=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdysqzXk/inputs/mapsembler2_2.2.4+dfsg1-5_amd64.buildinfo Source: mapsembler2 Version: 2.2.4+dfsg1-5 rebuilderd-worker node: osuosl41-amd64 +------------------------------------------------------------------------------+ | Downloading sources Wed, 19 Nov 2025 00:41:27 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.5 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [148 kB] Get:7 https://deb.debian.org/debian sid InRelease [176 kB] Get:8 https://deb.debian.org/debian experimental InRelease [82.8 kB] Get:9 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,548 B] Get:10 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:11 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:12 https://deb.debian.org/debian-security trixie-security/main Sources [93.2 kB] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2,788 B] Get:14 https://deb.debian.org/debian trixie-backports/main Sources [86.1 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [1,052 B] Get:16 https://deb.debian.org/debian forky/non-free-firmware Sources [7,408 B] Get:17 https://deb.debian.org/debian forky/main Sources [10.7 MB] Get:18 https://deb.debian.org/debian sid/main Sources [11.2 MB] Get:19 https://deb.debian.org/debian sid/non-free-firmware Sources [9,384 B] Get:20 https://deb.debian.org/debian experimental/non-free-firmware Sources [3,332 B] Get:21 https://deb.debian.org/debian experimental/main Sources [351 kB] Fetched 33.7 MB in 4s (9,422 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/mapsembler2/mapsembler2_2.2.4%2bdfsg1-5.dsc' mapsembler2_2.2.4+dfsg1-5.dsc 2263 SHA256:94e2ef3543e8a8848880d6360c5ea9c7ac841d00f379789a9ab7f1c1be3540ff 'https://deb.debian.org/debian/pool/main/m/mapsembler2/mapsembler2_2.2.4%2bdfsg1.orig.tar.xz' mapsembler2_2.2.4+dfsg1.orig.tar.xz 1369588 SHA256:44b215f922ed34c3a167eb512012792e7d777df17d3dda6a2c4a5a0959e8b824 'https://deb.debian.org/debian/pool/main/m/mapsembler2/mapsembler2_2.2.4%2bdfsg1-5.debian.tar.xz' mapsembler2_2.2.4+dfsg1-5.debian.tar.xz 24464 SHA256:c95261bce826d6105f291638779f3b41ae7e934ff684390dcc49fd58cea343be 44b215f922ed34c3a167eb512012792e7d777df17d3dda6a2c4a5a0959e8b824 mapsembler2_2.2.4+dfsg1.orig.tar.xz c95261bce826d6105f291638779f3b41ae7e934ff684390dcc49fd58cea343be mapsembler2_2.2.4+dfsg1-5.debian.tar.xz 94e2ef3543e8a8848880d6360c5ea9c7ac841d00f379789a9ab7f1c1be3540ff mapsembler2_2.2.4+dfsg1-5.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Wed, 19 Nov 2025 00:41:31 +0000 | +------------------------------------------------------------------------------+ Rebuilding mapsembler2=2.2.4+dfsg1-5 in /srv/rebuilderd/tmp/rebuilderdysqzXk/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdysqzXk/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdysqzXk/inputs/mapsembler2_2.2.4+dfsg1-5_amd64.buildinfo /srv/rebuilderd/tmp/rebuilderdysqzXk/inputs/mapsembler2_2.2.4+dfsg1-5_amd64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/mapsembler2-2.2.4+dfsg1 I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [176 kB] Get:2 http://snapshot.debian.org/archive/debian/20251017T144549Z sid InRelease [207 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 Packages [10.2 MB] Get:4 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 Packages [10.2 MB] Fetched 20.8 MB in 2s (10.9 MB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20251017T144549Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 autopoint all 0.23.1-2 [770 kB] Fetched 770 kB in 0s (59.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp57wrcomk/autopoint_0.23.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 xz-utils amd64 5.8.1-2 [660 kB] Fetched 660 kB in 0s (57.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3a99a9p4/xz-utils_5.8.1-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5 [574 kB] Fetched 574 kB in 0s (44.0 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp81cnhj6b/libgmp10_6.3.0+dfsg-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Fetched 244 kB in 0s (21.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4mxlip7u/gettext-base_0.23.1-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqi3ye8yg/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB] Fetched 32.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz14qn3pa/libacl1_2.3.2-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gzip amd64 1.13-1 [138 kB] Fetched 138 kB in 0s (13.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl5r1jvg_/gzip_1.13-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Fetched 307 kB in 0s (26.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfrd0ub3z/libbrotli1_1.1.0-2+b7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-modules-bin amd64 1.7.0-5 [49.1 kB] Fetched 49.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9qv7or0_/libpam-modules-bin_1.7.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bc amd64 1.07.1-4 [103 kB] Fetched 103 kB in 0s (4660 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5_9ounlb/bc_1.07.1-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Fetched 245 kB in 0s (21.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk1qhneze/libssh2-1t64_1.11.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 openssl-provider-legacy amd64 3.5.4-1 [308 kB] Fetched 308 kB in 0s (27.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1b1v9xwf/openssl-provider-legacy_3.5.4-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libudev1 amd64 258.1-1 [156 kB] Fetched 156 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn1qyzits/libudev1_258.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libzstd1 amd64 1.5.7+dfsg-2 [308 kB] Fetched 308 kB in 0s (25.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcx_m7re3/libzstd1_1.5.7+dfsg-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libdebconfclient0 amd64 0.280 [10.6 kB] Fetched 10.6 kB in 0s (1044 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo0ph8_mn/libdebconfclient0_0.280_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4 [1196 B] Fetched 1196 B in 0s (0 B/s) dpkg-name: info: moved 'g++-x86-64-linux-gnu_4%3a15.2.0-4_amd64.deb' to '/srv/rebuilderd/tmp/tmphd5_5kpv/g++-x86-64-linux-gnu_15.2.0-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libgprofng0 amd64 2.45-7 [869 kB] Fetched 869 kB in 0s (70.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2k2acofw/libgprofng0_2.45-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Fetched 126 kB in 0s (6625 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpydqixr45/krb5-multidev_1.21.3-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Fetched 192 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5g8x1j7v/libelf1t64_0.193-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-4 [24.9 kB] Fetched 24.9 kB in 0s (1066 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6n16dqcq/libhdf5-hl-cpp-310_1.14.5+repack-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4 [1436 B] Fetched 1436 B in 0s (132 kB/s) dpkg-name: info: moved 'gcc-x86-64-linux-gnu_4%3a15.2.0-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpytlktmbu/gcc-x86-64-linux-gnu_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc-dev-bin amd64 2.41-12 [58.2 kB] Fetched 58.2 kB in 0s (5492 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7x1_6t3y/libc-dev-bin_2.41-12_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 liblz4-1 amd64 1.10.0-4 [63.9 kB] Fetched 63.9 kB in 0s (2475 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq0tmw4ej/liblz4-1_1.10.0-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libunbound8 amd64 1.24.0-2 [614 kB] Fetched 614 kB in 0s (28.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5jgkp9nf/libunbound8_1.24.0-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB] Fetched 37.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9lhjz5wc/libbz2-1.0_1.0.8-6_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libgnutls30t64 amd64 3.8.10-2 [1484 kB] Fetched 1484 kB in 0s (92.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvq8bafbb/libgnutls30t64_3.8.10-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Fetched 325 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4xxvh05q/m4_1.4.20-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Fetched 1187 kB in 0s (67.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7043va41/groff-base_1.23.0-9_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libgcc-s1 amd64 15.2.0-4 [71.7 kB] Fetched 71.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptvic9bdw/libgcc-s1_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Fetched 25.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpij6lh1sc/libffi8_3.5.2-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Fetched 326 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqwhdk48o/libkrb5-3_1.21.3-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Fetched 74.8 kB in 0s (7458 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_wqvrp4q/readline-common_8.3-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Fetched 49.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo_bx3seg/libtasn1-6_4.20.0-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.14.5+repack-4 [3327 kB] Fetched 3327 kB in 0s (26.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpctf34cb_/libhdf5-dev_1.14.5+repack-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 perl-base amd64 5.40.1-6 [1666 kB] Fetched 1666 kB in 0s (85.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0s6mun20/perl-base_5.40.1-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Fetched 76.2 kB in 0s (6263 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwp3ene_3/libnghttp2-14_1.64.0-1.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libgcc-15-dev amd64 15.2.0-4 [2719 kB] Fetched 2719 kB in 0s (115 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl197omju/libgcc-15-dev_15.2.0-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libsframe2 amd64 2.45-7 [81.0 kB] Fetched 81.0 kB in 0s (7601 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa9yv840t/libsframe2_2.45-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dpkg-dev all 1.22.21 [1338 kB] Fetched 1338 kB in 0s (74.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzjis_o2y/dpkg-dev_1.22.21_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 grep amd64 3.12-1 [443 kB] Fetched 443 kB in 0s (28.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8s41o_63/grep_3.12-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmp0e59fvyd/libaudit-common_4.1.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Fetched 72.2 kB in 0s (1985 kB/s) dpkg-name: info: moved 'libjpeg-dev_1%3a2.1.5-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpsjzges1p/libjpeg-dev_2.1.5-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dash amd64 0.5.12-12 [98.5 kB] Fetched 98.5 kB in 0s (8974 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbslqjcei/dash_0.5.12-12_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 gcc-14-base amd64 14.3.0-8 [52.1 kB] Fetched 52.1 kB in 0s (1230 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw_dc62pv/gcc-14-base_14.3.0-8_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc6 amd64 2.41-12 [2846 kB] Fetched 2846 kB in 0s (106 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy1w7m_24/libc6_2.41-12_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libattr1 amd64 1:2.5.2-3 [22.9 kB] Fetched 22.9 kB in 0s (2087 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_amd64.deb' to '/srv/rebuilderd/tmp/tmpj_jm1_4l/libattr1_2.5.2-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-4 [47.9 kB] Fetched 47.9 kB in 0s (2740 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl3aim61f/libhdf5-hl-fortran-310_1.14.5+repack-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 g++-15 amd64 15.2.0-4 [23.4 kB] Fetched 23.4 kB in 0s (2327 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyg92i94z/g++-15_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Fetched 1469 kB in 0s (71.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps8et_ezo/man-db_2.13.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Fetched 65.6 kB in 0s (0 B/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-9_amd64.deb' to '/srv/rebuilderd/tmp/tmpe0h_j0fk/libproc2-0_4.0.4-9_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Fetched 658 kB in 0s (58.1 MB/s) dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp_unzf10s/libgmp-dev_6.3.0+dfsg-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Fetched 182 kB in 0s (5805 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaq2h5641/libevent-2.1-7t64_2.1.12-stable-10+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 gcc amd64 4:15.2.0-4 [5160 B] Fetched 5160 B in 0s (483 kB/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp4vxxbfe8/gcc_15.2.0-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libgnutls-dane0t64 amd64 3.8.10-2 [458 kB] Fetched 458 kB in 0s (2815 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp63m_8zxs/libgnutls-dane0t64_3.8.10-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Fetched 92.4 kB in 0s (8485 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0wnytmtl/libdebhelper-perl_13.28_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.12.0-1 [95.5 kB] Fetched 95.5 kB in 0s (1698 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9euiow7b/libnghttp3-dev_1.12.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 gcc-15 amd64 15.2.0-4 [522 kB] Fetched 522 kB in 0s (38.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpybxfppbu/gcc-15_15.2.0-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libcc1-0 amd64 15.2.0-4 [42.7 kB] Fetched 42.7 kB in 0s (4033 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpztle240a/libcc1-0_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Fetched 77.6 kB in 0s (2797 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpelux61u0/libpsl-dev_0.21.2-1.1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtinfo6 amd64 6.5+20250216-2 [348 kB] Fetched 348 kB in 0s (29.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp84_dxx_w/libtinfo6_6.5+20250216-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.5.4-1 [2980 kB] Fetched 2980 kB in 0s (120 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpctye50di/libssl-dev_3.5.4-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Fetched 56.7 kB in 0s (2847 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpij09tuj2/comerr-dev_2.1-1.47.2-3+b3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 diffutils amd64 1:3.10-4 [387 kB] Fetched 387 kB in 0s (2468 kB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpn7ee9y5_/diffutils_3.10-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Fetched 57.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxvgji4qj/libpsl5t64_0.21.2-1.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libtool all 2.5.4-5 [540 kB] Fetched 540 kB in 0s (7561 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsadc4e34/libtool_2.5.4-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.4-2 [23.8 kB] Fetched 23.8 kB in 0s (118 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_402h8b6/libaec0_1.1.4-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc6-dev amd64 2.41-12 [1991 kB] Fetched 1991 kB in 0s (101 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp35aq6btx/libc6-dev_2.41-12_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Fetched 16.1 kB in 0s (901 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu5q5ihlg/libkrb5-dev_1.21.3-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Fetched 19.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprcuhw40b/libsasl2-modules-db_2.1.28+dfsg1-10_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libuuid1 amd64 2.41.2-4 [38.7 kB] Fetched 38.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp03spld16/libuuid1_2.41.2-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 binutils-x86-64-linux-gnu amd64 2.45-7 [1097 kB] Fetched 1097 kB in 0s (78.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp32w8ense/binutils-x86-64-linux-gnu_2.45-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (20.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw4o1aq08/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bzip2 amd64 1.0.8-6 [40.5 kB] Fetched 40.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp83a5rwv9/bzip2_1.0.8-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 base-files amd64 14 [72.9 kB] Fetched 72.9 kB in 0s (7267 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqxey6n2_/base-files_14_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libnettle8t64 amd64 3.10.2-1 [307 kB] Fetched 307 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb1vudqxv/libnettle8t64_3.10.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Fetched 42.5 kB in 0s (1361 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmperz_494w/libkadm5clnt-mit12_1.21.3-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libp11-kit-dev amd64 0.25.9-2 [220 kB] Fetched 220 kB in 0s (4819 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4iys9go0/libp11-kit-dev_0.25.9-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libc-bin amd64 2.41-12 [637 kB] Fetched 637 kB in 0s (47.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfx2ux_7e/libc-bin_2.41-12_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcap2 amd64 1:2.75-10+b1 [28.8 kB] Fetched 28.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libcap2_1%3a2.75-10+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpir4gjlyu/libcap2_2.75-10+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 debianutils amd64 5.23.2 [92.4 kB] Fetched 92.