=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdfvZYXL/inputs/hmmer_3.4+dfsg-2+b2_arm64.buildinfo Source: hmmer Version: 3.4+dfsg-2 rebuilderd-worker node: codethink02-arm64 +------------------------------------------------------------------------------+ | Downloading sources Tue, 15 Jul 2025 15:14:12 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [168 kB] Get:2 https://deb.debian.org/debian sid InRelease [213 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [11.0 MB] Fetched 21.9 MB in 3s (7290 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.4%2bdfsg-2.dsc' hmmer_3.4+dfsg-2.dsc 2119 SHA256:28fa8e20c62b6fba8fcfd70c25bcc7d647fe47b871b10b132784660d61b2c413 'https://deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.4%2bdfsg.orig.tar.xz' hmmer_3.4+dfsg.orig.tar.xz 13297988 SHA256:87ada77366ed6ab0159a0c1217f8a55cbe9a708c4a98cf644929eb3703ce3309 'https://deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.4%2bdfsg-2.debian.tar.xz' hmmer_3.4+dfsg-2.debian.tar.xz 12792 SHA256:5f49627af6a005157803c635a39d6be1ab002135bb6d3082408ac1a718858cd4 87ada77366ed6ab0159a0c1217f8a55cbe9a708c4a98cf644929eb3703ce3309 hmmer_3.4+dfsg.orig.tar.xz 5f49627af6a005157803c635a39d6be1ab002135bb6d3082408ac1a718858cd4 hmmer_3.4+dfsg-2.debian.tar.xz 28fa8e20c62b6fba8fcfd70c25bcc7d647fe47b871b10b132784660d61b2c413 hmmer_3.4+dfsg-2.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Tue, 15 Jul 2025 15:14:16 +0000 | +------------------------------------------------------------------------------+ Rebuilding hmmer=3.4+dfsg-2 in /srv/rebuilderd/tmp/rebuilderdfvZYXL/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdfvZYXL/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdfvZYXL/inputs/hmmer_3.4+dfsg-2+b2_arm64.buildinfo /srv/rebuilderd/tmp/rebuilderdfvZYXL/inputs/hmmer_3.4+dfsg-2+b2_arm64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/hmmer-3.4+dfsg I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid InRelease [205 kB] Get:2 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 Packages [10.1 MB] Fetched 10.3 MB in 1s (9708 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20250406T210903Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libaudit-common all 1:4.0.2-2 [12.7 kB] Fetched 12.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.2-2_all.deb' to '/srv/rebuilderd/tmp/tmppnvaxk2s/libaudit-common_4.0.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libjansson4 arm64 2.14-2+b3 [39.2 kB] Fetched 39.2 kB in 0s (2217 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3xnpstmx/libjansson4_2.14-2+b3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 sysvinit-utils arm64 3.14-4 [34.0 kB] Fetched 34.0 kB in 0s (1926 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn90tcz5l/sysvinit-utils_3.14-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 dpkg-dev all 1.22.18 [1338 kB] Fetched 1338 kB in 0s (41.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkpid74x2/dpkg-dev_1.22.18_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libc6 arm64 2.41-6 [2487 kB] Fetched 2487 kB in 0s (111 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpofcr4343/libc6_2.41-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libgomp1 arm64 14.2.0-19 [124 kB] Fetched 124 kB in 0s (8466 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsd9yq5w_/libgomp1_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B] Fetched 4832 B in 0s (380 kB/s) dpkg-name: info: moved 'cpp-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpn1ukkan9/cpp-aarch64-linux-gnu_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libselinux1 arm64 3.8.1-1 [79.4 kB] Fetched 79.4 kB in 0s (6925 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpheau6un8/libselinux1_3.8.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B] Fetched 1200 B in 0s (72.7 kB/s) dpkg-name: info: moved 'g++-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp5oq394m3/g++-aarch64-linux-gnu_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 m4 arm64 1.4.19-7 [285 kB] Fetched 285 kB in 0s (15.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzecs6wr_/m4_1.4.19-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 perl-modules-5.40 all 5.40.1-2 [3017 kB] Fetched 3017 kB in 0s (140 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw8b21wox/perl-modules-5.40_5.40.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libdebconfclient0 arm64 0.278 [10.6 kB] Fetched 10.6 kB in 0s (691 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcxpzhsvx/libdebconfclient0_0.278_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libbz2-1.0 arm64 1.0.8-6 [37.8 kB] Fetched 37.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpptc25u8c/libbz2-1.0_1.0.8-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (6854 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzmu2nwhy/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 binutils arm64 2.44-3 [262 kB] Fetched 262 kB in 0s (13.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp15rpmvhs/binutils_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 coreutils arm64 9.6-2 [2926 kB] Fetched 2926 kB in 0s (71.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph582mrdc/coreutils_9.6-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (815 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1_xd71ej/netbase_6.5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libgcc-s1 arm64 14.2.0-19 [54.1 kB] Fetched 54.1 kB in 0s (3244 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb8wuirt8/libgcc-s1_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 gzip arm64 1.13-1 [135 kB] Fetched 135 kB in 0s (7674 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzzeflqa_/gzip_1.13-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 diffutils arm64 1:3.10-3 [378 kB] Fetched 378 kB in 0s (22.9 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpix6df7uu/diffutils_3.10-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B] Fetched 1568 B in 0s (28.5 kB/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpxhrkvtpz/cpp_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libpam-runtime all 1.7.0-3 [248 kB] Fetched 248 kB in 0s (13.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5neh7ltk/libpam-runtime_1.7.0-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libcrypt-dev arm64 1:4.4.38-1 [123 kB] Fetched 123 kB in 0s (7376 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpsl4wffbp/libcrypt-dev_4.4.38-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libgcc-14-dev arm64 14.2.0-19 [2359 kB] Fetched 2359 kB in 0s (90.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsz918_cx/libgcc-14-dev_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libsystemd0 arm64 257.4-9 [420 kB] Fetched 420 kB in 0s (21.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj0hrdpco/libsystemd0_257.4-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Fetched 21.2 kB in 0s (1318 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsk7446m7/libffi8_3.4.7-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libtool all 2.5.4-4 [539 kB] Fetched 539 kB in 0s (26.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpblk1uci0/libtool_2.5.4-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Fetched 69.2 kB in 0s (3978 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphbprh2aq/libuchardet0_0.0.8-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libpython3.13-minimal arm64 3.13.2-3 [855 kB] Fetched 855 kB in 0s (36.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjoopo8ez/libpython3.13-minimal_3.13.2-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 hostname arm64 3.25 [10.8 kB] Fetched 10.8 kB in 0s (685 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp17fmmpog/hostname_3.25_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 dpkg arm64 1.22.18 [1529 kB] Fetched 1529 kB in 0s (76.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfa0m3n4n/dpkg_1.22.18_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 sed arm64 4.9-2+b1 [326 kB] Fetched 326 kB in 0s (17.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjetsgw5/sed_4.9-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 dash arm64 0.5.12-12 [95.6 kB] Fetched 95.6 kB in 0s (5901 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjtm9bw0q/dash_0.5.12-12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 bzip2 arm64 1.0.8-6 [39.5 kB] Fetched 39.5 kB in 0s (2314 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2qae0pfm/bzip2_1.0.8-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 sensible-utils all 0.0.24 [24.8 kB] Fetched 24.8 kB in 0s (1497 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpko1y_29r/sensible-utils_0.0.24_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 base-passwd arm64 3.6.7 [53.4 kB] Fetched 53.4 kB in 0s (3220 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfuds94z1/base-passwd_3.6.7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B] Fetched 1440 B in 0s (89.8 kB/s) dpkg-name: info: moved 'gcc-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmppo5s0cy6/gcc-aarch64-linux-gnu_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 man-db arm64 2.13.0-1 [1404 kB] Fetched 1404 kB in 0s (90.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiz4co98r/man-db_2.13.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 python3 arm64 3.13.2-2 [28.1 kB] Fetched 28.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1gr6x4sd/python3_3.13.2-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 patch arm64 2.7.6-7+b1 [118 kB] Fetched 118 kB in 0s (11.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa2svjbjm/patch_2.7.6-7+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libubsan1 arm64 14.2.0-19 [1039 kB] Fetched 1039 kB in 0s (64.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6he1pgya/libubsan1_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-19 [17.7 MB] Fetched 17.7 MB in 0s (135 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpojlbtowi/gcc-14-aarch64-linux-gnu_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (3454 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwch4f08y/autotools-dev_20240727.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libssl3t64 arm64 3.4.1-1 [2636 kB] Fetched 2636 kB in 0s (144 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp773u1tip/libssl3t64_3.4.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libcrypt1 arm64 1:4.4.38-1 [91.8 kB] Fetched 91.8 kB in 0s (5353 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_arm64.deb' to '/srv/rebuilderd/tmp/tmppyhsfdwy/libcrypt1_4.4.38-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-19 [9169 kB] Fetched 9169 kB in 0s (155 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6v9erea5/cpp-14-aarch64-linux-gnu_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libcap-ng0 arm64 0.8.5-4+b1 [17.0 kB] Fetched 17.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfl1km0da/libcap-ng0_0.8.5-4+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libunistring5 arm64 1.3-2 [453 kB] Fetched 453 kB in 0s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5hmogqc6/libunistring5_1.3-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libzstd1 arm64 1.5.7+dfsg-1 [266 kB] Fetched 266 kB in 0s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi3_yk4sh/libzstd1_1.5.7+dfsg-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 linux-libc-dev all 6.12.21-1 [2542 kB] Fetched 2542 kB in 0s (68.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8rfiif64/linux-libc-dev_6.12.21-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 ncurses-bin arm64 6.5+20250216-2 [432 kB] Fetched 432 kB in 0s (35.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp68xifvvp/ncurses-bin_6.5+20250216-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 bsdextrautils arm64 2.41-3 [93.6 kB] Fetched 93.6 kB in 0s (3315 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpek0e_bn1/bsdextrautils_2.41-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 gcc-14-base arm64 14.2.0-19 [49.4 kB] Fetched 49.4 kB in 0s (3359 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu4bnrnd1/gcc-14-base_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libpcre2-8-0 arm64 10.45-1 [262 kB] Fetched 262 kB in 0s (16.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaueha0be/libpcre2-8-0_10.45-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libisl23 arm64 0.27-1 [601 kB] Fetched 601 kB in 0s (26.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj73qwvm5/libisl23_0.27-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 media-types all 13.0.0 [29.3 kB] Fetched 29.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8rxd_4yc/media-types_13.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libc-bin arm64 2.41-6 [549 kB] Fetched 549 kB in 0s (31.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpti1vn_7g/libc-bin_2.41-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libhwasan0 arm64 14.2.0-19 [1442 kB] Fetched 1442 kB in 0s (102 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpge8veyd7/libhwasan0_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libacl1 arm64 2.3.2-2+b1 [32.2 kB] Fetched 32.2 kB in 0s (2968 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg_vsw4qp/libacl1_2.3.2-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 debhelper all 13.24.2 [919 kB] Fetched 919 kB in 0s (37.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3jp9zkya/debhelper_13.24.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libctf-nobfd0 arm64 2.44-3 [152 kB] Fetched 152 kB in 0s (11.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_xc78rye/libctf-nobfd0_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libbinutils arm64 2.44-3 [660 kB] Fetched 660 kB in 0s (28.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8w0fr_r/libbinutils_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 liblastlog2-2 arm64 2.41-3 [28.1 kB] Fetched 28.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxruh_4s9/liblastlog2-2_2.41-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libmagic-mgc arm64 1:5.46-4 [337 kB] Fetched 337 kB in 0s (16.3 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpuye94hbs/libmagic-mgc_5.46-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libatomic1 arm64 14.2.0-19 [10.1 kB] Fetched 10.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl8r6gxwg/libatomic1_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 cpp-14 arm64 14.2.0-19 [1276 B] Fetched 1276 B in 0s (90.