support-dev, octave-dev, pkgconf, python3, qtbase5-dev Build-Conflicts: clang Package-List: mrtrix3 deb science optional arch=any-amd64,arm64 mrtrix3-doc deb doc optional arch=all Checksums-Sha1: 3d12cda10cacf20ac6905ed544e910d82d36af69 4057854 mrtrix3_3.0.8.orig.tar.gz d81c5203634e358e18746596658b53ab9f54b54a 12084 mrtrix3_3.0.8-4.debian.tar.xz Checksums-Sha256: 7ca0ec513fe32421f453b8bdc5a7355a4563fd0247eea92fd5998ebd81a988aa 4057854 mrtrix3_3.0.8.orig.tar.gz a73f0cca1736f33588e7f51d46ee8fc3cc4b3651afffc06f711167e4d66c6c87 12084 mrtrix3_3.0.8-4.debian.tar.xz Files: 9485a0aa0f771b1aab64630597a2691f 4057854 mrtrix3_3.0.8.orig.tar.gz 20d25829425cf796a4e10ae4e231c0da 12084 mrtrix3_3.0.8-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEE1Uw7+v+wQt44LaXXQc5/C58bizIFAmrZSUQACgkQQc5/C58b izLnhwf+NKUxALAHRz96Gwbu5tF30R21dnoYybkS3rJAHVcKYVVkdNrGX1Y6K9eI 45Mo9fby8lQv36Lhg1rQPTZe8ZfCjle0sdUEy10Zogc11mgYNLGhDIJIpj2o4xZU d1zZpd5hYX5BZEG9S4DxF8FXQS5t7glD72KcH2Q9fX7G/c201q0mT/SzS8XDeeHd 8jVl4U8i8gVXlrKjNkTInECe2SQQUD6T5n5VPqm0hz2KatFCzbd4kU0AMpM6Hk+2 ZHpzgo9uUHEhxqroBF/7vs9g4vsKeivh1VvchtA+QsLih9VH65i1Tg/YUtvRlTms J2d70HrVRcyay8SzdndEyX7ZOa0RZQ== =huLV -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./mrtrix3_3.0.8-4.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./mrtrix3_3.0.8-4.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting mrtrix3 in /build/reproducible-path/mrtrix3-3.0.8 dpkg-source: info: unpacking mrtrix3_3.0.8.orig.tar.gz dpkg-source: info: unpacking mrtrix3_3.0.8-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian_build_cfg dpkg-source: info: applying python3.patch dpkg-source: info: applying mrtrix_version.patch dpkg-source: info: applying libeigen5.0.patch dpkg-source: info: applying eigen-jacobisvd-signature.patch dpkg-source: info: applying eigen5-openmp.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1792624800 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package mrtrix3 dpkg-buildpackage: info: source version 3.0.8-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Santiago Vila dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.8' [ -f config ] && python3 ./build clean || true find . -name '*.pyc' -delete rm -f clean \ config configure.log build.log \ core/version.cpp lib/mrtrix3/_version.py src/exec_version.cpp \ icons/mrview.qrc icons/shview.qrc dh_clean make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.8' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.8' ./configure -openmp # -debug MRtrix build type requested: release version with openmp Detecting OS: linux Looking for compiler [clang++]: not found Looking for compiler [g++]: g++ (Debian 16.2.0-3) 16.2.0 Checking for C++14 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.5.0 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.3.2 Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.7.2 Checking for PNG library: not found - PNG support disabled Checking for FFTW library: fftw-3.3.11-sse2-avx Checking for OpenMP support: ok Checking for Qt moc: moc (version 5.15.19) Checking for Qt qmake: qmake (version 5.15.19) Checking for Qt rcc: rcc (version 5.15.19) Checking for Qt: 5.15.19 writing configuration to file './config': ok make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.8' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.8' ./build -verbose active config is default reading configuration from "config"... /build/reproducible-path/mrtrix3-3.0.8/./build:549: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (config_file, mode='r', encoding='utf-8') as f: is_likely_text: bin/5ttgen: starts with shebang is_likely_text: bin/blend: starts with shebang is_likely_text: bin/convert_bruker: starts with shebang is_likely_text: bin/dwi2response: starts with shebang is_likely_text: bin/dwibiascorrect: starts with shebang is_likely_text: bin/dwicat: starts with shebang is_likely_text: bin/dwifslpreproc: starts with shebang is_likely_text: bin/dwigradcheck: starts with shebang is_likely_text: bin/dwinormalise: starts with shebang is_likely_text: bin/dwishellmath: starts with shebang is_likely_text: bin/for_each: starts with shebang is_likely_text: bin/gen_scheme: starts with shebang is_likely_text: bin/labelsgmfix: starts with shebang is_likely_text: bin/mrtrix3.py: utf-8 encoded is_likely_text: bin/mrtrix_cleanup: starts with shebang is_likely_text: bin/notfound: starts with shebang is_likely_text: bin/population_template: starts with shebang is_likely_text: bin/responsemean: starts with shebang getting MRtrix version from folder "."... fetching version information from "MRTRIX_BASE_VERSION" in "./core/version.h": 3.0.8 Using MRtrix version "3.0.8" version file "./core/version.cpp" is out of date - updating version file "./src/exec_version.cpp" is out of date - updating compiling TODO list... /build/reproducible-path/mrtrix3-3.0.8/./build:1032: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (current_file, mode='r', encoding='utf-8') as fd: /build/reproducible-path/mrtrix3-3.0.8/./build:866: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (modify_path (self.name, strip=cpp_suffix, add=h_suffix), mode='r', encoding='utf-8') as fd: building targets: bin/connectome2tck bin/tensor2metric bin/tck2connectome bin/dwi2fod bin/mrdegibbs bin/mrmath bin/fod2dec bin/dirstat bin/mrstats bin/5ttedit bin/fixel2voxel bin/mrview bin/mrinfo bin/sh2power bin/5tt2gmwmi bin/peaks2amp bin/mrthreshold bin/dcmedit bin/tsfvalidate bin/tcksift bin/afdconnectivity bin/shview bin/peaks2fixel bin/fixelconvert bin/tsfdivide bin/tckmap bin/mrhistogram bin/tckdfc bin/transformconvert bin/mrcolour bin/shbasis bin/maskdump bin/warpinit bin/mraverageheader bin/tsfthreshold bin/dirsplit bin/connectomeedit bin/dwi2mask bin/meshconvert bin/tckedit bin/transformcalc bin/fixelfilter bin/fixelconnectivity bin/labelconvert bin/sh2amp bin/tckglobal bin/tsfmult bin/fixelcrop bin/tcksift2 bin/fixelcfestats bin/amp2sh bin/dwiextract bin/tckstats bin/mrhistmatch bin/tcktransform bin/dirgen bin/labelstats bin/sh2peaks bin/5ttcheck bin/mrfilter bin/tsfsmooth bin/mrtransform bin/warpinvert bin/fixelreorient bin/label2mesh bin/mrcheckerboardmask bin/dwidenoise bin/fixel2sh bin/fixelcorrespondence bin/5tt2vis bin/tcksample bin/tckgen bin/fixel2tsf bin/warp2metric bin/mrcalc bin/meshfilter bin/mrclusterstats bin/vectorstats bin/tck2fixel bin/mrmetric bin/fod2fixel bin/fixel2peaks bin/dwi2tensor bin/warpconvert bin/tckresample bin/connectomestats bin/dcminfo bin/warpcorrect bin/tckinfo bin/mrdump bin/voxel2fixel bin/shconv bin/mrgrid bin/maskfilter bin/mredit bin/label2colour bin/dirmerge bin/mtnormalise bin/mrcentroid bin/tsfinfo bin/tckconvert bin/dwi2adc bin/mrconvert bin/dirorder bin/mrregister bin/voxel2mesh bin/amp2response bin/transformcompose bin/dirflip bin/mesh2voxel bin/mrcat bin/sh2response TODO list contains 548 items Build will use 6 threads ( 1/548) [CC] tmp/src/dwi/tractography/weights.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/weights.cpp -o tmp/src/dwi/tractography/weights.o ( 4/548) [CC] tmp/src/dwi/tractography/connectome/exemplar.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/exemplar.cpp -o tmp/src/dwi/tractography/connectome/exemplar.o ( 5/548) [CC] tmp/src/dwi/tractography/connectome/connectome.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/connectome.cpp -o tmp/src/dwi/tractography/connectome/connectome.o ( 2/548) [CC] tmp/src/dwi/tractography/file_base.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/file_base.cpp -o tmp/src/dwi/tractography/file_base.o ( 3/548) [CC] tmp/src/dwi/tractography/connectome/extract.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o ( 6/548) [CC] tmp/cmd/connectome2tck.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o ( 7/548) [CC] tmp/src/dwi/tractography/seeding/list.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/list.cpp -o tmp/src/dwi/tractography/seeding/list.o ( 8/548) [CC] tmp/src/exec_version.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/exec_version.cpp -o tmp/src/exec_version.o ( 9/548) [CC] tmp/core/stats.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/stats.cpp -o tmp/core/stats.o ( 10/548) [CC] tmp/core/file/dicom/image.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/image.cpp -o tmp/core/file/dicom/image.o ( 11/548) [CC] tmp/core/image_io/variable_scaling.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/variable_scaling.cpp -o tmp/core/image_io/variable_scaling.o ( 12/548) [CC] tmp/core/formats/list.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/list.cpp -o tmp/core/formats/list.o ( 13/548) [CC] tmp/core/math/erfinv.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/erfinv.cpp -o tmp/core/math/erfinv.o ( 14/548) [CC] tmp/core/image_io/sparse.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/sparse.cpp -o tmp/core/image_io/sparse.o ( 15/548) [CC] tmp/core/image_io/gz.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/gz.cpp -o tmp/core/image_io/gz.o ( 16/548) [CC] tmp/core/dwi/shells.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/dwi/shells.cpp -o tmp/core/dwi/shells.o ( 17/548) [CC] tmp/core/formats/pipe.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/pipe.cpp -o tmp/core/formats/pipe.o ( 18/548) [CC] 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core/version.cpp -o tmp/core/version.o: core/version.cpp:5:30: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 5 | const char* build_date = __DATE__; | ^~~~~~~~ ( 66/548) [CC] tmp/core/formats/mgz.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mgz.cpp -o tmp/core/formats/mgz.o ( 67/548) [CC] tmp/core/misc/bitset.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx 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-DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/config.cpp -o tmp/core/file/config.o ( 69/548) [CC] tmp/core/math/betainc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/betainc.cpp -o tmp/core/math/betainc.o ( 70/548) [CC] tmp/core/math/stats/shuffle.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/stats/shuffle.cpp -o tmp/core/math/stats/shuffle.o ( 71/548) [CC] tmp/core/image_io/ram.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/ram.cpp -o tmp/core/image_io/ram.o ( 72/548) [CC] tmp/core/metadata/phase_encoding.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/metadata/phase_encoding.cpp -o tmp/core/metadata/phase_encoding.o ( 73/548) [CC] tmp/core/signal_handler.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/signal_handler.cpp -o tmp/core/signal_handler.o ( 74/548) [CC] tmp/core/file/json_utils.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/json_utils.cpp -o tmp/core/file/json_utils.o ( 75/548) [CC] tmp/core/formats/mrtrix_gz.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix_gz.cpp -o tmp/core/formats/mrtrix_gz.o ( 76/548) [CC] tmp/core/file/key_value.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/key_value.cpp -o tmp/core/file/key_value.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/stats/shuffle.cpp -o tmp/core/math/stats/shuffle.o: core/math/stats/shuffle.cpp: In member function ‘void MR::Math::Stats::Shuffler::generate_random_permutations(size_t, size_t, const MR::Math::Stats::index_array_type&, const MR::Math::Stats::index_array_type&, bool, bool)’: core/math/stats/shuffle.cpp:465:35: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 465 | std::random_shuffle (permuted_labelling.begin(), permuted_labelling.end()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/algorithm:63, from ./core/mrtrix.h:27, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/stats/shuffle.h:21, from core/math/stats/shuffle.cpp:18: /usr/include/c++/16/bits/stl_algo.h:4511:5: note: declared here 4511 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ core/math/stats/shuffle.cpp:484:37: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 484 | std::random_shuffle (permuted_block.begin(), permuted_block.end()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_algo.h:4511:5: note: declared here 4511 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ core/math/stats/shuffle.cpp:508:33: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 508 | std::random_shuffle (permuted_blocks.begin(), permuted_blocks.end()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_algo.h:4511:5: note: declared here 4511 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ ( 77/548) [CC] tmp/core/image_io/png.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 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-I./core -Icmd -isystem /usr/include/eigen3 core/progressbar.cpp -o tmp/core/progressbar.o ( 85/548) [CC] tmp/core/exception.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/exception.cpp -o tmp/core/exception.o ( 86/548) [CC] tmp/core/math/average_space.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/average_space.cpp -o tmp/core/math/average_space.o ( 87/548) [CC] tmp/core/dwi/gradient.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/dwi/gradient.cpp -o tmp/core/dwi/gradient.o ( 88/548) [CC] tmp/core/image_io/fetch_store.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/fetch_store.cpp -o tmp/core/image_io/fetch_store.o ( 89/548) [CC] tmp/core/formats/mgh.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mgh.cpp -o tmp/core/formats/mgh.o ( 90/548) [CC] tmp/core/math/stats/fwe.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/stats/fwe.cpp -o tmp/core/math/stats/fwe.o ( 91/548) [CC] tmp/core/formats/nifti1_gz.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti1_gz.cpp -o tmp/core/formats/nifti1_gz.o ( 92/548) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/tck2nodes.cpp -o tmp/src/dwi/tractography/connectome/tck2nodes.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/json_utils.cpp -o tmp/core/file/json_utils.o: In file included from /usr/include/c++/16/bits/exception_ptr.h:41, from /usr/include/c++/16/exception:182, from /usr/include/c++/16/ios:43, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from core/file/json_utils.cpp:17: In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12715:36: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ In file included from ./core/file/json_utils.h:20, from core/file/json_utils.cpp:20: ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12715:38: note: ‘’ declared here 12715 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12768:32: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12768:34: note: ‘’ declared here 12768 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12792:36: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12792:38: note: ‘’ declared here 12792 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12822:32: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12822:34: note: ‘’ declared here 12822 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12897:24: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12897:26: note: ‘’ declared here 12897 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ( 93/548) [CC] tmp/src/dwi/tractography/rng.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/rng.cpp -o tmp/src/dwi/tractography/rng.o ( 94/548) [CC] tmp/src/dwi/tractography/roi.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/roi.cpp -o tmp/src/dwi/tractography/roi.o ( 95/548) [CC] tmp/src/dwi/tractography/properties.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/properties.cpp -o tmp/src/dwi/tractography/properties.o ( 96/548) [CC] tmp/src/connectome/connectome.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/connectome.cpp -o tmp/src/connectome/connectome.o ( 97/548) [CC] tmp/cmd/tensor2metric.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tensor2metric.cpp -o tmp/cmd/tensor2metric.o ( 98/548) [CC] tmp/src/dwi/tractography/connectome/matrix.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/matrix.cpp -o tmp/src/dwi/tractography/connectome/matrix.o ( 99/548) [CC] tmp/cmd/tck2connectome.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o (100/548) [CC] tmp/src/dwi/sdeconv/csd.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o (101/548) [CC] tmp/src/dwi/sdeconv/msmt_csd.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/sdeconv/msmt_csd.cpp -o tmp/src/dwi/sdeconv/msmt_csd.o (102/548) [CC] tmp/cmd/dwi2fod.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2fod.cpp -o tmp/cmd/dwi2fod.o (103/548) [CC] tmp/src/dwi/directions/predefined.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/predefined.cpp -o tmp/src/dwi/directions/predefined.o (104/548) [CC] tmp/cmd/mrdegibbs.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o (105/548) [CC] tmp/cmd/mrmath.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmath.cpp -o tmp/cmd/mrmath.o (106/548) [CC] tmp/cmd/fod2dec.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o (107/548) [CC] tmp/cmd/dirstat.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirstat.cpp -o tmp/cmd/dirstat.