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8xokjb0n/debianutils_5.23.2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libbinutils amd64 2.45-7 [580 kB] Fetched 580 kB in 0s (50.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkyi7wpup/libbinutils_2.45-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libctf0 amd64 2.45-7 [100 kB] Fetched 100 kB in 0s (9918 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9_9p4ju2/libctf0_2.45-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Fetched 443 kB in 0s (38.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8tahtm2k/libp11-kit0_0.25.9-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libhdf5-310 amd64 1.14.5+repack-4 [1448 kB] Fetched 1448 kB in 0s (45.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5zx01i3w/libhdf5-310_1.14.5+repack-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 binutils-common amd64 2.45-7 [2558 kB] Fetched 2558 kB in 0s (105 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxwoudy5o/binutils-common_2.45-7_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libitm1 amd64 15.2.0-4 [26.5 kB] Fetched 26.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdhd019jh/libitm1_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB] Fetched 67.9 kB in 0s (1882 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1mv7fob0/librtmp-dev_2.4+20151223.gitfa8646d.1-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Fetched 88.9 kB in 0s (0 B/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmp530o6g_c/zlib1g_1.3.dfsg+really1.3.1-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB] Fetched 36.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr52kkvx7/libmd0_1.1.0-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ncurses-bin amd64 6.5+20250216-2 [438 kB] Fetched 438 kB in 0s (38.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplbvx5gsr/ncurses-bin_6.5+20250216-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libhogweed6t64 amd64 3.10.2-1 [336 kB] Fetched 336 kB in 0s (30.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsd7kzyi6/libhogweed6t64_3.10.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libcrypt1 amd64 1:4.4.38-1 [90.1 kB] Fetched 90.1 kB in 0s (0 B/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_amd64.deb' to '/srv/rebuilderd/tmp/tmpmkxswq1o/libcrypt1_4.4.38-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Fetched 292 kB in 0s (27.0 MB/s) dpkg-name: info: moved 'libjpeg62-turbo-dev_1%3a2.1.5-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpm29xgqja/libjpeg62-turbo-dev_2.1.5-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libperl5.40 amd64 5.40.1-6 [4341 kB] Fetched 4341 kB in 0s (110 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpusvswh1m/libperl5.40_5.40.1-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3dw5ca9q/debconf_1.5.91_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libatomic1 amd64 15.2.0-4 [9508 B] Fetched 9508 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbrfdudb/libatomic1_15.2.0-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Fetched 54.2 kB in 0s (1869 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyjd7u15l/libkadm5srv-mit12_1.21.3-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 920 kB in 0s (67.9 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb' to '/srv/rebuilderd/tmp/tmpprf95sht/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Fetched 25.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2l8jhdlt/libcom-err2_1.47.2-3+b3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 liblzma5 amd64 5.8.1-2 [310 kB] Fetched 310 kB in 0s (30.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbak4kq0y/liblzma5_5.8.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Fetched 1680 kB in 0s (84.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo5xgfapz/gettext_0.23.1-2+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Fetched 39.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp47l_wc6b/libjansson4_2.14-2+b3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.2-1 [1322 kB] Fetched 1322 kB in 0s (20.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfxr6bptw/nettle-dev_3.10.2-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Fetched 33.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgygemnha/libkrb5support0_1.21.3-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 liblsan0 amd64 15.2.0-4 [1249 kB] Fetched 1249 kB in 0s (76.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprivc5ufa/liblsan0_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Fetched 3836 B in 0s (260 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty96qj3x/libboost-dev_1.83.0.2+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Fetched 135 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb4wgidsz/libncursesw6_6.5+20250216-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dpkg amd64 1.22.21 [1538 kB] Fetched 1538 kB in 0s (79.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl0cpgb11/dpkg_1.22.21_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libstdc++-14-dev amd64 14.3.0-8 [2673 kB] Fetched 2673 kB in 0s (36.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpylnxzs09/libstdc++-14-dev_14.3.0-8_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Fetched 882 kB in 0s (65.5 MB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-9_amd64.deb' to '/srv/rebuilderd/tmp/tmpjs8osr8f/procps_4.0.4-9_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Fetched 349 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpazyx8iax/libarchive13t64_3.7.4-4+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-5 [10.6 MB] Fetched 10.6 MB in 0s (56.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8epk2zt4/libboost1.83-dev_1.83.0-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libgomp1 amd64 15.2.0-4 [140 kB] Fetched 140 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprjpg08yq/libgomp1_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 patch amd64 2.8-2 [134 kB] Fetched 134 kB in 0s (13.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfs5r78ni/patch_2.8-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libubsan1 amd64 15.2.0-4 [1108 kB] Fetched 1108 kB in 0s (70.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg77cudes/libubsan1_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsmartcols1 amd64 2.41.2-4 [145 kB] Fetched 145 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp15fv4r1u/libsmartcols1_2.41.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Fetched 109 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpftywmiun/libmagic1t64_5.46-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Fetched 316 kB in 0s (30.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsm7p82co/libbrotli-dev_1.1.0-2+b7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Fetched 110 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg312_2cy/libidn2-0_2.3.8-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam0g amd64 1.7.0-5 [69.9 kB] Fetched 69.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn84_sf8t/libpam0g_1.7.0-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Fetched 60.0 kB in 0s (2235 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplh4bqc_l/libgssrpc4t64_1.21.3-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB] Fetched 84.7 kB in 0s (4041 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfj6g2ch2/libselinux1_3.8.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Fetched 191 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp171ittpj/libreadline8t64_8.3-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdpkg-perl all 1.22.21 [650 kB] Fetched 650 kB in 0s (50.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppkmzc23s/libdpkg-perl_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 gcc-15-base amd64 15.2.0-4 [52.8 kB] Fetched 52.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprkkyxq4h/gcc-15-base_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc5v74mye/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Fetched 98.5 kB in 0s (8233 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdeqqh65e/bsdextrautils_2.41.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgdbm-compat4t64 amd64 1.26-1 [52.8 kB] Fetched 52.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyejmo5ib/libgdbm-compat4t64_1.26-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Fetched 27.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp93xtsk2f/libngtcp2-crypto-ossl0_1.16.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Fetched 81.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpda5b9vh0/libk5crypto3_1.21.3-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [375 kB] Fetched 375 kB in 0s (35.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp82sbdaoe/libzstd-dev_1.5.7+dfsg-2_amd64.deb' Downloading dependency 1 of 236: autopoint:amd64=0.23.1-2 Downloading dependency 2 of 236: xz-utils:amd64=5.8.1-2 Downloading dependency 3 of 236: libgmp10:amd64=2:6.3.0+dfsg-5 Downloading dependency 4 of 236: gettext-base:amd64=0.23.1-2+b1 Downloading dependency 5 of 236: intltool-debian:amd64=0.35.0+20060710.6 Downloading dependency 6 of 236: libacl1:amd64=2.3.2-2+b1 Downloading dependency 7 of 236: gzip:amd64=1.13-1 Downloading dependency 8 of 236: libbrotli1:amd64=1.1.0-2+b7 Downloading dependency 9 of 236: libpam-modules-bin:amd64=1.7.0-5 Downloading dependency 10 of 236: bc:amd64=1.07.1-4 Downloading dependency 11 of 236: libssh2-1t64:amd64=1.11.1-1 Downloading dependency 12 of 236: openssl-provider-legacy:amd64=3.5.4-1 Downloading dependency 13 of 236: libudev1:amd64=258.1-1 Downloading dependency 14 of 236: libzstd1:amd64=1.5.7+dfsg-2 Downloading dependency 15 of 236: libdebconfclient0:amd64=0.280 Downloading dependency 16 of 236: g++-x86-64-linux-gnu:amd64=4:15.2.0-4 Downloading dependency 17 of 236: libgprofng0:amd64=2.45-7 Downloading dependency 18 of 236: krb5-multidev:amd64=1.21.3-5 Downloading dependency 19 of 236: libelf1t64:amd64=0.193-3 Downloading dependency 20 of 236: libhdf5-hl-cpp-310:amd64=1.14.5+repack-4 Downloading dependency 21 of 236: gcc-x86-64-linux-gnu:amd64=4:15.2.0-4 Downloading dependency 22 of 236: libc-dev-bin:amd64=2.41-12 Downloading dependency 23 of 236: liblz4-1:amd64=1.10.0-4 Downloading dependency 24 of 236: libunbound8:amd64=1.24.0-2 Downloading dependency 25 of 236: libbz2-1.0:amd64=1.0.8-6 Downloading dependency 26 of 236: libgnutls30t64:amd64=3.8.10-2 Downloading dependency 27 of 236: m4:amd64=1.4.20-2 Downloading dependency 28 of 236: groff-base:amd64=1.23.0-9 Downloading dependency 29 of 236: libgcc-s1:amd64=15.2.0-4 Downloading dependency 30 of 236: libffi8:amd64=3.5.2-2 Downloading dependency 31 of 236: libkrb5-3:amd64=1.21.3-5 Downloading dependency 32 of 236: readline-common:amd64=8.3-3 Downloading dependency 33 of 236: libtasn1-6:amd64=4.20.0-2 Downloading dependency 34 of 236: libhdf5-dev:amd64=1.14.5+repack-4 Downloading dependency 35 of 236: perl-base:amd64=5.40.1-6 Downloading dependency 36 of 236: libnghttp2-14:amd64=1.64.0-1.1+b1 Downloading dependency 37 of 236: libgcc-15-dev:amd64=15.2.0-4 Downloading dependency 38 of 236: libsframe2:amd64=2.45-7 Downloading dependency 39 of 236: dpkg-dev:amd64=1.22.21 Downloading dependency 40 of 236: grep:amd64=3.12-1 Downloading dependency 41 of 236: libaudit-common:amd64=1:4.1.2-1 Downloading dependency 42 of 236: libjpeg-dev:amd64=1:2.1.5-4 Downloading dependency 43 of 236: dash:amd64=0.5.12-12 Downloading dependency 44 of 236: gcc-14-base:amd64=14.3.0-8 Downloading dependency 45 of 236: libc6:amd64=2.41-12 Downloading dependency 46 of 236: libattr1:amd64=1:2.5.2-3 Downloading dependency 47 of 236: libhdf5-hl-fortran-310:amd64=1.14.5+repack-4 Downloading dependency 48 of 236: g++-15:amd64=15.2.0-4 Downloading dependency 49 of 236: 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libbinutils:amd64=2.45-7 Downloading dependency 82 of 236: libctf0:amd64=2.45-7 Downloading dependency 83 of 236: libp11-kit0:amd64=0.25.9-2 Downloading dependency 84 of 236: libhdf5-310:amd64=1.14.5+repack-4 Downloading dependency 85 of 236: binutils-common:amd64=2.45-7 Downloading dependency 86 of 236: libitm1:amd64=15.2.0-4 Downloading dependency 87 of 236: librtmp-dev:amd64=2.4+20151223.gitfa8646d.1-3 Downloading dependency 88 of 236: zlib1g:amd64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 89 of 236: libmd0:amd64=1.1.0-2+b1 Downloading dependency 90 of 236: ncurses-bin:amd64=6.5+20250216-2 Downloading dependency 91 of 236: libhogweed6t64:amd64=3.10.2-1 Downloading dependency 92 of 236: libcrypt1:amd64=1:4.4.38-1 Downloading dependency 93 of 236: libjpeg62-turbo-dev:amd64=1:2.1.5-4 Downloading dependency 94 of 236: libperl5.40:amd64=5.40.1-6 Downloading dependency 95 of 236: debconf:amd64=1.5.91 Downloading dependency 96 of 236: libatomic1:amd64=15.2.0-4 Downloading dependency 97 of 236: libkadm5srv-mit12:amd64=1.21.3-5 Downloading dependency 98 of 236: zlib1g-dev:amd64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 99 of 236: libcom-err2:amd64=1.47.2-3+b3 Downloading dependency 100 of 236: liblzma5:amd64=5.8.1-2 Downloading dependency 101 of 236: gettext:amd64=0.23.1-2+b1 Downloading dependency 102 of 236: libjansson4:amd64=2.14-2+b3 Downloading dependency 103 of 236: nettle-dev:amd64=3.10.2-1 Downloading dependency 104 of 236: libkrb5support0:amd64=1.21.3-5 Downloading dependency 105 of 236: liblsan0:amd64=15.2.0-4 Downloading dependency 106 of 236: libboost-dev:amd64=1.83.0.2+b2 Downloading dependency 107 of 236: libncursesw6:amd64=6.5+20250216-2 Downloading dependency 108 of 236: dpkg:amd64=1.22.21 Downloading dependency 109 of 236: libstdc++-14-dev:amd64=14.3.0-8 Downloading dependency 110 of 236: procps:amd64=2:4.0.4-9 Downloading dependency 111 of 236: libarchive13t64:amd64=3.7.4-4+b1 Downloading dependency 112 of 236: libboost1.83-dev:amd64=1.83.0-5 Downloading dependency 113 of 236: libgomp1:amd64=15.2.0-4 Downloading dependency 114 of 236: patch:amd64=2.8-2 Downloading dependency 115 of 236: libubsan1:amd64=15.2.0-4 Downloading dependency 116 of 236: libsmartcols1:amd64=2.41.2-4 Downloading dependency 117 of 236: libmagic1t64:amd64=1:5.46-5 Downloading dependency 118 of 236: libbrotli-dev:amd64=1.1.0-2+b7 Downloading dependency 119 of 236: libidn2-0:amd64=2.3.8-4 Downloading dependency 120 of 236: libpam0g:amd64=1.7.0-5 Downloading dependency 121 of 236: libgssrpc4t64:amd64=1.21.3-5 Downloading dependency 122 of 236: libselinux1:amd64=3.8.1-1 Downloading dependency 123 of 236: libreadline8t64:amd64=8.3-3 Downloading dependency 124 of 236: libdpkg-perl:amd64=1.22.21 Downloading dependency 125 of 236: gcc-15-base:amd64=15.2.0-4 Downloading dependency 126 of 236: libfile-stripnondeterminism-perl:amd64=1.15.0-1 Downloading dependency 127 of 236: bsdextrautils:amd64=2.41.2-4 Downloading dependency 128 of 236: libgdbm-compat4t64:amd64=1.26-1 Downloading dependency 129 of 236: libngtcp2-crypto-ossl0:amd64=1.16.0-1 Downloading dependency 130 of 236: libk5crypto3:amd64=1.21.3-5 Downloading dependency 131 of 236: libzstd-dev:amd64=1.5.7+dfsg-2 Downloading dependency 132 of 236: init-system-helpers:amd64=1.69Get:1 http://deb.debian.org/debian unstable/main amd64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd81v_47h/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libxxhash0 amd64 0.8.3-2 [27.1 kB] Fetched 27.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1n2ktbeg/libxxhash0_0.8.3-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-4 [76.3 MB] Fetched 76.3 MB in 1s (147 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6kaitmbe/cpp-15-x86-64-linux-gnu_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 g++ amd64 4:15.2.0-4 [1344 B] Fetched 1344 B in 0s (0 B/s) dpkg-name: info: moved 'g++_4%3a15.2.0-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpm71zga2l/g++_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Fetched 112 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptq988tyr/libexpat1_2.7.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Fetched 68.5 kB in 0s (6611 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcdm6uu4b/libuchardet0_0.0.8-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Fetched 155 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpavtx0mah/libuv1t64_1.51.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libasan8 amd64 15.2.0-4 [2778 kB] Fetched 2778 kB in 0s (126 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphu1n4t3d/libasan8_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.14.5+repack-4 [26.7 kB] Fetched 26.7 kB in 0s (1681 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8e11il8t/hdf5-helpers_1.14.5+repack-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcap-ng0 amd64 0.8.5-4+b1 [17.6 kB] Fetched 17.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmfon6ysv/libcap-ng0_0.8.5-4+b1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Fetched 338 kB in 0s (31.2 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp_xg8u7rq/libmagic-mgc_5.46-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Fetched 494 kB in 0s (45.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpya760fwu/autoconf_2.72-3.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libhwasan0 amd64 15.2.0-4 [1538 kB] Fetched 1538 kB in 0s (91.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpykyhk4ch/libhwasan0_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Fetched 36.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3lh99mv6/libpkgconf3_1.8.1-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 mawk amd64 1.3.4.20250131-1 [141 kB] Fetched 141 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8wf6pene/mawk_1.3.4.20250131-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpior_zb6p/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Fetched 651 kB in 0s (55.