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg8nwaggq/cpp-14_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B] Fetched 5136 B in 0s (355 kB/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpmhohikmg/gcc_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Fetched 159 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg50_pliq/libreadline8t64_8.2-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Fetched 40.2 kB in 0s (2768 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi0wmakpc/libpipeline1_1.5.8-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 util-linux arm64 2.41-3 [1190 kB] Fetched 1190 kB in 0s (81.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpicpc98j_/util-linux_2.41-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 binutils-aarch64-linux-gnu arm64 2.44-3 [820 kB] Fetched 820 kB in 0s (54.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjv905ajw/binutils-aarch64-linux-gnu_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 file arm64 1:5.46-4 [43.6 kB] Fetched 43.6 kB in 0s (2557 kB/s) dpkg-name: info: moved 'file_1%3a5.46-4_arm64.deb' to '/srv/rebuilderd/tmp/tmp1u9617ao/file_5.46-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 automake all 1:1.17-4 [862 kB] Fetched 862 kB in 0s (45.1 MB/s) dpkg-name: info: moved 'automake_1%3a1.17-4_all.deb' to '/srv/rebuilderd/tmp/tmpj30jf399/automake_1.17-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 ncurses-base all 6.5+20250216-2 [273 kB] Fetched 273 kB in 0s (9456 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvf06sgu5/ncurses-base_6.5+20250216-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libmd0 arm64 1.1.0-2+b1 [33.7 kB] Fetched 33.7 kB in 0s (2842 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo6r0t1n4/libmd0_1.1.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libcap2 arm64 1:2.75-4 [27.3 kB] Fetched 27.3 kB in 0s (2095 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.75-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpfanmc5ux/libcap2_2.75-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Fetched 629 kB in 0s (26.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr9wtxdx_/libxml2_2.12.7+dfsg+really2.9.14-0.4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 tar arm64 1.35+dfsg-3.1 [802 kB] Fetched 802 kB in 0s (56.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_xu46vej/tar_1.35+dfsg-3.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 tzdata all 2025b-1 [259 kB] Fetched 259 kB in 0s (14.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptopyvjwd/tzdata_2025b-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libmount1 arm64 2.41-3 [198 kB] Fetched 198 kB in 0s (11.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe92sl82t/libmount1_2.41-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libpython3.13-stdlib arm64 3.13.2-3 [1887 kB] Fetched 1887 kB in 0s (53.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaejci1_q/libpython3.13-stdlib_3.13.2-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 readline-common all 8.2-6 [69.4 kB] Fetched 69.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkaf35kn4/readline-common_8.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 xz-utils arm64 5.8.1-1 [657 kB] Fetched 657 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmploa4_wcc/xz-utils_5.8.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Fetched 90.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn2nkyv30/libdebhelper-perl_13.24.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libgprofng0 arm64 2.44-3 [668 kB] Fetched 668 kB in 0s (60.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9_llvsm3/libgprofng0_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libaudit1 arm64 1:4.0.2-2+b2 [54.6 kB] Fetched 54.6 kB in 0s (4777 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.2-2+b2_arm64.deb' to '/srv/rebuilderd/tmp/tmp7l0_f6dc/libaudit1_4.0.2-2+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-19 [10.1 MB] Fetched 10.1 MB in 0s (165 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk8krbfcu/g++-14-aarch64-linux-gnu_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Fetched 93.3 kB in 0s (9170 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7tgsiu58/libexpat1_2.7.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 python3.13 arm64 3.13.2-3 [746 kB] Fetched 746 kB in 0s (53.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp34b5vx9e/python3.13_3.13.2-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 rpcsvc-proto arm64 1.4.3-1+b1 [60.5 kB] Fetched 60.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_1nc620g/rpcsvc-proto_1.4.3-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libcc1-0 arm64 14.2.0-19 [42.2 kB] Fetched 42.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfyqkv2yg/libcc1-0_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 binutils-common arm64 2.44-3 [2509 kB] Fetched 2509 kB in 0s (134 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxanyaq2o/binutils-common_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libperl5.40 arm64 5.40.1-2 [4143 kB] Fetched 4143 kB in 0s (137 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplv6bftu3/libperl5.40_5.40.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 bash arm64 5.2.37-1.1+b2 [1458 kB] Fetched 1458 kB in 0s (86.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2tncrnrg/bash_5.2.37-1.1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 make arm64 4.4.1-2 [452 kB] Fetched 452 kB in 0s (20.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbv7mnm2r/make_4.4.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libsqlite3-0 arm64 3.46.1-2 [852 kB] Fetched 852 kB in 0s (35.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5yu84700/libsqlite3-0_3.46.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libmpfr6 arm64 4.2.2-1 [685 kB] Fetched 685 kB in 0s (15.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8z4ptt9e/libmpfr6_4.2.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo42nd0sp/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp89v114qp/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libsmartcols1 arm64 2.41-3 [138 kB] Fetched 138 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp23gm0euw/libsmartcols1_2.41-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 liblzma5 arm64 5.8.1-1 [303 kB] Fetched 303 kB in 0s (24.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6tcpjnfl/liblzma5_5.8.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-9 [629 kB] Fetched 629 kB in 0s (41.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl362i4wr/libdb5.3t64_5.3.28+dfsg2-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (12.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy_oah2kz/debconf_1.5.91_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libitm1 arm64 14.2.0-19 [24.2 kB] Fetched 24.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzhv0w99b/libitm1_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 autopoint all 0.23.1-1 [770 kB] Fetched 770 kB in 0s (57.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyevtw9il/autopoint_0.23.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 python3-minimal arm64 3.13.2-2 [27.1 kB] Fetched 27.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd1n996rb/python3-minimal_3.13.2-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libgdbm6t64 arm64 1.24-2 [74.0 kB] Fetched 74.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnp_zi28c/libgdbm6t64_1.24-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Fetched 19.7 kB in 0s (1495 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfz1mu54d/libfile-stripnondeterminism-perl_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libstdc++6 arm64 14.2.0-19 [638 kB] Fetched 638 kB in 0s (35.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbky90n19/libstdc++6_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 bsdutils arm64 1:2.41-3 [108 kB] Fetched 108 kB in 0s (0 B/s) dpkg-name: info: moved 'bsdutils_1%3a2.41-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpvl02kpvw/bsdutils_2.41-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libtsan2 arm64 14.2.0-19 [2383 kB] Fetched 2383 kB in 0s (113 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo2bn2t2_/libtsan2_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 mawk arm64 1.3.4.20250131-1 [134 kB] Fetched 134 kB in 0s (11.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb166iuia/mawk_1.3.4.20250131-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libctf0 arm64 2.44-3 [84.2 kB] Fetched 84.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqxw6chng/libctf0_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libudev1 arm64 257.4-9 [143 kB] Fetched 143 kB in 0s (11.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp43869vrb/libudev1_257.4-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 openssl-provider-legacy arm64 3.4.1-1 [300 kB] Fetched 300 kB in 0s (27.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqj4xgksh/openssl-provider-legacy_3.4.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libstdc++-14-dev arm64 14.2.0-19 [2295 kB] Fetched 2295 kB in 0s (43.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnatdtpa4/libstdc++-14-dev_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libpam-modules arm64 1.7.0-3 [170 kB] Fetched 170 kB in 0s (16.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw1t97wto/libpam-modules_1.7.0-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libgmp10 arm64 2:6.3.0+dfsg-3 [535 kB] Fetched 535 kB in 0s (15.2 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpi4setm9t/libgmp10_6.3.0+dfsg-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Fetched 1129 kB in 0s (51.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl67emhqh/groff-base_1.23.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libdivsufsort-dev arm64 2.0.1-6+b1 [19.1 kB] Fetched 19.1 kB in 0s (1700 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxfu_6frw/libdivsufsort-dev_2.0.1-6+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 liblsan0 arm64 14.2.0-19 [1161 kB] Fetched 1161 kB in 0s (78.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpea8xne18/liblsan0_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 autoconf all 2.72-3 [493 kB] Fetched 493 kB in 0s (36.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpefw4w_ln/autoconf_2.72-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libtinfo6 arm64 6.5+20250216-2 [341 kB] Fetched 341 kB in 0s (23.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptkkzhhpn/libtinfo6_6.5+20250216-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 g++-14 arm64 14.2.0-19 [22.5 kB] Fetched 22.5 kB in 0s (2198 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7pvyn2o2/g++-14_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Fetched 8620 B in 0s (790 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp87q42jiu/dh-strip-nondeterminism_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 gettext arm64 0.23.1-1 [1610 kB] Fetched 1610 kB in 0s (113 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpps1j8g5s/gettext_0.23.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Fetched 189 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7bv1h7qv/libelf1t64_0.192-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 perl arm64 5.40.1-2 [267 kB] Fetched 267 kB in 0s (25.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfp5umvnc/perl_5.40.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libuuid1 arm64 2.41-3 [37.2 kB] Fetched 37.2 kB in 0s (3053 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpty8sj32x/libuuid1_2.41-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 build-essential arm64 12.12 [4624 B] Fetched 4624 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8bdz1nea/build-essential_12.12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libsframe1 arm64 2.44-3 [77.8 kB] Fetched 77.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpckuqvqdh/libsframe1_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 init-system-helpers all 1.68 [38.7 kB] Fetched 38.7 kB in 0s (3642 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_tl3szt6/init-system-helpers_1.68_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libmpc3 arm64 1.3.1-1+b3 [50.5 kB] Fetched 50.5 kB in 0s (5030 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7mir1_lx/libmpc3_1.3.1-1+b3_arm64.deb' Downloading dependency 1 of 159: libaudit-common:arm64=1:4.0.2-2 Downloading dependency 2 of 159: libjansson4:arm64=2.14-2+b3 Downloading dependency 3 of 159: sysvinit-utils:arm64=3.14-4 Downloading dependency 4 of 159: dpkg-dev:arm64=1.22.18 Downloading dependency 5 of 159: libc6:arm64=2.41-6 Downloading dependency 6 of 159: libgomp1:arm64=14.2.0-19 Downloading dependency 7 of 159: cpp-aarch64-linux-gnu:arm64=4:14.2.0-1 Downloading dependency 8 of 159: libselinux1:arm64=3.8.1-1 Downloading dependency 9 of 159: g++-aarch64-linux-gnu:arm64=4:14.2.0-1 Downloading dependency 10 of 159: m4:arm64=1.4.19-7 Downloading dependency 11 of 159: perl-modules-5.40:arm64=5.40.1-2 Downloading dependency 12 of 159: libdebconfclient0:arm64=0.278 Downloading dependency 13 of 159: libbz2-1.0:arm64=1.0.8-6 Downloading dependency 14 of 159: libarchive-zip-perl:arm64=1.68-1 Downloading dependency 15 of 159: binutils:arm64=2.44-3 Downloading dependency 16 of 159: coreutils:arm64=9.6-2 Downloading dependency 17 of 159: netbase:arm64=6.5 Downloading dependency 18 of 159: libgcc-s1:arm64=14.2.0-19 Downloading dependency 19 of 159: gzip:arm64=1.13-1 Downloading dependency 20 of 159: diffutils:arm64=1:3.10-3 Downloading dependency 21 of 159: cpp:arm64=4:14.2.0-1 Downloading dependency 22 of 159: libpam-runtime:arm64=1.7.0-3 Downloading dependency 23 of 159: libcrypt-dev:arm64=1:4.4.38-1 Downloading dependency 24 of 159: libgcc-14-dev:arm64=14.2.0-19 Downloading dependency 25 of 159: libsystemd0:arm64=257.4-9 Downloading dependency 26 of 159: libffi8:arm64=3.4.7-1 Downloading dependency 27 of 159: libtool:arm64=2.5.4-4 Downloading dependency 28 of 159: libuchardet0:arm64=0.0.8-1+b2 Downloading dependency 29 of 159: libpython3.13-minimal:arm64=3.13.2-3 Downloading dependency 30 of 159: hostname:arm64=3.25 Downloading dependency 31 of 159: dpkg:arm64=1.22.18 Downloading dependency 32 of 159: sed:arm64=4.9-2+b1 Downloading dependency 33 of 159: dash:arm64=0.5.12-12 Downloading dependency 34 of 159: bzip2:arm64=1.0.8-6 Downloading dependency 35 of 159: sensible-utils:arm64=0.0.24 Downloading dependency 36 of 159: base-passwd:arm64=3.6.7 Downloading dependency 37 of 159: gcc-aarch64-linux-gnu:arm64=4:14.2.0-1 Downloading dependency 38 of 