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/stats/glm.cpp -o tmp/core/math/stats/glm.o: core/math/stats/glm.cpp: In function ‘MR::Math::Stats::matrix_type MR::Math::Stats::GLM::solve_betas(const MR::Math::Stats::matrix_type&, const MR::Math::Stats::matrix_type&)’: core/math/stats/glm.cpp:185:35: warning: ‘Eigen::JacobiSVD::PlainObject, Options> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with int Options = 0; Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ is deprecated: Options should be specified using method's template parameter. [-Wdeprecated-declarations] 185 | return design.jacobiSvd (Eigen::ComputeThinU | Eigen::ComputeThinV).solve (measurements); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/SVD:39, from /usr/include/eigen3/Eigen/Geometry:13, from ./core/types.h:78, from ./core/mrtrix.h:38, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/stats/glm.h:20, from core/math/stats/glm.cpp:17: /usr/include/eigen3/Eigen/src/SVD/JacobiSVD.h:839:63: note: declared here 839 | JacobiSVD::PlainObject, Options> MatrixBase::jacobiSvd( | ^~~~~~~~~~~~~~~~~~~ (108/548) [CC] tmp/src/dwi/directions/file.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o (109/548) [CC] tmp/cmd/mrstats.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrstats.cpp -o tmp/cmd/mrstats.o (110/548) [CC] tmp/src/dwi/tractography/ACT/act.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/ACT/act.cpp -o tmp/src/dwi/tractography/ACT/act.o (111/548) [CC] tmp/cmd/5ttedit.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttedit.cpp -o tmp/cmd/5ttedit.o (112/548) [CC] tmp/cmd/fixel2voxel.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2voxel.cpp -o tmp/cmd/fixel2voxel.o (113/548) [CC] tmp/src/gui/dialog/dicom.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/dicom.cpp -o tmp/src/gui/dialog/dicom.o (114/548) [CC] tmp/src/gui/opengl/lighting.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/lighting.cpp -o tmp/src/gui/opengl/lighting.o (115/548) [CC] tmp/src/gui/mrview/tool/odf/odf.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o (116/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o (117/548) [CC] tmp/src/gui/shapes/halfsphere.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/halfsphere.cpp -o tmp/src/gui/shapes/halfsphere.o (118/548) [LD] lib/libmrtrix.so g++ tmp/core/stats.o tmp/core/file/dicom/image.o tmp/core/image_io/variable_scaling.o tmp/core/formats/list.o tmp/core/math/erfinv.o tmp/core/image_io/sparse.o tmp/core/image_io/gz.o tmp/core/dwi/shells.o tmp/core/formats/pipe.o tmp/core/metadata/slice_encoding.o tmp/core/file/png.o tmp/core/formats/nifti2.o tmp/core/formats/mrtrix_utils.o tmp/core/formats/mrtrix_sparse_legacy.o tmp/core/image_io/null.o tmp/core/file/dicom/mapper.o tmp/core/file/ofstream.o tmp/core/formats/mri.o tmp/core/formats/nifti1.o tmp/core/file/dicom/quick_scan.o tmp/core/image_io/tiff.o tmp/core/axes.o tmp/core/thread.o tmp/core/filter/connected_components.o tmp/core/formats/mrtrix.o tmp/core/math/zstatistic.o tmp/core/formats/nifti2_gz.o tmp/core/metadata/bids.o tmp/core/image_io/mosaic.o tmp/core/header.o tmp/core/formats/xds.o tmp/core/stride.o tmp/core/image_io/scratch.o tmp/core/app.o tmp/core/file/tiff.o tmp/core/file/name_parser.o tmp/core/file/dicom/patient.o tmp/core/algo/histogram.o tmp/core/file/nifti_utils.o tmp/core/math/bessel.o tmp/core/file/dicom/element.o tmp/core/formats/tiff.o tmp/core/mrtrix.o tmp/core/file/dicom/study.o tmp/core/file/mmap.o tmp/core/datatype.o tmp/core/formats/dicom.o tmp/core/math/stats/glm.o tmp/core/image_io/default.o tmp/core/file/dicom/series.o tmp/core/file/dicom/dict.o tmp/core/math/stats/import.o tmp/core/formats/par.o tmp/core/file/dicom/select_cmdline.o tmp/core/file/dicom/tree.o tmp/core/image_io/base.o tmp/core/version.o tmp/core/formats/mgz.o tmp/core/misc/bitset.o tmp/core/file/config.o tmp/core/math/betainc.o tmp/core/math/stats/shuffle.o tmp/core/image_io/ram.o tmp/core/metadata/phase_encoding.o tmp/core/signal_handler.o tmp/core/file/json_utils.o tmp/core/formats/mrtrix_gz.o tmp/core/file/key_value.o tmp/core/image_io/png.o tmp/core/adapter/reslice.o tmp/core/file/mgh.o tmp/core/formats/png.o tmp/core/math/SH.o tmp/core/image_io/pipe.o tmp/core/formats/ram.o tmp/core/progressbar.o tmp/core/exception.o tmp/core/math/average_space.o tmp/core/dwi/gradient.o tmp/core/image_io/fetch_store.o tmp/core/formats/mgh.o tmp/core/math/stats/fwe.o tmp/core/formats/nifti1_gz.o -shared -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -o lib/libmrtrix.so (119/548) [CC] tmp/src/gui/shapes/sphere.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/sphere.cpp -o tmp/src/gui/shapes/sphere.o (120/548) [LB] bin/connectome2tck g++ tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/connectome/exemplar.o tmp/src/dwi/tractography/connectome/extract.o tmp/src/dwi/tractography/file_base.o tmp/cmd/connectome2tck.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/connectome/connectome.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectome2tck (121/548) [LB] bin/tensor2metric g++ tmp/src/exec_version.o tmp/cmd/tensor2metric.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tensor2metric (122/548) [LB] bin/tck2connectome g++ tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/connectome/matrix.o tmp/src/dwi/tractography/connectome/connectome.o tmp/cmd/tck2connectome.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/connectome/connectome.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2connectome (123/548) [LB] bin/dwi2fod g++ tmp/src/exec_version.o tmp/src/dwi/sdeconv/csd.o tmp/src/dwi/sdeconv/msmt_csd.o tmp/cmd/dwi2fod.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2fod (124/548) [LB] bin/mrdegibbs g++ tmp/src/exec_version.o tmp/cmd/mrdegibbs.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdegibbs (125/548) [LB] bin/fod2dec g++ tmp/src/exec_version.o tmp/cmd/fod2dec.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2dec (126/548) [LB] bin/dirstat g++ tmp/src/exec_version.o tmp/cmd/dirstat.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirstat (127/548) [LB] bin/mrstats g++ tmp/src/exec_version.o tmp/cmd/mrstats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrstats (128/548) [LB] bin/5ttedit g++ tmp/src/dwi/tractography/ACT/act.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/rng.o tmp/cmd/5ttedit.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttedit (129/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/roi.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi.o (130/548) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/legacy.cpp -o tmp/src/gui/mrview/tool/fixel/legacy.o (131/548) [LB] bin/fixel2voxel g++ tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/cmd/fixel2voxel.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2voxel (132/548) [CC] tmp/src/gui/mrview/colourbars.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourbars.cpp -o tmp/src/gui/mrview/colourbars.o (133/548) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp moc src/gui/mrview/tool/tractography/track_scalar_file.h -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp (134/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o (135/548) [CC] tmp/src/gui/mrview/tool/odf/model.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/model.cpp -o tmp/src/gui/mrview/tool/odf/model.o (136/548) [CC] tmp/src/gui/mrview/mode/volume.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o (137/548) [MOC] tmp/src/gui/color_button_moc.cpp moc src/gui/color_button.h -o tmp/src/gui/color_button_moc.cpp (138/548) [CC] tmp/src/gui/color_button_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/color_button_moc.cpp -o tmp/src/gui/color_button_moc.o (139/548) [CC] tmp/src/gui/mrview/mode/ortho.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/ortho.cpp -o tmp/src/gui/mrview/mode/ortho.o (140/548) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/image4D.cpp -o tmp/src/gui/mrview/tool/fixel/image4D.o (141/548) [CC] tmp/src/gui/color_button.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/color_button.cpp -o tmp/src/gui/color_button.o (142/548) [CC] tmp/src/gui/mrview/colourmap_button.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourmap_button.cpp -o tmp/src/gui/mrview/colourmap_button.o (143/548) [CC] tmp/src/gui/mrview/file_open.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/file_open.cpp -o tmp/src/gui/mrview/file_open.o (144/548) [CC] tmp/src/gui/mrview/tool/fixel/directory.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o (145/548) [CC] tmp/src/gui/dialog/image_properties.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/image_properties.cpp -o tmp/src/gui/dialog/image_properties.o (146/548) [CC] tmp/src/gui/mrview/tool/base.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o (147/548) [LB] bin/mrmath g++ tmp/src/exec_version.o tmp/cmd/mrmath.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmath (148/548) [MOC] tmp/src/gui/opengl/lighting_moc.cpp moc src/gui/opengl/lighting.h -o tmp/src/gui/opengl/lighting_moc.cpp (149/548) [CC] tmp/src/gui/opengl/lighting_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/opengl/lighting_moc.cpp -o tmp/src/gui/opengl/lighting_moc.o (150/548) [CC] tmp/src/gui/dialog/report_exception.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/report_exception.cpp -o tmp/src/gui/dialog/report_exception.o (151/548) [MOC] tmp/src/gui/mrview/tool/transform_moc.cpp moc src/gui/mrview/tool/transform.h -o tmp/src/gui/mrview/tool/transform_moc.cpp (152/548) [CC] tmp/src/gui/mrview/tool/transform_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/transform_moc.cpp -o tmp/src/gui/mrview/tool/transform_moc.o (153/548) [CC] tmp/src/gui/mrview/window.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o (154/548) [CC] tmp/src/gui/mrview/tool/transform.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/transform.cpp -o tmp/src/gui/mrview/tool/transform.o (155/548) [CC] tmp/src/gui/gui.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/gui.cpp -o tmp/src/gui/gui.o (156/548) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/undoentry.cpp -o tmp/src/gui/mrview/tool/roi_editor/undoentry.o (157/548) [CC] tmp/src/gui/mrview/gui_image.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/gui_image.cpp -o tmp/src/gui/mrview/gui_image.o (158/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o (159/548) [CC] tmp/src/gui/opengl/gl.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/gl.cpp -o tmp/src/gui/opengl/gl.o (160/548) [CC] tmp/src/gui/mrview/sync/processlock.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/processlock.cpp -o tmp/src/gui/mrview/sync/processlock.o (161/548) [CC] tmp/src/gui/dialog/progress.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/progress.cpp -o tmp/src/gui/dialog/progress.o (162/548) [MOC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp moc src/gui/mrview/sync/interprocesscommunicator.h -o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp (163/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp -o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o (164/548) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp moc src/gui/mrview/colourmap_button.h -o tmp/src/gui/mrview/colourmap_button_moc.cpp (165/548) [CC] tmp/src/gui/mrview/colourmap_button_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/colourmap_button_moc.cpp -o tmp/src/gui/mrview/colourmap_button_moc.o (166/548) [CC] tmp/src/gui/dialog/dialog.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/dialog.cpp -o tmp/src/gui/dialog/dialog.o (167/548) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp moc src/gui/mrview/adjust_button.h -o tmp/src/gui/mrview/adjust_button_moc.cpp (168/548) [CC] tmp/src/gui/mrview/adjust_button_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/adjust_button_moc.cpp -o tmp/src/gui/mrview/adjust_button_moc.o (169/548) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp moc src/gui/mrview/combo_box_error.h -o tmp/src/gui/mrview/combo_box_error_moc.cpp (170/548) [CC] tmp/src/gui/mrview/combo_box_error_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/combo_box_error_moc.cpp -o tmp/src/gui/mrview/combo_box_error_moc.o (171/548) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp moc src/gui/mrview/mode/ortho.h -o tmp/src/gui/mrview/mode/ortho_moc.cpp (172/548) [CC] tmp/src/gui/mrview/mode/ortho_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/ortho_moc.cpp -o tmp/src/gui/mrview/mode/ortho_moc.o (173/548) [CC] tmp/src/gui/mrview/tool/view.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/view.cpp -o tmp/src/gui/mrview/tool/view.o (174/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp moc src/gui/mrview/tool/tractography/tractogram.h -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp (175/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o (176/548) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp moc src/gui/mrview/mode/lightbox.h -o tmp/src/gui/mrview/mode/lightbox_moc.cpp (177/548) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/lightbox_moc.cpp -o tmp/src/gui/mrview/mode/lightbox_moc.o (178/548) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp moc src/gui/mrview/tool/odf/preview.h -o tmp/src/gui/mrview/tool/odf/preview_moc.cpp (179/548) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/preview_moc.cpp -o tmp/src/gui/mrview/tool/odf/preview_moc.o (180/548) [CC] tmp/src/gui/mrview/tool/connectome/selection.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/selection.cpp -o tmp/src/gui/mrview/tool/connectome/selection.o (181/548) [CC] tmp/src/gui/shapes/cube.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/cube.cpp -o tmp/src/gui/shapes/cube.o (182/548) [CC] tmp/src/gui/mrview/tool/overlay.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o (183/548) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp moc src/gui/mrview/tool/overlay.h -o tmp/src/gui/mrview/tool/overlay_moc.cpp (184/548) [CC] tmp/src/gui/mrview/tool/overlay_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/overlay_moc.cpp -o tmp/src/gui/mrview/tool/overlay_moc.o (185/548) [CC] tmp/src/gui/dwi/render_frame.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/render_frame.cpp -o tmp/src/gui/dwi/render_frame.o (186/548) [CC] tmp/src/gui/mrview/tool/connectome/edge.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/edge.cpp -o tmp/src/gui/mrview/tool/connectome/edge.o (187/548) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp moc src/gui/mrview/tool/screen_capture.h -o tmp/src/gui/mrview/tool/screen_capture_moc.cpp (188/548) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o (189/548) [CC] tmp/src/gui/opengl/gl_core_3_3.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/gl_core_3_3.cpp -o tmp/src/gui/opengl/gl_core_3_3.o (190/548) [CC] tmp/src/gui/mrview/tool/screen_capture.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o (191/548) [CC] tmp/src/dwi/directions/set.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/set.cpp -o tmp/src/dwi/directions/set.o (192/548) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp moc src/gui/mrview/tool/view.h -o tmp/src/gui/mrview/tool/view_moc.cpp (193/548) [CC] tmp/src/gui/mrview/tool/view_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/view_moc.cpp -o tmp/src/gui/mrview/tool/view_moc.o (194/548) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp moc src/gui/mrview/tool/fixel/fixel.h -o tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (195/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -o tmp/src/gui/mrview/tool/fixel/fixel_moc.o (196/548) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp moc src/gui/mrview/tool/connectome/connectome.h -o tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp (197/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp -o tmp/src/gui/mrview/tool/connectome/connectome_moc.o (198/548) [CC] tmp/src/gui/cursor.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/cursor.cpp -o tmp/src/gui/cursor.o (199/548) [CC] tmp/src/gui/mrview/combo_box_error.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/combo_box_error.cpp -o tmp/src/gui/mrview/combo_box_error.o (200/548) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o (201/548) [CC] tmp/src/gui/crosshair.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/crosshair.cpp -o tmp/src/gui/crosshair.o (202/548) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/file_data_vector.cpp -o tmp/src/gui/mrview/tool/connectome/file_data_vector.o (203/548) [CC] tmp/src/gui/dialog/opengl.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/opengl.cpp -o tmp/src/gui/dialog/opengl.o (204/548) [CC] tmp/src/gui/mrview/tool/odf/preview.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/preview.cpp -o tmp/src/gui/mrview/tool/odf/preview.o (205/548) [CC] tmp/src/gui/mrview/mode/slice.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/slice.cpp -o tmp/src/gui/mrview/mode/slice.o (206/548) [CC] tmp/src/gui/mrview/sync/syncmanager.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/syncmanager.cpp -o tmp/src/gui/mrview/sync/syncmanager.o (207/548) [CC] tmp/src/gui/mrview/displayable.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o (208/548) [CC] tmp/src/gui/mrview/tool/connectome/node.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node.cpp -o tmp/src/gui/mrview/tool/connectome/node.o (209/548) [CC] tmp/src/gui/opengl/font.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/font.cpp -o tmp/src/gui/opengl/font.o (210/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/track_scalar_file.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o (211/548) [CC] tmp/src/connectome/lut.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/lut.cpp -o tmp/src/connectome/lut.o (212/548) [CC] tmp/src/gui/opengl/shader.