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxefp7qv3/libxml2-16_2.14.6+dfsg-0.1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp amd64 4:15.2.0-4 [1564 B] Fetched 1564 B in 0s (0 B/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp56urjyjz/cpp_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl-dev amd64 1.16.0-1 [28.4 kB] Fetched 28.4 kB in 0s (837 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmsrlbdls/libngtcp2-crypto-ossl-dev_1.16.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libaudit1 amd64 1:4.1.2-1 [60.4 kB] Fetched 60.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp8n0cqr9u/libaudit1_4.1.2-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 ncurses-base all 6.5+20250216-2 [273 kB] Fetched 273 kB in 0s (24.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfh5howzq/ncurses-base_6.5+20250216-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Fetched 194 kB in 0s (17.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy4vst_mz/libldap2_2.6.10+dfsg-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgdbm6t64 amd64 1.26-1 [78.5 kB] Fetched 78.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp79edk_lj/libgdbm6t64_1.26-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Fetched 42.6 kB in 0s (1064 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1g4o44qx/libkdb5-10t64_1.21.3-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Fetched 168 kB in 0s (0 B/s) dpkg-name: info: moved 'libjpeg62-turbo_1%3a2.1.5-4_amd64.deb' to '/srv/rebuilderd/tmp/tmpq8ccltos/libjpeg62-turbo_2.1.5-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4 [5292 B] Fetched 5292 B in 0s (0 B/s) dpkg-name: info: moved 'cpp-x86-64-linux-gnu_4%3a15.2.0-4_amd64.deb' to '/srv/rebuilderd/tmp/tmp94m_yfgj/cpp-x86-64-linux-gnu_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmpc3 amd64 1.3.1-2 [55.8 kB] Fetched 55.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl9imeuu3/libmpc3_1.3.1-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Fetched 136 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp31lsymsx/libngtcp2-16_1.16.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.16.0-1 [193 kB] Fetched 193 kB in 0s (2820 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf15l8b42/libngtcp2-dev_1.16.0-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Fetched 30.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph36r3h0m/pkgconf-bin_1.8.1-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Fetched 89.4 kB in 0s (3458 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpttpw2eyk/libjsoncpp26_1.9.6-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libquadmath0 amd64 15.2.0-4 [145 kB] Fetched 145 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa4lgtfdq/libquadmath0_15.2.0-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 base-passwd amd64 3.6.7 [53.7 kB] Fetched 53.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgt1jl6_0/base-passwd_3.6.7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-modules amd64 1.7.0-5 [179 kB] Fetched 179 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkke4m3nr/libpam-modules_1.7.0-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpcre2-8-0 amd64 10.46-1 [298 kB] Fetched 298 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplipgvtog/libpcre2-8-0_10.46-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Fetched 12.2 MB in 0s (163 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjxmrjbkb/cmake_4.1.1+really3.31.6-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-4 [146 kB] Fetched 146 kB in 0s (5517 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp44u483yc/libhdf5-cpp-310_1.14.5+repack-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB] Fetched 103 kB in 0s (4212 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvffjpsym/libidn2-dev_2.3.8-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Fetched 57.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyldr4jzw/libsasl2-2_2.1.28+dfsg1-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libstdc++6 amd64 15.2.0-4 [738 kB] Fetched 738 kB in 0s (60.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdtjhsabh/libstdc++6_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Fetched 330 kB in 0s (26.9 MB/s) dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-5_amd64.deb' to '/srv/rebuilderd/tmp/tmp3fyp4v38/libgmpxx4ldbl_6.3.0+dfsg-5_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 binutils amd64 2.45-7 [269 kB] Fetched 269 kB in 0s (26.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7en7ed9z/binutils_2.45-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmount1 amd64 2.41.2-4 [211 kB] Fetched 211 kB in 0s (19.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvbpbly7h/libmount1_2.41.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (5892 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6j0lhn8k/autotools-dev_20240727.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libctf-nobfd0 amd64 2.45-7 [167 kB] Fetched 167 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps6lw8tas/libctf-nobfd0_2.45-7_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppwj4r77m/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Fetched 58.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0h1hdyq/librtmp1_2.4+20151223.gitfa8646d.1-3_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (20.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9b1x2qqf/libpam-runtime_1.7.0-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Fetched 9456 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpox5ny5hf/libkeyutils1_1.6.3-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 findutils amd64 4.10.0-3 [700 kB] Fetched 700 kB in 0s (53.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu79da523/findutils_4.10.0-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-4 [81.5 MB] Fetched 81.5 MB in 1s (144 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxmzawk_/g++-15-x86-64-linux-gnu_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 sed amd64 4.9-2 [329 kB] Fetched 329 kB in 0s (30.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmposnibypl/sed_4.9-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Fetched 137 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb8etjv5z/librhash1_1.4.6-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Fetched 43.6 kB in 0s (0 B/s) dpkg-name: info: moved 'file_1%3a5.46-5_amd64.deb' to '/srv/rebuilderd/tmp/tmpwlffk80v/file_5.46-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.4-2 [21.5 kB] Fetched 21.5 kB in 0s (1298 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ianpq9t/libaec-dev_1.1.4-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 sysvinit-utils amd64 3.14-4 [34.1 kB] Fetched 34.1 kB in 0s (3406 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaahu66s_/sysvinit-utils_3.14-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Fetched 2268 kB in 0s (92.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5t851tl3/cmake-data_4.1.1+really3.31.6-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 perl-modules-5.40 all 5.40.1-6 [3019 kB] Fetched 3019 kB in 0s (78.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2dlawk16/perl-modules-5.40_5.40.1-6_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 util-linux amd64 2.41.2-4 [1163 kB] Fetched 1163 kB in 0s (64.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp280t022b/util-linux_2.41.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Fetched 26.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaaqlhuvg/pkgconf_1.8.1-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libisl23 amd64 0.27-1 [659 kB] Fetched 659 kB in 0s (52.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp12uozwq6/libisl23_0.27-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libcurl4-openssl-dev amd64 8.16.0-4 [530 kB] Fetched 530 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptqljp_dp/libcurl4-openssl-dev_8.16.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcppunit-1.15-0 amd64 1.15.1-4+b2 [151 kB] Fetched 151 kB in 0s (3767 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp75xmk5w_/libcppunit-1.15-0_1.15.1-4+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Fetched 941 kB in 0s (67.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp63zx2j11/debhelper_13.28_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-4 [85.6 MB] Fetched 85.6 MB in 0s (173 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnac9cfjh/gcc-15-x86-64-linux-gnu_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk59bz7n3/sensible-utils_0.0.26_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libtsan2 amd64 15.2.0-4 [2491 kB] Fetched 2491 kB in 0s (119 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptco32162/libtsan2_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 hostname amd64 3.25 [11.0 kB] Fetched 11.0 kB in 0s (1020 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp522qutie/hostname_3.25_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 tar amd64 1.35+dfsg-3.1 [815 kB] Fetched 815 kB in 0s (60.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwyeah4qy/tar_1.35+dfsg-3.1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 build-essential amd64 12.12 [4624 B] Fetched 4624 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpll4hb95z/build-essential_12.12_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Fetched 312 kB in 0s (7912 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp25z7ull3/libldap-dev_2.6.10+dfsg-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Fetched 68.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppok_e4v7/libnghttp3-9_1.12.0-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 cpp-15 amd64 15.2.0-4 [1272 B] Fetched 1272 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphg_bo6sg/cpp-15_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libcppunit-dev amd64 1.15.1-4+b2 [208 kB] Fetched 208 kB in 0s (4657 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplz97irum/libcppunit-dev_1.15.1-4+b2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 bash amd64 5.3-1 [1556 kB] Fetched 1556 kB in 0s (96.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplvgq41nx/bash_5.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Fetched 63.3 kB in 0s (5663 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaot9palk/rpcsvc-proto_1.4.3-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libssl3t64 amd64 3.5.4-1 [2446 kB] Fetched 2446 kB in 0s (107 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgeqg_pwb/libssl3t64_3.5.4-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-4 [122 kB] Fetched 122 kB in 0s (3629 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8w2cv9_b/libhdf5-fortran-310_1.14.5+repack-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 linux-libc-dev all 6.16.12-1 [2547 kB] Fetched 2547 kB in 0s (5305 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbtg0n9s9/linux-libc-dev_6.16.12-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 coreutils amd64 9.7-3 [3024 kB] Fetched 3024 kB in 0s (121 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppc1b0p3x/coreutils_9.7-3_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libcurl4t64 amd64 8.16.0-4 [408 kB] Fetched 408 kB in 0s (3463 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_dbiw2zr/libcurl4t64_8.16.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libblkid1 amd64 2.41.2-4 [174 kB] Fetched 174 kB in 0s (16.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf7mm0ax3/libblkid1_2.41.2-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Fetched 42.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq4nbu657/libpipeline1_1.5.8-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-10 [709 kB] Fetched 709 kB in 0s (62.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_m5oulwv/libdb5.3t64_5.3.28+dfsg2-10_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libstdc++-15-dev amd64 15.2.0-4 [2421 kB] Fetched 2421 kB in 0s (105 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe8sm29x4/libstdc++-15-dev_15.2.0-4_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 perl amd64 5.40.1-6 [267 kB] Fetched 267 kB in 0s (22.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9ruzvqc/perl_5.40.1-6_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.4-2 [8108 B] Fetched 8108 B in 0s (300 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi0kc80rb/libsz2_1.1.4-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB] Fetched 117 kB in 0s (4616 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdtd9inpa/libnghttp2-dev_1.64.0-1.1+b1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libgnutls28-dev amd64 3.8.10-2 [1423 kB] Fetched 1423 kB in 0s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk99zvyvl/libgnutls28-dev_3.8.10-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libgcc-14-dev amd64 14.3.0-8 [2670 kB] Fetched 2670 kB in 0s (16.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzggyvv6l/libgcc-14-dev_14.3.0-8_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 automake all 1:1.18.1-2 [877 kB] Fetched 877 kB in 0s (55.1 MB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-2_all.deb' to '/srv/rebuilderd/tmp/tmpc1x_bsvx/automake_1.18.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Fetched 99.2 kB in 0s (4352 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphbkvjlhl/libtasn1-6-dev_4.20.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 make amd64 4.4.1-2 [463 kB] Fetched 463 kB in 0s (35.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ttlp5i6/make_4.4.1-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Fetched 119 kB in 0s (11.2 MB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_amd64.deb' to '/srv/rebuilderd/tmp/tmp54vhkq1a/libcrypt-dev_4.4.38-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libsystemd0 amd64 258.1-1 [467 kB] Fetched 467 kB in 0s (34.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp169cyxg3/libsystemd0_258.1-1_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libgnutls-openssl27t64 amd64 3.8.10-2 [458 kB] Fetched 458 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfdbydldv/libgnutls-openssl27t64_3.8.10-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Fetched 477 kB in 0s (35.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbocrhcwy/libunistring5_1.3-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Fetched 862 kB in 0s (12.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxrf__hk9/libgfortran5_15.2.0-4_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libmpfr6 amd64 4.2.2-2 [742 kB] Fetched 742 kB in 0s (48.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprfzn734k/libmpfr6_4.2.2-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Fetched 108 kB in 0s (8583 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg9q22k3g/dwz_0.16-2_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Fetched 393 kB in 0s (12.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqgb_xsq3/libssh2-1-dev_1.11.1-1_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Fetched 12.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphunk3wgk/dh-autoreconf_21_all.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libseccomp2 amd64 2.6.0-2 [51.7 kB] Fetched 51.7 kB in 0s (4732 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbkrmwjj/libseccomp2_2.6.0-2_amd64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Fetched 138 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeebmkdix/libgssapi-krb5-2_1.21.3-5_amd64.deb' Get:1 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-4 [72.6 kB] Fetched 72.6 kB in 0s (2191 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzjz_tn3r/libhdf5-hl-310_1.14.5+repack-4_amd64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpqydy3e6y/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.0EHstv7z79 as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.0EHstv7z79 127.0.0.1 - - [19/Nov/2025 00:43:18] code 404, message File not found 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:36659 ./ InRelease 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:36659 ./ Release [462 B] 127.0.0.1 - - [19/Nov/2025 00:43:18] code 404, message File not found 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:36659 ./ Release.gpg 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:36659 ./ Packages [294 kB] Fetched 295 kB in 0s (15.0 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./gcc-15-base_15.2.0-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libc6_2.41-12_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libgcc-s1_15.2.0-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./mawk_1.3.4.20250131-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./base-files_14_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libtinfo6_6.5%2b20250216-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./debianutils_5.23.2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./bash_5.3-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libacl1_2.3.2-2%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libattr1_2.5.2-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libcap2_2.75-10%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libgmp10_6.3.0%2bdfsg-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libpcre2-8-0_10.46-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libselinux1_3.8.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libzstd1_1.5.7%2bdfsg-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libssl3t64_3.5.4-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./openssl-provider-legacy_3.5.4-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libsystemd0_258.