159: man-db:arm64=2.13.0-1 Downloading dependency 39 of 159: python3:arm64=3.13.2-2 Downloading dependency 40 of 159: patch:arm64=2.7.6-7+b1 Downloading dependency 41 of 159: libubsan1:arm64=14.2.0-19 Downloading dependency 42 of 159: gcc-14-aarch64-linux-gnu:arm64=14.2.0-19 Downloading dependency 43 of 159: autotools-dev:arm64=20240727.1 Downloading dependency 44 of 159: libssl3t64:arm64=3.4.1-1 Downloading dependency 45 of 159: libcrypt1:arm64=1:4.4.38-1 Downloading dependency 46 of 159: cpp-14-aarch64-linux-gnu:arm64=14.2.0-19 Downloading dependency 47 of 159: libcap-ng0:arm64=0.8.5-4+b1 Downloading dependency 48 of 159: libunistring5:arm64=1.3-2 Downloading dependency 49 of 159: libzstd1:arm64=1.5.7+dfsg-1 Downloading dependency 50 of 159: linux-libc-dev:arm64=6.12.21-1 Downloading dependency 51 of 159: ncurses-bin:arm64=6.5+20250216-2 Downloading dependency 52 of 159: bsdextrautils:arm64=2.41-3 Downloading dependency 53 of 159: gcc-14-base:arm64=14.2.0-19 Downloading dependency 54 of 159: libpcre2-8-0:arm64=10.45-1 Downloading dependency 55 of 159: libisl23:arm64=0.27-1 Downloading dependency 56 of 159: media-types:arm64=13.0.0 Downloading dependency 57 of 159: libc-bin:arm64=2.41-6 Downloading dependency 58 of 159: libhwasan0:arm64=14.2.0-19 Downloading dependency 59 of 159: libacl1:arm64=2.3.2-2+b1 Downloading dependency 60 of 159: debhelper:arm64=13.24.2 Downloading dependency 61 of 159: libctf-nobfd0:arm64=2.44-3 Downloading dependency 62 of 159: libbinutils:arm64=2.44-3 Downloading dependency 63 of 159: liblastlog2-2:arm64=2.41-3 Downloading dependency 64 of 159: libmagic-mgc:arm64=1:5.46-4 Downloading dependency 65 of 159: libatomic1:arm64=14.2.0-19 Downloading dependency 66 of 159: cpp-14:arm64=14.2.0-19 Downloading dependency 67 of 159: gcc:arm64=4:14.2.0-1 Downloading dependency 68 of 159: libreadline8t64:arm64=8.2-6 Downloading dependency 69 of 159: libpipeline1:arm64=1.5.8-1 Downloading dependency 70 of 159: util-linux:arm64=2.41-3 Downloading dependency 71 of 159: binutils-aarch64-linux-gnu:arm64=2.44-3 Downloading dependency 72 of 159: file:arm64=1:5.46-4 Downloading dependency 73 of 159: automake:arm64=1:1.17-4 Downloading dependency 74 of 159: ncurses-base:arm64=6.5+20250216-2 Downloading dependency 75 of 159: libmd0:arm64=1.1.0-2+b1 Downloading dependency 76 of 159: libcap2:arm64=1:2.75-4 Downloading dependency 77 of 159: libxml2:arm64=2.12.7+dfsg+really2.9.14-0.4 Downloading dependency 78 of 159: tar:arm64=1.35+dfsg-3.1 Downloading dependency 79 of 159: tzdata:arm64=2025b-1 Downloading dependency 80 of 159: libmount1:arm64=2.41-3 Downloading dependency 81 of 159: libpython3.13-stdlib:arm64=3.13.2-3 Downloading dependency 82 of 159: readline-common:arm64=8.2-6 Downloading dependency 83 of 159: xz-utils:arm64=5.8.1-1 Downloading dependency 84 of 159: libdebhelper-perl:arm64=13.24.2 Downloading dependency 85 of 159: libgprofng0:arm64=2.44-3 Downloading dependency 86 of 159: libaudit1:arm64=1:4.0.2-2+b2 Downloading dependency 87 of 159: g++-14-aarch64-linux-gnu:arm64=14.2.0-19 Downloading dependency 88 of 159: libexpat1:arm64=2.7.1-1 Downloading dependency 89 of 159: python3.13:arm64=3.13.2-3 Downloading dependency 90 of 159: rpcsvc-proto:arm64=1.4.3-1+b1 Downloading dependency 91 of 159: libcc1-0:arm64=14.2.0-19 Downloading dependency 92 of 159: binutils-common:arm64=2.44-3 Downloading dependency 93 of 159: libperl5.40:arm64=5.40.1-2 Downloading dependency 94 of 159: bash:arm64=5.2.37-1.1+b2 Downloading dependency 95 of 159: make:arm64=4.4.1-2 Downloading dependency 96 of 159: libsqlite3-0:arm64=3.46.1-2 Downloading dependency 97 of 159: libmpfr6:arm64=4.2.2-1 Downloading dependency 98 of 159: intltool-debian:arm64=0.35.0+20060710.6 Downloading dependency 99 of 159: dh-autoreconf:arm64=20 Downloading dependency 100 of 159: libsmartcols1:arm64=2.41-3 Downloading dependency 101 of 159: liblzma5:arm64=5.8.1-1 Downloading dependency 102 of 159: libdb5.3t64:arm64=5.3.28+dfsg2-9 Downloading dependency 103 of 159: debconf:arm64=1.5.91 Downloading dependency 104 of 159: libitm1:arm64=14.2.0-19 Downloading dependency 105 of 159: autopoint:arm64=0.23.1-1 Downloading dependency 106 of 159: python3-minimal:arm64=3.13.2-2 Downloading dependency 107 of 159: libgdbm6t64:arm64=1.24-2 Downloading dependency 108 of 159: libfile-stripnondeterminism-perl:arm64=1.14.1-2 Downloading dependency 109 of 159: libstdc++6:arm64=14.2.0-19 Downloading dependency 110 of 159: bsdutils:arm64=1:2.41-3 Downloading dependency 111 of 159: libtsan2:arm64=14.2.0-19 Downloading dependency 112 of 159: mawk:arm64=1.3.4.20250131-1 Downloading dependency 113 of 159: libctf0:arm64=2.44-3 Downloading dependency 114 of 159: libudev1:arm64=257.4-9 Downloading dependency 115 of 159: openssl-provider-legacy:arm64=3.4.1-1 Downloading dependency 116 of 159: libstdc++-14-dev:arm64=14.2.0-19 Downloading dependency 117 of 159: libpam-modules:arm64=1.7.0-3 Downloading dependency 118 of 159: libgmp10:arm64=2:6.3.0+dfsg-3 Downloading dependency 119 of 159: groff-base:arm64=1.23.0-7 Downloading dependency 120 of 159: libdivsufsort-dev:arm64=2.0.1-6+b1 Downloading dependency 121 of 159: liblsan0:arm64=14.2.0-19 Downloading dependency 122 of 159: autoconf:arm64=2.72-3 Downloading dependency 123 of 159: libtinfo6:arm64=6.5+20250216-2 Downloading dependency 124 of 159: g++-14:arm64=14.2.0-19 Downloading dependency 125 of 159: dh-strip-nondeterminism:arm64=1.14.1-2 Downloading dependency 126 of 159: gettext:arm64=0.23.1-1 Downloading dependency 127 of 159: libelf1t64:arm64=0.192-4 Downloading dependency 128 of 159: perl:arm64=5.40.1-2 Downloading dependency 129 of 159: libuuid1:arm64=2.41-3 Downloading dependency 130 of 159: build-essential:arm64=12.12 Downloading dependency 131 of 159: libsframe1:arm64=2.44-3 Downloading dependency 132 of 159: init-system-helpers:arm64=1.68 Downloading dependency 133 of 159: libmpc3:arm64=1.3.1-1+b3 Downloading dependency 134 of 159: libpam-modules-bin:arm64=1.7.0-3Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libpam-modules-bin arm64 1.7.0-3 [48.0 kB] Fetched 48.0 kB in 0s (4796 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ndfdu5l/libpam-modules-bin_1.7.0-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 perl-base arm64 5.40.1-2 [1525 kB] Fetched 1525 kB in 0s (80.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0fopthc3/perl-base_5.40.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-1+b1 [85.1 kB] Fetched 85.1 kB in 0s (8223 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpt6k4bvvz/zlib1g_1.3.dfsg+really1.3.1-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libseccomp2 arm64 2.6.0-2 [51.0 kB] Fetched 51.0 kB in 0s (2399 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp31wtv6c7/libseccomp2_2.6.0-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 gcc-14 arm64 14.2.0-19 [529 kB] Fetched 529 kB in 0s (46.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpclffnxc3/gcc-14_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B] Fetched 1332 B in 0s (0 B/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp4o9p8l5m/g++_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Fetched 241 kB in 0s (23.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjaufg9kk/gettext-base_0.23.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 grep arm64 3.11-4+b1 [426 kB] Fetched 426 kB in 0s (34.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4_d9f7qg/grep_3.11-4+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libdivsufsort3 arm64 2.0.1-6+b1 [39.9 kB] Fetched 39.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjr44uqyr/libdivsufsort3_2.0.1-6+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libc-dev-bin arm64 2.41-6 [56.2 kB] Fetched 56.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqlkgnj0s/libc-dev-bin_2.41-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libdpkg-perl all 1.22.18 [649 kB] Fetched 649 kB in 0s (57.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpquhb8fch/libdpkg-perl_1.22.18_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 findutils arm64 4.10.0-3 [696 kB] Fetched 696 kB in 0s (6829 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_xjv5k9e/findutils_4.10.0-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libc6-dev arm64 2.41-6 [1621 kB] Fetched 1621 kB in 0s (64.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgeo352ef/libc6-dev_2.41-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 base-files arm64 13.7 [72.9 kB] Fetched 72.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnvfprqkr/base-files_13.7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libblkid1 arm64 2.41-3 [165 kB] Fetched 165 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg7fstezy/libblkid1_2.41-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 debianutils arm64 5.21 [92.1 kB] Fetched 92.1 kB in 0s (8410 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7p79zfec/debianutils_5.21_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libncursesw6 arm64 6.5+20250216-2 [124 kB] Fetched 124 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2mygucyy/libncursesw6_6.5+20250216-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libmagic1t64 arm64 1:5.46-4 [103 kB] Fetched 103 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-4_arm64.deb' to '/srv/rebuilderd/tmp/tmps362pu48/libmagic1t64_5.46-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 python3.13-minimal arm64 3.13.2-3 [1999 kB] Fetched 1999 kB in 0s (119 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_j28ajqs/python3.13-minimal_3.13.2-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libasan8 arm64 14.2.0-19 [2578 kB] Fetched 2578 kB in 0s (126 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpanm8xuut/libasan8_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libpam0g arm64 1.7.0-3 [68.6 kB] Fetched 68.6 kB in 0s (6181 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb2gqi3n2/libpam0g_1.7.0-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libpython3-stdlib arm64 3.13.2-2 [10.1 kB] Fetched 10.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1yh8m32z/libpython3-stdlib_3.13.2-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libattr1 arm64 1:2.5.2-3 [22.7 kB] Fetched 22.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpf928v1xb/libattr1_2.5.2-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (23.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1xexro5n/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 libgdbm-compat4t64 arm64 1.24-2 [50.3 kB] Fetched 50.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf2enadod/libgdbm-compat4t64_1.24-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main arm64 dwz arm64 0.15-1+b1 [102 kB] Fetched 102 kB in 0s (8960 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6jr0ot8i/dwz_0.15-1+b1_arm64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_arm64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpye0rv_ne/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture arm64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.dcOgbl09gJ as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.dcOgbl09gJ 127.0.0.1 - - [15/Jul/2025 16:15:27] code 404, message File not found 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:33143 ./ InRelease 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:33143 ./ Release [462 B] 127.0.0.1 - - [15/Jul/2025 16:15:27] code 404, message File not found 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:33143 ./ Release.gpg 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:33143 ./ Packages [193 kB] Fetched 194 kB in 0s (9435 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./gcc-14-base_14.2.0-19_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./libc6_2.41-6_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./libgcc-s1_14.2.0-19_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./mawk_1.3.4.20250131-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./base-files_13.7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./libtinfo6_6.5%2b20250216-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./debianutils_5.21_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./bash_5.2.37-1.1%2bb2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./libcap2_2.75-4_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./libsystemd0_257.4-9_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./bsdutils_2.41-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./libacl1_2.3.2-2%2bb1_arm64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./libsqlite3-0_3.46.1-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./liblastlog2-2_2.41-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./libmount1_2.41-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./libsmartcols1_2.41-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./libudev1_257.4-9_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./libuuid1_2.41-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./util-linux_2.41-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./libdebconfclient0_0.278_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./base-passwd_3.6.7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./init-system-helpers_1.68_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:27] "GET /./libc-bin_2.41-6_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - 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I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.dcOgbl09gJ 127.0.0.1 - - [15/Jul/2025 16:15:30] code 404, message File not found 127.0.0.1 - - [15/Jul/2025 16:15:30] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:33143 ./ InRelease 127.0.0.1 - - [15/Jul/2025 16:15:30] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:33143 ./ Release 127.0.0.1 - - [15/Jul/2025 16:15:30] code 404, message File not found 127.0.0.1 - - [15/Jul/2025 16:15:30] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:33143 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... 