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/shader.cpp -o tmp/src/gui/opengl/shader.o (213/548) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/colourmap_observers.cpp -o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o (214/548) [MOC] tmp/src/gui/mrview/sync/localsocketreader_moc.cpp moc src/gui/mrview/sync/localsocketreader.h -o tmp/src/gui/mrview/sync/localsocketreader_moc.cpp (215/548) [CC] tmp/src/gui/mrview/sync/localsocketreader_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/localsocketreader_moc.cpp -o tmp/src/gui/mrview/sync/localsocketreader_moc.o (216/548) [MOC] tmp/src/gui/mrview/displayable_moc.cpp moc src/gui/mrview/displayable.h -o tmp/src/gui/mrview/displayable_moc.cpp (217/548) [CC] tmp/src/gui/mrview/displayable_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/displayable_moc.cpp -o tmp/src/gui/mrview/displayable_moc.o (218/548) [CC] tmp/src/gui/mrview/adjust_button.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/adjust_button.cpp -o tmp/src/gui/mrview/adjust_button.o (219/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp moc src/gui/mrview/tool/tractography/tractography.h -o tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp (220/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractography_moc.o (221/548) [CC] tmp/src/gui/mrview/volume.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o (222/548) [CC] tmp/src/colourmap.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/colourmap.cpp -o tmp/src/colourmap.o (223/548) [CC] tmp/src/gui/mrview/mode/lightbox.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/lightbox.cpp -o tmp/src/gui/mrview/mode/lightbox.o (224/548) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp moc src/gui/mrview/tool/connectome/selection.h -o tmp/src/gui/mrview/tool/connectome/selection_moc.cpp (225/548) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/selection_moc.cpp -o tmp/src/gui/mrview/tool/connectome/selection_moc.o (226/548) [CC] tmp/src/gui/dwi/renderer.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/renderer.cpp -o tmp/src/gui/dwi/renderer.o (227/548) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp moc src/gui/mrview/spin_box.h -o tmp/src/gui/mrview/spin_box_moc.cpp (228/548) [CC] tmp/src/gui/mrview/spin_box_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/spin_box_moc.cpp -o tmp/src/gui/mrview/spin_box_moc.o (229/548) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o (230/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/interprocesscommunicator.cpp -o tmp/src/gui/mrview/sync/interprocesscommunicator.o (231/548) [CC] tmp/src/surface/polygon.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/polygon.cpp -o tmp/src/surface/polygon.o (232/548) [MOC] tmp/src/gui/mrview/sync/syncmanager_moc.cpp moc src/gui/mrview/sync/syncmanager.h -o tmp/src/gui/mrview/sync/syncmanager_moc.cpp (233/548) [CC] tmp/src/gui/mrview/sync/syncmanager_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/syncmanager_moc.cpp -o tmp/src/gui/mrview/sync/syncmanager_moc.o (234/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o (235/548) [CC] tmp/src/gui/mrview/tool/odf/item.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o (236/548) [CC] tmp/src/gui/dialog/file.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/file.cpp -o tmp/src/gui/dialog/file.o (237/548) [CC] tmp/src/gui/projection.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/projection.cpp -o tmp/src/gui/projection.o (238/548) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp moc src/gui/mrview/tool/connectome/node_list.h -o tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp (239/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp -o tmp/src/gui/mrview/tool/connectome/node_list_moc.o (240/548) [CC] tmp/src/gui/mrview/mode/base.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/base.cpp -o tmp/src/gui/mrview/mode/base.o (241/548) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o (242/548) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp moc src/gui/dialog/image_properties.h -o tmp/src/gui/dialog/image_properties_moc.cpp (243/548) [CC] tmp/src/gui/dialog/image_properties_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/dialog/image_properties_moc.cpp -o tmp/src/gui/dialog/image_properties_moc.o (244/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractogram.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram.o (245/548) [CC] tmp/src/gui/shapes/cylinder.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/cylinder.cpp -o tmp/src/gui/shapes/cylinder.o (246/548) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/model.cpp -o tmp/src/gui/mrview/tool/roi_editor/model.o (247/548) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp moc src/gui/mrview/tool/roi_editor/roi.h -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (248/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o (249/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o (250/548) [CC] tmp/cmd/mrview.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ cmd/mrview.cpp -o tmp/cmd/mrview.o (251/548) [CC] tmp/src/gui/dialog/list.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/list.cpp -o tmp/src/gui/dialog/list.o (252/548) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp moc src/gui/dwi/render_frame.h -o tmp/src/gui/dwi/render_frame_moc.cpp (253/548) [CC] tmp/src/gui/dwi/render_frame_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/dwi/render_frame_moc.cpp -o tmp/src/gui/dwi/render_frame_moc.o (254/548) [CC] tmp/src/gui/mrview/sync/client.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/client.cpp -o tmp/src/gui/mrview/sync/client.o (255/548) [CC] tmp/src/surface/mesh_multi.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o (256/548) [CC] tmp/src/gui/lighting_dock.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/lighting_dock.cpp -o tmp/src/gui/lighting_dock.o (257/548) [MOC] tmp/src/gui/lighting_dock_moc.cpp moc src/gui/lighting_dock.h -o tmp/src/gui/lighting_dock_moc.cpp (258/548) [CC] tmp/src/gui/lighting_dock_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/lighting_dock_moc.cpp -o tmp/src/gui/lighting_dock_moc.o (259/548) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/base_fixel.cpp -o tmp/src/gui/mrview/tool/fixel/base_fixel.o /build/reproducible-path/mrtrix3-3.0.8/./build:755: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (self.cmd[1], mode='w', encoding='utf-8') as fd: (260/548) [RCC] tmp/src/gui/mrview/icons.cpp rcc icons/mrview.qrc -o tmp/src/gui/mrview/icons.cpp (261/548) [CC] tmp/src/gui/mrview/icons.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/icons.cpp -o tmp/src/gui/mrview/icons.o (262/548) [CC] tmp/src/gui/mrview/sync/localsocketreader.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/localsocketreader.cpp -o tmp/src/gui/mrview/sync/localsocketreader.o (263/548) [MOC] tmp/src/gui/mrview/window_moc.cpp moc src/gui/mrview/window.h -o tmp/src/gui/mrview/window_moc.cpp (264/548) [CC] tmp/src/gui/mrview/window_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/window_moc.cpp -o tmp/src/gui/mrview/window_moc.o (265/548) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_overlay.cpp -o tmp/src/gui/mrview/tool/connectome/node_overlay.o (266/548) [CC] tmp/src/surface/scalar.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/scalar.cpp -o tmp/src/surface/scalar.o (267/548) [CC] tmp/src/surface/mesh.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o (268/548) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp moc src/gui/mrview/tool/odf/odf.h -o tmp/src/gui/mrview/tool/odf/odf_moc.cpp (269/548) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/odf_moc.cpp -o tmp/src/gui/mrview/tool/odf/odf_moc.o (270/548) [CC] tmp/src/surface/freesurfer.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o: src/surface/mesh.cpp: In member function ‘void MR::Surface::Mesh::load_vtk(const std::string&)’: src/surface/mesh.cpp:187:40: warning: unused variable ‘v_float’ [-Wunused-variable] 187 | Eigen::Matrix v_float; | ^~~~~~~ (271/548) [CC] tmp/cmd/mrinfo.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrinfo.cpp -o tmp/cmd/mrinfo.o (272/548) [CC] tmp/cmd/sh2power.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2power.cpp -o tmp/cmd/sh2power.o (273/548) [CC] tmp/cmd/5tt2gmwmi.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o (274/548) [CC] tmp/cmd/peaks2amp.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/peaks2amp.cpp -o tmp/cmd/peaks2amp.o (275/548) [CC] tmp/cmd/mrthreshold.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o (276/548) [LB] bin/mrview g++ tmp/src/gui/dialog/dicom.o tmp/src/gui/opengl/lighting.o tmp/src/gui/mrview/tool/odf/odf.o tmp/src/gui/mrview/tool/connectome/connectome.o tmp/src/gui/shapes/halfsphere.o tmp/src/gui/shapes/sphere.o tmp/src/gui/mrview/tool/roi_editor/roi.o tmp/src/gui/mrview/tool/fixel/legacy.o tmp/src/gui/mrview/colourbars.o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o tmp/src/gui/mrview/tool/odf/model.o tmp/src/gui/mrview/mode/volume.o tmp/src/gui/color_button_moc.o tmp/src/gui/mrview/mode/ortho.o tmp/src/gui/mrview/tool/fixel/image4D.o tmp/src/gui/color_button.o tmp/src/gui/mrview/colourmap_button.o tmp/src/gui/mrview/file_open.o tmp/src/gui/mrview/tool/fixel/directory.o tmp/src/gui/dialog/image_properties.o tmp/src/gui/mrview/tool/base.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/mrview/tool/transform_moc.o tmp/src/gui/mrview/window.o tmp/src/gui/mrview/tool/transform.o tmp/src/gui/gui.o tmp/src/gui/mrview/tool/roi_editor/undoentry.o tmp/src/gui/mrview/gui_image.o tmp/src/gui/mrview/tool/tractography/tractography.o tmp/src/gui/opengl/gl.o tmp/src/gui/mrview/sync/processlock.o tmp/src/gui/dialog/progress.o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o tmp/src/gui/mrview/colourmap_button_moc.o tmp/src/gui/dialog/dialog.o tmp/src/connectome/connectome.o tmp/src/gui/mrview/adjust_button_moc.o tmp/src/gui/mrview/combo_box_error_moc.o tmp/src/gui/mrview/mode/ortho_moc.o tmp/src/gui/mrview/tool/view.o tmp/src/dwi/tractography/rng.o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o tmp/src/gui/mrview/mode/lightbox_moc.o tmp/src/gui/mrview/tool/odf/preview_moc.o tmp/src/gui/mrview/tool/connectome/selection.o tmp/src/gui/shapes/cube.o tmp/src/gui/mrview/tool/overlay.o tmp/src/gui/mrview/tool/overlay_moc.o tmp/src/gui/dwi/render_frame.o tmp/src/exec_version.o tmp/src/gui/mrview/tool/connectome/edge.o tmp/src/gui/mrview/tool/screen_capture_moc.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/mrview/tool/screen_capture.o tmp/src/dwi/directions/set.o tmp/src/gui/mrview/tool/view_moc.o tmp/src/gui/mrview/tool/fixel/fixel_moc.o tmp/src/gui/mrview/tool/connectome/connectome_moc.o tmp/src/gui/cursor.o tmp/src/gui/mrview/combo_box_error.o tmp/src/gui/mrview/tool/roi_editor/item.o tmp/src/gui/crosshair.o tmp/src/dwi/tractography/seeding/list.o tmp/src/gui/mrview/tool/connectome/file_data_vector.o tmp/src/gui/dialog/opengl.o tmp/src/gui/mrview/tool/odf/preview.o tmp/src/gui/mrview/mode/slice.o tmp/src/gui/mrview/sync/syncmanager.o tmp/src/gui/mrview/displayable.o tmp/src/gui/mrview/tool/connectome/node.o tmp/src/gui/opengl/font.o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o tmp/src/connectome/lut.o tmp/src/gui/opengl/shader.o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o tmp/src/gui/mrview/sync/localsocketreader_moc.o tmp/src/gui/mrview/displayable_moc.o tmp/src/gui/mrview/adjust_button.o tmp/src/gui/mrview/tool/tractography/tractography_moc.o tmp/src/gui/mrview/volume.o tmp/src/colourmap.o tmp/src/gui/mrview/mode/lightbox.o tmp/src/dwi/tractography/roi.o tmp/src/gui/mrview/tool/connectome/selection_moc.o tmp/src/gui/dwi/renderer.o tmp/src/gui/mrview/spin_box_moc.o tmp/src/gui/mrview/tool/connectome/shaders.o tmp/src/gui/mrview/sync/interprocesscommunicator.o tmp/src/surface/polygon.o tmp/src/gui/mrview/sync/syncmanager_moc.o tmp/src/gui/mrview/tool/connectome/node_list.o tmp/src/gui/mrview/tool/odf/item.o tmp/src/dwi/directions/predefined.o tmp/src/gui/dialog/file.o tmp/src/gui/projection.o tmp/src/gui/mrview/tool/connectome/node_list_moc.o tmp/src/gui/mrview/mode/base.o tmp/src/gui/mrview/tool/connectome/matrix_list.o tmp/src/gui/dialog/image_properties_moc.o tmp/src/dwi/tractography/properties.o tmp/src/gui/mrview/tool/tractography/tractogram.o tmp/src/gui/shapes/cylinder.o tmp/src/dwi/tractography/file_base.o tmp/src/gui/mrview/tool/roi_editor/model.o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o tmp/src/gui/mrview/tool/fixel/fixel.o tmp/cmd/mrview.o tmp/src/gui/dialog/list.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/mrview/sync/client.o tmp/src/surface/mesh_multi.o tmp/src/gui/lighting_dock.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/mrview/tool/fixel/base_fixel.o tmp/src/gui/mrview/icons.o tmp/src/gui/mrview/sync/localsocketreader.o tmp/src/gui/mrview/window_moc.o tmp/src/gui/mrview/tool/connectome/node_overlay.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/gui/mrview/tool/odf/odf_moc.o tmp/src/surface/freesurfer.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib /usr/lib/x86_64-linux-gnu/libQt5OpenGL.so /usr/lib/x86_64-linux-gnu/libQt5Svg.so /usr/lib/x86_64-linux-gnu/libQt5Widgets.so /usr/lib/x86_64-linux-gnu/libQt5Gui.so /usr/lib/x86_64-linux-gnu/libQt5Network.so /usr/lib/x86_64-linux-gnu/libQt5Core.so -lGL -lpthread -o bin/mrview (277/548) [CC] tmp/cmd/dcmedit.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dcmedit.cpp -o tmp/cmd/dcmedit.o (278/548) [LB] bin/sh2power g++ tmp/cmd/sh2power.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2power (279/548) [CC] tmp/cmd/tsfvalidate.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfvalidate.cpp -o tmp/cmd/tsfvalidate.o (280/548) [LB] bin/dcmedit g++ tmp/cmd/dcmedit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcmedit (281/548) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/fixel_td_map.cpp -o tmp/src/dwi/tractography/mapping/fixel_td_map.o (282/548) [LB] bin/mrinfo g++ tmp/src/exec_version.o tmp/cmd/mrinfo.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrinfo (283/548) [LB] bin/peaks2amp g++ tmp/cmd/peaks2amp.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2amp (284/548) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/fixed_step_size.cpp -o tmp/src/dwi/tractography/resampling/fixed_step_size.o (285/548) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/track_index_range.cpp -o tmp/src/dwi/tractography/SIFT/track_index_range.o (286/548) [LB] bin/5tt2gmwmi g++ tmp/src/dwi/tractography/ACT/act.o tmp/src/exec_version.o tmp/cmd/5tt2gmwmi.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2gmwmi (287/548) [CC] tmp/src/dwi/tractography/resampling/resampling.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/resampling.cpp -o tmp/src/dwi/tractography/resampling/resampling.o (288/548) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/twi_stats.cpp -o tmp/src/dwi/tractography/mapping/twi_stats.o (289/548) [CC] tmp/cmd/tcksift.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o (290/548) [CC] tmp/src/dwi/tractography/resampling/upsampler.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/upsampler.cpp -o tmp/src/dwi/tractography/resampling/upsampler.o (291/548) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/proc_mask.cpp -o tmp/src/dwi/tractography/SIFT/proc_mask.o (292/548) [LB] bin/tsfvalidate g++ tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/cmd/tsfvalidate.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfvalidate (293/548) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/fixed_num_points.cpp -o tmp/src/dwi/tractography/resampling/fixed_num_points.o (294/548) [CC] tmp/src/dwi/fmls.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o (295/548) [CC] tmp/src/dwi/tractography/mapping/mapping.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapping.cpp -o tmp/src/dwi/tractography/mapping/mapping.o (296/548) [CC] tmp/src/dwi/tractography/resampling/endpoints.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o (297/548) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/track_contribution.cpp -o tmp/src/dwi/tractography/SIFT/track_contribution.o (298/548) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper_plugins.cpp -o tmp/src/dwi/tractography/mapping/mapper_plugins.o (299/548) [CC] tmp/src/dwi/tractography/SIFT/sift.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sift.cpp -o tmp/src/dwi/tractography/SIFT/sift.o (300/548) [CC] tmp/src/dwi/tractography/SIFT/sifter.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o (301/548) [CC] tmp/src/dwi/directions/mask.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/mask.cpp -o tmp/src/dwi/directions/mask.o (302/548) [LB] bin/mrthreshold g++ tmp/src/exec_version.o tmp/cmd/mrthreshold.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrthreshold (303/548) [CC] tmp/src/dwi/tractography/resampling/downsampler.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/downsampler.cpp -o tmp/src/dwi/tractography/resampling/downsampler.o (304/548) [CC] tmp/src/dwi/tractography/mapping/mapper.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o (305/548) [CC] tmp/src/dwi/tractography/resampling/arc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/arc.cpp -o tmp/src/dwi/tractography/resampling/arc.o (306/548) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/gradient_sort.cpp -o tmp/src/dwi/tractography/SIFT/gradient_sort.