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./coreutils_9.7-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./dash_0.5.12-12_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./diffutils_3.10-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libbz2-1.0_1.0.8-6_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./liblzma5_5.8.1-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libmd0_1.1.0-2%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./tar_1.35%2bdfsg-3.1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./dpkg_1.22.21_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./findutils_4.10.0-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./grep_3.12-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./gzip_1.13-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./hostname_3.25_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./ncurses-bin_6.5%2b20250216-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libcrypt1_4.4.38-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./perl-base_5.40.1-6_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./sed_4.9-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libaudit-common_4.1.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libcap-ng0_0.8.5-4%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libaudit1_4.1.2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libdb5.3t64_5.3.28%2bdfsg2-10_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./debconf_1.5.91_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libpam0g_1.7.0-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libpam-modules-bin_1.7.0-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libpam-modules_1.7.0-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libpam-runtime_1.7.0-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libblkid1_2.41.2-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libmount1_2.41.2-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libsmartcols1_2.41.2-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libudev1_258.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libuuid1_2.41.2-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./util-linux_2.41.2-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libdebconfclient0_0.280_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./base-passwd_3.6.7_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./init-system-helpers_1.69_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./libc-bin_2.41-12_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./ncurses-base_6.5%2b20250216-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:18] "GET /./sysvinit-utils_3.14-4_amd64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.0EHstv7z79 127.0.0.1 - - [19/Nov/2025 00:43:20] code 404, message File not found 127.0.0.1 - - [19/Nov/2025 00:43:20] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:36659 ./ InRelease 127.0.0.1 - - [19/Nov/2025 00:43:20] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:36659 ./ Release 127.0.0.1 - - [19/Nov/2025 00:43:20] code 404, message File not found 127.0.0.1 - - [19/Nov/2025 00:43:20] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:36659 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.0EHstv7z79 usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [19/Nov/2025 00:43:32] "GET /./libexpat1_2.7.3-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:32] "GET /./sensible-utils_0.0.26_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:32] "GET /./libstdc%2b%2b6_15.2.0-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:32] "GET /./libuchardet0_0.0.8-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:32] "GET /./groff-base_1.23.0-9_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:32] "GET /./bsdextrautils_2.41.2-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:32] "GET /./libgdbm6t64_1.26-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:32] "GET /./libpipeline1_1.5.8-1_amd64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./pkgconf-bin_1.8.1-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./pkgconf_1.8.1-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libnghttp2-dev_1.64.0-1.1%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libnghttp3-dev_1.12.0-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libngtcp2-crypto-ossl-dev_1.16.0-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libngtcp2-dev_1.16.0-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libpsl-dev_0.21.2-1.1%2bb1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libgmpxx4ldbl_6.3.0%2bdfsg-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libgmp-dev_6.3.0%2bdfsg-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libgnutls-dane0t64_3.8.10-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libgnutls-openssl27t64_3.8.10-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libp11-kit-dev_0.25.9-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libtasn1-6-dev_4.20.0-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./nettle-dev_3.10.2-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libgnutls28-dev_3.8.10-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./librtmp-dev_2.4%2b20151223.gitfa8646d.1-3_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libssl-dev_3.5.4-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libssh2-1-dev_1.11.1-1_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libzstd-dev_1.5.7%2bdfsg-2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libcurl4-openssl-dev_8.16.0-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./hdf5-helpers_1.14.5%2brepack-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libhdf5-dev_1.14.5%2brepack-4_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./gcc-14-base_14.3.0-8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libgcc-14-dev_14.3.0-8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libstdc%2b%2b-14-dev_14.3.0-8_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libboost1.83-dev_1.83.0-5_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libboost-dev_1.83.0.2%2bb2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libcppunit-1.15-0_1.15.1-4%2bb2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./libcppunit-dev_1.15.1-4%2bb2_amd64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Nov/2025 00:43:35] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpqydy3e6y/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.0EHstv7z79 Reading package lists... Building dependency tree... Reading state information... autopoint is already the newest version (0.23.1-2). autopoint set to manually installed. xz-utils is already the newest version (5.8.1-2). xz-utils set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5). gettext-base is already the newest version (0.23.1-2+b1). gettext-base set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). gzip is already the newest version (1.13-1). libbrotli1 is already the newest version (1.1.0-2+b7). libbrotli1 set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5). bc is already the newest version (1.07.1-4). bc set to manually installed. libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. openssl-provider-legacy is already the newest version (3.5.4-1). libudev1 is already the newest version (258.1-1). libzstd1 is already the newest version (1.5.7+dfsg-2). libdebconfclient0 is already the newest version (0.280). g++-x86-64-linux-gnu is already the newest version (4:15.2.0-4). g++-x86-64-linux-gnu set to manually installed. libgprofng0 is already the newest version (2.45-7). libgprofng0 set to manually installed. krb5-multidev is already the newest version (1.21.3-5). krb5-multidev set to manually installed. libelf1t64 is already the newest version (0.193-3). libelf1t64 set to manually installed. libhdf5-hl-cpp-310 is already the newest version (1.14.5+repack-4). libhdf5-hl-cpp-310 set to manually installed. gcc-x86-64-linux-gnu is already the newest version (4:15.2.0-4). gcc-x86-64-linux-gnu set to manually installed. libc-dev-bin is already the newest version (2.41-12). libc-dev-bin set to manually installed. liblz4-1 is already the newest version (1.10.0-4). liblz4-1 set to manually installed. libunbound8 is already the newest version (1.24.0-2). libunbound8 set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). libgnutls30t64 is already the newest version (3.8.10-2). libgnutls30t64 set to manually installed. m4 is already the newest version (1.4.20-2). m4 set to manually installed. groff-base is already the newest version (1.23.0-9). groff-base set to manually installed. libgcc-s1 is already the newest version (15.2.0-4). libffi8 is already the newest version (3.5.2-2). libffi8 set to manually installed. libkrb5-3 is already the newest version (1.21.3-5). libkrb5-3 set to manually installed. readline-common is already the newest version (8.3-3). readline-common set to manually installed. libtasn1-6 is already the newest version (4.20.0-2). libtasn1-6 set to manually installed. libhdf5-dev is already the newest version (1.14.5+repack-4). libhdf5-dev set to manually installed. perl-base is already the newest version (5.40.1-6). libnghttp2-14 is already the newest version (1.64.0-1.1+b1). libnghttp2-14 set to manually installed. libgcc-15-dev is already the newest version (15.2.0-4). libgcc-15-dev set to manually installed. libsframe2 is already the newest version (2.45-7). libsframe2 set to manually installed. dpkg-dev is already the newest version (1.22.21). dpkg-dev set to manually installed. grep is already the newest version (3.12-1). libaudit-common is already the newest version (1:4.1.2-1). libjpeg-dev is already the newest version (1:2.1.5-4). libjpeg-dev set to manually installed. dash is already the newest version (0.5.12-12). gcc-14-base is already the newest version (14.3.0-8). gcc-14-base set to manually installed. libc6 is already the newest version (2.41-12). libattr1 is already the newest version (1:2.5.2-3). libhdf5-hl-fortran-310 is already the newest version (1.14.5+repack-4). libhdf5-hl-fortran-310 set to manually installed. g++-15 is already the newest version (15.2.0-4). g++-15 set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. libproc2-0 is already the newest version (2:4.0.4-9). libproc2-0 set to manually installed. libgmp-dev is already the newest version (2:6.3.0+dfsg-5). libgmp-dev set to manually installed. libevent-2.1-7t64 is already the newest version (2.1.12-stable-10+b1). libevent-2.1-7t64 set to manually installed. gcc is already the newest version (4:15.2.0-4). gcc set to manually installed. libgnutls-dane0t64 is already the newest version (3.8.10-2). libgnutls-dane0t64 set to manually installed. libdebhelper-perl is already the newest version (13.28). libdebhelper-perl set to manually installed. libnghttp3-dev is already the newest version (1.12.0-1). libnghttp3-dev set to manually installed. gcc-15 is already the newest version (15.2.0-4). gcc-15 set to manually installed. libcc1-0 is already the newest version (15.2.0-4). libcc1-0 set to manually installed. libpsl-dev is already the newest version (0.21.2-1.1+b1). libpsl-dev set to manually installed. libtinfo6 is already the newest version (6.5+20250216-2). libssl-dev is already the newest version (3.5.4-1). libssl-dev set to manually installed. comerr-dev is already the newest version (2.1-1.47.2-3+b3). comerr-dev set to manually installed. diffutils is already the newest version (1:3.10-4). libpsl5t64 is already the newest version (0.21.2-1.1+b1). libpsl5t64 set to manually installed. libtool is already the newest version (2.5.4-5). libtool set to manually installed. libaec0 is already the newest version (1.1.4-2). libaec0 set to manually installed. libc6-dev is already the newest version (2.41-12). libc6-dev set to manually installed. libkrb5-dev is already the newest version (1.21.3-5). libkrb5-dev set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-10). libsasl2-modules-db set to manually installed. libuuid1 is already the newest version (2.41.2-4). binutils-x86-64-linux-gnu is already the newest version (2.45-7). binutils-x86-64-linux-gnu set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. base-files is already the newest version (14). libnettle8t64 is already the newest version (3.10.2-1). libnettle8t64 set to manually installed. libkadm5clnt-mit12 is already the newest version (1.21.3-5). libkadm5clnt-mit12 set to manually installed. libp11-kit-dev is already the newest version (0.25.9-2). libp11-kit-dev set to manually installed. libc-bin is already the newest version (2.41-12). libcap2 is already the newest version (1:2.75-10+b1). debianutils is already the newest version (5.23.2). libbinutils is already the newest version (2.45-7). libbinutils set to manually installed. libctf0 is already the newest version (2.45-7). libctf0 set to manually installed. libp11-kit0 is already the newest version (0.25.9-2). libp11-kit0 set to manually installed. libhdf5-310 is already the newest version (1.14.5+repack-4). libhdf5-310 set to manually installed. binutils-common is already the newest version (2.45-7). binutils-common set to manually installed. libitm1 is already the newest version (15.2.0-4). libitm1 set to manually installed. librtmp-dev is already the newest version (2.4+20151223.gitfa8646d.1-3). librtmp-dev set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). libmd0 is already the newest version (1.1.0-2+b1). ncurses-bin is already the newest version (6.5+20250216-2). libhogweed6t64 is already the newest version (3.10.2-1). libhogweed6t64 set to manually installed. libcrypt1 is already the newest version (1:4.4.38-1). libjpeg62-turbo-dev is already the newest version (1:2.1.5-4). libjpeg62-turbo-dev set to manually installed. libperl5.40 is already the newest version (5.40.1-6). libperl5.40 set to manually installed. debconf is already the newest version (1.5.91). libatomic1 is already the newest version (15.2.0-4). libatomic1 set to manually installed. libkadm5srv-mit12 is already the newest version (1.21.3-5). libkadm5srv-mit12 set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. libcom-err2 is already the newest version (1.47.2-3+b3). libcom-err2 set to manually installed. liblzma5 is already the newest version (5.8.1-2). gettext is already the newest version (0.23.1-2+b1). gettext set to manually installed. libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. nettle-dev is already the newest version (3.10.2-1). nettle-dev set to manually installed. libkrb5support0 is already the newest version (1.21.3-5). libkrb5support0 set to manually installed. liblsan0 is already the newest version (15.2.0-4). liblsan0 set to manually installed. libboost-dev is already the newest version (1.83.0.2+b2). libboost-dev set to manually installed. libncursesw6 is already the newest version (6.5+20250216-2). libncursesw6 set to manually installed. dpkg is already the newest version (1.22.21). libstdc++-14-dev is already the newest version (14.3.0-8). libstdc++-14-dev set to manually installed. procps is already the newest version (2:4.0.4-9). procps set to manually installed. libarchive13t64 is already the newest version (3.7.4-4+b1). libarchive13t64 set to manually installed. libboost1.83-dev is already the newest version (1.83.0-5). libboost1.83-dev set to manually installed. libgomp1 is already the newest version (15.2.0-4). libgomp1 set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. libubsan1 is already the newest version (15.2.0-4). libubsan1 set to manually installed. libsmartcols1 is already the newest version (2.41.2-4). libmagic1t64 is already the newest version (1:5.46-5). libmagic1t64 set to manually installed. libbrotli-dev is already the newest version (1.1.0-2+b7). libbrotli-dev set to manually installed. libidn2-0 is already the newest version (2.3.8-4). libidn2-0 set to manually installed. libpam0g is already the newest version (1.7.0-5). libgssrpc4t64 is already the newest version (1.21.3-5). libgssrpc4t64 set to manually installed. libselinux1 is already the newest version (3.8.1-1). libreadline8t64 is already the newest version (8.3-3). libreadline8t64 set to manually installed. libdpkg-perl is already the newest version (1.22.21). libdpkg-perl set to manually installed. gcc-15-base is already the newest version (15.2.0-4). libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. bsdextrautils is already the newest version (2.41.2-4). bsdextrautils set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1). libgdbm-compat4t64 set to manually installed. libngtcp2-crypto-ossl0 is already the newest version (1.16.0-1). libngtcp2-crypto-ossl0 set to manually installed. libk5crypto3 is already the newest version (1.21.3-5). libk5crypto3 set to manually installed. libzstd-dev is already the newest version (1.5.7+dfsg-2). libzstd-dev set to manually installed. init-system-helpers is already the newest version (1.69). libxxhash0 is already the newest version (0.8.3-2). libxxhash0 set to manually installed. cpp-15-x86-64-linux-gnu is already the newest version (15.2.0-4). cpp-15-x86-64-linux-gnu set to manually installed. g++ is already the newest version (4:15.2.0-4). g++ set to manually installed. libexpat1 is already the newest version (2.7.3-1). libexpat1 set to manually installed. libuchardet0 is already the newest version (0.0.8-2). libuchardet0 set to manually installed. libuv1t64 is already the newest version (1.51.0-2). libuv1t64 set to manually installed. libasan8 is already the newest version (15.2.0-4). libasan8 set to manually installed. hdf5-helpers is already the newest version (1.14.5+repack-4). hdf5-helpers set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b1). libmagic-mgc is already the newest version (1:5.46-5). libmagic-mgc set to manually installed. autoconf is already the newest version (2.72-3.1). autoconf set to manually installed. libhwasan0 is already the newest version (15.2.0-4). libhwasan0 set to manually installed. libpkgconf3 is already the newest version (1.8.1-4). libpkgconf3 set to manually installed. mawk is already the newest version (1.3.4.20250131-1). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libxml2-16 is already the newest version (2.14.6+dfsg-0.1). libxml2-16 set to manually installed. cpp is already the newest version (4:15.2.0-4). cpp set to manually installed. libngtcp2-crypto-ossl-dev is already the newest version (1.16.0-1). libngtcp2-crypto-ossl-dev set to manually installed. libaudit1 is already the newest version (1:4.1.2-1). ncurses-base is already the newest version (6.5+20250216-2). libldap2 is already the newest version (2.6.10+dfsg-1). libldap2 set to manually installed. libgdbm6t64 is already the newest version (1.26-1). libgdbm6t64 set to manually installed. libkdb5-10t64 is already the newest version (1.21.3-5). libkdb5-10t64 set to manually installed. libjpeg62-turbo is already the newest version (1:2.1.5-4). libjpeg62-turbo set to manually installed. cpp-x86-64-linux-gnu is already the newest version (4:15.2.0-4). cpp-x86-64-linux-gnu set to manually installed. libmpc3 is already the newest version (1.3.1-2). libmpc3 set to manually installed. libngtcp2-16 is already the newest version (1.16.0-1). libngtcp2-16 set to manually installed. libngtcp2-dev is already the newest version (1.16.0-1). libngtcp2-dev set to manually installed. pkgconf-bin is already the newest version (1.8.1-4). pkgconf-bin set to manually installed. libjsoncpp26 is already the newest version (1.9.6-4). libjsoncpp26 set to manually installed. libquadmath0 is already the newest version (15.2.0-4). libquadmath0 set to manually installed. base-passwd is already the newest version (3.6.7). libpam-modules is already the newest version (1.7.0-5). libpcre2-8-0 is already the newest version (10.46-1). cmake is already the newest version (4.1.1+really3.31.6-2). cmake set to manually installed. libhdf5-cpp-310 is already the newest version (1.14.5+repack-4). libhdf5-cpp-310 set to manually installed. libidn2-dev is already the newest version (2.3.8-4). libidn2-dev set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-10). libsasl2-2 set to manually installed. libstdc++6 is already the newest version (15.2.0-4). libstdc++6 set to manually installed. libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-5). libgmpxx4ldbl set to manually installed. binutils is already the newest version (2.45-7). binutils set to manually installed. libmount1 is already the newest version (2.41.2-4). autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. libctf-nobfd0 is already the newest version (2.45-7). libctf-nobfd0 set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-3). librtmp1 set to manually installed. libpam-runtime is already the newest version (1.7.0-5). libkeyutils1 is already the newest version (1.6.3-6). libkeyutils1 set to manually installed. findutils is already the newest version (4.10.0-3). g++-15-x86-64-linux-gnu is already the newest version (15.2.0-4). g++-15-x86-64-linux-gnu set to manually installed. sed is already the newest version (4.9-2). librhash1 is already the newest version (1.4.6-1). librhash1 set to manually installed. file is already the newest version (1:5.46-5). file set to manually installed. libaec-dev is already the newest version (1.1.4-2). libaec-dev set to manually installed. sysvinit-utils is already the newest version (3.14-4). cmake-data is already the newest version (4.1.1+really3.31.6-2). cmake-data set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-6). perl-modules-5.40 set to manually installed. util-linux is already the newest version (2.41.2-4). pkgconf is already the newest version (1.8.1-4). pkgconf set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. libcurl4-openssl-dev is already the newest version (8.16.0-4). libcurl4-openssl-dev set to manually installed. libcppunit-1.15-0 is already the newest version (1.15.1-4+b2). libcppunit-1.15-0 set to manually installed. debhelper is already the newest version (13.28). debhelper set to manually installed. gcc-15-x86-64-linux-gnu is already the newest version (15.2.0-4). gcc-15-x86-64-linux-gnu set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. libtsan2 is already the newest version (15.2.0-4). libtsan2 set to manually installed. hostname is already the newest version (3.25). tar is already the newest version (1.35+dfsg-3.1). build-essential is already the newest version (12.12). build-essential set to manually installed. libldap-dev is already the newest version (2.6.10+dfsg-1). libldap-dev set to manually installed. libnghttp3-9 is already the newest version (1.12.0-1). libnghttp3-9 set to manually installed. cpp-15 is already the newest version (15.2.0-4). cpp-15 set to manually installed. libcppunit-dev is already the newest version (1.15.1-4+b2). libcppunit-dev set to manually installed. bash is already the newest version (5.3-1). rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. libssl3t64 is already the newest version (3.5.4-1). libhdf5-fortran-310 is already the newest version (1.14.5+repack-4). libhdf5-fortran-310 set to manually installed. linux-libc-dev is already the newest version (6.16.12-1). linux-libc-dev set to manually installed. coreutils is already the newest version (9.7-3). libcurl4t64 is already the newest version (8.16.0-4). libcurl4t64 set to manually installed. libblkid1 is already the newest version (2.41.2-4). libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-10). libstdc++-15-dev is already the newest version (15.2.0-4). libstdc++-15-dev set to manually installed. perl is already the newest version (5.40.1-6). perl set to manually installed. libsz2 is already the newest version (1.1.4-2). libsz2 set to manually installed. libnghttp2-dev is already the newest version (1.64.0-1.1+b1). libnghttp2-dev set to manually installed. libgnutls28-dev is already the newest version (3.8.10-2). libgnutls28-dev set to manually installed. libgcc-14-dev is already the newest version (14.3.0-8). libgcc-14-dev set to manually installed. automake is already the newest version (1:1.18.1-2). automake set to manually installed. libtasn1-6-dev is already the newest version (4.20.0-2). libtasn1-6-dev set to manually installed. make is already the newest version (4.4.1-2). make set to manually installed. libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. libsystemd0 is already the newest version (258.1-1). libgnutls-openssl27t64 is already the newest version (3.8.10-2). libgnutls-openssl27t64 set to manually installed. libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. libgfortran5 is already the newest version (15.2.0-4). libgfortran5 set to manually installed. libmpfr6 is already the newest version (4.2.2-2). libmpfr6 set to manually installed. dwz is already the newest version (0.16-2). dwz set to manually installed. libssh2-1-dev is already the newest version (1.11.1-1). libssh2-1-dev set to manually installed. dh-autoreconf is already the newest version (21). dh-autoreconf set to manually installed. libseccomp2 is already the newest version (2.6.0-2). libseccomp2 set to manually installed. libgssapi-krb5-2 is already the newest version (1.21.3-5). libgssapi-krb5-2 set to manually installed. libhdf5-hl-310 is already the newest version (1.14.5+repack-4). libhdf5-hl-310 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.0EHstv7z79 (Reading database ... 37538 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.0EHstv7z79 I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.0EHstv7z79 I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.0EHstv7z79... I: success in 80.1019 seconds Downloading dependency 133 of 236: libxxhash0:amd64=0.8.3-2 Downloading dependency 134 of 236: cpp-15-x86-64-linux-gnu:amd64=15.2.0-4 Downloading dependency 135 of 236: g++:amd64=4:15.2.0-4 Downloading dependency 136 of 236: libexpat1:amd64=2.7.3-1 Downloading dependency 137 of 236: libuchardet0:amd64=0.0.8-2 Downloading dependency 138 of 236: libuv1t64:amd64=1.51.0-2 Downloading dependency 139 of 236: libasan8:amd64=15.2.0-4 Downloading dependency 140 of 236: hdf5-helpers:amd64=1.14.5+repack-4 Downloading dependency 141 of 236: libcap-ng0:amd64=0.8.5-4+b1 Downloading dependency 142 of 236: libmagic-mgc:amd64=1:5.46-5 Downloading dependency 143 of 236: autoconf:amd64=2.72-3.1 Downloading dependency 144 of 236: libhwasan0:amd64=15.2.0-4 Downloading dependency 145 of 236: libpkgconf3:amd64=1.8.1-4 Downloading dependency 146 of 236: mawk:amd64=1.3.4.20250131-1 Downloading dependency 147 of 236: libarchive-zip-perl:amd64=1.68-1 Downloading dependency 148 of 236: libxml2-16:amd64=2.14.6+dfsg-0.1 Downloading dependency 149 of 236: cpp:amd64=4:15.2.0-4 Downloading dependency 150 of 236: libngtcp2-crypto-ossl-dev:amd64=1.16.0-1 Downloading dependency 151 of 236: libaudit1:amd64=1:4.1.2-1 Downloading dependency 152 of 236: ncurses-base:amd64=6.5+20250216-2 Downloading dependency 153 of 236: libldap2:amd64=2.6.10+dfsg-1 Downloading dependency 154 of 236: libgdbm6t64:amd64=1.26-1 Downloading dependency 155 of 236: libkdb5-10t64:amd64=1.21.3-5 Downloading dependency 156 of 236: libjpeg62-turbo:amd64=1:2.1.5-4 Downloading dependency 157 of 236: cpp-x86-64-linux-gnu:amd64=4:15.2.0-4 Downloading dependency 158 of 236: libmpc3:amd64=1.3.1-2 Downloading dependency 159 of 236: libngtcp2-16:amd64=1.16.0-1 Downloading dependency 160 of 236: libngtcp2-dev:amd64=1.16.0-1 Downloading dependency 161 of 236: pkgconf-bin:amd64=1.8.1-4 Downloading dependency 162 of 236: libjsoncpp26:amd64=1.9.6-4 Downloading dependency 163 of 236: libquadmath0:amd64=15.2.0-4 Downloading dependency 164 of 236: base-passwd:amd64=3.6.7 Downloading dependency 165 of 236: libpam-modules:amd64=1.7.0-5 Downloading dependency 166 of 236: libpcre2-8-0:amd64=10.46-1 Downloading dependency 167 of 236: cmake:amd64=4.1.1+really3.31.6-2 Downloading dependency 168 of 236: libhdf5-cpp-310:amd64=1.14.5+repack-4 Downloading dependency 169 of 236: libidn2-dev:amd64=2.3.8-4 Downloading dependency 170 of 236: libsasl2-2:amd64=2.1.28+dfsg1-10 Downloading dependency 171 of 236: libstdc++6:amd64=15.2.0-4 Downloading dependency 172 of 236: libgmpxx4ldbl:amd64=2:6.3.0+dfsg-5 Downloading dependency 173 of 236: binutils:amd64=2.45-7 Downloading dependency 174 of 236: libmount1:amd64=2.41.2-4 Downloading dependency 175 of 236: autotools-dev:amd64=20240727.1 Downloading dependency 176 of 236: libctf-nobfd0:amd64=2.45-7 Downloading dependency 177 of 236: dh-strip-nondeterminism:amd64=1.15.0-1 Downloading dependency 178 of 236: librtmp1:amd64=2.4+20151223.gitfa8646d.1-3 Downloading dependency 179 of 236: libpam-runtime:amd64=1.7.0-5 Downloading dependency 180 of 236: libkeyutils1:amd64=1.6.3-6 Downloading dependency 181 of 236: findutils:amd64=4.10.0-3 Downloading dependency 182 of 236: g++-15-x86-64-linux-gnu:amd64=15.2.0-4 Downloading dependency 183 of 236: sed:amd64=4.9-2 Downloading dependency 184 of 236: librhash1:amd64=1.4.6-1 Downloading dependency 185 of 236: file:amd64=1:5.46-5 Downloading dependency 186 of 236: libaec-dev:amd64=1.1.4-2 Downloading dependency 187 of 236: sysvinit-utils:amd64=3.14-4 Downloading dependency 188 of 236: cmake-data:amd64=4.1.1+really3.31.6-2 Downloading dependency 189 of 236: perl-modules-5.40:amd64=5.40.1-6 Downloading dependency 190 of 236: util-linux:amd64=2.41.2-4 Downloading dependency 191 of 236: pkgconf:amd64=1.8.1-4 Downloading dependency 192 of 236: libisl23:amd64=0.27-1 Downloading dependency 193 of 236: libcurl4-openssl-dev:amd64=8.16.0-4 Downloading dependency 194 of 236: libcppunit-1.15-0:amd64=1.15.1-4+b2 Downloading dependency 195 of 236: debhelper:amd64=13.28 Downloading dependency 196 of 236: gcc-15-x86-64-linux-gnu:amd64=15.2.0-4 Downloading dependency 197 of 236: sensible-utils:amd64=0.0.26 Downloading dependency 198 of 236: libtsan2:amd64=15.2.0-4 Downloading dependency 199 of 236: hostname:amd64=3.25 Downloading dependency 200 of 236: tar:amd64=1.35+dfsg-3.1 Downloading dependency 201 of 236: build-essential:amd64=12.12 Downloading dependency 202 of 236: libldap-dev:amd64=2.6.10+dfsg-1 Downloading dependency 203 of 236: libnghttp3-9:amd64=1.12.0-1 Downloading dependency 204 of 236: cpp-15:amd64=15.2.0-4 Downloading dependency 205 of 236: libcppunit-dev:amd64=1.15.1-4+b2 Downloading dependency 206 of 236: bash:amd64=5.3-1 Downloading dependency 207 of 236: rpcsvc-proto:amd64=1.4.3-1 Downloading dependency 208 of 236: libssl3t64:amd64=3.5.4-1 Downloading dependency 209 of 236: libhdf5-fortran-310:amd64=1.14.5+repack-4 Downloading dependency 210 of 236: linux-libc-dev:amd64=6.16.12-1 Downloading dependency 211 of 236: coreutils:amd64=9.7-3 Downloading dependency 212 of 236: libcurl4t64:amd64=8.16.0-4 Downloading dependency 213 of 236: libblkid1:amd64=2.41.2-4 Downloading dependency 214 of 236: libpipeline1:amd64=1.5.8-1 Downloading dependency 215 of 236: libdb5.3t64:amd64=5.3.28+dfsg2-10 Downloading dependency 216 of 236: libstdc++-15-dev:amd64=15.2.0-4 Downloading dependency 217 of 236: perl:amd64=5.40.1-6 Downloading dependency 218 of 236: libsz2:amd64=1.1.4-2 Downloading dependency 219 of 236: libnghttp2-dev:amd64=1.64.0-1.1+b1 Downloading dependency 220 of 236: libgnutls28-dev:amd64=3.8.10-2 Downloading dependency 221 of 236: libgcc-14-dev:amd64=14.3.0-8 Downloading dependency 222 of 236: automake:amd64=1:1.18.1-2 Downloading dependency 223 of 236: libtasn1-6-dev:amd64=4.20.0-2 Downloading dependency 224 of 236: make:amd64=4.4.1-2 Downloading dependency 225 of 236: libcrypt-dev:amd64=1:4.4.38-1 Downloading dependency 226 of 236: libsystemd0:amd64=258.1-1 Downloading dependency 227 of 236: libgnutls-openssl27t64:amd64=3.8.10-2 Downloading dependency 228 of 236: libunistring5:amd64=1.3-2 Downloading dependency 229 of 236: libgfortran5:amd64=15.2.0-4 Downloading dependency 230 of 236: libmpfr6:amd64=4.2.2-2 Downloading dependency 231 of 236: dwz:amd64=0.16-2 Downloading dependency 232 of 236: libssh2-1-dev:amd64=1.11.1-1 Downloading dependency 233 of 236: dh-autoreconf:amd64=21 Downloading dependency 234 of 236: libseccomp2:amd64=2.6.0-2 Downloading dependency 235 of 236: libgssapi-krb5-2:amd64=1.21.3-5 Downloading dependency 236 of 236: libhdf5-hl-310:amd64=1.14.5+repack-4 env --chdir=/srv/rebuilderd/tmp/rebuilderdysqzXk/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1760820315 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildgZk8tq/debrebuild.sbuildrc.8ctEUNdmj6Y6 sbuild --build=amd64 --host=amd64 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildgZk8tq/debrebuild.tar.H5ndXrZiBUV4 --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=mapsembler2-2.2.4+dfsg1 /srv/rebuilderd/tmp/rebuilderdysqzXk/inputs/mapsembler2_2.2.4+dfsg1-5.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u1 (16 August 2025) on osuosl41-amd64.novalocal +==============================================================================+ | mapsembler2 2.2.4+dfsg1-5 (amd64) Wed, 19 Nov 2025 00:44:39 +0000 | +==============================================================================+ Package: mapsembler2 Version: 2.2.4+dfsg1-5 Source Version: 2.2.4+dfsg1-5 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildgZk8tq/debrebuild.tar.H5ndXrZiBUV4 to /srv/rebuilderd/tmp/tmp.sbuild.W9in02mqg8... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Wed, 19 Nov 2025 00:44:46 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdysqzXk/inputs/mapsembler2_2.2.4+dfsg1-5.dsc exists in /srv/rebuilderd/tmp/rebuilderdysqzXk/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Wed, 19 Nov 2025 00:44:48 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-d6O2Ps/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Wed, 19 Nov 2025 00:44:51 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in amd64 arm64 kfreebsd-amd64 ppc64el s390x) +------------------------------------------------------------------------------+ | Build environment Wed, 19 Nov 2025 00:44:52 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.57+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.57-1 (2025-11-05) amd64 (x86_64) Toolchain package versions: binutils_2.45-7 dpkg-dev_1.22.21 g++-15_15.2.0-4 gcc-15_15.2.0-4 libc6-dev_2.41-12 libstdc++-14-dev_14.3.0-8 libstdc++-15-dev_15.2.0-4 libstdc++6_15.2.0-4 linux-libc-dev_6.16.12-1 Package versions: autoconf_2.72-3.1 automake_1:1.18.1-2 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.3-1 bc_1.07.1-4 binutils_2.45-7 binutils-common_2.45-7 binutils-x86-64-linux-gnu_2.45-7 bsdextrautils_2.41.2-4 build-essential_12.12 bzip2_1.0.8-6 cmake_4.1.1+really3.31.6-2 cmake-data_4.1.1+really3.31.6-2 comerr-dev_2.1-1.47.2-3+b3 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-4 cpp-15-x86-64-linux-gnu_15.2.0-4 cpp-x86-64-linux-gnu_4:15.2.0-4 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.10-4 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:15.2.0-4 g++-15_15.2.0-4 g++-15-x86-64-linux-gnu_15.2.0-4 g++-x86-64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-14-base_14.3.0-8 gcc-15_15.2.0-4 gcc-15-base_15.2.0-4 gcc-15-x86-64-linux-gnu_15.2.0-4 gcc-x86-64-linux-gnu_4:15.2.0-4 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 hdf5-helpers_1.14.5+repack-4 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.21.3-5 libacl1_2.3.2-2+b1 libaec-dev_1.1.4-2 libaec0_1.1.4-2 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.4-4+b1 libasan8_15.2.0-4 libatomic1_15.2.0-4 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45-7 libblkid1_2.41.2-4 libboost-dev_1.83.0.2+b2 libboost1.83-dev_1.83.0-5 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-4 libcom-err2_1.47.2-3+b3 libcppunit-1.15-0_1.15.1-4+b2 libcppunit-dev_1.15.1-4+b2 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-7 libctf0_2.45-7 libcurl4-openssl-dev_8.16.0-4 libcurl4t64_8.16.0-4 libdb5.3t64_5.3.28+dfsg2-10 libdebconfclient0_0.280 libdebhelper-perl_13.28 libdpkg-perl_1.22.21 libelf1t64_0.193-3 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.7.3-1 libffi8_3.5.2-2 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-14-dev_14.3.0-8 libgcc-15-dev_15.2.0-4 libgcc-s1_15.2.0-4 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgfortran5_15.2.0-4 libgmp-dev_2:6.3.0+dfsg-5 libgmp10_2:6.3.0+dfsg-5 libgmpxx4ldbl_2:6.3.0+dfsg-5 libgnutls-dane0t64_3.8.10-2 libgnutls-openssl27t64_3.8.10-2 libgnutls28-dev_3.8.10-2 libgnutls30t64_3.8.10-2 libgomp1_15.2.0-4 libgprofng0_2.45-7 libgssapi-krb5-2_1.21.3-5 libgssrpc4t64_1.21.3-5 libhdf5-310_1.14.5+repack-4 libhdf5-cpp-310_1.14.5+repack-4 libhdf5-dev_1.14.5+repack-4 libhdf5-fortran-310_1.14.5+repack-4 libhdf5-hl-310_1.14.5+repack-4 libhdf5-hl-cpp-310_1.14.5+repack-4 libhdf5-hl-fortran-310_1.14.5+repack-4 libhogweed6t64_3.10.2-1 libhwasan0_15.2.0-4 libidn2-0_2.3.8-4 libidn2-dev_2.3.8-4 libisl23_0.27-1 libitm1_15.2.0-4 libjansson4_2.14-2+b3 libjpeg-dev_1:2.1.5-4 libjpeg62-turbo_1:2.1.5-4 libjpeg62-turbo-dev_1:2.1.5-4 libjsoncpp26_1.9.6-4 libk5crypto3_1.21.3-5 libkadm5clnt-mit12_1.21.3-5 libkadm5srv-mit12_1.21.3-5 libkdb5-10t64_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5-dev_1.21.3-5 libkrb5support0_1.21.3-5 libldap-dev_2.6.10+dfsg-1 libldap2_2.6.10+dfsg-1 liblsan0_15.2.0-4 liblz4-1_1.10.0-4 liblzma5_5.8.1-2 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.2-4 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.2-1 libnghttp2-14_1.64.0-1.1+b1 libnghttp2-dev_1.64.0-1.1+b1 libnghttp3-9_1.12.0-1 libnghttp3-dev_1.12.0-1 libngtcp2-16_1.16.0-1 libngtcp2-crypto-ossl-dev_1.16.0-1 libngtcp2-crypto-ossl0_1.16.0-1 libngtcp2-dev_1.16.0-1 libp11-kit-dev_0.25.9-2 libp11-kit0_0.25.9-2 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.46-1 libperl5.40_5.40.1-6 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libproc2-0_2:4.0.4-9 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libquadmath0_15.2.0-4 libreadline8t64_8.3-3 librhash1_1.4.6-1 librtmp-dev_2.4+20151223.gitfa8646d.1-3 librtmp1_2.4+20151223.gitfa8646d.1-3 libsasl2-2_2.1.28+dfsg1-10 libsasl2-modules-db_2.1.28+dfsg1-10 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsframe2_2.45-7 libsmartcols1_2.41.2-4 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.5.4-1 libssl3t64_3.5.4-1 libstdc++-14-dev_14.3.0-8 libstdc++-15-dev_15.2.0-4 libstdc++6_15.2.0-4 libsystemd0_258.1-1 libsz2_1.1.4-2 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-5 libtsan2_15.2.0-4 libubsan1_15.2.0-4 libuchardet0_0.0.8-2 libudev1_258.1-1 libunbound8_1.24.0-2 libunistring5_1.3-2 libuuid1_2.41.2-4 libuv1t64_1.51.0-2 libxml2-16_2.14.6+dfsg-0.1 libxxhash0_0.8.3-2 libzstd-dev_1.5.7+dfsg-2 libzstd1_1.5.7+dfsg-2 linux-libc-dev_6.16.12-1 m4_1.4.20-2 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 nettle-dev_3.10.2-1 openssl-provider-legacy_3.5.4-1 patch_2.8-2 perl_5.40.1-6 perl-base_5.40.1-6 perl-modules-5.40_5.40.1-6 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 procps_2:4.0.4-9 readline-common_8.3-3 rpcsvc-proto_1.4.3-1 sed_4.9-2 sensible-utils_0.0.26 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 util-linux_2.41.2-4 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Wed, 19 Nov 2025 00:44:52 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mapsembler2 Binary: mapsembler2 Architecture: amd64 arm64 kfreebsd-amd64 ppc64el s390x Version: 2.2.4+dfsg1-5 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille , Étienne Mollier , Homepage: http://colibread.inria.fr/mapsembler2/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/mapsembler2 Vcs-Git: https://salsa.debian.org/med-team/mapsembler2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev Package-List: mapsembler2 deb science optional arch=amd64,arm64,kfreebsd-amd64,ppc64el,s390x Checksums-Sha1: a9219b84bbe33544c2c239e148d2df5cd3593ba3 1369588 mapsembler2_2.2.4+dfsg1.orig.tar.xz b23534962e21d290749b47e8416c4c96e82c211a 24464 mapsembler2_2.2.4+dfsg1-5.debian.tar.xz Checksums-Sha256: 44b215f922ed34c3a167eb512012792e7d777df17d3dda6a2c4a5a0959e8b824 1369588 mapsembler2_2.2.4+dfsg1.orig.tar.xz c95261bce826d6105f291638779f3b41ae7e934ff684390dcc49fd58cea343be 24464 mapsembler2_2.2.4+dfsg1-5.debian.tar.xz Files: 5c9add3cf5d9cfbd1c340efe580408e2 1369588 mapsembler2_2.2.4+dfsg1.orig.tar.xz f30070cf3089f4dd1edf3b544145d313 24464 mapsembler2_2.2.4+dfsg1-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmjz/PkRHHRpbGxlQGRl 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mapsembler2_2.2.4+dfsg1.orig.tar.xz dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg1-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_libs dpkg-source: info: applying run_pipeline dpkg-source: info: applying add_hardening dpkg-source: info: applying skip_mphe dpkg-source: info: applying gcc-5.patch dpkg-source: info: applying libgomp.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying no_std_hash_redefinition.patch dpkg-source: info: applying gcc10.patch dpkg-source: info: applying check_memory.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying gcc11.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1760820315 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package mapsembler2 dpkg-buildpackage: info: source version 2.2.4+dfsg1-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' rm -rf mapsembler2_extremities/build cd mapsembler2_extend && make clean make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' rm -f mapsembler2_extend/mapsembler_extend cd kissreads_graph && make clean make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' rm -rf kissreads_graph *.o read_coherence_mapsembler/*.o ../minia/*.o make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' rm -f kissreads_graph/mapsembler2_kissreads_graph cd kissreads && make clean make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' rm -rf ./src/*.o kissreads make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' rm -f kissreads/mapsembler2_kissreads dh_clean make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' dh_auto_configure -- -DCMAKE_POLICY_VERSION_MINIMUM=3.5 make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' dh_auto_configure --sourcedirectory=mapsembler2_extremities --builddirectory=mapsembler2_extremities/build cd mapsembler2_extremities/build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:1 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at cmake/FindTR1.cmake:10 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Call Stack (most recent call first): CMakeLists.txt:26 (include) -- Performing Test SHARED_PTR_USE_TR1_MEMORY -- Performing Test SHARED_PTR_USE_TR1_MEMORY - Success -- Performing Test SHARED_PTR_USE_MEMORY -- Performing Test SHARED_PTR_USE_MEMORY - Success -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP - Success -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP - Success -- gatb-core is here '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core' CMake Deprecation Warning at thirdparty/gatb-core/CMakeLists.txt:4 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- CppUnit: found headers (in /usr/include) but not the library... -- CppUnit NOT FOUND -- Found Perl: /usr/bin/perl (found version "5.40.1") -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:11 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_int128_t_USE__uint128" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:33 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. -- Check size of __uint128_t -- Check size of __uint128_t - done CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:12 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "int128_t_USE__uint128_t" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:34 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. ------------------------------------------------------------------------------------- -- C++ EXTENSIONS WILL BE USED... ------------------------------------------------------------------------------------- -- Options: -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -- SUPPORTED KMER SIZES ARE 32 64 96 128 -- ---------- GATB TOOLS ---------- CMake Deprecation Warning at thirdparty/gatb-core/thirdparty/emphf/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:29 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- ---------- GATB EXAMPLES ---------- -- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1 -- Configuring done (2.4s) CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:221 (ADD_DEPENDENCIES): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "hdf5" of target "gatbcore-static" does not exist. This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build dh_auto_build --sourcedirectory=mapsembler2_extremities --builddirectory=mapsembler2_extremities/build cd mapsembler2_extremities/build && make -j6 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' /usr/bin/cmake -S/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities -B/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/depend make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 0%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankAlbum.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/base_hash.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankHelpers.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitpair_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitstream.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/common.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_generic.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_hem.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan_mmap.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_seq.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/emphf_config.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/gen_synthetic_data.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph_sorter_scan.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph_sorter_seq.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/internal_memory_model.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mmap_memory_model.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mphf.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mphf_hem.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/packed_edge_list.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/packed_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/perfutils.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/ranked_bitpair_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_generic.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_hem.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 10%] Built target emphf_copyasis [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRandom.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRegistery.cpp [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp [ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp [ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp [ 24%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp [ 24%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function ‘gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set&)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:47: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 772 | printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance); | ~^ ~~~~~~~~~~~~~~ | | | | int long int | %ld In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function ‘static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:15: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 566 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function ‘static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:15: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 590 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:30: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 31%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MPHF.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp [ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp [ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.cpp [ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp [ 55%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 55%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 58%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 58%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND 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ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -MF 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-D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 79%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd 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-I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 82%] Linking CXX static library ../lib/None/libgatbcore.a cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/None/libgatbcore.a "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o" 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"CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o" 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"CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o" /usr/bin/ranlib ../lib/None/libgatbcore.a make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 82%] Built target gatbcore-static make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/depend make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/depend make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/depend make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/mapsembler2_extremities.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 86%] Building CXX object 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CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -MF CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o.d -o CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -MD -MT CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -MF CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o.d -o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp [ 89%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o [ 89%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o -MF CMakeFiles/dbgh5.dir/dbgh5.cpp.o.d -o CMakeFiles/dbgh5.dir/dbgh5.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o -MF CMakeFiles/dbginfo.dir/dbginfo.cpp.o.d -o CMakeFiles/dbginfo.dir/dbginfo.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 93%] Linking CXX executable ../bin/None/dbgh5 cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 [ 96%] Linking CXX executable ../bin/None/dbginfo cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic -Wl,--dependency-file=CMakeFiles/dbgh5.dir/link.d CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 ../lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 96%] Built target dbgh5 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic -Wl,--dependency-file=CMakeFiles/dbginfo.dir/link.d CMakeFiles/dbginfo.dir/dbginfo.cpp.o -o ../bin/None/dbginfo ../lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 96%] Built target dbginfo [100%] Linking CXX executable mapsembler2_extremities /usr/bin/cmake -E cmake_link_script CMakeFiles/mapsembler2_extremities.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic -Wl,--dependency-file=CMakeFiles/mapsembler2_extremities.dir/link.d CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -o mapsembler2_extremities ext/gatb-core/lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [100%] Built target mapsembler2_extremities make[3]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' dh_auto_build --sourcedirectory=mapsembler2_extend -- k=29 cd mapsembler2_extend && make -j6 INSTALL="install --strip-program=true" k=29 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' g++ -o ../minia/Pool.o -c ../minia/Pool.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bank.cpp: In member function ‘void Bank::init(char**, int)’: ../minia/Bank.cpp:282:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 282 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function ‘void BinaryBank::open(bool)’: ../minia/Bank.cpp:713:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 713 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function ‘void BinaryReads::open(bool)’: ../minia/Bank.cpp:798:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 798 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function ‘int KmersBuffer::readkmers()’: ../minia/Bank.cpp:988:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 988 | fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ../minia/Bloom.cpp: In member function ‘void Bloom::load(char*)’: ../minia/Bloom.cpp:256:51: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | printf("loading bloom filter from file, nelem %lli \n",nchar); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li g++ -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bloom.cpp:257:7: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 257 | fread(blooma, sizeof(unsigned char), nchar, file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Terminator.cpp: In constructor ‘BranchingTerminator::BranchingTerminator(BinaryBank*, uint64_t, Bloom*, Set*)’: ../minia/Terminator.cpp:275:105: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 275 | fprintf (stderr,"%cExtrapolating the number of branching kmers from the first %dM kmers: %lld",13,(int)ceilf(nb_extrapolation/1024.0/1024.0),estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Terminator.cpp:303:89: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld ../minia/Terminator.cpp:303:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Terminator.cpp: In constructor ‘BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)’: ../minia/Terminator.cpp:337:38: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 337 | fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell),((1<)*1.0)/1024.0/1024.0); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/Set.o -c ../minia/Set.