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127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./g%2b%2b-14-aarch64-linux-gnu_14.2.0-19_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./g%2b%2b-14_14.2.0-19_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./g%2b%2b-aarch64-linux-gnu_14.2.0-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./g%2b%2b_14.2.0-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./make_4.4.1-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./libdpkg-perl_1.22.18_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./patch_2.7.6-7%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./dpkg-dev_1.22.18_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./build-essential_12.12_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./libdebhelper-perl_13.24.2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./libtool_2.5.4-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./dh-autoreconf_20_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./libarchive-zip-perl_1.68-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./libfile-stripnondeterminism-perl_1.14.1-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./dh-strip-nondeterminism_1.14.1-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./libelf1t64_0.192-4_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./dwz_0.15-1%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./libunistring5_1.3-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./libxml2_2.12.7%2bdfsg%2breally2.9.14-0.4_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./gettext_0.23.1-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./intltool-debian_0.35.0%2b20060710.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./po-debconf_1.0.21%2bnmu1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./debhelper_13.24.2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./libdivsufsort3_2.0.1-6%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./libdivsufsort-dev_2.0.1-6%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jul/2025 16:15:38] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpye0rv_ne/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.dcOgbl09gJ Reading package lists... Building dependency tree... Reading state information... libaudit-common is already the newest version (1:4.0.2-2). libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. sysvinit-utils is already the newest version (3.14-4). dpkg-dev is already the newest version (1.22.18). dpkg-dev set to manually installed. libc6 is already the newest version (2.41-6). libgomp1 is already the newest version (14.2.0-19). libgomp1 set to manually installed. cpp-aarch64-linux-gnu is already the newest version (4:14.2.0-1). cpp-aarch64-linux-gnu set to manually installed. libselinux1 is already the newest version (3.8.1-1). g++-aarch64-linux-gnu is already the newest version (4:14.2.0-1). g++-aarch64-linux-gnu set to manually installed. m4 is already the newest version (1.4.19-7). m4 set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-2). perl-modules-5.40 set to manually installed. libdebconfclient0 is already the newest version (0.278). libbz2-1.0 is already the newest version (1.0.8-6). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. binutils is already the newest version (2.44-3). binutils set to manually installed. coreutils is already the newest version (9.6-2). netbase is already the newest version (6.5). netbase set to manually installed. libgcc-s1 is already the newest version (14.2.0-19). gzip is already the newest version (1.13-1). diffutils is already the newest version (1:3.10-3). cpp is already the newest version (4:14.2.0-1). cpp set to manually installed. libpam-runtime is already the newest version (1.7.0-3). libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. libgcc-14-dev is already the newest version (14.2.0-19). libgcc-14-dev set to manually installed. libsystemd0 is already the newest version (257.4-9). libffi8 is already the newest version (3.4.7-1). libffi8 set to manually installed. libtool is already the newest version (2.5.4-4). libtool set to manually installed. libuchardet0 is already the newest version (0.0.8-1+b2). libuchardet0 set to manually installed. libpython3.13-minimal is already the newest version (3.13.2-3). libpython3.13-minimal set to manually installed. hostname is already the newest version (3.25). dpkg is already the newest version (1.22.18). sed is already the newest version (4.9-2+b1). dash is already the newest version (0.5.12-12). bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. sensible-utils is already the newest version (0.0.24). sensible-utils set to manually installed. base-passwd is already the newest version (3.6.7). gcc-aarch64-linux-gnu is already the newest version (4:14.2.0-1). gcc-aarch64-linux-gnu set to manually installed. man-db is already the newest version (2.13.0-1). man-db set to manually installed. python3 is already the newest version (3.13.2-2). python3 set to manually installed. patch is already the newest version (2.7.6-7+b1). patch set to manually installed. libubsan1 is already the newest version (14.2.0-19). libubsan1 set to manually installed. gcc-14-aarch64-linux-gnu is already the newest version (14.2.0-19). gcc-14-aarch64-linux-gnu set to manually installed. autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. libssl3t64 is already the newest version (3.4.1-1). libcrypt1 is already the newest version (1:4.4.38-1). cpp-14-aarch64-linux-gnu is already the newest version (14.2.0-19). cpp-14-aarch64-linux-gnu set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b1). libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-1). linux-libc-dev is already the newest version (6.12.21-1). linux-libc-dev set to manually installed. ncurses-bin is already the newest version (6.5+20250216-2). bsdextrautils is already the newest version (2.41-3). bsdextrautils set to manually installed. gcc-14-base is already the newest version (14.2.0-19). libpcre2-8-0 is already the newest version (10.45-1). libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. media-types is already the newest version (13.0.0). media-types set to manually installed. libc-bin is already the newest version (2.41-6). libhwasan0 is already the newest version (14.2.0-19). libhwasan0 set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). debhelper is already the newest version (13.24.2). debhelper set to manually installed. libctf-nobfd0 is already the newest version (2.44-3). libctf-nobfd0 set to manually installed. libbinutils is already the newest version (2.44-3). libbinutils set to manually installed. liblastlog2-2 is already the newest version (2.41-3). libmagic-mgc is already the newest version (1:5.46-4). libmagic-mgc set to manually installed. libatomic1 is already the newest version (14.2.0-19). libatomic1 set to manually installed. cpp-14 is already the newest version (14.2.0-19). cpp-14 set to manually installed. gcc is already the newest version (4:14.2.0-1). gcc set to manually installed. libreadline8t64 is already the newest version (8.2-6). libreadline8t64 set to manually installed. libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. util-linux is already the newest version (2.41-3). binutils-aarch64-linux-gnu is already the newest version (2.44-3). binutils-aarch64-linux-gnu set to manually installed. file is already the newest version (1:5.46-4). file set to manually installed. automake is already the newest version (1:1.17-4). automake set to manually installed. ncurses-base is already the newest version (6.5+20250216-2). libmd0 is already the newest version (1.1.0-2+b1). libcap2 is already the newest version (1:2.75-4). libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-0.4). libxml2 set to manually installed. tar is already the newest version (1.35+dfsg-3.1). tzdata is already the newest version (2025b-1). tzdata set to manually installed. libmount1 is already the newest version (2.41-3). libpython3.13-stdlib is already the newest version (3.13.2-3). libpython3.13-stdlib set to manually installed. readline-common is already the newest version (8.2-6). readline-common set to manually installed. xz-utils is already the newest version (5.8.1-1). xz-utils set to manually installed. libdebhelper-perl is already the newest version (13.24.2). libdebhelper-perl set to manually installed. libgprofng0 is already the newest version (2.44-3). libgprofng0 set to manually installed. libaudit1 is already the newest version (1:4.0.2-2+b2). g++-14-aarch64-linux-gnu is already the newest version (14.2.0-19). g++-14-aarch64-linux-gnu set to manually installed. libexpat1 is already the newest version (2.7.1-1). libexpat1 set to manually installed. python3.13 is already the newest version (3.13.2-3). python3.13 set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1+b1). rpcsvc-proto set to manually installed. libcc1-0 is already the newest version (14.2.0-19). libcc1-0 set to manually installed. binutils-common is already the newest version (2.44-3). binutils-common set to manually installed. libperl5.40 is already the newest version (5.40.1-2). libperl5.40 set to manually installed. bash is already the newest version (5.2.37-1.1+b2). make is already the newest version (4.4.1-2). make set to manually installed. libsqlite3-0 is already the newest version (3.46.1-2). libmpfr6 is already the newest version (4.2.2-1). libmpfr6 set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. libsmartcols1 is already the newest version (2.41-3). liblzma5 is already the newest version (5.8.1-1). libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). debconf is already the newest version (1.5.91). libitm1 is already the newest version (14.2.0-19). libitm1 set to manually installed. autopoint is already the newest version (0.23.1-1). autopoint set to manually installed. python3-minimal is already the newest version (3.13.2-2). python3-minimal set to manually installed. libgdbm6t64 is already the newest version (1.24-2). libgdbm6t64 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.14.1-2). libfile-stripnondeterminism-perl set to manually installed. libstdc++6 is already the newest version (14.2.0-19). libstdc++6 set to manually installed. bsdutils is already the newest version (1:2.41-3). libtsan2 is already the newest version (14.2.0-19). libtsan2 set to manually installed. mawk is already the newest version (1.3.4.20250131-1). libctf0 is already the newest version (2.44-3). libctf0 set to manually installed. libudev1 is already the newest version (257.4-9). openssl-provider-legacy is already the newest version (3.4.1-1). libstdc++-14-dev is already the newest version (14.2.0-19). libstdc++-14-dev set to manually installed. libpam-modules is already the newest version (1.7.0-3). libgmp10 is already the newest version (2:6.3.0+dfsg-3). groff-base is already the newest version (1.23.0-7). groff-base set to manually installed. libdivsufsort-dev is already the newest version (2.0.1-6+b1). libdivsufsort-dev set to manually installed. liblsan0 is already the newest version (14.2.0-19). liblsan0 set to manually installed. autoconf is already the newest version (2.72-3). autoconf set to manually installed. libtinfo6 is already the newest version (6.5+20250216-2). g++-14 is already the newest version (14.2.0-19). g++-14 set to manually installed. dh-strip-nondeterminism is already the newest version (1.14.1-2). dh-strip-nondeterminism set to manually installed. gettext is already the newest version (0.23.1-1). gettext set to manually installed. libelf1t64 is already the newest version (0.192-4). libelf1t64 set to manually installed. perl is already the newest version (5.40.1-2). perl set to manually installed. libuuid1 is already the newest version (2.41-3). build-essential is already the newest version (12.12). build-essential set to manually installed. libsframe1 is already the newest version (2.44-3). libsframe1 set to manually installed. init-system-helpers is already the newest version (1.68). libmpc3 is already the newest version (1.3.1-1+b3). libmpc3 set to manually installed. libpam-modules-bin is already the newest version (1.7.0-3). perl-base is already the newest version (5.40.1-2). zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). libseccomp2 is already the newest version (2.6.0-2). libseccomp2 set to manually installed. gcc-14 is already the newest version (14.2.0-19). gcc-14 set to manually installed. g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. gettext-base is already the newest version (0.23.1-1). gettext-base set to manually installed. grep is already the newest version (3.11-4+b1). libdivsufsort3 is already the newest version (2.0.1-6+b1). libdivsufsort3 set to manually installed. libc-dev-bin is already the newest version (2.41-6). libc-dev-bin set to manually installed. libdpkg-perl is already the newest version (1.22.18). libdpkg-perl set to manually installed. findutils is already the newest version (4.10.0-3). libc6-dev is already the newest version (2.41-6). libc6-dev set to manually installed. base-files is already the newest version (13.7). libblkid1 is already the newest version (2.41-3). debianutils is already the newest version (5.21). libncursesw6 is already the newest version (6.5+20250216-2). libncursesw6 set to manually installed. libmagic1t64 is already the newest version (1:5.46-4). libmagic1t64 set to manually installed. python3.13-minimal is already the newest version (3.13.2-3). python3.13-minimal set to manually installed. libasan8 is already the newest version (14.2.0-19). libasan8 set to manually installed. libpam0g is already the newest version (1.7.0-3). libpython3-stdlib is already the newest version (3.13.2-2). libpython3-stdlib set to manually installed. libattr1 is already the newest version (1:2.5.2-3). po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libgdbm-compat4t64 is already the newest version (1.24-2). libgdbm-compat4t64 set to manually installed. dwz is already the newest version (0.15-1+b1). dwz set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.dcOgbl09gJ (Reading database ... 