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o: In file included from src/dwi/fmls.h:23, from src/dwi/fmls.cpp:17: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = MR::DWI::FMLS::SH_coefs]’: ./core/math/SH.h:604:33: warning: ‘*AL.1424[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (307/548) [CC] tmp/src/dwi/tractography/mapping/voxel.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/voxel.cpp -o tmp/src/dwi/tractography/mapping/voxel.o (308/548) [CC] tmp/cmd/afdconnectivity.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o /build/reproducible-path/mrtrix3-3.0.8/./build:755: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (self.cmd[1], mode='w', encoding='utf-8') as fd: (309/548) [RCC] tmp/src/gui/shview/icons.cpp rcc icons/shview.qrc -o tmp/src/gui/shview/icons.cpp (310/548) [CC] tmp/src/gui/shview/icons.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/shview/icons.cpp -o tmp/src/gui/shview/icons.o (311/548) [CC] tmp/src/gui/shview/file_open.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shview/file_open.cpp -o tmp/src/gui/shview/file_open.o (312/548) [CC] tmp/src/gui/shview/render_window.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o (313/548) [MOC] tmp/src/gui/shview/render_window_moc.cpp moc src/gui/shview/render_window.h -o tmp/src/gui/shview/render_window_moc.cpp (314/548) [CC] tmp/src/gui/shview/render_window_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from src/dwi/tractography/SIFT/sifter.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ src/dwi/tractography/SIFT/sifter.cpp: In member function ‘void MR::DWI::Tractography::SIFT::SIFTer::perform_filtering()’: src/dwi/tractography/SIFT/sifter.cpp:73:29: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 73 | std::random_shuffle (noncontributing_indices.begin(), noncontributing_indices.end()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/algorithm:63, from ./core/mrtrix.h:27, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/SIFT/sifter.h:22: /usr/include/c++/16/bits/stl_algo.h:4511:5: note: declared here 4511 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ (315/548) [CC] tmp/cmd/shview.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ cmd/shview.cpp -o tmp/cmd/shview.o (316/548) [CC] tmp/cmd/peaks2fixel.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/peaks2fixel.cpp -o tmp/cmd/peaks2fixel.o (317/548) [CC] tmp/cmd/fixelconvert.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from cmd/tcksift.cpp:27: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (318/548) [LB] bin/tcksift g++ tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/cmd/tcksift.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/exec_version.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/SIFT/sifter.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/SIFT/gradient_sort.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/voxel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift (319/548) [CC] tmp/cmd/tsfdivide.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfdivide.cpp -o tmp/cmd/tsfdivide.o (320/548) [CC] tmp/src/dwi/tractography/mapping/writer.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/writer.cpp -o tmp/src/dwi/tractography/mapping/writer.o (321/548) [CC] tmp/cmd/tckmap.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckmap.cpp -o tmp/cmd/tckmap.o (322/548) [LB] bin/shview g++ tmp/src/gui/dialog/file.o tmp/src/gui/shview/icons.o tmp/src/gui/opengl/shader.o tmp/src/gui/dialog/list.o tmp/src/gui/dialog/dicom.o tmp/src/gui/projection.o tmp/src/gui/crosshair.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/dialog/progress.o tmp/src/gui/color_button.o tmp/src/gui/shview/file_open.o tmp/src/gui/dwi/render_frame.o tmp/src/exec_version.o tmp/src/gui/opengl/lighting.o tmp/src/gui/dialog/dialog.o tmp/src/dwi/directions/predefined.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/lighting_dock.o tmp/src/gui/shapes/halfsphere.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/dwi/renderer.o tmp/src/gui/color_button_moc.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/gui.o tmp/src/dwi/directions/set.o tmp/src/gui/opengl/font.o tmp/src/gui/shview/render_window.o tmp/src/gui/opengl/gl.o tmp/src/gui/shview/render_window_moc.o tmp/cmd/shview.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib /usr/lib/x86_64-linux-gnu/libQt5OpenGL.so /usr/lib/x86_64-linux-gnu/libQt5Svg.so /usr/lib/x86_64-linux-gnu/libQt5Widgets.so /usr/lib/x86_64-linux-gnu/libQt5Gui.so /usr/lib/x86_64-linux-gnu/libQt5Network.so /usr/lib/x86_64-linux-gnu/libQt5Core.so -lGL -lpthread -o bin/shview (323/548) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/gaussian/mapper.cpp -o tmp/src/dwi/tractography/mapping/gaussian/mapper.o (324/548) [LB] bin/tsfdivide g++ tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tsfdivide.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfdivide (325/548) [CC] tmp/cmd/mrhistogram.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o (326/548) [LB] bin/peaks2fixel g++ tmp/cmd/peaks2fixel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2fixel (327/548) [CC] tmp/cmd/tckdfc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckdfc.cpp -o tmp/cmd/tckdfc.o (328/548) [CC] tmp/cmd/transformconvert.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformconvert.cpp -o tmp/cmd/transformconvert.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from cmd/afdconnectivity.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ cmd/afdconnectivity.cpp:123:57: required from here 123 | class AFDConnectivity : public DWI::Tractography::SIFT::ModelBase | ^~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (329/548) [LB] bin/afdconnectivity g++ tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/cmd/afdconnectivity.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/voxel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/afdconnectivity (330/548) [LB] bin/mrhistogram g++ tmp/src/exec_version.o tmp/cmd/mrhistogram.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistogram (331/548) [CC] tmp/cmd/mrcolour.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcolour.cpp -o tmp/cmd/mrcolour.o (332/548) [CC] tmp/cmd/shbasis.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/shbasis.cpp -o tmp/cmd/shbasis.o (333/548) [LB] bin/fixelconvert g++ tmp/src/exec_version.o tmp/cmd/fixelconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconvert (334/548) [CC] tmp/cmd/maskdump.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o (335/548) [LB] bin/transformconvert g++ tmp/src/exec_version.o tmp/cmd/transformconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformconvert (336/548) [CC] tmp/cmd/warpinit.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinit.cpp -o tmp/cmd/warpinit.o (337/548) [LB] bin/mrcolour g++ tmp/src/colourmap.o tmp/cmd/mrcolour.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcolour (338/548) [CC] tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o (339/548) [LB] bin/maskdump g++ tmp/src/exec_version.o tmp/cmd/maskdump.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskdump (340/548) [CC] tmp/src/registration/transform/convergence_check.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/convergence_check.cpp -o tmp/src/registration/transform/convergence_check.o (341/548) [CC] tmp/src/registration/transform/initialiser.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o (342/548) [LB] bin/warpinit g++ tmp/src/exec_version.o tmp/cmd/warpinit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinit (343/548) [CC] tmp/src/registration/transform/rigid.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o (344/548) [LB] bin/shbasis g++ tmp/src/exec_version.o tmp/cmd/shbasis.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shbasis (345/548) [CC] tmp/src/registration/multi_contrast.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/multi_contrast.cpp -o tmp/src/registration/multi_contrast.o (346/548) [LB] bin/tckdfc g++ tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/cmd/tckdfc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/voxel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckdfc (347/548) [CC] tmp/cmd/mraverageheader.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mraverageheader.cpp -o tmp/cmd/mraverageheader.o (348/548) [CC] tmp/cmd/tsfthreshold.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfthreshold.cpp -o tmp/cmd/tsfthreshold.o (349/548) [LB] bin/tsfthreshold g++ tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tsfthreshold.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfthreshold (350/548) [CC] tmp/cmd/dirsplit.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o (351/548) [LB] bin/dirsplit g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirsplit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirsplit (352/548) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o: In file included from src/connectome/enhance.h:26, from src/connectome/enhance.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (353/548) [CC] tmp/src/stats/tfce.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o: In file included from src/stats/tfce.h:24, from src/stats/tfce.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (354/548) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o: In file included from src/connectome/enhance.h:26, from cmd/connectomeedit.cpp:18: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (355/548) [LB] bin/connectomeedit g++ tmp/src/connectome/enhance.o tmp/src/exec_version.o tmp/src/connectome/connectome.o tmp/src/stats/tfce.o tmp/cmd/connectomeedit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomeedit (356/548) [CC] tmp/cmd/dwi2mask.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2mask.cpp -o tmp/cmd/dwi2mask.o (357/548) [CC] tmp/src/surface/filter/vertex_transform.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o (358/548) [CC] tmp/cmd/meshconvert.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o (359/548) [CC] tmp/src/surface/filter/base.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/base.cpp -o tmp/src/surface/filter/base.o (360/548) [CC] tmp/src/dwi/tractography/editing/editing.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o (361/548) [LB] bin/tckmap g++ tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/mapping/mapper.o tmp/cmd/tckmap.o tmp/src/dwi/tractography/mapping/gaussian/mapper.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/voxel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckmap (362/548) [CC] tmp/src/dwi/tractography/editing/receiver.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/receiver.cpp -o tmp/src/dwi/tractography/editing/receiver.o (363/548) [CC] tmp/src/dwi/tractography/editing/worker.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/worker.cpp -o tmp/src/dwi/tractography/editing/worker.o (364/548) [LB] bin/meshconvert g++ tmp/src/surface/mesh_multi.o tmp/src/exec_version.o tmp/src/surface/mesh.o tmp/src/surface/polygon.o tmp/src/surface/filter/vertex_transform.o tmp/cmd/meshconvert.o tmp/src/connectome/connectome.o tmp/src/surface/filter/base.o tmp/src/surface/freesurfer.o tmp/src/surface/scalar.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshconvert (365/548) [CC] tmp/cmd/tckedit.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckedit.cpp -o tmp/cmd/tckedit.o (366/548) [CC] tmp/cmd/transformcalc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o (367/548) [CC] tmp/src/fixel/index_remapper.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/fixel/index_remapper.cpp -o tmp/src/fixel/index_remapper.o (368/548) [CC] tmp/src/fixel/filter/smooth.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/fixel/filter/smooth.cpp -o tmp/src/fixel/filter/smooth.o (369/548) [CC] tmp/src/fixel/matrix.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/fixel/matrix.cpp -o tmp/src/fixel/matrix.o (370/548) [LB] bin/tckedit g++ tmp/src/dwi/tractography/editing/editing.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/editing/receiver.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/editing/worker.o tmp/cmd/tckedit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckedit (371/548) [CC] tmp/src/stats/cfe.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/cfe.cpp -o tmp/src/stats/cfe.o (372/548) [CC] tmp/src/fixel/filter/connect.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/fixel/filter/connect.cpp -o tmp/src/fixel/filter/connect.o (373/548) [LB] bin/dwi2mask g++ tmp/src/exec_version.o tmp/cmd/dwi2mask.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2mask (374/548) [CC] tmp/cmd/fixelfilter.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelfilter.cpp -o tmp/cmd/fixelfilter.o (375/548) [CC] tmp/cmd/fixelconnectivity.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelconnectivity.cpp -o tmp/cmd/fixelconnectivity.o (376/548) [LB] bin/mraverageheader g++ tmp/src/registration/transform/initialiser_helpers.o tmp/src/exec_version.o tmp/src/registration/transform/convergence_check.o tmp/src/registration/transform/initialiser.o tmp/src/registration/transform/rigid.o tmp/src/registration/multi_contrast.o tmp/cmd/mraverageheader.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mraverageheader (377/548) [CC] tmp/cmd/labelconvert.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o (378/548) [CC] tmp/cmd/sh2amp.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2amp.cpp -o tmp/cmd/sh2amp.o (379/548) [CC] tmp/src/dwi/tractography/GT/internalenergy.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o (380/548) [LB] bin/fixelconnectivity g++ tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/fixel/index_remapper.o tmp/cmd/fixelconnectivity.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/fixel/matrix.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/voxel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconnectivity (381/548) [CC] tmp/src/dwi/tractography/GT/externalenergy.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 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tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/fixel/filter/connect.o tmp/cmd/fixelfilter.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/voxel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelfilter (385/548) [CC] tmp/src/dwi/tractography/GT/gt.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 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tmp/src/dwi/tractography/GT/particle.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particle.cpp -o tmp/src/dwi/tractography/GT/particle.o (388/548) [CC] tmp/src/dwi/tractography/GT/particlegrid.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particlegrid.cpp -o tmp/src/dwi/tractography/GT/particlegrid.o (389/548) [CC] tmp/cmd/tsfmult.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfmult.cpp -o tmp/cmd/tsfmult.o (390/548) [LB] bin/sh2amp g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/sh2amp.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2amp (391/548) [CC] tmp/cmd/fixelcrop.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o (392/548) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/streamline_stats.cpp -o tmp/src/dwi/tractography/SIFT2/streamline_stats.o (393/548) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o (394/548) [LB] bin/tsfmult g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/cmd/tsfmult.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfmult (395/548) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/line_search.cpp:19: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (396/548) [CC] tmp/cmd/tcksift2.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o (397/548) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o: cmd/transformcalc.cpp: In function ‘void run()’: cmd/transformcalc.cpp:281:51: warning: ‘Eigen::Matrix::Scalar, 3, 1> Eigen::MatrixBase::eulerAngles(Eigen::Index, Eigen::Index, Eigen::Index) const [with Derived = Eigen::Matrix; typename Eigen::internal::traits::Scalar = double; Eigen::Index = long int]’ is deprecated: Use .canonicalEulerAngles() instead. [-Wdeprecated-declarations] 281 | Eigen::Vector3d euler_angles = R.eulerAngles(0, 1, 2); | ~~~~~~~~~~~~~^~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Geometry:37, from cmd/transformcalc.cpp:17: /usr/include/eigen3/Eigen/src/Geometry/EulerAngles.h:136:77: note: declared here 136 | EIGEN_DEVICE_FUNC inline Matrix::Scalar, 3, 1> MatrixBase::eulerAngles( | ^~~~~~~~~~~~~~~~~~~ (398/548) [LB] bin/transformcalc g++ tmp/src/exec_version.o tmp/cmd/transformcalc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcalc g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:21: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (399/548) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o (400/548) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/fixel_updater.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (401/548) [CC] tmp/src/stats/permtest.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/permtest.cpp -o tmp/src/stats/permtest.o (402/548) [LB] bin/tckglobal g++ tmp/src/dwi/tractography/GT/internalenergy.o tmp/src/dwi/tractography/GT/externalenergy.o tmp/src/dwi/tractography/GT/mhsampler.o tmp/src/dwi/tractography/GT/gt.o tmp/cmd/tckglobal.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/file_base.o tmp/src/exec_version.o tmp/src/dwi/tractography/GT/particle.o tmp/src/dwi/tractography/GT/particlegrid.