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/Utils.o -c ../minia/Utils.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Set.cpp: In member function ‘void AssocPairedSet::load(char*)’: ../minia/Set.cpp:290:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 290 | fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ../minia/Utils.cpp: In function ‘uint64_t extrapolate_distinct_kmers_wrapped(long unsigned int, Bank*)’: ../minia/Utils.cpp:434:100: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 434 | if ((NbRead%10000)==0) fprintf (stderr,(char*)"%cExtrapolating number of distinct kmers %lld",13,NbRead); | ~~~^ ~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld ../minia/Utils.cpp: In instantiation of ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’: ../minia/Utils.cpp:167:85: required from here 167 | template Bloom *bloom_create_bloo1(BloomCpt *bloom_counter, bool from_dump); | ^ ../minia/Utils.cpp:121:53: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Utils.cpp:121:79: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Utils.cpp: In function ‘void end_kmer_count_partition(bool, Hash16*)’: ../minia/Utils.cpp:187:14: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 187 | ftruncate(fileno(F_kmercpt_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:199:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&cptk, sizeof(cptk), 1, F_kmercpt_read); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:225:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 225 | ftruncate(fileno(F_kmercpt_read), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Utils.cpp: In function ‘char* return_file_name(const char*)’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:970, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:28:16, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:25:7: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:28:16, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:25:7, inlined from ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’ at ../minia/Utils.cpp:127:22: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:28:16, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:25:7, inlined from ‘void bloom_pass_reads_binary(T*, BloomCpt*, char*) [with T = Bloom]’ at ../minia/Utils.cpp:84:29, inlined from ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’ at ../minia/Utils.cpp:151:32: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:28:16, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:25:7, inlined from ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’ at ../minia/Utils.cpp:148:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘void end_kmer_count_partition(bool, Hash16*)’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:28:16, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:25:7, inlined from ‘void end_kmer_count_partition(bool, Hash16*)’ at ../minia/Utils.cpp:196:91: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/SortingCount.cpp: In function ‘void sorting_count(Bank*, char*, int, int, bool, int, bool)’: ../minia/SortingCount.cpp:56:15: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 56 | getcwd(current_path,sizeof(current_path)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:283:15: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 283 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:537:19: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 537 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:45:25: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 512 [-Wformat-overflow=] 45 | sprintf(p_buf, "%s/%s", temp_dir, ep->d_name); | ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:970, from ../minia/SortingCount.h:1, from ../minia/SortingCount.cpp:1: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void sorting_count(Bank*, char*, int, int, bool, int, bool)’ at ../minia/SortingCount.cpp:45:16: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 1280 bytes into a destination of size 512 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Debloom.cpp: In function ‘int debloom(int, int)’: ../minia/Debloom.cpp:154:89: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 154 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%c Writing positive Bloom Kmers %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld ../minia/Debloom.cpp:158:26: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 158 | fprintf(stderr,"\n%lli kmers written\n",cc); | ~~~^ ~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:191:76: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 191 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%cBuild Hash table %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld ../minia/Debloom.cpp:195:58: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:195:65: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp:208:34: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 208 | fprintf(stderr,"\n%lli false positives written , partition %i \n",n_false_positives,numpart); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:225:81: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 225 | fprintf(stderr,"Total nb false positives stored in the Debloom hashtable %lli \n",n_false_positives); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Debloom.cpp: In function ‘Set* load_false_positives()’: ../minia/Debloom.cpp:280:112: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 280 | if ((NbInsertedKmers%10000)==0) fprintf (stderr,(char*)"%cInsert false positive Kmers in hash table %lld",13,NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld ../minia/Debloom.cpp:284:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 284 | fprintf (stderr,"\nInserted %lld false positive kmers in the hash structure.\n\n",NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld ../minia/Debloom.cpp: In function ‘void print_size_summary(FPSet*)’: ../minia/Debloom.cpp:445:50: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 445 | fprintf(stderr, "Size of the FP table : %lli FP x %d bits = %.2lf MB \n", fp->capacity(), bits_per_FP_element, toMB((double)(size_T1)) ); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:448:47: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 448 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp: In function ‘void print_size_summary(FPSetCascading4*)’: ../minia/Debloom.cpp:465:47: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 465 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp: In function ‘void end_debloom_partition(bool)’: ../minia/Debloom.cpp:29:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 29 | ftruncate(fileno(F_debloom_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o commons.o -c commons.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o IterativeExtensions.o -c IterativeExtensions.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o Fragment_Bank.o -c Fragment_Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o Fragment.o -c Fragment.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o GraphOutput.o -c GraphOutput.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mapsembler_extend ../minia/Pool.o ../minia/Bank.o ../minia/Bloom.o ../minia/Hash16.o ../minia/Terminator.o ../minia/Kmer.o ../minia/Traversal.o ../minia/LinearCounter.o ../minia/Set.o ../minia/Utils.o ../minia/SortingCount.o ../minia/Debloom.o ../minia/OAHash.o commons.o IterativeExtensions.o Fragment_Bank.o Fragment.o GraphOutput.o mapsembler_extend.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ mapsembler_extend.cpp: In function ‘int main(int, char**)’: mapsembler_extend.cpp:145:50: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 145 | printf(" Will use genome_size=%llu\n", genome_size); //TODO format | ~~~^ ~~~~~~~~~~~ | | | | | int64_t {aka long int} | long long unsigned int | %lu mapsembler_extend.cpp:320:76: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 320 | command = string("rm -f ")+string(prefix_trashable)+string("*"); system((char *)command.c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' dh_auto_build --sourcedirectory=kissreads_graph -- k=29 cd kissreads_graph && make -j6 INSTALL="install --strip-program=true" k=29 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' g++ -o block_allocator.o -c block_allocator.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o DeBruijnGraph.o -c DeBruijnGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o Fragment.o -c Fragment.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 DeBruijnGraph.cpp: In member function ‘void DBG::index_nodes()’: DeBruijnGraph.cpp:952:41: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 952 | printf("total seeds in fragments %lli size %lli MB \n",total_seeds,total_seeds*sizeof(couple)/1024LL/1024LL); | ~~~^ ~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o json.o -c json.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o read_coherence_mapsembler/libchash.o -c read_coherence_mapsembler/libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashFind(HashTable*, u_long)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1227:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1227 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashFindLast(HashTable*)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1232:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1232 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashFirstBucket(HashTable*)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1296:10: note: in expansion of macro ‘LOAD_AND_RETURN’ 1296 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashNextBucket(HashTable*)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1306:10: note: in expansion of macro ‘LOAD_AND_RETURN’ 1306 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)’: read_coherence_mapsembler/libchash.cpp:1413:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1413 | fread(szMagicKey, 1, 4, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1422:4: note: in expansion of macro ‘READ_UL’ 1422 | READ_UL(fp, ht->cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1423:4: note: in expansion of macro ‘READ_UL’ 1423 | READ_UL(fp, ht->cItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1424:4: note: in expansion of macro ‘READ_UL’ 1424 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1427:4: note: in expansion of macro ‘READ_UL’ 1427 | READ_UL(fp, cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1429:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1429 | fread(rgchKeys, 1, cchKey, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1434:7: note: in expansion of macro ‘READ_UL’ 1434 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘u_long SparseRead(FILE*, SparseBin**)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:628:4: note: in expansion of macro ‘READ_UL’ 628 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:633:10: note: in expansion of macro ‘READ_UL’ 633 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ g++ -o read_coherence_mapsembler/couple.o -c read_coherence_mapsembler/couple.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o read_coherence_mapsembler/misc_tools.o -c read_coherence_mapsembler/misc_tools.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o read_coherence_mapsembler/read_groups.o -c read_coherence_mapsembler/read_groups.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o read_coherence_mapsembler/consensus_common.o -c read_coherence_mapsembler/consensus_common.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o read_coherence_mapsembler/list.o -c read_coherence_mapsembler/list.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o read_coherence_mapsembler/read_coherence.o -c read_coherence_mapsembler/read_coherence.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ read_coherence_mapsembler/read_coherence.cpp: In function ‘char** read_coherent_homologs(hash_t, const char*, int, int, int, int, int*)’: read_coherence_mapsembler/read_coherence.cpp:988:39: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 3 has type ‘group_t’ {aka ‘list_*’} [-Wformat=] 988 | "error group %X: recomputed number of substitutions (%d) not matching dynamic number of substitutions (%d) (so i'm glad i coded this test)\n fragment: %s\nconsensus:%s\n", | ~^ | | | unsigned int 989 | current_read_group, number_substitutions, | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} read_coherence_mapsembler/read_coherence.cpp:1002:39: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 3 has type ‘group_t’ {aka ‘list_*’} [-Wformat=] 1002 | "error group %X: recomputed consensus (%s) not matching dynamic consensus (%s) (so i'm glad i coded this test)\n fragment: %s\n", | ~^ | | | unsigned int 1003 | current_read_group, substarters[*nb_consensuses], | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} g++ -o read_coherence_mapsembler/interface_libchash.o -c read_coherence_mapsembler/interface_libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ read_coherence_mapsembler/interface_libchash.cpp: In function ‘void iterate_and_fill_offsets(hash_t)’: read_coherence_mapsembler/interface_libchash.cpp:408:36: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 408 | printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); | ~~~^ ~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li read_coherence_mapsembler/interface_libchash.cpp:408:54: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 408 | printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li g++ -o commons.o -c commons.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o Loader.o -c Loader.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ReadMapper.o -c ReadMapper.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ReadMapper.cpp: In function ‘uint64_t map_reads(Bank*, std::vector)’: ReadMapper.cpp:38:31: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 38 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:38:56: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 38 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:240:23: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 240 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:240:48: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 240 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld g++ -o kissreads_graph block_allocator.o DeBruijnGraph.o Fragment.o json.o read_coherence_mapsembler/libchash.o read_coherence_mapsembler/couple.o read_coherence_mapsembler/misc_tools.o read_coherence_mapsembler/read_groups.o read_coherence_mapsembler/consensus_common.o read_coherence_mapsembler/list.o read_coherence_mapsembler/read_coherence.o read_coherence_mapsembler/interface_libchash.o commons.o ../minia/Kmer.o ../minia/Bank.o Loader.o ReadMapper.o KissReadsGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' dh_auto_build --sourcedirectory=kissreads -- k=29 cd kissreads && make -j6 INSTALL="install --strip-program=true" k=29 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' gcc -o src/coherent_algorithm.o -c src/coherent_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/commons.o -c src/commons.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/couple.o -c src/couple.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/extension_algorithm.o -c src/extension_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/fragment_index.o -c src/fragment_index.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/kissReads.o -c src/kissReads.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/list.o -c src/list.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/outputs.o -c src/outputs.