14927 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.dcOgbl09gJ I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.dcOgbl09gJ I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.dcOgbl09gJ... I: success in 31.9142 seconds Downloading dependency 135 of 159: perl-base:arm64=5.40.1-2 Downloading dependency 136 of 159: zlib1g:arm64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 137 of 159: libseccomp2:arm64=2.6.0-2 Downloading dependency 138 of 159: gcc-14:arm64=14.2.0-19 Downloading dependency 139 of 159: g++:arm64=4:14.2.0-1 Downloading dependency 140 of 159: gettext-base:arm64=0.23.1-1 Downloading dependency 141 of 159: grep:arm64=3.11-4+b1 Downloading dependency 142 of 159: libdivsufsort3:arm64=2.0.1-6+b1 Downloading dependency 143 of 159: libc-dev-bin:arm64=2.41-6 Downloading dependency 144 of 159: libdpkg-perl:arm64=1.22.18 Downloading dependency 145 of 159: findutils:arm64=4.10.0-3 Downloading dependency 146 of 159: libc6-dev:arm64=2.41-6 Downloading dependency 147 of 159: base-files:arm64=13.7 Downloading dependency 148 of 159: libblkid1:arm64=2.41-3 Downloading dependency 149 of 159: debianutils:arm64=5.21 Downloading dependency 150 of 159: libncursesw6:arm64=6.5+20250216-2 Downloading dependency 151 of 159: libmagic1t64:arm64=1:5.46-4 Downloading dependency 152 of 159: python3.13-minimal:arm64=3.13.2-3 Downloading dependency 153 of 159: libasan8:arm64=14.2.0-19 Downloading dependency 154 of 159: libpam0g:arm64=1.7.0-3 Downloading dependency 155 of 159: libpython3-stdlib:arm64=3.13.2-2 Downloading dependency 156 of 159: libattr1:arm64=1:2.5.2-3 Downloading dependency 157 of 159: po-debconf:arm64=1.0.21+nmu1 Downloading dependency 158 of 159: libgdbm-compat4t64:arm64=1.24-2 Downloading dependency 159 of 159: dwz:arm64=0.15-1+b1 env --chdir=/srv/rebuilderd/tmp/rebuilderdfvZYXL/out DEB_BUILD_OPTIONS=parallel=4 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1744046740 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildQRJNcD/debrebuild.sbuildrc.j0N4A2RduvLE sbuild --build=arm64 --host=arm64 --no-source --arch-any --no-arch-all --binNMU-changelog= hmmer (3.4+dfsg-2+b2) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for arm64; no source changes. * Rebuild with sbuild 0.88.1 to address #1089088 -- arm Build Daemon (arm-ubc-02) Mon, 07 Apr 2025 17:25:40 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildQRJNcD/debrebuild.tar.90Ruk8Zj2iTj --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=hmmer-3.4+dfsg /srv/rebuilderd/tmp/rebuilderdfvZYXL/inputs/hmmer_3.4+dfsg-2.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3 (07 June 2025) on codethink02-arm64 +==============================================================================+ | hmmer 3.4+dfsg-2+b2 (arm64) Tue, 15 Jul 2025 15:16:00 +0000 | +==============================================================================+ Package: hmmer Version: 3.4+dfsg-2+b2 Source Version: 3.4+dfsg-2 Distribution: unstable Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildQRJNcD/debrebuild.tar.90Ruk8Zj2iTj to /srv/rebuilderd/tmp/tmp.sbuild.oHESg1Wfka... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Tue, 15 Jul 2025 15:16:05 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdfvZYXL/inputs/hmmer_3.4+dfsg-2.dsc exists in /srv/rebuilderd/tmp/rebuilderdfvZYXL/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Tue, 15 Jul 2025 15:16:07 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3, build-essential Filtered Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-3sNci1/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Tue, 15 Jul 2025 15:16:10 +0000 | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) +------------------------------------------------------------------------------+ | Build environment Tue, 15 Jul 2025 15:16:11 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.35+deb13-cloud-arm64 #1 SMP Debian 6.12.35-1 (2025-07-03) arm64 (aarch64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.18 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-6 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 linux-libc-dev_6.12.21-1 Package versions: autoconf_2.72-3 automake_1:1.17-4 autopoint_0.23.1-1 autotools-dev_20240727.1 base-files_13.7 base-passwd_3.6.7 bash_5.2.37-1.1+b2 binutils_2.44-3 binutils-aarch64-linux-gnu_2.44-3 binutils-common_2.44-3 bsdextrautils_2.41-3 bsdutils_1:2.41-3 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.6-2 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-aarch64-linux-gnu_14.2.0-19 cpp-aarch64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-3 dpkg_1.22.18 dpkg-dev_1.22.18 dwz_0.15-1+b1 file_1:5.46-4 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-aarch64-linux-gnu_14.2.0-19 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-aarch64-linux-gnu_14.2.0-19 gcc-14-base_14.2.0-19 gcc-aarch64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4+b1 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libatomic1_14.2.0-19 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblkid1_2.41-3 libbz2-1.0_1.0.8-6 libc-bin_2.41-6 libc-dev-bin_2.41-6 libc6_2.41-6 libc6-dev_2.41-6 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-4 libcc1-0_14.2.0-19 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.278 libdebhelper-perl_13.24.2 libdivsufsort-dev_2.0.1-6+b1 libdivsufsort3_2.0.1-6+b1 libdpkg-perl_1.22.18 libelf1t64_0.192-4 libexpat1_2.7.1-1 libffi8_3.4.7-1 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.2.0-19 libgcc-s1_14.2.0-19 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgomp1_14.2.0-19 libgprofng0_2.44-3 libhwasan0_14.2.0-19 libisl23_0.27-1 libitm1_14.2.0-19 libjansson4_2.14-2+b3 liblastlog2-2_2.41-3 liblsan0_14.2.0-19 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-4 libmagic1t64_1:5.46-4 libmd0_1.1.0-2+b1 libmount1_2.41-3 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-2 libpipeline1_1.5.8-1 libpython3-stdlib_3.13.2-2 libpython3.13-minimal_3.13.2-3 libpython3.13-stdlib_3.13.2-3 libreadline8t64_8.2-6 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.41-3 libsqlite3-0_3.46.1-2 libssl3t64_3.4.1-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 libsystemd0_257.4-9 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libuchardet0_0.0.8-1+b2 libudev1_257.4-9 libunistring5_1.3-2 libuuid1_2.41-3 libxml2_2.12.7+dfsg+really2.9.14-0.4 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.21-1 m4_1.4.19-7 make_4.4.1-2 man-db_2.13.0-1 mawk_1.3.4.20250131-1 media-types_13.0.0 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 openssl-provider-legacy_3.4.1-1 patch_2.7.6-7+b1 perl_5.40.1-2 perl-base_5.40.1-2 perl-modules-5.40_5.40.1-2 po-debconf_1.0.21+nmu1 python3_3.13.2-2 python3-minimal_3.13.2-2 python3.13_3.13.2-3 python3.13-minimal_3.13.2-3 readline-common_8.2-6 rpcsvc-proto_1.4.3-1+b1 sed_4.9-2+b1 sensible-utils_0.0.24 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-1 util-linux_2.41-3 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Tue, 15 Jul 2025 15:16:11 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hmmer Binary: hmmer, hmmer-doc, hmmer-examples Architecture: any all Version: 3.4+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://hmmer.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/hmmer Vcs-Git: https://salsa.debian.org/med-team/hmmer.git Testsuite: autopkgtest Testsuite-Triggers: python3 Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3 Package-List: hmmer deb science optional arch=any-amd64,any-i386,arm64,powerpc,ppc64,x32 hmmer-doc deb doc optional arch=all hmmer-examples deb doc optional arch=any Checksums-Sha1: 69590adb499ca8e4eea9d2ed10fb66ae42e82ea8 13297988 hmmer_3.4+dfsg.orig.tar.xz 0fdc1387c061446ae90aa1bad78311b91d9613be 12792 hmmer_3.4+dfsg-2.debian.tar.xz Checksums-Sha256: 87ada77366ed6ab0159a0c1217f8a55cbe9a708c4a98cf644929eb3703ce3309 13297988 hmmer_3.4+dfsg.orig.tar.xz 5f49627af6a005157803c635a39d6be1ab002135bb6d3082408ac1a718858cd4 12792 hmmer_3.4+dfsg-2.debian.tar.xz Files: ac66418b48c613d96d43770f971a22d3 13297988 hmmer_3.4+dfsg.orig.tar.xz 052bc782e23681c65ad490638bc541c4 12792 hmmer_3.4+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmUEEYcACgkQPCZ2P2xn 5uJeeA//QPIKXLp1rvwSccWCMJj318Vrd0delJgACzsfhnxnNyUsZ5aBUWwefLvY 1EfijVSrLpR55GC+4QsLVxwgDEEPbR2pHh0ZoVFhPDisRf7SQe2wCQBDrdmLYdPR 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fix_manpage_extension.patch dpkg-source: info: applying use_debian_packaged_libdivsufsort.patch dpkg-source: info: applying verbose-easel dpkg-source: info: applying skip_threads_check dpkg-source: info: applying sub_make_parallel dpkg-source: info: applying spelling Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 3.4+dfsg-2+b2 User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1744046740 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package hmmer dpkg-buildpackage: info: source version 3.4+dfsg-2+b2 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by arm Build Daemon (arm-ubc-02) dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from hmmer-3.4+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_auto_clean rm -f testsuite/esltmp* rm -f easel/testsuite/esltmp* rm -f tutorial/MADE1.hmm.h3? rm -f config.log config.status configure find . -name Makefile -delete make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' AUTOHEADER=true dh_autoreconf make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" dh_auto_configure -- --enable-threads --enable-neon ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-threads --enable-neon configure: Configuring HMMER3 for your system. checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu ./configure: line 3043: [: -gt: unary operator expected ./configure: line 3045: [: -eq: unary operator expected checking whether to compile using MPI... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for gcc... (cached) gcc checking whether the compiler supports GNU C... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to enable C11 features... (cached) none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking for strip... strip checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether ln -s works... yes checking for a sed that does not truncate output... /usr/bin/sed checking for egrep -e... /usr/bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with "-pthread" and "-lpthread"... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether gcc can compile our NEON code... yes, aarch64 flavor checking whether gcc can compile our Altivec/VMX code... no checking whether gcc can compile our SSE code... no checking whether gcc can compile our NEON code... yes, aarch64 flavor configure: Activating ARM Neon vector DP implementation checking compiler support --start-group... yes checking for gzip... /usr/bin/gzip checking for python3... yes checking for library containing clock_gettime... none required checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking for netinet/in.h... yes checking for sys/param.h... yes checking for sys/sysctl.h... no checking for arm_neon.h... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking whether byte ordering is bigendian... no checking whether C compiler accepts -mlittle-endian... yes checking for __attribute__((noreturn))... yes checking for __attribute__((format))... yes checking for mkstemp... yes checking for popen... yes checking for putenv... yes checking for strcasecmp... yes checking for strsep... yes checking for times... yes checking for getpid... yes checking for sysctl... no checking for sysconf... yes checking for getcwd... yes checking for chmod... yes checking for stat... yes checking for fstat... yes checking for erfc... no checking for library containing ntohs... none required checking for library containing ntohl... none required checking for library containing htons... none required checking for library containing htonl... none required checking for library containing socket... none required checking for library containing inet_pton... none required checking for declarations of fseeko and ftello... yes checking for gcc option to enable large file support... none needed configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_neon/Makefile config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating documentation/userguide/Makefile config.status: creating documentation/userguide/inclusions/Makefile config.status: creating easel/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/documentation/Makefile config.status: creating documentation/userguide/titlepage.tex config.status: creating documentation/userguide/titlepage_daemon.tex config.status: creating documentation/userguide/copyright.tex config.status: creating documentation/man/alimask.man config.status: creating documentation/man/hmmalign.man config.status: creating documentation/man/hmmbuild.man config.status: creating documentation/man/hmmc2.man config.status: creating documentation/man/hmmconvert.man config.status: creating documentation/man/hmmemit.man config.status: creating documentation/man/hmmer.man config.status: creating documentation/man/hmmfetch.man config.status: creating documentation/man/hmmlogo.man config.status: creating documentation/man/hmmpgmd.man config.status: creating documentation/man/hmmpgmd_shard.man config.status: creating documentation/man/hmmpress.man config.status: creating documentation/man/hmmscan.man config.status: creating documentation/man/hmmsearch.man config.status: creating documentation/man/hmmsim.man config.status: creating documentation/man/hmmstat.man config.status: creating documentation/man/jackhmmer.man config.status: creating documentation/man/makehmmerdb.man config.status: creating documentation/man/nhmmer.man config.status: creating documentation/man/nhmmscan.man config.status: creating documentation/man/phmmer.man config.status: creating easel/miniapps/esl-afetch.man config.status: creating easel/miniapps/esl-alimanip.man config.status: creating easel/miniapps/esl-alimap.man config.status: creating easel/miniapps/esl-alimask.man config.status: creating easel/miniapps/esl-alimerge.man config.status: creating easel/miniapps/esl-alipid.man config.status: creating easel/miniapps/esl-alirev.man config.status: creating easel/miniapps/esl-alistat.man config.status: creating easel/miniapps/esl-compalign.man config.status: creating easel/miniapps/esl-compstruct.man config.status: creating easel/miniapps/esl-construct.man config.status: creating easel/miniapps/esl-histplot.man config.status: creating easel/miniapps/esl-mask.man config.status: creating easel/miniapps/esl-mixdchlet.man config.status: creating easel/miniapps/esl-reformat.man config.status: creating easel/miniapps/esl-selectn.man config.status: creating easel/miniapps/esl-seqrange.man config.status: creating easel/miniapps/esl-seqstat.man config.status: creating easel/miniapps/esl-sfetch.man config.status: creating easel/miniapps/esl-shuffle.man config.status: creating easel/miniapps/esl-ssdraw.man config.status: creating easel/miniapps/esl-translate.man config.status: creating easel/miniapps/esl-weight.man config.status: creating easel/decoy_config.h config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: linking src/impl_neon to src/impl HMMER configuration: compiler: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -mlittle-endian -pthread host: aarch64-unknown-linux-gnu linker: -Wl,-z,relro -Wl,-z,now -flto libraries: -lpthread DP implementation: neon Now do 'make' to build HMMER, and optionally: 'make check' to run self tests, 'make install' to install programs and man pages, '(cd easel; make install)' to install Easel tools. make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' export V=VERBOSE ; dh_auto_build make -j4 make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make -C easel all make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c easel.