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckglobal (403/548) [CC] tmp/cmd/fixelcfestats.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/reg_calculator.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (404/548) [CC] tmp/cmd/amp2sh.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/amp2sh.cpp -o tmp/cmd/amp2sh.o (405/548) [LB] bin/fixelcrop g++ tmp/src/exec_version.o tmp/cmd/fixelcrop.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcrop (406/548) [CC] tmp/cmd/dwiextract.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o (407/548) [CC] tmp/cmd/tckstats.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckstats.cpp -o tmp/cmd/tckstats.o (408/548) [LB] bin/dwiextract g++ tmp/cmd/dwiextract.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwiextract (409/548) [CC] tmp/cmd/mrhistmatch.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/tckfactor.cpp:31: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (410/548) [CC] tmp/cmd/tcktransform.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcktransform.cpp -o tmp/cmd/tcktransform.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o: In file included from src/dwi/tractography/mapping/fixel_td_map.h:21, from cmd/tcksift2.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (411/548) [LB] bin/tcksift2 g++ tmp/src/dwi/tractography/SIFT2/streamline_stats.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/SIFT2/line_search.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/cmd/tcksift2.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/SIFT2/tckfactor.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/SIFT2/fixel_updater.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/SIFT2/reg_calculator.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/directions/mask.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/voxel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift2 (412/548) [CC] tmp/cmd/dirgen.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirgen.cpp -o tmp/cmd/dirgen.o (413/548) [LB] bin/tckstats g++ tmp/cmd/tckstats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckstats (414/548) [CC] tmp/cmd/labelstats.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/labelstats.cpp -o tmp/cmd/labelstats.o (415/548) [LB] bin/dirgen g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirgen.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirgen (416/548) [CC] tmp/cmd/sh2peaks.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o (417/548) [LB] bin/labelstats g++ tmp/cmd/labelstats.o tmp/src/exec_version.o tmp/src/connectome/connectome.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelstats (418/548) [CC] tmp/cmd/5ttcheck.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o (419/548) [LB] bin/fixelcfestats g++ tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/properties.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/file_base.o tmp/src/fixel/filter/smooth.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/stats/permtest.o tmp/src/fixel/matrix.o tmp/cmd/fixelcfestats.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/stats/cfe.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/voxel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcfestats (420/548) [CC] tmp/cmd/mrfilter.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o (421/548) [LB] bin/tcktransform g++ tmp/cmd/tcktransform.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcktransform (422/548) [CC] tmp/cmd/tsfsmooth.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfsmooth.cpp -o tmp/cmd/tsfsmooth.o (423/548) [LB] bin/tsfsmooth g++ tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/cmd/tsfsmooth.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfsmooth (424/548) [LB] bin/5ttcheck g++ tmp/src/dwi/tractography/ACT/act.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/5ttcheck.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttcheck (425/548) [CC] tmp/cmd/mrtransform.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o (426/548) [CC] tmp/cmd/warpinvert.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinvert.cpp -o tmp/cmd/warpinvert.o (427/548) [LB] bin/mrhistmatch g++ tmp/src/exec_version.o tmp/cmd/mrhistmatch.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistmatch (428/548) [CC] tmp/cmd/fixelreorient.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelreorient.cpp -o tmp/cmd/fixelreorient.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o: In file included from cmd/sh2peaks.cpp:18: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.677[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (429/548) [LB] bin/sh2peaks g++ tmp/src/exec_version.o tmp/cmd/sh2peaks.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2peaks (430/548) [LB] bin/amp2sh g++ tmp/cmd/amp2sh.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2sh (431/548) [CC] tmp/cmd/label2mesh.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/label2mesh.cpp -o tmp/cmd/label2mesh.o (432/548) [CC] tmp/cmd/mrcheckerboardmask.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o (433/548) [LB] bin/mrcheckerboardmask g++ tmp/src/exec_version.o tmp/cmd/mrcheckerboardmask.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcheckerboardmask (434/548) [CC] tmp/cmd/dwidenoise.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwidenoise.cpp -o tmp/cmd/dwidenoise.o (435/548) [LB] bin/warpinvert g++ tmp/src/exec_version.o tmp/cmd/warpinvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinvert (436/548) [CC] tmp/cmd/fixel2sh.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2sh.cpp -o tmp/cmd/fixel2sh.o (437/548) [LB] bin/label2mesh g++ tmp/src/surface/mesh_multi.o tmp/cmd/label2mesh.o tmp/src/exec_version.o tmp/src/surface/mesh.o tmp/src/surface/polygon.o tmp/src/surface/scalar.o tmp/src/connectome/connectome.o tmp/src/surface/freesurfer.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2mesh (438/548) [CC] tmp/cmd/fixelcorrespondence.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcorrespondence.cpp -o tmp/cmd/fixelcorrespondence.o (439/548) [LB] bin/fixelreorient g++ tmp/src/exec_version.o tmp/cmd/fixelreorient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelreorient (440/548) [CC] tmp/cmd/5tt2vis.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2vis.cpp -o tmp/cmd/5tt2vis.o (441/548) [LB] bin/fixel2sh g++ tmp/src/exec_version.o tmp/cmd/fixel2sh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2sh (442/548) [CC] tmp/cmd/tcksample.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksample.cpp -o tmp/cmd/tcksample.o (443/548) [LB] bin/mrfilter g++ tmp/src/exec_version.o tmp/cmd/mrfilter.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrfilter (444/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD1.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD1.cpp -o tmp/src/dwi/tractography/algorithms/iFOD1.o (445/548) [LB] bin/5tt2vis g++ tmp/src/dwi/tractography/ACT/act.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/rng.o tmp/cmd/5tt2vis.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2vis (446/548) [CC] tmp/src/dwi/tractography/tracking/shared.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/shared.cpp -o tmp/src/dwi/tractography/tracking/shared.o (447/548) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/write_kernel.cpp -o tmp/src/dwi/tractography/tracking/write_kernel.o (448/548) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/gmwmi.cpp -o tmp/src/dwi/tractography/seeding/gmwmi.o (449/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD2.cpp -o tmp/src/dwi/tractography/algorithms/iFOD2.o (450/548) [LB] bin/fixelcorrespondence g++ tmp/src/exec_version.o tmp/cmd/fixelcorrespondence.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcorrespondence (451/548) [CC] tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o (452/548) [CC] tmp/src/dwi/tractography/tracking/early_exit.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/early_exit.cpp -o tmp/src/dwi/tractography/tracking/early_exit.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD2.cpp -o tmp/src/dwi/tractography/algorithms/iFOD2.o: In file included from src/dwi/tractography/algorithms/iFOD2.cpp:17: src/dwi/tractography/algorithms/iFOD2.h: In member function ‘virtual MR::DWI::Tractography::Tracking::term_t MR::DWI::Tractography::Algorithms::iFOD2::next()’: src/dwi/tractography/algorithms/iFOD2.h:241:31: warning: unused variable ‘next_pos’ [-Wunused-variable] 241 | Eigen::Vector3f next_pos, next_dir; | ^~~~~~~~ src/dwi/tractography/algorithms/iFOD2.h:241:41: warning: unused variable ‘next_dir’ [-Wunused-variable] 241 | Eigen::Vector3f next_pos, next_dir; | ^~~~~~~~ (453/548) [CC] tmp/src/dwi/tractography/tracking/method.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/method.cpp -o tmp/src/dwi/tractography/tracking/method.o (454/548) [CC] tmp/src/dwi/tractography/seeding/basic.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/basic.cpp -o tmp/src/dwi/tractography/seeding/basic.o (455/548) [LB] bin/tcksample g++ tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/cmd/tcksample.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/voxel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksample (456/548) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/ACT/gmwmi.cpp -o tmp/src/dwi/tractography/ACT/gmwmi.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/seeding.h:23, from src/dwi/tractography/seeding/seeding.cpp:18: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (457/548) [CC] tmp/cmd/tckgen.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o (458/548) [CC] tmp/src/dwi/tractography/seeding/dynamic.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o (459/548) [CC] tmp/src/dwi/tractography/tracking/tractography.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/tractography.cpp -o tmp/src/dwi/tractography/tracking/tractography.o (460/548) [CC] tmp/cmd/fixel2tsf.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o (461/548) [CC] tmp/cmd/warp2metric.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warp2metric.cpp -o tmp/cmd/warp2metric.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/dynamic.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (462/548) [CC] tmp/cmd/mrcalc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o (463/548) [LB] bin/fixel2tsf g++ tmp/cmd/fixel2tsf.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/voxel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2tsf (464/548) [CC] tmp/cmd/meshfilter.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o (465/548) [LB] bin/warp2metric g++ tmp/src/exec_version.o tmp/cmd/warp2metric.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warp2metric (466/548) [CC] tmp/src/surface/filter/smooth.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o (467/548) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o (468/548) [LB] bin/meshfilter g++ tmp/cmd/meshfilter.o tmp/src/surface/mesh_multi.o tmp/src/exec_version.o tmp/src/surface/filter/smooth.o tmp/src/surface/polygon.o tmp/src/surface/mesh.o tmp/src/surface/scalar.o tmp/src/connectome/connectome.o tmp/src/surface/filter/base.o tmp/src/surface/freesurfer.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshfilter (469/548) [CC] tmp/src/stats/cluster.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/cluster.cpp -o tmp/src/stats/cluster.o (470/548) [LB] bin/mrcalc g++ tmp/src/exec_version.o tmp/cmd/mrcalc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcalc (471/548) [CC] tmp/cmd/vectorstats.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/vectorstats.cpp -o tmp/cmd/vectorstats.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/cluster.cpp -o tmp/src/stats/cluster.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from src/stats/cluster.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (472/548) [CC] tmp/cmd/tck2fixel.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2fixel.cpp -o tmp/cmd/tck2fixel.o (473/548) [LB] bin/vectorstats g++ tmp/src/stats/permtest.o tmp/src/exec_version.o tmp/cmd/vectorstats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/vectorstats (474/548) [CC] tmp/cmd/mrmetric.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from cmd/mrclusterstats.cpp:30: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (475/548) [LB] bin/mrclusterstats g++ tmp/cmd/mrclusterstats.o tmp/src/exec_version.o tmp/src/stats/cluster.o tmp/src/stats/permtest.o tmp/src/stats/tfce.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrclusterstats (476/548) [CC] tmp/cmd/fod2fixel.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fod2fixel.cpp -o tmp/cmd/fod2fixel.o (477/548) [LB] bin/dwidenoise g++ tmp/cmd/dwidenoise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwidenoise (478/548) [CC] tmp/cmd/fixel2peaks.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2peaks.cpp -o tmp/cmd/fixel2peaks.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/tracking/exec.h:36, from cmd/tckgen.cpp:23: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from cmd/tckgen.cpp:31: src/dwi/tractography/algorithms/iFOD2.h: In member function ‘virtual MR::DWI::Tractography::Tracking::term_t MR::DWI::Tractography::Algorithms::iFOD2::next()’: src/dwi/tractography/algorithms/iFOD2.h:241:31: warning: unused variable ‘next_pos’ [-Wunused-variable] 241 | Eigen::Vector3f next_pos, next_dir; | ^~~~~~~~ src/dwi/tractography/algorithms/iFOD2.h:241:41: warning: unused variable ‘next_dir’ [-Wunused-variable] 241 | Eigen::Vector3f next_pos, next_dir; | ^~~~~~~~ In file included from src/dwi/tractography/mapping/mapper_plugins.h:24, from src/dwi/tractography/mapping/mapper.h:31, from src/dwi/tractography/tracking/exec.h:32: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.2174[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (479/548) [LB] bin/tckgen g++ tmp/src/dwi/tractography/algorithms/iFOD1.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/tracking/shared.o tmp/src/dwi/tractography/tracking/write_kernel.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/seeding/gmwmi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/algorithms/iFOD2.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/seeding.o tmp/src/dwi/tractography/tracking/early_exit.o tmp/src/dwi/tractography/tracking/method.o tmp/src/dwi/tractography/seeding/basic.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/ACT/gmwmi.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/cmd/tckgen.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/seeding/dynamic.o tmp/src/dwi/tractography/tracking/tractography.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/voxel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckgen (480/548) [CC] tmp/cmd/dwi2tensor.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2tensor.cpp -o tmp/cmd/dwi2tensor.o (481/548) [LB] bin/fod2fixel g++ tmp/src/exec_version.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/mask.o tmp/cmd/fod2fixel.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/fmls.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2fixel (482/548) [CC] tmp/cmd/warpconvert.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpconvert.cpp -o tmp/cmd/warpconvert.o (483/548) [LB] bin/mrtransform g++ tmp/src/dwi/directions/predefined.o tmp/src/exec_version.o tmp/cmd/mrtransform.o tmp/src/registration/multi_contrast.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrtransform (484/548) [LB] bin/tck2fixel g++ tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/cmd/tck2fixel.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/voxel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2fixel (485/548) [CC] tmp/cmd/tckresample.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckresample.cpp -o tmp/cmd/tckresample.o (486/548) [CC] tmp/cmd/connectomestats.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o (487/548) [LB] bin/fixel2peaks g++ tmp/cmd/fixel2peaks.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2peaks (488/548) [CC] tmp/cmd/dcminfo.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dcminfo.cpp -o tmp/cmd/dcminfo.o (489/548) [LB] bin/dcminfo g++ tmp/cmd/dcminfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcminfo (490/548) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o (491/548) [LB] bin/tckresample g++ tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/cmd/tckresample.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckresample (492/548) [CC] tmp/cmd/tckinfo.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckinfo.cpp -o tmp/cmd/tckinfo.o (493/548) [LB] bin/dwi2tensor g++ tmp/src/exec_version.o tmp/cmd/dwi2tensor.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2tensor (494/548) [CC] tmp/cmd/mrdump.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdump.cpp -o tmp/cmd/mrdump.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o: In file included from src/connectome/enhance.h:26, from cmd/connectomestats.cpp:28: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (495/548) [LB] bin/connectomestats g++ tmp/src/connectome/enhance.o tmp/src/exec_version.o tmp/cmd/connectomestats.o tmp/src/stats/permtest.o tmp/src/connectome/connectome.o tmp/src/stats/tfce.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomestats (496/548) [CC] tmp/cmd/voxel2fixel.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/voxel2fixel.cpp -o tmp/cmd/voxel2fixel.o (497/548) [LB] bin/tckinfo g++ tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/cmd/tckinfo.