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/interface_libchash.o -c src/interface_libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/libchash.o -c src/libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ src/libchash.c: In function ‘HashFind’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1221:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1221 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashFindLast’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1226:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1226 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashFirstBucket’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1290:10: note: in expansion of macro ‘LOAD_AND_RETURN’ 1290 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashNextBucket’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1300:10: note: in expansion of macro ‘LOAD_AND_RETURN’ 1300 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashDoLoad’: src/libchash.c:1407:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1407 | fread(szMagicKey, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1416:4: note: in expansion of macro ‘READ_UL’ 1416 | READ_UL(fp, ht->cchKey); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1417:4: note: in expansion of macro ‘READ_UL’ 1417 | READ_UL(fp, ht->cItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1418:4: note: in expansion of macro ‘READ_UL’ 1418 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1421:4: note: in expansion of macro ‘READ_UL’ 1421 | READ_UL(fp, cchKey); | ^~~~~~~ src/libchash.c:1423:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1423 | fread(rgchKeys, 1, cchKey, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1428:7: note: in expansion of macro ‘READ_UL’ 1428 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ src/libchash.c: In function ‘SparseRead’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:622:4: note: in expansion of macro ‘READ_UL’ 622 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:627:10: note: in expansion of macro ‘READ_UL’ 627 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ gcc -o kissreads src/coherent_algorithm.o src/commons.o src/couple.o src/extension_algorithm.o src/fragment_index.o src/kissReads.o src/list.o src/outputs.o src/interface_libchash.o src/libchash.o -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -lm -O3 -lz -lgomp ################# # Compilation OK# ################# make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/mapsembler2/ -a debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' mv ./kissreads/kissreads ./kissreads/mapsembler2_kissreads mv ./kissreads_graph/kissreads_graph ./kissreads_graph/mapsembler2_kissreads_graph cp run_mapsembler2_pipeline.sh run_mapsembler2_pipeline dh_install make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'mapsembler2-dbgsym' in '../mapsembler2-dbgsym_2.2.4+dfsg1-5_amd64.deb'. dpkg-deb: building package 'mapsembler2' in '../mapsembler2_2.2.4+dfsg1-5_amd64.deb'. dpkg-genbuildinfo --build=any -O../mapsembler2_2.2.4+dfsg1-5_amd64.buildinfo dpkg-genchanges --build=any -O../mapsembler2_2.2.4+dfsg1-5_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-11-19T00:47:01Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Wed, 19 Nov 2025 00:47:02 +0000 | +------------------------------------------------------------------------------+ mapsembler2_2.2.4+dfsg1-5_amd64.changes: ---------------------------------------- Format: 1.8 Date: Sat, 18 Oct 2025 22:45:15 +0200 Source: mapsembler2 Binary: mapsembler2 mapsembler2-dbgsym Architecture: amd64 Version: 2.2.4+dfsg1-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: mapsembler2 - bioinformatics targeted assembly software Closes: 1113267 Changes: mapsembler2 (2.2.4+dfsg1-5) unstable; urgency=medium . * Fix build using CMake 4 Closes: #1113267 * d/watch: version=5 * Standards-Version: 4.7.2 (routine-update) * debputy lint --auto-fix (routine-update) Checksums-Sha1: b466ff2d689fa81e3fb951a87dd05636e72b3043 2533776 mapsembler2-dbgsym_2.2.4+dfsg1-5_amd64.deb 1b72dc20100d8230b843ca35ec8bfc986be5eb58 7719 mapsembler2_2.2.4+dfsg1-5_amd64.buildinfo c89a85e41e5dff35f2626f8de855ffc2a628f973 736296 mapsembler2_2.2.4+dfsg1-5_amd64.deb Checksums-Sha256: 5f03160aa43ab24d9771592115ec388454c37edb22721a677e5dd91179a32378 2533776 mapsembler2-dbgsym_2.2.4+dfsg1-5_amd64.deb 7b85f31ebcedb8f4bdcab3946f2d1842ec0db7422f58b237bbd8c707dde56b88 7719 mapsembler2_2.2.4+dfsg1-5_amd64.buildinfo 4b358916bf89ea53dc9cd9080447a7bccc9271f36ad5061fbb863a3a048a7575 736296 mapsembler2_2.2.4+dfsg1-5_amd64.deb Files: 7bcef5a0fbc4a676f8b327b2e027d111 2533776 debug optional mapsembler2-dbgsym_2.2.4+dfsg1-5_amd64.deb cb2a97afea7877c089aefd991d4f5212 7719 science optional mapsembler2_2.2.4+dfsg1-5_amd64.buildinfo 7de6be81edf2168de49edead17ba612e 736296 science optional mapsembler2_2.2.4+dfsg1-5_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Wed, 19 Nov 2025 00:47:03 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: mapsembler2 Binary: mapsembler2 mapsembler2-dbgsym Architecture: amd64 Version: 2.2.4+dfsg1-5 Checksums-Md5: 7bcef5a0fbc4a676f8b327b2e027d111 2533776 mapsembler2-dbgsym_2.2.4+dfsg1-5_amd64.deb 7de6be81edf2168de49edead17ba612e 736296 mapsembler2_2.2.4+dfsg1-5_amd64.deb Checksums-Sha1: b466ff2d689fa81e3fb951a87dd05636e72b3043 2533776 mapsembler2-dbgsym_2.2.4+dfsg1-5_amd64.deb c89a85e41e5dff35f2626f8de855ffc2a628f973 736296 mapsembler2_2.2.4+dfsg1-5_amd64.deb Checksums-Sha256: 5f03160aa43ab24d9771592115ec388454c37edb22721a677e5dd91179a32378 2533776 mapsembler2-dbgsym_2.2.4+dfsg1-5_amd64.deb 4b358916bf89ea53dc9cd9080447a7bccc9271f36ad5061fbb863a3a048a7575 736296 mapsembler2_2.2.4+dfsg1-5_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 19 Nov 2025 00:47:01 +0000 Build-Path: /build/reproducible-path/mapsembler2-2.2.4+dfsg1 Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-2), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.7), bash (= 5.3-1), bc (= 1.07.1-4), binutils (= 2.45-7), binutils-common (= 2.45-7), binutils-x86-64-linux-gnu (= 2.45-7), bsdextrautils (= 2.41.2-4), build-essential (= 12.12), bzip2 (= 1.0.8-6), cmake (= 4.1.1+really3.31.6-2), cmake-data (= 4.1.1+really3.31.6-2), comerr-dev (= 2.1-1.47.2-3+b3), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-15 (= 15.2.0-4), cpp-15-x86-64-linux-gnu (= 15.2.0-4), cpp-x86-64-linux-gnu (= 4:15.2.0-4), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.28), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.10-4), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.16-2), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-4), g++-15-x86-64-linux-gnu (= 15.2.0-4), g++-x86-64-linux-gnu (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-14-base (= 14.3.0-8), gcc-15 (= 15.2.0-4), gcc-15-base (= 15.2.0-4), gcc-15-x86-64-linux-gnu (= 15.2.0-4), gcc-x86-64-linux-gnu (= 4:15.2.0-4), gettext (= 0.23.1-2+b1), gettext-base (= 0.23.1-2+b1), grep (= 3.12-1), groff-base (= 1.23.0-9), gzip (= 1.13-1), hdf5-helpers (= 1.14.5+repack-4), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.21.3-5), libacl1 (= 2.3.2-2+b1), libaec-dev (= 1.1.4-2), libaec0 (= 1.1.4-2), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.7.4-4+b1), libasan8 (= 15.2.0-4), libatomic1 (= 15.2.0-4), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1), libbinutils (= 2.45-7), libblkid1 (= 2.41.2-4), libboost-dev (= 1.83.0.2+b2), libboost1.83-dev (= 1.83.0-5), libbrotli-dev (= 1.1.0-2+b7), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcc1-0 (= 15.2.0-4), libcom-err2 (= 1.47.2-3+b3), libcppunit-1.15-0 (= 1.15.1-4+b2), libcppunit-dev (= 1.15.1-4+b2), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.45-7), libctf0 (= 2.45-7), libcurl4-openssl-dev (= 8.16.0-4), libcurl4t64 (= 8.16.0-4), libdb5.3t64 (= 5.3.28+dfsg2-10), libdebconfclient0 (= 0.280), libdebhelper-perl (= 13.28), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.193-3), libevent-2.1-7t64 (= 2.1.12-stable-10+b1), libexpat1 (= 2.7.3-1), libffi8 (= 3.5.2-2), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-14-dev (= 14.3.0-8), libgcc-15-dev (= 15.2.0-4), libgcc-s1 (= 15.2.0-4), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libgfortran5 (= 15.2.0-4), libgmp-dev (= 2:6.3.0+dfsg-5), libgmp10 (= 2:6.3.0+dfsg-5), libgmpxx4ldbl (= 2:6.3.0+dfsg-5), libgnutls-dane0t64 (= 3.8.10-2), libgnutls-openssl27t64 (= 3.8.10-2), libgnutls28-dev (= 3.8.10-2), libgnutls30t64 (= 3.8.10-2), libgomp1 (= 15.2.0-4), libgprofng0 (= 2.45-7), libgssapi-krb5-2 (= 1.21.3-5), libgssrpc4t64 (= 1.21.3-5), libhdf5-310 (= 1.14.5+repack-4), libhdf5-cpp-310 (= 1.14.5+repack-4), libhdf5-dev (= 1.14.5+repack-4), libhdf5-fortran-310 (= 1.14.5+repack-4), libhdf5-hl-310 (= 1.14.5+repack-4), libhdf5-hl-cpp-310 (= 1.14.5+repack-4), libhdf5-hl-fortran-310 (= 1.14.5+repack-4), libhogweed6t64 (= 3.10.2-1), libhwasan0 (= 15.2.0-4), libidn2-0 (= 2.3.8-4), libidn2-dev (= 2.3.8-4), libisl23 (= 0.27-1), libitm1 (= 15.2.0-4), libjansson4 (= 2.14-2+b3), libjpeg-dev (= 1:2.1.5-4), libjpeg62-turbo (= 1:2.1.5-4), libjpeg62-turbo-dev (= 1:2.1.5-4), libjsoncpp26 (= 1.9.6-4), libk5crypto3 (= 1.21.3-5), libkadm5clnt-mit12 (= 1.21.3-5), libkadm5srv-mit12 (= 1.21.3-5), libkdb5-10t64 (= 1.21.3-5), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.21.3-5), libkrb5-dev (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), libldap-dev (= 2.6.10+dfsg-1), libldap2 (= 2.6.10+dfsg-1), liblsan0 (= 15.2.0-4), liblz4-1 (= 1.10.0-4), liblzma5 (= 5.8.1-2), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41.2-4), libmpc3 (= 1.3.1-2), libmpfr6 (= 4.2.2-2), libncursesw6 (= 6.5+20250216-2), libnettle8t64 (= 3.10.2-1), libnghttp2-14 (= 1.64.0-1.1+b1), libnghttp2-dev (= 1.64.0-1.1+b1), libnghttp3-9 (= 1.12.0-1), libnghttp3-dev (= 1.12.0-1), libngtcp2-16 (= 1.16.0-1), libngtcp2-crypto-ossl-dev (= 1.16.0-1), libngtcp2-crypto-ossl0 (= 1.16.0-1), libngtcp2-dev (= 1.16.0-1), libp11-kit-dev (= 0.25.9-2), libp11-kit0 (= 0.25.9-2), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.46-1), libperl5.40 (= 5.40.1-6), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libproc2-0 (= 2:4.0.4-9), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), libquadmath0 (= 15.2.0-4), libreadline8t64 (= 8.3-3), librhash1 (= 1.4.6-1), librtmp-dev (= 2.4+20151223.gitfa8646d.1-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-3), libsasl2-2 (= 2.1.28+dfsg1-10), libsasl2-modules-db (= 2.1.28+dfsg1-10), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe2 (= 2.45-7), libsmartcols1 (= 2.41.2-4), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.5.4-1), libssl3t64 (= 3.5.4-1), libstdc++-14-dev (= 14.3.0-8), libstdc++-15-dev (= 15.2.0-4), libstdc++6 (= 15.2.0-4), libsystemd0 (= 258.1-1), libsz2 (= 1.1.4-2), libtasn1-6 (= 4.20.0-2), libtasn1-6-dev (= 4.20.0-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-5), libtsan2 (= 15.2.0-4), libubsan1 (= 15.2.0-4), libuchardet0 (= 0.0.8-2), libudev1 (= 258.1-1), libunbound8 (= 1.24.0-2), libunistring5 (= 1.3-2), libuuid1 (= 2.41.2-4), libuv1t64 (= 1.51.0-2), libxml2-16 (= 2.14.6+dfsg-0.1), libxxhash0 (= 0.8.3-2), libzstd-dev (= 1.5.7+dfsg-2), libzstd1 (= 1.5.7+dfsg-2), linux-libc-dev (= 6.16.12-1), m4 (= 1.4.20-2), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), nettle-dev (= 3.10.2-1), openssl-provider-legacy (= 3.5.4-1), patch (= 2.8-2), perl (= 5.40.1-6), perl-base (= 5.40.1-6), perl-modules-5.40 (= 5.40.1-6), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-9), readline-common (= 8.3-3), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), util-linux (= 2.41.2-4), xz-utils (= 5.8.1-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1760820315" +------------------------------------------------------------------------------+ | Package contents Wed, 19 Nov 2025 00:47:03 +0000 | +------------------------------------------------------------------------------+ mapsembler2-dbgsym_2.2.4+dfsg1-5_amd64.deb ------------------------------------------ new Debian package, version 2.0. size 2533776 bytes: control archive=760 bytes. 522 bytes, 12 lines control 512 bytes, 5 lines md5sums Package: mapsembler2-dbgsym Source: mapsembler2 Version: 2.2.4+dfsg1-5 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 2791 Depends: mapsembler2 (= 2.2.4+dfsg1-5) Section: debug Priority: optional Description: debug symbols for mapsembler2 Build-Ids: 1026be5234f6ae3f4805591e3f3bb1089d0a2c2a 20907bb4af1daf3e28411fc594d73617c259b0d0 814eebc81b73bb11ab13043fa2f58c8f31a5c892 f252942f03fec10b82566884b62b1cef9011c424 drwxr-xr-x root/root 0 2025-10-18 20:45 ./ drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/ drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/lib/ drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/lib/debug/.build-id/10/ -rw-r--r-- root/root 418128 2025-10-18 20:45 ./usr/lib/debug/.build-id/10/26be5234f6ae3f4805591e3f3bb1089d0a2c2a.debug drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/lib/debug/.build-id/20/ -rw-r--r-- root/root 1466560 2025-10-18 20:45 ./usr/lib/debug/.build-id/20/907bb4af1daf3e28411fc594d73617c259b0d0.debug drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/lib/debug/.build-id/81/ -rw-r--r-- root/root 114096 2025-10-18 20:45 ./usr/lib/debug/.build-id/81/4eebc81b73bb11ab13043fa2f58c8f31a5c892.debug drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/lib/debug/.build-id/f2/ -rw-r--r-- root/root 803112 2025-10-18 20:45 ./usr/lib/debug/.build-id/f2/52942f03fec10b82566884b62b1cef9011c424.debug drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 37576 2025-10-18 20:45 ./usr/lib/debug/.dwz/x86_64-linux-gnu/mapsembler2.debug drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/share/ drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-10-18 20:45 ./usr/share/doc/mapsembler2-dbgsym -> mapsembler2 mapsembler2_2.2.4+dfsg1-5_amd64.deb ----------------------------------- new Debian package, version 2.0. size 736296 bytes: control archive=1836 bytes. 1397 bytes, 27 lines control 2274 bytes, 28 lines md5sums Package: mapsembler2 Version: 2.2.4+dfsg1-5 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1322 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.3.4), bc Section: science Priority: optional Homepage: http://colibread.inria.fr/mapsembler2/ Description: bioinformatics targeted assembly software Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters). . It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice. . Mapsembler2 may be used for (not limited to): - Validate an assembled sequence (input as starter), e.g. from a de Bruijn graph assembly where read-coherence was not enforced. - Checks if a gene (input as starter) has an homolog in a set of reads - Checks if a known enzyme is present in a metagenomic NGS read set. - Enrich unmappable reads by extending them, possibly making them mappable - Checks what happens at the extremities of a contig - Remove contaminants or symbiont reads from a read set drwxr-xr-x root/root 0 2025-10-18 20:45 ./ drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/ drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/bin/ lrwxrwxrwx root/root 0 2025-10-18 20:45 ./usr/bin/mapsembler2_extend -> mapsembler_extend -rwxr-xr-x root/root 375232 2025-10-18 20:45 ./usr/bin/mapsembler2_extremities -rwxr-xr-x root/root 80112 2025-10-18 20:45 ./usr/bin/mapsembler2_kissreads -rwxr-xr-x root/root 149848 2025-10-18 20:45 ./usr/bin/mapsembler2_kissreads_graph -rwxr-xr-x root/root 199192 2025-10-18 20:45 ./usr/bin/mapsembler_extend -rwxr-xr-x root/root 9585 2025-10-18 20:45 ./usr/bin/run_mapsembler2_pipeline drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/share/ drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/share/doc/mapsembler2/ -rw-r--r-- root/root 52 2014-09-11 15:09 ./usr/share/doc/mapsembler2/EXAMPLE.md -rw-r--r-- root/root 218 2025-10-18 20:45 ./usr/share/doc/mapsembler2/README.Debian -rw-r--r-- root/root 5260 2014-09-11 15:09 ./usr/share/doc/mapsembler2/README.md.gz -rw-r--r-- root/root 268 2025-10-18 20:45 ./usr/share/doc/mapsembler2/README.source -rw-r--r-- root/root 278 2025-10-18 20:45 ./usr/share/doc/mapsembler2/README.test -rw-r--r-- root/root 174 2025-10-18 20:45 ./usr/share/doc/mapsembler2/README.test_data -rw-r--r-- root/root 1301 2025-10-18 20:45 ./usr/share/doc/mapsembler2/changelog.Debian.gz -rw-r--r-- root/root 4017 2025-10-18 20:45 ./usr/share/doc/mapsembler2/copyright drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/share/doc/mapsembler2/examples/ -rw-r--r-- root/root 174 2025-10-18 20:45 ./usr/share/doc/mapsembler2/examples/README.test_data -rw-r--r-- root/root 229216 2025-10-18 20:45 ./usr/share/doc/mapsembler2/examples/reads1.fa.gz -rw-r--r-- root/root 229914 2025-10-18 20:45 ./usr/share/doc/mapsembler2/examples/reads2.fa.gz -rw-r--r-- root/root 3853 2025-10-18 20:45 ./usr/share/doc/mapsembler2/examples/ref-mapsembler2_extremities.out.fa -rw-r--r-- root/root 3537 2025-10-18 20:45 ./usr/share/doc/mapsembler2/examples/ref-reads1_coherent_k_31_c_5_t_1.fasta -rw-r--r-- root/root 0 2025-10-18 20:45 ./usr/share/doc/mapsembler2/examples/ref-reads1_uncoherent_k_31_c_5_t_1.fasta -rw-r--r-- root/root 25386 2025-10-18 20:45 ./usr/share/doc/mapsembler2/examples/ref-res_k_31_c_5_t_3_modified_and_covered.json -rw-r--r-- root/root 78 2025-10-18 20:45 ./usr/share/doc/mapsembler2/examples/ref-res_mapsembler_k_31_c_2_t_1.fasta -rw-r--r-- root/root 83 2014-08-11 09:29 ./usr/share/doc/mapsembler2/examples/starter.fa -rw-r--r-- root/root 2382 2025-10-18 20:45 ./usr/share/doc/mapsembler2/run-unit-test drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/share/man/ drwxr-xr-x root/root 0 2025-10-18 20:45 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-10-18 20:45 ./usr/share/man/man1/mapsembler2_extend.1.gz -> mapsembler_extend.1.gz -rw-r--r-- root/root 742 2025-10-18 20:45 ./usr/share/man/man1/mapsembler2_extremities.1.gz -rw-r--r-- root/root 1316 2025-10-18 20:45 ./usr/share/man/man1/mapsembler2_kissreads.1.gz -rw-r--r-- root/root 878 2025-10-18 20:45 ./usr/share/man/man1/mapsembler2_kissreads_graph.1.gz -rw-r--r-- root/root 1033 2025-10-18 20:45 ./usr/share/man/man1/mapsembler_extend.1.gz -rw-r--r-- root/root 1022 2025-10-18 20:45 ./usr/share/man/man1/run_mapsembler2_pipeline.1.gz +------------------------------------------------------------------------------+ | Post Build Wed, 19 Nov 2025 00:47:04 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Wed, 19 Nov 2025 00:47:04 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Wed, 19 Nov 2025 00:47:06 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 251896 Build-Time: 128 Distribution: unstable Host Architecture: amd64 Install-Time: 3 Job: /srv/rebuilderd/tmp/rebuilderdysqzXk/inputs/mapsembler2_2.2.4+dfsg1-5.dsc Machine Architecture: amd64 Package: mapsembler2 Package-Time: 142 Source-Version: 2.2.4+dfsg1-5 Space: 251896 Status: successful Version: 2.2.4+dfsg1-5 -------------------------------------------------------------------------------- Finished at 2025-11-19T00:47:01Z Build needed 00:02:22, 251896k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdysqzXk/out checking mapsembler2-dbgsym_2.2.4+dfsg1-5_amd64.deb: size differs for mapsembler2-dbgsym_2.2.4+dfsg1-5_amd64.deb