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_alloc.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_alphabet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_arr2.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_arr3.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_bitfield.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_buffer.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_cluster.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_composition.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_cpu.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_dirichlet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_distance.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_dmatrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_dsqdata.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_exponential.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_fileparser.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_gamma.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_gencode.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_getopts.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_gev.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_graph.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_gumbel.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_heap.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_histogram.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_hmm.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_huffman.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_hyperexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_iset.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_json.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_keyhash.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_lognormal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_matrixops.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_mem.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_minimizer.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_mixdchlet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_mixgev.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_mpi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_msa.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_msacluster.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_msafile.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_msafile2.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_msafile_a2m.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_msafile_afa.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_msafile_clustal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_msafile_phylip.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_msafile_psiblast.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_msafile_selex.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_msafile_stockholm.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_msashuffle.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_msaweight.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_normal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_paml.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_quicksort.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_random.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_rand64.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_randomseq.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_ratematrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_recorder.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_red_black.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_regexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_rootfinder.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_scorematrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_sq.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_sqio.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_sqio_ascii.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_sqio_ncbi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_ssi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_stack.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_stats.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_stopwatch.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_stretchexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_subcmd.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_threads.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_tree.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_varint.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_vectorops.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_weibull.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_workqueue.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_wuss.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_sse.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_avx.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_avx512.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -c esl_neon.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -c esl_vmx.c /usr/bin/ar -r libeasel.a easel.o esl_alloc.o esl_alphabet.o esl_arr2.o esl_arr3.o esl_bitfield.o esl_buffer.o esl_cluster.o esl_composition.o esl_cpu.o esl_dirichlet.o esl_distance.o esl_dmatrix.o esl_dsqdata.o esl_exponential.o esl_fileparser.o esl_gamma.o esl_gencode.o esl_getopts.o esl_gev.o esl_graph.o esl_gumbel.o esl_heap.o esl_histogram.o esl_hmm.o esl_huffman.o esl_hyperexp.o esl_iset.o esl_json.o esl_keyhash.o esl_lognormal.o esl_matrixops.o esl_mem.o esl_minimizer.o esl_mixdchlet.o esl_mixgev.o esl_mpi.o esl_msa.o esl_msacluster.o esl_msafile.o esl_msafile2.o esl_msafile_a2m.o esl_msafile_afa.o esl_msafile_clustal.o esl_msafile_phylip.o esl_msafile_psiblast.o esl_msafile_selex.o esl_msafile_stockholm.o esl_msashuffle.o esl_msaweight.o esl_normal.o esl_paml.o esl_quicksort.o esl_random.o esl_rand64.o esl_randomseq.o esl_ratematrix.o esl_recorder.o esl_red_black.o esl_regexp.o esl_rootfinder.o esl_scorematrix.o esl_sq.o esl_sqio.o esl_sqio_ascii.o esl_sqio_ncbi.o esl_ssi.o esl_stack.o esl_stats.o esl_stopwatch.o esl_stretchexp.o esl_subcmd.o esl_threads.o esl_tree.o esl_varint.o esl_vectorops.o esl_weibull.o esl_workqueue.o esl_wuss.o esl_sse.o esl_avx.o esl_avx512.o esl_neon.o esl_vmx.o > /dev/null 2>&1 make -C miniapps all make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-afetch esl-afetch.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimanip esl-alimanip.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimap esl-alimap.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimask esl-alimask.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimerge esl-alimerge.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alipid esl-alipid.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alirev esl-alirev.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alistat esl-alistat.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compalign esl-compalign.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compstruct esl-compstruct.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-construct esl-construct.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-histplot esl-histplot.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mask esl-mask.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mixdchlet esl-mixdchlet.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-reformat esl-reformat.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-selectn esl-selectn.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqrange esl-seqrange.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqstat esl-seqstat.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-sfetch esl-sfetch.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-shuffle esl-shuffle.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-ssdraw esl-ssdraw.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-translate esl-translate.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-weight esl-weight.c -leasel -lpthread -lm gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -c cmd_alistat.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -c cmd_downsample.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -c cmd_filter.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -c cmd_index.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o easel easel.c cmd_alistat.o cmd_downsample.o cmd_filter.o cmd_index.o -leasel -lpthread -lm make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C src all make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o alimask.o -c alimask.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o build.o -c build.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb.o -c cachedb.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb_shard.o -c cachedb_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o emit.o -c emit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o errors.o -c errors.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o evalues.o -c evalues.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o eweight.o -c eweight.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_decoding.o -c generic_decoding.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback.o -c generic_fwdback.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_chk.o -c generic_fwdback_chk.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_banded.o -c generic_fwdback_banded.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_null2.o -c generic_null2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_msv.o -c generic_msv.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_optacc.o -c generic_optacc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_stotrace.o -c generic_stotrace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_viterbi.o -c generic_viterbi.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_vtrace.o -c generic_vtrace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o h2_io.o -c h2_io.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o heatmap.o -c heatmap.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmlogo.o -c hmmlogo.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr.o -c hmmdmstr.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr_shard.o -c hmmdmstr_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmd_search_status.o -c hmmd_search_status.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr.o -c hmmdwrkr.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr_shard.o -c hmmdwrkr_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdutils.o -c hmmdutils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmer.o -c hmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o logsum.o -c logsum.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelconfig.o -c modelconfig.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelstats.o -c modelstats.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o mpisupport.o -c mpisupport.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o seqmodel.o -c seqmodel.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o tracealign.o -c tracealign.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_alidisplay.o -c p7_alidisplay.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_bg.o -c p7_bg.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_builder.o -c p7_builder.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domain.o -c p7_domain.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domaindef.o -c p7_domaindef.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gbands.o -c p7_gbands.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmx.o -c p7_gmx.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxb.o -c p7_gmxb.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxchk.o -c p7_gmxchk.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hit.o -c p7_hit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmm.o -c p7_hmm.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmcache.o -c p7_hmmcache.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmd_search_stats.o -c p7_hmmd_search_stats.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmfile.o -c p7_hmmfile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmwindow.o -c p7_hmmwindow.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_pipeline.o -c p7_pipeline.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_prior.o -c p7_prior.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_profile.o -c p7_profile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_spensemble.o -c p7_spensemble.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_tophits.o -c p7_tophits.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_trace.o -c p7_trace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_scoredata.o -c p7_scoredata.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd2msa.o -c hmmpgmd2msa.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_alphabet.o -c fm_alphabet.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_general.o -c fm_general.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_sse.o -c fm_sse.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_ssv.o -c fm_ssv.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmalign.o -c hmmalign.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmbuild.o -c hmmbuild.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmconvert.o -c hmmconvert.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmemit.o -c hmmemit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmfetch.o -c hmmfetch.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd.o -c hmmpgmd.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd_shard.o -c hmmpgmd_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpress.o -c hmmpress.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmscan.o -c hmmscan.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsearch.o -c hmmsearch.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsim.o -c hmmsim.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmstat.o -c hmmstat.