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckinfo (498/548) [CC] tmp/cmd/shconv.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/shconv.cpp -o tmp/cmd/shconv.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o: In copy constructor ‘constexpr BoundsCheck::BoundsCheck(const BoundsCheck&)’, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = BoundsCheck; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = BoundsCheck&; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/warpcorrect.cpp:113:10: cmd/warpcorrect.cpp:53:7: warning: ‘func.BoundsCheck::val’ may be used uninitialized [-Wmaybe-uninitialized] 53 | class BoundsCheck { MEMALIGN(BoundsCheck) | ^~~~~~~~~~~ cmd/warpcorrect.cpp: In function ‘void run()’: cmd/warpcorrect.cpp:110:8: note: ‘func’ declared here 110 | auto func = BoundsCheck (precision, oob_vector, count); | ^~~~ (499/548) [LB] bin/warpcorrect g++ tmp/cmd/warpcorrect.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpcorrect (500/548) [LB] bin/warpconvert g++ tmp/src/exec_version.o tmp/cmd/warpconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpconvert (501/548) [CC] tmp/cmd/mrgrid.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrgrid.cpp -o tmp/cmd/mrgrid.o (502/548) [CC] tmp/cmd/maskfilter.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskfilter.cpp -o tmp/cmd/maskfilter.o (503/548) [LB] bin/shconv g++ tmp/cmd/shconv.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shconv (504/548) [CC] tmp/cmd/mredit.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mredit.cpp -o tmp/cmd/mredit.o (505/548) [LB] bin/voxel2fixel g++ tmp/cmd/voxel2fixel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2fixel (506/548) [CC] tmp/cmd/label2colour.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/label2colour.cpp -o tmp/cmd/label2colour.o (507/548) [LB] bin/mredit g++ tmp/cmd/mredit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mredit (508/548) [CC] tmp/cmd/dirmerge.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o (509/548) [LB] bin/maskfilter g++ tmp/src/exec_version.o tmp/cmd/maskfilter.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskfilter (510/548) [CC] tmp/cmd/mtnormalise.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mtnormalise.cpp -o tmp/cmd/mtnormalise.o (511/548) [LB] bin/label2colour g++ tmp/cmd/label2colour.o tmp/src/exec_version.o tmp/src/connectome/connectome.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2colour (512/548) [CC] tmp/cmd/mrcentroid.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcentroid.cpp -o tmp/cmd/mrcentroid.o (513/548) [LB] bin/mrdump g++ tmp/src/exec_version.o tmp/cmd/mrdump.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdump (514/548) [CC] tmp/cmd/tsfinfo.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfinfo.cpp -o tmp/cmd/tsfinfo.o (515/548) [LB] bin/dirmerge g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirmerge.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirmerge (516/548) [CC] tmp/cmd/tckconvert.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o (517/548) [LB] bin/mrgrid g++ tmp/src/exec_version.o tmp/cmd/mrgrid.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrgrid (518/548) [CC] tmp/cmd/dwi2adc.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o (519/548) [LB] bin/tsfinfo g++ tmp/cmd/tsfinfo.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfinfo (520/548) [CC] tmp/cmd/mrconvert.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o (521/548) [LB] bin/mrmetric g++ tmp/src/exec_version.o tmp/src/registration/transform/convergence_check.o tmp/src/registration/transform/rigid.o tmp/src/registration/multi_contrast.o tmp/cmd/mrmetric.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmetric (522/548) [CC] tmp/cmd/dirorder.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirorder.cpp -o tmp/cmd/dirorder.o (523/548) [LB] bin/mrcentroid g++ tmp/src/exec_version.o tmp/cmd/mrcentroid.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcentroid (524/548) [CC] tmp/src/registration/nonlinear.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o (525/548) [LB] bin/dwi2adc g++ tmp/src/exec_version.o tmp/cmd/dwi2adc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2adc (526/548) [CC] tmp/cmd/mrregister.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o (527/548) [LB] bin/dirorder g++ tmp/cmd/dirorder.o tmp/src/exec_version.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirorder (528/548) [CC] tmp/src/registration/transform/affine.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o (529/548) [LB] bin/mtnormalise g++ tmp/src/exec_version.o tmp/cmd/mtnormalise.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mtnormalise (530/548) [CC] tmp/src/registration/linear.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/linear.cpp -o tmp/src/registration/linear.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o: cmd/tckconvert.cpp: In member function ‘Eigen::Vector3f PLYWriter::computeNormal(const MR::DWI::Tractography::Streamline&)’: cmd/tckconvert.cpp:390:33: warning: ‘Eigen::JacobiSVD::PlainObject, Options> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with int Options = 0; Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’ is deprecated: Options should be specified using method's template parameter. [-Wdeprecated-declarations] 390 | auto svd = coord.jacobiSvd(Eigen::ComputeThinU | Eigen::ComputeThinV); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/SVD:39, from /usr/include/eigen3/Eigen/Geometry:13, from ./core/types.h:78, from ./core/mrtrix.h:38, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckconvert.cpp:19: /usr/include/eigen3/Eigen/src/SVD/JacobiSVD.h:839:63: note: declared here 839 | JacobiSVD::PlainObject, Options> MatrixBase::jacobiSvd( | ^~~~~~~~~~~~~~~~~~~ (531/548) [LB] bin/tckconvert g++ tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/cmd/tckconvert.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckconvert (532/548) [CC] tmp/cmd/voxel2mesh.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/voxel2mesh.cpp -o tmp/cmd/voxel2mesh.o (533/548) [CC] tmp/cmd/amp2response.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/amp2response.cpp -o tmp/cmd/amp2response.o (534/548) [LB] bin/voxel2mesh g++ tmp/cmd/voxel2mesh.o tmp/src/exec_version.o tmp/src/surface/mesh.o tmp/src/surface/polygon.o tmp/src/surface/scalar.o tmp/src/connectome/connectome.o tmp/src/surface/freesurfer.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2mesh (535/548) [CC] tmp/cmd/transformcompose.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcompose.cpp -o tmp/cmd/transformcompose.o (536/548) [LB] bin/mrconvert g++ tmp/src/exec_version.o tmp/cmd/mrconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrconvert (537/548) [CC] tmp/cmd/dirflip.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirflip.cpp -o tmp/cmd/dirflip.o (538/548) [CC] tmp/src/surface/algo/mesh2image.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/algo/mesh2image.cpp -o tmp/src/surface/algo/mesh2image.o (539/548) [LB] bin/transformcompose g++ tmp/src/exec_version.o tmp/cmd/transformcompose.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcompose (540/548) [CC] tmp/cmd/mesh2voxel.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o (541/548) [LB] bin/dirflip g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirflip.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirflip (542/548) [CC] tmp/cmd/mrcat.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcat.cpp -o tmp/cmd/mrcat.o (543/548) [CC] tmp/cmd/sh2response.o g++ -c -std=c++14 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2response.cpp -o tmp/cmd/sh2response.o (544/548) [LB] bin/amp2response g++ tmp/src/exec_version.o tmp/cmd/amp2response.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2response (545/548) [LB] bin/mesh2voxel g++ tmp/src/surface/algo/mesh2image.o tmp/src/surface/mesh_multi.o tmp/cmd/mesh2voxel.o tmp/src/exec_version.o tmp/src/surface/mesh.o tmp/src/surface/polygon.o tmp/src/surface/filter/vertex_transform.o tmp/src/surface/scalar.o tmp/src/connectome/connectome.o tmp/src/surface/filter/base.o tmp/src/surface/freesurfer.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mesh2voxel (546/548) [LB] bin/sh2response g++ tmp/cmd/sh2response.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2response (547/548) [LB] bin/mrcat g++ tmp/src/exec_version.o tmp/cmd/mrcat.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcat (548/548) [LB] bin/mrregister g++ tmp/src/registration/transform/initialiser.o tmp/src/registration/nonlinear.o tmp/cmd/mrregister.o tmp/src/registration/transform/rigid.o tmp/src/registration/multi_contrast.o tmp/src/registration/transform/affine.o tmp/src/exec_version.o tmp/src/registration/transform/convergence_check.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/registration/linear.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrregister make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.8' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.8' dh_install # Remove __pycache__ dirs that were created in build time tests find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.8' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a debian/rules override_dh_link make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.8' cp debian/mrtrix3.links.in debian/mrtrix3.links : # Generate symlinks for all the mr* commands for f in debian/mrtrix3/usr/lib/mrtrix3/bin/*; do \ bn=$(basename $f); \ if [ "$bn" = "dirsplit" ]; then \ continue; \ fi; \ echo "usr/lib/mrtrix3/bin/$bn usr/bin/$bn" >> debian/mrtrix3.links; \ echo "/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/$bn.1.gz" >> debian/mrtrix3.links; \ done echo "/usr/share/mrtrix3/matlab /usr/share/matlab/site/m/mrtrix" >> debian/mrtrix3.links echo "/usr/share/mrtrix3/matlab /usr/share/octave/site/m/mrtrix" >> debian/mrtrix3.links dh_link make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.8' dh_missing -a dh_strip -a dh_makeshlibs -a debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.8' dh_shlibdeps -l /build/reproducible-path/mrtrix3-3.0.8/lib dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.8' dh_fixperms -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.8' dh_compress -X.html make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.8' dh_installdeb -a dh_computeautosubstvars -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package mrtrix3: substitution variable ${misc:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'mrtrix3-dbgsym' in '../mrtrix3-dbgsym_3.0.8-4_amd64.deb'. dpkg-deb: building package 'mrtrix3' in '../mrtrix3_3.0.8-4_amd64.deb'. dpkg-genbuildinfo --build=any -O../mrtrix3_3.0.8-4_amd64.buildinfo dpkg-genchanges --build=any -O../mrtrix3_3.0.8-4_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-10-25T01:33:06Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 25 Oct 2026 01:33:07 +0000 | +------------------------------------------------------------------------------+ mrtrix3_3.0.8-4_amd64.changes: ------------------------------ Format: 1.8 Date: Thu, 22 Oct 2026 01:20:00 +0200 Source: mrtrix3 Binary: mrtrix3 mrtrix3-dbgsym Architecture: amd64 Version: 3.0.8-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Santiago Vila Description: mrtrix3 - diffusion-weighted MRI white matter tractography Closes: 1114645 1151587 Changes: mrtrix3 (3.0.8-4) unstable; urgency=medium . * Team upload. * Honor parallel=n in DEB_BUILD_OPTIONS. Closes: #1114645. * Allow building the package on machines with less than 4 CPUs. Closes: #1151587. * Use "rm -f" to clean things in debian/rules. Checksums-Sha1: 2725d5fafd263d09479f3432c94210d66ea270f2 691741548 mrtrix3-dbgsym_3.0.8-4_amd64.deb a9db0c6fbb4d8d1080df0b26ac65355ac0d11a8e 16538 mrtrix3_3.0.8-4_amd64.buildinfo f0ea9831b7a616474f81c463a19b8edafeb54674 10753024 mrtrix3_3.0.8-4_amd64.deb Checksums-Sha256: 7bef57e611c0477ed6baf38b94fbe6858d7e3799766da95fd07f688eaa587b50 691741548 mrtrix3-dbgsym_3.0.8-4_amd64.deb 9d1e9ddabd067e29e0c8d2e2a171e1199adc3138135f86a804a126de830afbd5 16538 mrtrix3_3.0.8-4_amd64.buildinfo af58f6703b364e8720c72ec2a75e9a2e7a606c8320fc40df5ef0471fc481167e 10753024 mrtrix3_3.0.8-4_amd64.deb Files: c258a54c5625c8204eca8fe8259a0971 691741548 debug optional mrtrix3-dbgsym_3.0.8-4_amd64.deb f9bbf10aae39d22c9affb023e0b8eb0f 16538 science optional mrtrix3_3.0.8-4_amd64.buildinfo 1f65f407fc4441578fe5a8e390530c0b 10753024 science optional mrtrix3_3.0.8-4_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Sun, 25 Oct 2026 01:33:07 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: mrtrix3 Binary: mrtrix3 mrtrix3-dbgsym Architecture: amd64 Version: 3.0.8-4 Checksums-Md5: c258a54c5625c8204eca8fe8259a0971 691741548 mrtrix3-dbgsym_3.0.8-4_amd64.deb 1f65f407fc4441578fe5a8e390530c0b 10753024 mrtrix3_3.0.8-4_amd64.deb Checksums-Sha1: 2725d5fafd263d09479f3432c94210d66ea270f2 691741548 mrtrix3-dbgsym_3.0.8-4_amd64.deb f0ea9831b7a616474f81c463a19b8edafeb54674 10753024 mrtrix3_3.0.8-4_amd64.deb Checksums-Sha256: 7bef57e611c0477ed6baf38b94fbe6858d7e3799766da95fd07f688eaa587b50 691741548 mrtrix3-dbgsym_3.0.8-4_amd64.deb af58f6703b364e8720c72ec2a75e9a2e7a606c8320fc40df5ef0471fc481167e 10753024 mrtrix3_3.0.8-4_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 25 Oct 2026 01:32:59 +0000 Build-Path: /build/reproducible-path/mrtrix3-3.0.8 Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.19-3), autopoint (= 1.0-5), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-4), bc (= 1.07.1-4), binutils (= 2.47.50.20261021-1), binutils-common (= 2.47.50.20261021-1), binutils-x86-64-linux-gnu (= 2.47.50.20261021-1), bsdextrautils (= 2.42.4-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), comerr-dev (= 2.1-1.47.4-1+b2), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-3), cpp-16-x86-64-linux-gnu (= 16.2.0-3), cpp-x86-64-linux-gnu (= 4:16.1.0-3), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.5), debianutils (= 5.24), dh-autoreconf (= 23), dh-python (= 7.20261019), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.11), dpkg-dev (= 1.23.11), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-3), fontconfig (= 2.17.1-5), fontconfig-config (= 2.17.1-5), fonts-dejavu-core (= 2.37-9), fonts-dejavu-mono (= 2.37-9), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-3), g++-16-x86-64-linux-gnu (= 16.2.0-3), g++-x86-64-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-3), gcc-16-base (= 16.2.0-3), gcc-16-x86-64-linux-gnu (= 16.2.0-3), gcc-x86-64-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-5), gettext-base (= 1.0-5), gfortran (= 4:16.1.0-3), gfortran-16 (= 16.2.0-3), gfortran-16-x86-64-linux-gnu (= 16.2.0-3), gfortran-x86-64-linux-gnu (= 4:16.1.0-3), grep (= 3.12-1), groff-base (= 1.24.2-2), gzip (= 1.14-1), hdf5-helpers (= 2.2.0+repack-5), hicolor-icon-theme (= 0.18-2), hostname (= 3.25), ibverbs-providers (= 65.0-1.1), imagemagick (= 8:7.1.2.33+dfsg1-1), imagemagick-7-common (= 8:7.1.2.33+dfsg1-1), imagemagick-7.q16 (= 8:7.1.2.33+dfsg1-1), init-system-helpers (= 1.69+nmu3), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.22.1-3), libacl1 (= 2.4.0-1), libaec-dev (= 1.1.7-1), libaec0 (= 1.1.7-1), libamd-comgr3 (= 7.0.2+dfsg-3), libamd3 (= 1:7.14.1+dfsg-1), libamdhip64-6 (= 6.4.3-5), libarchive-zip-perl (= 1.68-1), libarpack2t64 (= 3.9.1-6+b2), libasan8 (= 16.2.0-3), libasound2-data (= 1.2.16.1-2), libasound2t64 (= 1.2.16.1-2), libatomic1 (= 16.2.0-3), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.2.1-1), libaudit1 (= 1:4.2.1-1), libavahi-client3 (= 0.8-18), libavahi-common-data (= 0.8-18), libavahi-common3 (= 0.8-18), libb2-1 (= 0.98.1-1.1+b3), libbinutils (= 2.47.50.20261021-1), libblas-dev (= 3.12.1-8), libblas3 (= 3.12.1-8), libblkid1 (= 2.42.4-1), libbrotli-dev (= 1.2.0-4+b1), libbrotli1 (= 1.2.0-4+b1), libbsd0 (= 0.12.2-3), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.43-7), libc-dev-bin (= 2.43-7), libc-gconv-modules-extra (= 2.43-7), libc6 (= 2.43-7), libc6-dev (= 2.43-7), libcairo2 (= 1.18.4-3+b1), libcamd3 (= 1:7.14.1+dfsg-1), libcap-ng0 (= 0.9.6-1), libcc1-0 (= 16.2.0-3), libccolamd3 (= 1:7.14.1+dfsg-1), libcholmod5 (= 1:7.14.1+dfsg-1), libclang-common-21-dev (= 1:21.1.8-14), libcolamd3 (= 1:7.14.1+dfsg-1), libcom-err2 (= 1.47.4-1+b2), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47.50.20261021-1), libctf0 (= 2.47.50.20261021-1), libcups2t64 (= 2.4.20-1), libcurl4-gnutls (= 8.23.0-1), libcurl4-openssl-dev (= 8.23.0-1), libcurl4t64 (= 8.23.0-1), libcxsparse4 (= 1:7.14.1+dfsg-1), libdatrie1 (= 0.2.14-2), libdav1d7 (= 1.5.4-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdbus-1-3 (= 1.16.2-8), libde265-0 (= 1.1.3-1+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdecor-0-0 (= 0.2.5-1+b1), libdeflate-dev (= 1.25-1), libdeflate0 (= 1.25-1), libdouble-conversion3 (= 3.4.0-1+b1), libdpkg-perl (= 1.23.11), libdrm-amdgpu1 (= 2.4.134-3), libdrm-common (= 2.4.134-3), libdrm-intel1 (= 2.4.134-3), libdrm2 (= 2.4.134-3), libduktape207 (= 2.7.0-2+b3), libedit2 (= 3.1-20260512-1), libegl-dev (= 1.7.0-3+b1), libegl-mesa0 (= 26.2.5-1), libegl1 (= 1.7.0-3+b1), libeigen3-dev (= 5.0.1-3), libelf1t64 (= 0.196-1), libesmtp6 (= 1.1.0-3.2+b2), libevdev2 (= 1.14.0+dfsg-1), libevent-2.1-7t64 (= 2.1.13-stable-1), libevent-core-2.1-7t64 (= 2.1.13-stable-1), libevent-pthreads-2.1-7t64 (= 2.1.13-stable-1), libexpat1 (= 2.9.0-1), libfabric1 (= 2.1.0-1.1+b2), libffi8 (= 3.8.0-2), libfftw3-bin (= 3.3.11-1), libfftw3-dev (= 3.3.11-1), libfftw3-double3 (= 3.3.11-1), libfftw3-long3 (= 3.3.11-1), libfftw3-quad3 (= 3.3.11-1), libfftw3-single3 (= 3.3.11-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libflac14 (= 1.5.0+ds-5+b1), libfltk-gl1.4 (= 1.4.4-4), libfltk1.4 (= 1.4.4-4), libfontconfig1 (= 2.17.1-5), libfreetype6 (= 2.14.3+dfsg-3), libfribidi0 (= 1.0.16-5+b1), libfuse3-4 (= 3.18.3-1), libgbm1 (= 26.2.5-1), libgcc-16-dev (= 16.2.0-3), libgcc-s1 (= 16.2.0-3), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgfortran-16-dev (= 16.2.0-3), libgfortran5 (= 16.2.0-3), libgl-dev (= 1.7.0-3+b1), libgl1 (= 1.7.0-3+b1), libgl1-mesa-dri (= 26.2.5-1), libgl2ps1.4 (= 1.4.2+dfsg1-4+b1), libglib2.0-0t64 (= 2.90.1-2), libglpk40 (= 5.0-3), libglu1-mesa (= 9.0.2-1.1+b4), libglu1-mesa-dev (= 9.0.2-1.1+b4), libglvnd0 (= 1.7.0-3+b1), libglx-dev (= 1.7.0-3+b1), libglx-mesa0 (= 26.2.5-1), libglx0 (= 1.7.0-3+b1), libgmp-dev (= 2:6.3.0+dfsg-5+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b2), libgnutls-dane0t64 (= 3.8.13-1), libgnutls28-dev (= 3.8.13-1), libgnutls30t64 (= 3.8.13-1), libgomp1 (= 16.2.0-3), libgprofng0 (= 2.47.50.20261021-1), libgraphicsmagick++-q16-12t64 (= 1.4+really1.3.49-1), libgraphicsmagick-q16-3t64 (= 1.4+really1.3.49-1), libgraphite2-3 (= 1.3.15-2), libgsl-dev (= 2.8+dfsg-6+b1), libgsl28 (= 2.8+dfsg-6+b1), libgslcblas0 (= 2.8+dfsg-6+b1), libgssapi-krb5-2 (= 1.22.1-3), libgssrpc4t64 (= 1.22.1-3), libgudev-1.0-0 (= 238-7+b2), libharfbuzz0b (= 12.3.2-2+b2), libhdf5-320 (= 2.2.0+repack-5), libhdf5-cpp-320 (= 2.2.0+repack-5), libhdf5-dev (= 2.2.0+repack-5), libhdf5-fortran-320 (= 2.2.0+repack-5), libhdf5-hl-320 (= 2.2.0+repack-5), libhdf5-hl-cpp-320 (= 2.2.0+repack-5), libhdf5-hl-fortran-320 (= 2.2.0+repack-5), libhdf5-openmpi-320 (= 2.2.0+repack-5), libheif-plugin-dav1d (= 1.23.6-2), libheif-plugin-libde265 (= 1.23.6-2), libheif1 (= 1.23.6-2), libhogweed6t64 (= 3.10.2-1+b1), libhsa-runtime64-1 (= 6.4.3+dfsg-5), libhwasan0 (= 16.2.0-3), libhwloc-plugins (= 2.15.0-2), libhwloc15 (= 2.15.0-2), libhwy1t64 (= 1.3.0-5.1), libibmad5 (= 65.0-1.1), libibumad3 (= 65.0-1.1), libibverbs1 (= 65.0-1.1), libice6 (= 2:1.1.1-1+b2), libicu78 (= 78.3-2), libidn2-0 (= 2.3.8-5), libidn2-dev (= 2.3.8-5), libinput-bin (= 1.31.3-1), libinput10 (= 1.31.3-1), libintl-perl (= 1.37-1), libisl23 (= 0.28-1), libitm1 (= 16.2.0-3), libjack-jackd2-0 (= 1.9.22~dfsg-6), libjansson4 (= 2.15.1-1), libjbig-dev (= 2.1-6.1+b3), libjbig0 (= 2.1-6.1+b3), libjpeg-dev (= 1:3.1.3-4), libjpeg62-turbo (= 1:3.1.3-4), libjpeg62-turbo-dev (= 1:3.1.3-4), libjxl0.11 (= 0.11.2-5.1), libk5crypto3 (= 1.22.1-3), libkadm5clnt-mit12 (= 1.22.1-3), libkadm5srv-mit12 (= 1.22.1-3), libkdb5-10t64 (= 1.22.1-3), libkeyutils1 (= 1.6.3-6+b2), libkrb5-3 (= 1.22.1-3), libkrb5-dev (= 1.22.1-3), libkrb5support0 (= 1.22.1-3), liblapack-dev (= 3.12.1-8), liblapack3 (= 3.12.1-8), liblcms2-2 (= 2.19.1-1), libldap-dev (= 2.6.14+dfsg-2), libldap2 (= 2.6.14+dfsg-2), liblerc-dev (= 4.2.0+ds-1), liblerc4 (= 4.2.0+ds-1), libllvm21 (= 1:21.1.8-14), libllvm22 (= 1:22.1.8-3), liblqr-1-0 (= 0.4.2-2.2+b1), liblsan0 (= 16.2.0-3), libltdl7 (= 2.6.2-3), liblzma-dev (= 5.8.4-1), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmagickcore-7.q16-10 (= 8:7.1.2.33+dfsg1-1), libmagickwand-7.q16-10 (= 8:7.1.2.33+dfsg1-1), libmd0 (= 1.3.0-1), libmd4c0 (= 0.5.3-1), libmount1 (= 2.42.4-1), libmp3lame0 (= 4.0-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libmpg123-0t64 (= 1.33.7-1), libmtdev1t64 (= 1.1.7-1+b2), libncurses-dev (= 6.6+20260608-2), libncurses6 (= 6.6+20260608-2), libncursesw6 (= 6.6+20260608-2), libnettle8t64 (= 3.10.2-1+b1), libnghttp2-14 (= 1.70.0-1), libnghttp2-dev (= 1.70.0-1), libnghttp3-9 (= 1.17.0-1), libnghttp3-dev (= 1.17.0-1), libngtcp2-16 (= 1.24.0-1), libngtcp2-crypto-gnutls8 (= 1.24.0-1), libngtcp2-crypto-ossl-dev (= 1.24.0-1), libngtcp2-crypto-ossl0 (= 1.24.0-1), libngtcp2-dev (= 1.24.0-1), libnl-3-200 (= 3.12.0-2+b1), libnl-route-3-200 (= 3.12.0-2+b1), libnuma1 (= 2.0.19-1+b2), libogg0 (= 1.3.6-2+b1), libopengl-dev (= 1.7.0-3+b1), libopengl0 (= 1.7.0-3+b1), libopenjp2-7 (= 2.5.4-1.1), libopenmpi40 (= 6.0.0~rc2-2), libopus0 (= 1.6.1-1+b1), libp11-kit-dev (= 0.26.5-1), libp11-kit0 (= 0.26.5-1), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpango-1.0-0 (= 1.58.2-1), libpangocairo-1.0-0 (= 1.58.2-1), libpangoft2-1.0-0 (= 1.58.2-1), libpciaccess0 (= 0.19-2), libpcre2-16-0 (= 10.48-3.1), libpcre2-8-0 (= 10.48-3.1), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libpixman-1-0 (= 0.46.4-1+b2), libpkgconf7 (= 2.5.1-4), libpmix2t64 (= 7.0.0~rc1-2), libpng16-16t64 (= 1.6.59-1), libportaudio2 (= 19.7.0-1+b1), libproc2-1 (= 2:4.0.7-1), libproxy1v5 (= 0.5.12-3), libpsl-dev (= 0.23.3-1), libpsl5t64 (= 0.23.3-1), libpsm2-2 (= 11.2.185-2.1), libpython3-stdlib (= 3.14.7-3), libpython3.14-minimal (= 3.14.8-1), libpython3.14-stdlib (= 3.14.8-1), libqhull-r8.0 (= 2020.2-9), libqrupdate1 (= 1.2.0-1), libqscintilla2-qt6-15 (= 2.14.1+dfsg-4), libqscintilla2-qt6-l10n (= 2.14.1+dfsg-4), libqt5concurrent5t64 (= 5.15.19+dfsg-5), libqt5core5t64 (= 5.15.19+dfsg-5), libqt5dbus5t64 (= 5.15.19+dfsg-5), libqt5gui5t64 (= 5.15.19+dfsg-5), libqt5network5t64 (= 5.15.19+dfsg-5), libqt5opengl5-dev (= 5.15.19+dfsg-5), libqt5opengl5t64 (= 5.15.19+dfsg-5), libqt5printsupport5t64 (= 5.15.19+dfsg-5), libqt5sql5t64 (= 5.15.19+dfsg-5), libqt5svg5 (= 5.15.19-2), libqt5svg5-dev (= 5.15.19-2), libqt5test5t64 (= 5.15.19+dfsg-5), libqt5widgets5t64 (= 5.15.19+dfsg-5), libqt5xml5t64 (= 5.15.19+dfsg-5), libqt6core5compat6 (= 6.11.2-2), libqt6core6t64 (= 6.11.2+dfsg-6), libqt6dbus6 (= 6.11.2+dfsg-6), libqt6gui6 (= 6.11.2+dfsg-6), libqt6help6 (= 6.11.2-2), libqt6network6 (= 6.11.2+dfsg-6), libqt6opengl6 (= 6.11.2+dfsg-6), libqt6openglwidgets6 (= 6.11.2+dfsg-6), libqt6printsupport6 (= 6.11.2+dfsg-6), libqt6sql6 (= 6.11.2+dfsg-6), libqt6widgets6 (= 6.11.2+dfsg-6), libqt6xml6 (= 6.11.2+dfsg-6), libquadmath0 (= 16.2.0-3), libraw25 (= 0.22.1-1), librdmacm1t64 (= 65.0-1.1), libreadline-dev (= 8.3-4), libreadline8t64 (= 8.3-4), librtmp-dev (= 2.6-1), librtmp1 (= 2.6-1), libsamplerate0 (= 0.2.2-4+b3), libsasl2-2 (= 2.1.28+dfsg1-12), libsasl2-modules-db (= 2.1.28+dfsg1-12), libseccomp2 (= 2.6.1-1+b1), libselinux1 (= 3.11-2.1), libsensors-config (= 1:3.6.2-2), libsensors5 (= 1:3.6.2-2+b2), libsframe3 (= 2.47.50.20261021-1), libsharpyuv-dev (= 1.6.0-0.1), libsharpyuv0 (= 1.6.0-0.1), libsm6 (= 2:1.2.6-1+b2), libsmartcols1 (= 2.42.4-1), libsndfile1 (= 1.2.2-4+b1), libspqr4 (= 1:7.14.1+dfsg-1), libsqlite3-0 (= 3.53.4-2), libssh2-1-dev (= 1.11.1-6), libssh2-1t64 (= 1.11.1-6), libssl-dev (= 3.6.5-1), libssl3t64 (= 3.6.5-1), libstdc++-16-dev (= 16.2.0-3), libstdc++6 (= 16.2.0-3), libsuitesparseconfig7 (= 1:7.14.1+dfsg-1), libsystemd-shared (= 262.1-1), libsystemd0 (= 262.1-1), libsz2 (= 1.1.7-1), libtasn1-6 (= 4.21.0-2+b1), libtasn1-6-dev (= 4.21.0-2+b1), libtext-charwidth-perl (= 0.04-12+b1), libtext-unidecode-perl (= 1.30-3), libtext-wrapi18n-perl (= 0.06-11), libthai-data (= 0.1.30-3), libthai0 (= 0.1.30-3), libtiff-dev (= 4.7.2-1), libtiff6 (= 4.7.2-1), libtiffxx6 (= 4.7.2-1), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-3), libts0t64 (= 1.22-1.1+b2), libtsan2 (= 16.2.0-3), libubsan1 (= 16.2.0-3), libucc1 (= 1.9.0-2), libuchardet0 (= 0.0.8-2+b2), libucx0 (= 1.22.0-3), libudev1 (= 262.1-1), libumfpack6 (= 1:7.14.1+dfsg-1), libunbound8 (= 1.26.2-1), libunistring-dev (= 1.4.2-1), libunistring5 (= 1.4.2-1), liburing2 (= 2.15-1), libuuid1 (= 2.42.4-1), libvorbis0a (= 1.3.7-3+b2), libvorbisenc2 (= 1.3.7-3+b2), libvulkan-dev (= 1.4.363.0-1), libvulkan1 (= 1.4.363.0-1), libwacom-common (= 2.20.0-1), libwacom9 (= 2.20.0-1), libwayland-client0 (= 1.26.0-1), libwayland-cursor0 (= 1.26.0-1), libwayland-egl1 (= 1.26.0-1), libwebp-dev (= 1.6.0-0.1), libwebp7 (= 1.6.0-0.1), libwebpdecoder3 (= 1.6.0-0.1), libwebpdemux2 (= 1.6.0-0.1), libwebpmux3 (= 1.6.0-0.1), libwmflite-0.2-7 (= 0.2.14-1), libx11-6 (= 2:1.8.13-1), libx11-data (= 2:1.8.13-1), libx11-dev (= 2:1.8.13-1), libx11-xcb1 (= 2:1.8.13-1), libxau-dev (= 1:1.0.11-1+b2), libxau6 (= 1:1.0.11-1+b2), libxcb-cursor0 (= 0.1.6-1), libxcb-dri3-0 (= 1.17.0-2+b2), libxcb-glx0 (= 1.17.0-2+b2), libxcb-icccm4 (= 0.4.2-1+b2), libxcb-image0 (= 0.4.0-2+b3), libxcb-keysyms1 (= 0.4.1-1+b2), libxcb-present0 (= 1.17.0-2+b2), libxcb-randr0 (= 1.17.0-2+b2), libxcb-render-util0 (= 0.3.10-1+b2), libxcb-render0 (= 1.17.0-2+b2), libxcb-shape0 (= 1.17.0-2+b2), libxcb-shm0 (= 1.17.0-2+b2), libxcb-sync1 (= 1.17.0-2+b2), libxcb-util1 (= 0.4.1-1+b2), libxcb-xfixes0 (= 1.17.0-2+b2), libxcb-xinerama0 (= 1.17.0-2+b2), libxcb-xinput0 (= 1.17.0-2+b2), libxcb-xkb1 (= 1.17.0-2+b2), libxcb1 (= 1.17.0-2+b2), libxcb1-dev (= 1.17.0-2+b2), libxcursor1 (= 1:1.2.3-1+b2), libxdmcp-dev (= 1:1.1.5-2+b1), libxdmcp6 (= 1:1.1.5-2+b1), libxext-dev (= 2:1.3.4-1+b4), libxext6 (= 2:1.3.4-1+b4), libxfixes3 (= 1:6.0.0-2+b5), libxinerama1 (= 2:1.1.4-3+b5), libxkbcommon-x11-0 (= 1.13.1-1), libxkbcommon0 (= 1.13.1-1), libxml-libxml-perl (= 2.0207+dfsg+really+2.0134-8+b1), libxml-namespacesupport-perl (= 1.12-2), libxml-sax-base-perl (= 1.09-3), libxml-sax-perl (= 1.02+dfsg-5), libxml2-16 (= 2.15.4+dfsg-1), libxnvctrl0 (= 535.171.04-1+b3), libxrender1 (= 1:0.9.12-1+b2), libxshmfence1 (= 1.3.3-1+b2), libxxf86vm1 (= 1:1.1.4-2+b1), libz3-4 (= 4.13.3-1.1), libze1 (= 1.32.0-1), libzstd-dev (= 1.5.7+dfsg-4), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.2.11-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), matlab-support-dev (= 0.5), mawk (= 1.3.4.20260302-2), media-types (= 14.0.0), mesa-libgallium (= 26.2.5-1), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), netbase (= 6.6), nettle-dev (= 3.10.2-1+b1), ocl-icd-libopencl1 (= 2.3.4-1+b1), octave (= 11.3.0-1+b1), octave-common (= 11.3.0-1), octave-dev (= 11.3.0-1+b1), openssl-provider-legacy (= 3.6.5-1), patch (= 2.8-2), pci.ids (= 0.0~2026.09.23-1), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), procps (= 2:4.0.7-1), python3 (= 3.14.7-3), python3-minimal (= 3.14.7-3), python3.14 (= 3.14.8-1), python3.14-minimal (= 3.14.8-1), qt5-qmake (= 5.15.19+dfsg-5), qt5-qmake-bin (= 5.15.19+dfsg-5), qtbase5-dev (= 5.15.19+dfsg-5), qtbase5-dev-tools (= 5.15.19+dfsg-5), qtchooser (= 66-2), readline-common (= 8.3-4), sed (= 4.9-3), sensible-utils (= 0.0.26), shared-mime-info (= 2.4-5+b3), systemd (= 262.1-1), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-6), tex-common (= 6.21), texinfo (= 7.3-2), texinfo-lib (= 7.3-2+b1), tzdata (= 2026e-1), ucf (= 3.0056), util-linux (= 2.42.4-1), x11-common (= 1:7.7+26), x11proto-dev (= 2025.1-1), xkb-data (= 2.48-1), xorg-sgml-doctools (= 1:1.12.1-1), xtrans-dev (= 1.6.0-1), xz-utils (= 5.8.4-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1792624800" +------------------------------------------------------------------------------+ | Package contents Sun, 25 Oct 2026 01:33:07 +0000 | +------------------------------------------------------------------------------+ mrtrix3-dbgsym_3.0.8-4_amd64.deb -------------------------------- new Debian package, version 2.0. size 691741548 bytes: control archive=5472 bytes. 4965 bytes, 12 lines control 11978 bytes, 113 lines md5sums Package: mrtrix3-dbgsym Source: mrtrix3 Version: 3.0.8-4 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 711380 Depends: mrtrix3 (= 3.0.8-4) Section: debug Priority: optional Description: debug symbols for mrtrix3 Build-Ids: 023bea17676cc84473c93bc4f72b91645d3a27c1 07f89935f24aac8b3ddac129b1f55a4428309b4a 0b7b579b55a0ea166aa797bc5320c8d94548ed98 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libfftw3-double3 (>= 3.3.11), libgcc-s1 (>= 4.0), libgl1, libgomp1 (>= 4.9), libqt5core5t64 (>= 5.15.1), libqt5gui5t64 (>= 5.11.0~rc1) | libqt5gui5-gles (>= 5.11.0~rc1), libqt5network5t64 (>= 5.0.2), libqt5widgets5t64 (>= 5.15.1), libstdc++6 (>= 14), libtiff6 (>= 4.0.3), zlib1g (>= 1:1.1.4) Recommends: python3-numpy Suggests: matlab-support, mrtrix3-doc, octave Conflicts: mrtrix Section: science Priority: optional Homepage: https://www.mrtrix.org Description: diffusion-weighted MRI white matter tractography Set of tools to perform diffusion-weighted MRI white matter tractography of the brain in the presence of crossing fibres, using Constrained Spherical Deconvolution, and a probabilisitic streamlines algorithm. Magnetic resonance images in DICOM, ANALYZE, or uncompressed NIfTI format are supported. Commands: 5tt2gmwmi, 5tt2vis, 5ttcheck, 5ttedit, 5ttgen, afdconnectivity, amp2response, amp2sh, blend, connectome2tck, connectomeedit, connectomestats, convert_bruker, dcmedit, dcminfo, dirflip, dirgen, dirmerge, dirorder, dirstat, dwi2adc, dwi2fod, dwi2mask, dwi2response, dwi2tensor, dwibiascorrect, dwicat, dwidenoise, dwiextract, dwifslpreproc, dwigradcheck, dwinormalise, dwishellmath, fixel2peaks, fixel2sh, fixel2tsf, fixel2voxel, fixelcfestats, fixelconnectivity, fixelconvert, fixelcorrespondence, fixelcrop, fixelfilter, fixelreorient, fod2dec, fod2fixel, for_each, gen_scheme, label2colour, label2mesh, labelconvert, labelsgmfix, labelstats, maskdump, maskfilter, mesh2voxel, meshconvert, meshfilter, mraverageheader, mrcalc, mrcat, mrcentroid, mrcheckerboardmask, mrclusterstats, mrcolour, mrconvert, mrdegibbs, mrdump, mredit, mrfilter, mrgrid, mrhistmatch, mrhistogram, mrinfo, mrmath, mrmetric, mrregister, mrstats, mrthreshold, mrtransform, mrtrix3.py, mrtrix_cleanup, mrview, mtnormalise, notfound, peaks2amp, peaks2fixel, population_template, responsemean, sh2amp, sh2peaks, sh2power, sh2response, shbasis, shconv, shview, tck2connectome, tck2fixel, tckconvert, tckdfc, tckedit, tckgen, tckglobal, tckinfo, tckmap, tckresample, tcksample, tcksift, tcksift2, tckstats, tcktransform, tensor2metric, transformcalc, transformcompose, transformconvert, tsfdivide, tsfinfo, tsfmult, tsfsmooth, tsfthreshold, tsfvalidate, vectorstats, voxel2fixel, voxel2mesh, warp2metric, warpconvert, warpcorrect, warpinit, warpinvert drwxr-xr-x root/root 0 2026-10-21 23:20 ./ drwxr-xr-x root/root 0 2026-10-21 23:20 ./usr/ drwxr-xr-x root/root 0 2026-10-21 23:20 ./usr/bin/ lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/5tt2gmwmi -> ../lib/mrtrix3/bin/5tt2gmwmi lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/5tt2vis -> ../lib/mrtrix3/bin/5tt2vis lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/5ttcheck -> ../lib/mrtrix3/bin/5ttcheck lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/5ttedit -> ../lib/mrtrix3/bin/5ttedit lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/5ttgen -> ../lib/mrtrix3/bin/5ttgen lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/afdconnectivity -> ../lib/mrtrix3/bin/afdconnectivity lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/amp2response -> ../lib/mrtrix3/bin/amp2response lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/amp2sh -> ../lib/mrtrix3/bin/amp2sh lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/blend -> ../lib/mrtrix3/bin/blend lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/connectome2tck -> ../lib/mrtrix3/bin/connectome2tck lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/connectomeedit -> ../lib/mrtrix3/bin/connectomeedit lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/connectomestats -> ../lib/mrtrix3/bin/connectomestats lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/convert_bruker -> ../lib/mrtrix3/bin/convert_bruker lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dcmedit -> ../lib/mrtrix3/bin/dcmedit lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dcminfo -> ../lib/mrtrix3/bin/dcminfo lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dirflip -> ../lib/mrtrix3/bin/dirflip lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dirgen -> ../lib/mrtrix3/bin/dirgen lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dirmerge -> ../lib/mrtrix3/bin/dirmerge lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dirorder -> ../lib/mrtrix3/bin/dirorder lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dirstat -> ../lib/mrtrix3/bin/dirstat lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dwi2adc -> ../lib/mrtrix3/bin/dwi2adc lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dwi2fod -> ../lib/mrtrix3/bin/dwi2fod lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dwi2mask -> ../lib/mrtrix3/bin/dwi2mask lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dwi2response -> ../lib/mrtrix3/bin/dwi2response lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dwi2tensor -> ../lib/mrtrix3/bin/dwi2tensor lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dwibiascorrect -> ../lib/mrtrix3/bin/dwibiascorrect lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dwicat -> ../lib/mrtrix3/bin/dwicat lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dwidenoise -> ../lib/mrtrix3/bin/dwidenoise lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dwiextract -> ../lib/mrtrix3/bin/dwiextract lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dwifslpreproc -> ../lib/mrtrix3/bin/dwifslpreproc lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dwigradcheck -> ../lib/mrtrix3/bin/dwigradcheck lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dwinormalise -> ../lib/mrtrix3/bin/dwinormalise lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/dwishellmath -> ../lib/mrtrix3/bin/dwishellmath lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/fixel2peaks -> ../lib/mrtrix3/bin/fixel2peaks lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/fixel2sh -> ../lib/mrtrix3/bin/fixel2sh lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/fixel2tsf -> ../lib/mrtrix3/bin/fixel2tsf lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/fixel2voxel -> ../lib/mrtrix3/bin/fixel2voxel lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/fixelcfestats -> ../lib/mrtrix3/bin/fixelcfestats lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/fixelconnectivity -> ../lib/mrtrix3/bin/fixelconnectivity lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/fixelconvert -> ../lib/mrtrix3/bin/fixelconvert lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/fixelcorrespondence -> ../lib/mrtrix3/bin/fixelcorrespondence lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/fixelcrop -> ../lib/mrtrix3/bin/fixelcrop lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/fixelfilter -> ../lib/mrtrix3/bin/fixelfilter lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/fixelreorient -> ../lib/mrtrix3/bin/fixelreorient lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/fod2dec -> ../lib/mrtrix3/bin/fod2dec lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/fod2fixel -> ../lib/mrtrix3/bin/fod2fixel lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/for_each -> ../lib/mrtrix3/bin/for_each lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/gen_scheme -> ../lib/mrtrix3/bin/gen_scheme lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/label2colour -> ../lib/mrtrix3/bin/label2colour lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/label2mesh -> ../lib/mrtrix3/bin/label2mesh lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/labelconvert -> ../lib/mrtrix3/bin/labelconvert lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/labelsgmfix -> ../lib/mrtrix3/bin/labelsgmfix lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/labelstats -> ../lib/mrtrix3/bin/labelstats lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/maskdump -> ../lib/mrtrix3/bin/maskdump lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/maskfilter -> ../lib/mrtrix3/bin/maskfilter lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mesh2voxel -> ../lib/mrtrix3/bin/mesh2voxel lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/meshconvert -> ../lib/mrtrix3/bin/meshconvert lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/meshfilter -> ../lib/mrtrix3/bin/meshfilter lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mraverageheader -> ../lib/mrtrix3/bin/mraverageheader lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrcalc -> ../lib/mrtrix3/bin/mrcalc lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrcat -> ../lib/mrtrix3/bin/mrcat lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrcentroid -> ../lib/mrtrix3/bin/mrcentroid lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrcheckerboardmask -> ../lib/mrtrix3/bin/mrcheckerboardmask lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrclusterstats -> ../lib/mrtrix3/bin/mrclusterstats lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrcolour -> ../lib/mrtrix3/bin/mrcolour lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrconvert -> ../lib/mrtrix3/bin/mrconvert lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrdegibbs -> ../lib/mrtrix3/bin/mrdegibbs lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrdump -> ../lib/mrtrix3/bin/mrdump lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mredit -> ../lib/mrtrix3/bin/mredit lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrfilter -> ../lib/mrtrix3/bin/mrfilter lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrgrid -> ../lib/mrtrix3/bin/mrgrid lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrhistmatch -> ../lib/mrtrix3/bin/mrhistmatch lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrhistogram -> ../lib/mrtrix3/bin/mrhistogram lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrinfo -> ../lib/mrtrix3/bin/mrinfo lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrmath -> ../lib/mrtrix3/bin/mrmath lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrmetric -> ../lib/mrtrix3/bin/mrmetric lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrregister -> ../lib/mrtrix3/bin/mrregister lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrstats -> ../lib/mrtrix3/bin/mrstats lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrthreshold -> ../lib/mrtrix3/bin/mrthreshold lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrtransform -> ../lib/mrtrix3/bin/mrtransform lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrtrix3.py -> ../lib/mrtrix3/bin/mrtrix3.py lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrtrix_cleanup -> ../lib/mrtrix3/bin/mrtrix_cleanup lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mrview -> ../lib/mrtrix3/bin/mrview lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/mtnormalise -> ../lib/mrtrix3/bin/mtnormalise lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/notfound -> ../lib/mrtrix3/bin/notfound lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/peaks2amp -> ../lib/mrtrix3/bin/peaks2amp lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/peaks2fixel -> ../lib/mrtrix3/bin/peaks2fixel lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/population_template -> ../lib/mrtrix3/bin/population_template lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/responsemean -> ../lib/mrtrix3/bin/responsemean lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/sh2amp -> ../lib/mrtrix3/bin/sh2amp lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/sh2peaks -> ../lib/mrtrix3/bin/sh2peaks lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/sh2power -> ../lib/mrtrix3/bin/sh2power lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/sh2response -> ../lib/mrtrix3/bin/sh2response lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/shbasis -> ../lib/mrtrix3/bin/shbasis lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/shconv -> ../lib/mrtrix3/bin/shconv lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/shview -> ../lib/mrtrix3/bin/shview lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tck2connectome -> ../lib/mrtrix3/bin/tck2connectome lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tck2fixel -> ../lib/mrtrix3/bin/tck2fixel lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tckconvert -> ../lib/mrtrix3/bin/tckconvert lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tckdfc -> ../lib/mrtrix3/bin/tckdfc lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tckedit -> ../lib/mrtrix3/bin/tckedit lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tckgen -> ../lib/mrtrix3/bin/tckgen lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tckglobal -> ../lib/mrtrix3/bin/tckglobal lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tckinfo -> ../lib/mrtrix3/bin/tckinfo lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tckmap -> ../lib/mrtrix3/bin/tckmap lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tckresample -> ../lib/mrtrix3/bin/tckresample lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tcksample -> ../lib/mrtrix3/bin/tcksample lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tcksift -> ../lib/mrtrix3/bin/tcksift lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tcksift2 -> ../lib/mrtrix3/bin/tcksift2 lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tckstats -> ../lib/mrtrix3/bin/tckstats lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tcktransform -> ../lib/mrtrix3/bin/tcktransform lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tensor2metric -> ../lib/mrtrix3/bin/tensor2metric lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/transformcalc -> ../lib/mrtrix3/bin/transformcalc lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/transformcompose -> ../lib/mrtrix3/bin/transformcompose lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/transformconvert -> ../lib/mrtrix3/bin/transformconvert lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tsfdivide -> ../lib/mrtrix3/bin/tsfdivide lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tsfinfo -> ../lib/mrtrix3/bin/tsfinfo lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tsfmult -> ../lib/mrtrix3/bin/tsfmult lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tsfsmooth -> ../lib/mrtrix3/bin/tsfsmooth lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tsfthreshold -> ../lib/mrtrix3/bin/tsfthreshold lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/tsfvalidate -> ../lib/mrtrix3/bin/tsfvalidate lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/vectorstats -> ../lib/mrtrix3/bin/vectorstats lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/voxel2fixel -> ../lib/mrtrix3/bin/voxel2fixel lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/voxel2mesh -> ../lib/mrtrix3/bin/voxel2mesh lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/warp2metric -> ../lib/mrtrix3/bin/warp2metric lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/warpconvert -> ../lib/mrtrix3/bin/warpconvert lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/warpcorrect -> ../lib/mrtrix3/bin/warpcorrect lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/warpinit -> ../lib/mrtrix3/bin/warpinit lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/bin/warpinvert -> ../lib/mrtrix3/bin/warpinvert drwxr-xr-x root/root 0 2026-10-21 23:20 ./usr/lib/ drwxr-xr-x root/root 0 2026-10-21 23:20 ./usr/lib/mrtrix3/ drwxr-xr-x root/root 0 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/ -rwxr-xr-x root/root 272728 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/5tt2gmwmi -rwxr-xr-x root/root 264536 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/5tt2vis -rwxr-xr-x root/root 260440 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/5ttcheck -rwxr-xr-x root/root 276824 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/5ttedit -rwxr-xr-x root/root 3734 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/5ttgen -rwxr-xr-x root/root 1178184 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/afdconnectivity -rwxr-xr-x root/root 342296 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/amp2response -rwxr-xr-x root/root 444704 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/amp2sh -rwxr-xr-x root/root 2400 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/blend -rwxr-xr-x root/root 621000 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/connectome2tck -rwxr-xr-x root/root 219480 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/connectomeedit -rwxr-xr-x root/root 354624 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/connectomestats -rwxr-xr-x root/root 4467 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/convert_bruker -rwxr-xr-x root/root 55560 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dcmedit -rwxr-xr-x root/root 43272 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dcminfo -rwxr-xr-x root/root 133400 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dirflip -rwxr-xr-x root/root 166200 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dirgen -rwxr-xr-x root/root 96520 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dirmerge -rwxr-xr-x root/root 207112 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dirorder -rwxr-xr-x root/root 141592 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dirsplit -rwxr-xr-x root/root 219408 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dirstat -rwxr-xr-x root/root 215328 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dwi2adc -rwxr-xr-x root/root 641312 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dwi2fod -rwxr-xr-x root/root 440600 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dwi2mask -rwxr-xr-x root/root 6403 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dwi2response -rwxr-xr-x root/root 252184 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dwi2tensor -rwxr-xr-x root/root 3558 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dwibiascorrect -rwxr-xr-x root/root 8236 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dwicat -rwxr-xr-x root/root 1104152 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dwidenoise -rwxr-xr-x root/root 153880 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dwiextract -rwxr-xr-x root/root 87478 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dwifslpreproc -rwxr-xr-x root/root 9021 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dwigradcheck -rwxr-xr-x root/root 2130 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dwinormalise -rwxr-xr-x root/root 4030 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/dwishellmath -rwxr-xr-x root/root 198952 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/fixel2peaks -rwxr-xr-x root/root 215336 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/fixel2sh -rwxr-xr-x root/root 830056 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/fixel2tsf -rwxr-xr-x root/root 629232 2026-10-21 23:20 ./usr/lib/mrtrix3/bin/fixel2voxel 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-> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/tckinfo.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/tckmap.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/tckresample.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/tcksample.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/tcksift.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/tcksift2.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/tckstats.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/tcktransform.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/tensor2metric.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/transformcalc.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/transformcompose.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/transformconvert.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/tsfdivide.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/tsfinfo.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/tsfmult.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/tsfsmooth.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/tsfthreshold.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/tsfvalidate.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/vectorstats.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/voxel2fixel.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/voxel2mesh.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/warp2metric.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/warpconvert.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/warpcorrect.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/warpinit.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/man/man1/warpinvert.1.gz -> mrtrix3.1.gz drwxr-xr-x root/root 0 2026-10-21 23:20 ./usr/share/matlab/ drwxr-xr-x root/root 0 2026-10-21 23:20 ./usr/share/matlab/site/ drwxr-xr-x root/root 0 2026-10-21 23:20 ./usr/share/matlab/site/m/ lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/matlab/site/m/mrtrix -> ../../../mrtrix3/matlab drwxr-xr-x root/root 0 2026-10-21 23:20 ./usr/share/mrtrix3/ drwxr-xr-x root/root 0 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/ drwxr-xr-x root/root 0 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/private/ -rw-r--r-- root/root 1002 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/private/add_field.m -rw-r--r-- root/root 3499 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/read_mrtrix.m -rw-r--r-- root/root 2689 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/read_mrtrix_tracks.m -rw-r--r-- root/root 2579 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/read_mrtrix_tsf.m -rw-r--r-- root/root 5065 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/write_mrtrix.m -rw-r--r-- root/root 2090 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/write_mrtrix_tracks.m -rw-r--r-- root/root 2070 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/write_mrtrix_tsf.m drwxr-xr-x root/root 0 2026-10-21 23:20 ./usr/share/octave/ drwxr-xr-x root/root 0 2026-10-21 23:20 ./usr/share/octave/site/ drwxr-xr-x root/root 0 2026-10-21 23:20 ./usr/share/octave/site/m/ lrwxrwxrwx root/root 0 2026-10-21 23:20 ./usr/share/octave/site/m/mrtrix -> ../../../mrtrix3/matlab drwxr-xr-x root/root 0 2026-10-21 23:20 ./usr/share/pixmaps/ -rw-r--r-- root/root 9782 2026-10-21 23:20 ./usr/share/pixmaps/mrtrix.png +------------------------------------------------------------------------------+ | Post Build Sun, 25 Oct 2026 01:33:13 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sun, 25 Oct 2026 01:33:13 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sun, 25 Oct 2026 01:33:16 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 8039648 Build-Time: 1616 Distribution: unstable Host Architecture: amd64 Install-Time: 3 Job: /srv/rebuilderd/tmp/rebuilderdkBZfY5/inputs/mrtrix3_3.0.8-4.dsc Machine Architecture: amd64 Package: mrtrix3 Package-Time: 1627 Source-Version: 3.0.8-4 Space: 8039648 Status: successful Version: 3.0.8-4 -------------------------------------------------------------------------------- Finished at 2026-10-25T01:33:06Z Build needed 00:27:07, 8039648k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdkBZfY5/out checking mrtrix3-dbgsym_3.0.8-4_amd64.deb: size differs for mrtrix3-dbgsym_3.0.8-4_amd64.deb