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o jackhmmer.o -c jackhmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o phmmer.o -c phmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmer.o -c nhmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmscan.o -c nhmmscan.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o makehmmerdb.o -c makehmmerdb.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmc2.o -c hmmc2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmerfm-exactmatch.o -c hmmerfm-exactmatch.c /usr/bin/ar -r libhmmer.a build.o cachedb.o cachedb_shard.o emit.o errors.o evalues.o eweight.o generic_decoding.o generic_fwdback.o generic_fwdback_chk.o generic_fwdback_banded.o generic_null2.o generic_msv.o generic_optacc.o generic_stotrace.o generic_viterbi.o generic_vtrace.o h2_io.o heatmap.o hmmlogo.o hmmdmstr.o hmmdmstr_shard.o hmmd_search_status.o hmmdwrkr.o hmmdwrkr_shard.o hmmdutils.o hmmer.o logsum.o modelconfig.o modelstats.o mpisupport.o seqmodel.o tracealign.o p7_alidisplay.o p7_bg.o p7_builder.o p7_domain.o p7_domaindef.o p7_gbands.o p7_gmx.o p7_gmxb.o p7_gmxchk.o p7_hit.o p7_hmm.o p7_hmmcache.o p7_hmmd_search_stats.o p7_hmmfile.o p7_hmmwindow.o p7_pipeline.o p7_prior.o p7_profile.o p7_spensemble.o p7_tophits.o p7_trace.o p7_scoredata.o hmmpgmd2msa.o fm_alphabet.o fm_general.o fm_sse.o fm_ssv.o > /dev/null 2>&1 make -C impl_neon libhmmer-impl.stamp make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o decoding.o -c decoding.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o fwdback.o -c fwdback.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o io.o -c io.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o ssvfilter.o -c ssvfilter.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o msvfilter.o -c msvfilter.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o null2.o -c null2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o optacc.o -c optacc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o stotrace.o -c stotrace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o vitfilter.o -c vitfilter.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_omx.o -c p7_omx.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_oprofile.o -c p7_oprofile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o mpi.o -c mpi.c /usr/bin/ar -r ../libhmmer.a decoding.o fwdback.o io.o ssvfilter.o msvfilter.o null2.o optacc.o stotrace.o vitfilter.o p7_omx.o p7_oprofile.o mpi.o > /dev/null 2>&1 make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o alimask alimask.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmalign hmmalign.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmbuild hmmbuild.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmconvert hmmconvert.o -lhmmer -leasel -ldivsufsort -lpthread -lm ../easel/esl_scorematrix.c: In function ‘esl_scorematrix_Create’: ../easel/esl_scorematrix.c:71:3: warning: argument 1 range [18446744071562067969, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 71 | ESL_ALLOC(S->outorder, sizeof(char) * (abc->Kp+1)); | ^ /usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmemit hmmemit.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmfetch hmmfetch.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmlogo hmmlogo.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmpgmd hmmpgmd.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmpgmd_shard hmmpgmd_shard.o -lhmmer -leasel -ldivsufsort -lpthread -lm ../easel/esl_scorematrix.c: In function ‘esl_scorematrix_Create’: ../easel/esl_scorematrix.c:71:3: warning: argument 1 range [18446744071562067969, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 71 | ESL_ALLOC(S->outorder, sizeof(char) * (abc->Kp+1)); | ^ /usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^ ../easel/esl_scorematrix.c: In function ‘esl_scorematrix_Create’: ../easel/esl_scorematrix.c:71:3: warning: argument 1 range [18446744071562067969, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 71 | ESL_ALLOC(S->outorder, sizeof(char) * (abc->Kp+1)); | ^ /usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmpress hmmpress.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmscan hmmscan.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmsearch hmmsearch.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmsim hmmsim.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmstat hmmstat.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o jackhmmer jackhmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o phmmer phmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm ../easel/esl_scorematrix.c: In function ‘esl_scorematrix_Create’: ../easel/esl_scorematrix.c:71:3: warning: argument 1 range [18446744071562067969, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 71 | ESL_ALLOC(S->outorder, sizeof(char) * (abc->Kp+1)); | ^ /usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o nhmmer nhmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm ../easel/esl_scorematrix.c: In function ‘esl_scorematrix_Create’: ../easel/esl_scorematrix.c:71:3: warning: argument 1 range [18446744071562067969, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 71 | ESL_ALLOC(S->outorder, sizeof(char) * (abc->Kp+1)); | ^ /usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o nhmmscan nhmmscan.o -lhmmer -leasel -ldivsufsort -lpthread -lm ../easel/esl_scorematrix.c: In function ‘esl_scorematrix_Create’: ../easel/esl_scorematrix.c:71:3: warning: argument 1 range [18446744071562067969, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 71 | ESL_ALLOC(S->outorder, sizeof(char) * (abc->Kp+1)); | ^ /usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o makehmmerdb makehmmerdb.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmc2 hmmc2.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmerfm-exactmatch hmmerfm-exactmatch.o -lhmmer -leasel -ldivsufsort -lpthread -lm make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C profmark all make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/profmark' gcc -I../easel -I../easel -I../src -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -o create-profmark.o -c create-profmark.c gcc -I../easel -I../easel -I../src -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -o rocplot.o -c rocplot.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o rocplot rocplot.o -lhmmer -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o create-profmark create-profmark.o -lhmmer -leasel -lpthread -lm make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/profmark' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' export V=VERBOSE ; make check -j12 | tee debian/test_log make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make -C easel tests make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o easel_utest -I. -I. -L. -DeslEASEL_TESTDRIVE ./easel.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alloc_utest -I. -I. -L. -DeslALLOC_TESTDRIVE ./esl_alloc.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_buffer_utest -I. -I. -L. -DeslBUFFER_TESTDRIVE ./esl_buffer.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_bitfield_utest -I. -I. -L. -DeslBITFIELD_TESTDRIVE ./esl_bitfield.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alphabet_utest -I. -I. -L. -DeslALPHABET_TESTDRIVE ./esl_alphabet.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cluster_utest -I. -I. -L. -DeslCLUSTER_TESTDRIVE ./esl_cluster.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cpu_utest -I. -I. -L. -DeslCPU_TESTDRIVE ./esl_cpu.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dsqdata_utest -I. -I. -L. -DeslDSQDATA_TESTDRIVE ./esl_dsqdata.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dirichlet_utest -I. -I. -L. -DeslDIRICHLET_TESTDRIVE ./esl_dirichlet.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_distance_utest -I. -I. -L. -DeslDISTANCE_TESTDRIVE ./esl_distance.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_exponential_utest -I. -I. -L. -DeslEXPONENTIAL_TESTDRIVE ./esl_exponential.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dmatrix_utest -I. -I. -L. -DeslDMATRIX_TESTDRIVE ./esl_dmatrix.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_fileparser_utest -I. -I. -L. -DeslFILEPARSER_TESTDRIVE ./esl_fileparser.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gamma_utest -I. -I. -L. -DeslGAMMA_TESTDRIVE ./esl_gamma.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gencode_utest -I. -I. -L. -DeslGENCODE_TESTDRIVE ./esl_gencode.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_getopts_utest -I. -I. -L. -DeslGETOPTS_TESTDRIVE ./esl_getopts.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_graph_utest -I. -I. -L. -DeslGRAPH_TESTDRIVE ./esl_graph.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gumbel_utest -I. -I. -L. -DeslGUMBEL_TESTDRIVE ./esl_gumbel.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_heap_utest -I. -I. -L. -DeslHEAP_TESTDRIVE ./esl_heap.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_histogram_utest -I. -I. -L. -DeslHISTOGRAM_TESTDRIVE ./esl_histogram.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hmm_utest -I. -I. -L. -DeslHMM_TESTDRIVE ./esl_hmm.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_huffman_utest -I. -I. -L. -DeslHUFFMAN_TESTDRIVE ./esl_huffman.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hyperexp_utest -I. -I. -L. -DeslHYPEREXP_TESTDRIVE ./esl_hyperexp.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_iset_utest -I. -I. -L. -DeslISET_TESTDRIVE ./esl_iset.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_json_utest -I. -I. -L. -DeslJSON_TESTDRIVE ./esl_json.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_keyhash_utest -I. -I. -L. -DeslKEYHASH_TESTDRIVE ./esl_keyhash.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_lognormal_utest -I. -I. -L. -DeslLOGNORMAL_TESTDRIVE ./esl_lognormal.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_matrixops_utest -I. -I. -L. -DeslMATRIXOPS_TESTDRIVE ./esl_matrixops.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mem_utest -I. -I. -L. -DeslMEM_TESTDRIVE ./esl_mem.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_minimizer_utest -I. -I. -L. -DeslMINIMIZER_TESTDRIVE ./esl_minimizer.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mixdchlet_utest -I. -I. -L. -DeslMIXDCHLET_TESTDRIVE ./esl_mixdchlet.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msa_utest -I. -I. -L. -DeslMSA_TESTDRIVE ./esl_msa.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msacluster_utest -I. -I. -L. -DeslMSACLUSTER_TESTDRIVE ./esl_msacluster.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_utest -I. -I. -L. -DeslMSAFILE_TESTDRIVE ./esl_msafile.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile2_utest -I. -I. -L. -DeslMSAFILE2_TESTDRIVE ./esl_msafile2.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_a2m_utest -I. -I. -L. -DeslMSAFILE_A2M_TESTDRIVE ./esl_msafile_a2m.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_afa_utest -I. -I. -L. -DeslMSAFILE_AFA_TESTDRIVE ./esl_msafile_afa.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_clustal_utest -I. -I. -L. -DeslMSAFILE_CLUSTAL_TESTDRIVE ./esl_msafile_clustal.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_phylip_utest -I. -I. -L. -DeslMSAFILE_PHYLIP_TESTDRIVE ./esl_msafile_phylip.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_psiblast_utest -I. -I. -L. -DeslMSAFILE_PSIBLAST_TESTDRIVE ./esl_msafile_psiblast.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_selex_utest -I. -I. -L. -DeslMSAFILE_SELEX_TESTDRIVE ./esl_msafile_selex.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_stockholm_utest -I. -I. -L. -DeslMSAFILE_STOCKHOLM_TESTDRIVE ./esl_msafile_stockholm.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msaweight_utest -I. -I. -L. -DeslMSAWEIGHT_TESTDRIVE ./esl_msaweight.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_normal_utest -I. -I. -L. -DeslNORMAL_TESTDRIVE ./esl_normal.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_quicksort_utest -I. -I. -L. -DeslQUICKSORT_TESTDRIVE ./esl_quicksort.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_random_utest -I. -I. -L. -DeslRANDOM_TESTDRIVE ./esl_random.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rand64_utest -I. -I. -L. -DeslRAND64_TESTDRIVE ./esl_rand64.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_randomseq_utest -I. -I. -L. -DeslRANDOMSEQ_TESTDRIVE ./esl_randomseq.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ratematrix_utest -I. -I. -L. -DeslRATEMATRIX_TESTDRIVE ./esl_ratematrix.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_red_black_utest -I. -I. -L. -DeslRED_BLACK_TESTDRIVE ./esl_red_black.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_recorder_utest -I. -I. -L. -DeslRECORDER_TESTDRIVE ./esl_recorder.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_regexp_utest -I. -I. -L. -DeslREGEXP_TESTDRIVE ./esl_regexp.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rootfinder_utest -I. -I. -L. -DeslROOTFINDER_TESTDRIVE ./esl_rootfinder.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_scorematrix_utest -I. -I. -L. -DeslSCOREMATRIX_TESTDRIVE ./esl_scorematrix.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sq_utest -I. -I. -L. -DeslSQ_TESTDRIVE ./esl_sq.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sqio_utest -I. -I. -L. -DeslSQIO_TESTDRIVE ./esl_sqio.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ssi_utest -I. -I. -L. -DeslSSI_TESTDRIVE ./esl_ssi.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stack_utest -I. -I. -L. -DeslSTACK_TESTDRIVE ./esl_stack.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stats_utest -I. -I. -L. -DeslSTATS_TESTDRIVE ./esl_stats.c -leasel -lm -lpthread ./esl_scorematrix.c: In function ‘esl_scorematrix_Create’: ./esl_scorematrix.c:71:3: warning: argument 1 range [18446744071562067969, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 71 | ESL_ALLOC(S->outorder, sizeof(char) * (abc->Kp+1)); | ^ /usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^ gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stretchexp_utest -I. -I. -L. -DeslSTRETCHEXP_TESTDRIVE ./esl_stretchexp.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_tree_utest -I. -I. -L. -DeslTREE_TESTDRIVE ./esl_tree.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_varint_utest -I. -I. -L. -DeslVARINT_TESTDRIVE ./esl_varint.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vectorops_utest -I. -I. -L. -DeslVECTOROPS_TESTDRIVE ./esl_vectorops.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_weibull_utest -I. -I. -L. -DeslWEIBULL_TESTDRIVE ./esl_weibull.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_wuss_utest -I. -I. -L. -DeslWUSS_TESTDRIVE ./esl_wuss.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sse_utest -I. -I. -L. -DeslSSE_TESTDRIVE ./esl_sse.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx_utest -I. -I. -L. -DeslAVX_TESTDRIVE ./esl_avx.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx512_utest -I. -I. -L. -DeslAVX512_TESTDRIVE ./esl_avx512.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_neon_utest -I. -I. -L. -DeslNEON_TESTDRIVE ./esl_neon.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vmx_utest -I. -I. -L. -DeslVMX_TESTDRIVE ./esl_vmx.c -leasel -lm -lpthread make -C miniapps tests make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[4]: Nothing to be done for 'tests'. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C src tests make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C impl_neon libhmmer-impl.stamp gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o itest_brute.o -c itest_brute.c make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' make[4]: 'libhmmer-impl.stamp' is up to date. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7BUILD_TESTDRIVE -o build_utest ./build.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_TESTDRIVE -o generic_fwdback_utest ./generic_fwdback.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_MSV_TESTDRIVE -o generic_msv_utest ./generic_msv.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_CHK_TESTDRIVE -o generic_fwdback_chk_utest ./generic_fwdback_chk.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_STOTRACE_TESTDRIVE -o generic_stotrace_utest ./generic_stotrace.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_VITERBI_TESTDRIVE -o generic_viterbi_utest ./generic_viterbi.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7MODELCONFIG_TESTDRIVE -o modelconfig_utest ./modelconfig.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMER_TESTDRIVE -o hmmer_utest ./hmmer.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7LOGSUM_TESTDRIVE -o logsum_utest ./logsum.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7ALIDISPLAY_TESTDRIVE -o p7_alidisplay_utest ./p7_alidisplay.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7SEQMODEL_TESTDRIVE -o seqmodel_utest ./seqmodel.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7BG_TESTDRIVE -o p7_bg_utest ./p7_bg.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7DOMAIN_TESTDRIVE -o p7_domain_utest ./p7_domain.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GMX_TESTDRIVE -o p7_gmx_utest ./p7_gmx.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GMXCHK_TESTDRIVE -o p7_gmxchk_utest ./p7_gmxchk.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HIT_TESTDRIVE -o p7_hit_utest ./p7_hit.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATS_TESTDRIVE -o p7_hmmd_search_stats_utest ./p7_hmmd_search_stats.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMM_TESTDRIVE -o p7_hmm_utest ./p7_hmm.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMFILE_TESTDRIVE -o p7_hmmfile_utest ./p7_hmmfile.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7PROFILE_TESTDRIVE -o p7_profile_utest ./p7_profile.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7TOPHITS_TESTDRIVE -o p7_tophits_utest ./p7_tophits.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7TRACE_TESTDRIVE -o p7_trace_utest ./p7_trace.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7SCOREDATA_TESTDRIVE -o p7_scoredata_utest ./p7_scoredata.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMPGMD2MSA_TESTDRIVE -o hmmpgmd2msa_utest ./hmmpgmd2msa.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATUS_TESTDRIVE -o hmmd_search_status_utest ./hmmd_search_status.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o itest_brute itest_brute.o -lhmmer -leasel -ldivsufsort -lpthread -lm make -C impl_neon tests make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7IO_TESTDRIVE -o io_utest ./io.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7DECODING_TESTDRIVE -o decoding_utest ./decoding.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7NULL2_TESTDRIVE -o null2_utest ./null2.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7MSVFILTER_TESTDRIVE -o msvfilter_utest ./msvfilter.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7FWDBACK_TESTDRIVE -o fwdback_utest ./fwdback.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7STOTRACE_TESTDRIVE -o stotrace_utest ./stotrace.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7VITFILTER_TESTDRIVE -o vitfilter_utest ./vitfilter.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -pthread -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7OPTACC_TESTDRIVE -o optacc_utest ./optacc.c -lhmmer -leasel -lm make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C easel check make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C miniapps check make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make -C testsuite check make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/testsuite' Running Easel test suite... exercise 1 [ easel-utest] ... ok. exercise 2 [ alloc-utest] ... ok. exercise 3 [ alphabet-utest] ... ok. exercise 4 [ avx-utest] ... ok. exercise 5 [ avx512-utest] ... ok. exercise 6 [ bitfield-utest] ... ok. exercise 7 [ buffer-utest] ... ok. exercise 8 [ cluster-utest] ... ok. exercise 9 [ cpu-utest] ... ok. exercise 10 [ dirichlet-utest] ... ok. exercise 11 [ distance-utest] ... ok. exercise 12 [ dmatrix-utest] ... ok. exercise 13 [ dsqdata-utest] ... ok. exercise 14 [ exponential-utest] ... ok. exercise 15 [ fileparser-utest] ... ok. exercise 16 [ gamma-utest] ... ok. exercise 17 [ gencode-utest] ... ok. exercise 18 [ getopts-utest] ... ok. exercise 19 [ graph-utest] ... ok. exercise 20 [ gumbel-utest] ... ok. exercise 21 [ heap-utest] ... ok. exercise 22 [ histogram-utest] ... ok. exercise 23 [ huffman-utest] ... ok. exercise 24 [ hyperexp-utest] ... ok. exercise 25 [ iset-utest] ... ok. exercise 26 [ json-utest] ... ok. exercise 27 [ keyhash-utest] ... ok. exercise 28 [ lognormal-utest] ... ok. exercise 29 [ matrixops-utest] ... ok. exercise 30 [ mem-utest] ... ok. exercise 31 [ minimizer-utest] ... ok. exercise 32 [ mixdchlet-utest] ... ok. exercise 33 [ msa-utest] ... ok. exercise 34 [ msacluster-utest] ... ok. exercise 35 [ msafile] ... ok. exercise 36 [ msafile2] ... ok. exercise 37 [ msafile-a2m] ... ok. exercise 38 [ msafile-afa] ... ok. exercise 39 [ msafile-clustal] ... ok. exercise 40 [ msafile-phylip] ... ok. exercise 41 [ msafile-psiblast] ... ok. exercise 42 [ msafile-selex] ... ok. exercise 43 [ msafile-stockholm] ... ok. exercise 44 [ msaweight-utest] ... ok. exercise 45 [ neon-utest] ... ok. exercise 46 [ normal-utest] ... ok. exercise 47 [ quicksort-utest] ... ok. exercise 48 [ random-utest] ... ok. exercise 49 [ rand64-utest] ... ok. exercise 50 [ randomseq-utest] ... ok. exercise 51 [ ratematrix-utest] ... ok. exercise 52 [ recorder-utest] ... ok. exercise 53 [ red_black-utest] ... ok. exercise 54 [ regexp-utest] ... ok. exercise 55 [ rootfinder-utest] ... ok. exercise 56 [ scorematrix-utest] ... ok. exercise 57 [ sq-utest] ... ok. exercise 58 [ sqio-utest] ... ok. exercise 59 [ sse-utest] ... ok. exercise 60 [ ssi-utest] ... ok. exercise 61 [ stack-utest] ... ok. exercise 62 [ stats-utest] ... ok. exercise 63 [ stretchexp-utest] ... ok. exercise 64 [ tree-utest] ... ok. exercise 65 [ varint-utest] ... ok. exercise 66 [ vectorops-utest] ... ok. exercise 67 [ vmx-utest] ... ok. exercise 68 [ weibull-utest] ... ok. exercise 69 [ wuss-utest] ... ok. exercise 70 [ e2] ... ok. exercise 71 [ degen-residues] ... ok. exercise 72 [ ncbi-indices] ... ok. exercise 73 [ blank-gf] ... ok. exercise 74 [ sindi] ... ok. exercise 75 [ esl-translate] ... ok. exercise 76 [ esl-afetch] ... ok. exercise 77 [ esl-alimanip] ... ok. exercise 78 [ esl-alimap] ... ok. exercise 79 [ esl-alimask] ... ok. exercise 80 [ esl-alimerge] ... ok. exercise 81 [ esl-alistat] ... ok. exercise 82 [ esl-compalign] ... ok. exercise 83 [ esl-construct] ... ok. exercise 84 [ esl-mask] ... ok. exercise 85 [ esl-seqrange] ... ok. exercise 86 [ esl-shuffle] ... ok. exercise 87 [ esl-ssdraw] ... ok. All 87 exercises at level <= 2 passed. System information: Tue Jul 15 15:19:55 UTC 2025 Linux sbuild 6.12.35+deb13-cloud-arm64 #1 SMP Debian 6.12.35-1 (2025-07-03) aarch64 GNU/Linux make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/testsuite' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C testsuite check make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/testsuite' Running HMMER test suite... exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... ok. exercise 6 [ generic_viterbi] ... ok. exercise 7 [ hmmd_search_status] ... ok. exercise 8 [ logsum] ... ok. exercise 9 [ modelconfig] ... ok. exercise 10 [ seqmodel] ... ok. exercise 11 [ p7_alidisplay] ... ok. exercise 12 [ p7_bg] ... ok. exercise 13 [ p7_domain] ... ok. exercise 14 [ p7_gmx] ... ok. exercise 15 [ p7_hit] ... ok. exercise 16 [ p7_hmm] ... ok. exercise 17 [ p7_hmmfile] ... ok. exercise 18 [ p7_hmmd_search_stats] ... ok. exercise 19 [ p7_profile] ... ok. exercise 20 [ p7_tophits] ... ok. exercise 21 [ p7_trace] ... ok. exercise 22 [ p7_scoredata] ... ok. exercise 23 [ decoding] ... ok. exercise 24 [ fwdback] ... ok. exercise 25 [ io] ... ok. exercise 26 [ msvfilter] ... ok. exercise 27 [ null2] ... ok. exercise 28 [ optacc] ... ok. exercise 29 [ stotrace] ... ok. exercise 30 [ vitfilter] ... ok. exercise 31 [ hmmpgmd2msa] ... ok. exercise 32 [ hmmalign] ... ok. exercise 33 [ hmmalign/-h] ... ok. exercise 34 [ hmmalign/-o] ... ok. exercise 35 [ hmmalign/--mapali] ... ok. exercise 36 [ hmmalign/--trim] ... ok. exercise 37 [ hmmalign/--amino] ... ok. exercise 38 [ hmmalign/--informat] ... ok. exercise 39 [ hmmalign/--outformat] ... ok. exercise 40 [ hmmbuild] ... ok. exercise 41 [ build/-h] ... ok. exercise 42 [ build/-n] ... ok. exercise 43 [ build/-o] ... ok. exercise 44 [ build/-O] ... ok. exercise 45 [ build/--amino] ... ok. exercise 46 [ build/--dna] ... ok. exercise 47 [ build/--rna] ... ok. exercise 48 [ build/--fast] ... ok. exercise 49 [ build/--hand] ... ok. exercise 50 [ build/--symfrac] ... ok. exercise 51 [ build/--fragthresh] ... ok. exercise 52 [ build/--wpb] ... ok. exercise 53 [ build/--wgsc] ... ok. exercise 54 [ build/--wblosum] ... ok. exercise 55 [ build/--wnone] ... ok. exercise 56 [ build/--wid] ... ok. exercise 57 [ build/--eent] ... ok. exercise 58 [ build/--eclust] ... ok. exercise 59 [ build/--enone] ... ok. exercise 60 [ build/--eset] ... ok. exercise 61 [ build/--ere] ... ok. exercise 62 [ build/--esigma] ... ok. exercise 63 [ build/--eid] ... ok. exercise 64 [ build/--pnone] ... ok. exercise 65 [ build/--plaplace] ... ok. exercise 66 [ build/--EmL] ... ok. exercise 67 [ build/--EmN] ... ok. exercise 68 [ build/--EvL] ... ok. exercise 69 [ build/--EvN] ... ok. exercise 70 [ build/--EfL] ... ok. exercise 71 [ build/--EfN] ... ok. exercise 72 [ build/--Eft] ... ok. exercise 73 [ build/--informat] ... ok. exercise 74 [ build/--seed] ... ok. exercise 75 [ search] ... ok. exercise 76 [ search/-h] ... ok. exercise 77 [ search/-o] ... ok. exercise 78 [ search/-A] ... ok. exercise 79 [ search/--tblout] ... ok. exercise 80 [ search/--domtblout] ... ok. exercise 81 [ search/--pfamtblout] ... ok. exercise 82 [ search/--acc] ... ok. exercise 83 [ search/--noali] ... ok. exercise 84 [ search/--notextw] ... ok. exercise 85 [ search/--textw] ... ok. exercise 86 [ search/-E] ... ok. exercise 87 [ search/-T] ... ok. exercise 88 [ search/--domE] ... ok. exercise 89 [ search/--domT] ... ok. exercise 90 [ search/--incE] ... ok. exercise 91 [ search/--incT] ... ok. exercise 92 [ search/--incdomE] ... ok. exercise 93 [ search/--incdomT] ... ok. exercise 94 [ search/--cut_ga] ... ok. exercise 95 [ search/--cut_nc] ... ok. exercise 96 [ search/--cut_tc] ... ok. exercise 97 [ search/--max] ... ok. exercise 98 [ search/--F1] ... ok. exercise 99 [ search/--F2] ... ok. exercise 100 [ search/--F3] ... ok. exercise 101 [ search/--nobias] ... ok. exercise 102 [ search/--nonull2] ... ok. exercise 103 [ search/-Z] ... ok. exercise 104 [ search/--domZ] ... ok. exercise 105 [ search/--seed] ... ok. exercise 106 [ search/--tformat] ... ok. exercise 107 [ hmmscan] ... ok. exercise 108 [ scan/-h] ... ok. exercise 109 [ scan/-o] ... ok. exercise 110 [ scan/--tblout] ... ok. exercise 111 [ scan/--domtblout] ... ok. exercise 112 [ scan/--pfamtblout] ... ok. exercise 113 [ scan/--acc] ... ok. exercise 114 [ scan/--noali] ... ok. exercise 115 [ scan/--notextw] ... ok. exercise 116 [ scan/--textw] ... ok. exercise 117 [ scan/-E] ... ok. exercise 118 [ scan/-T] ... ok. exercise 119 [ scan/--domE] ... ok. exercise 120 [ scan/--domT] ... ok. exercise 121 [ scan/--incE] ... ok. exercise 122 [ scan/--incT] ... ok. exercise 123 [ scan/--incdomE] ... ok. exercise 124 [ scan/--incdomT] ... ok. exercise 125 [ scan/--incdomT] ... ok. exercise 126 [ scan/--cut_ga] ... ok. exercise 127 [ scan/--cut_nc] ... ok. exercise 128 [ scan/--cut_tc] ... ok. exercise 129 [ scan/--max] ... ok. exercise 130 [ scan/--F1] ... ok. exercise 131 [ scan/--F2] ... ok. exercise 132 [ scan/--F3] ... ok. exercise 133 [ scan/--nobias] ... ok. exercise 134 [ scan/--nonull2] ... ok. exercise 135 [ scan/-Z] ... ok. exercise 136 [ scan/--domZ] ... ok. exercise 137 [ scan/--seed] ... ok. exercise 138 [ scan/--qformat] ... ok. exercise 139 [ scan/--cpu] ... ok. exercise 140 [ jackhmmer] ... ok. exercise 141 [ j/-h] ... ok. exercise 142 [ j/-N] ... ok. exercise 143 [ j/-o] ... ok. exercise 144 [ j/-A] ... ok. exercise 145 [ j/--tblout] ... ok. exercise 146 [ j/--domtblout] ... ok. exercise 147 [ j/--chkhmm] ... ok. exercise 148 [ j/--chkali] ... ok. exercise 149 [ j/--acc] ... ok. exercise 150 [ j/--noali] ... ok. exercise 151 [ j/--notextw] ... ok. exercise 152 [ j/--textw] ... ok. exercise 153 [ j/--popen] ... ok. exercise 154 [ j/--pextend] ... ok. exercise 155 [ j/--mxfile] ... ok. exercise 156 [ j/-E] ... ok. exercise 157 [ j/-T] ... ok. exercise 158 [ j/--domE] ... ok. exercise 159 [ j/--domT] ... ok. exercise 160 [ j/--incE] ... ok. exercise 161 [ j/--incT] ... ok. exercise 162 [ j/--incdomE] ... ok. exercise 163 [ j/--incdomT] ... ok. exercise 164 [ j/--max] ... ok. exercise 165 [ j/--F1] ... ok. exercise 166 [ j/--F2] ... ok. exercise 167 [ j/--F3] ... ok. exercise 168 [ j/--nobias] ... ok. exercise 169 [ j/--EmL] ... ok. exercise 170 [ j/--EmN] ... ok. exercise 171 [ j/--EvL] ... ok. exercise 172 [ j/--EvN] ... ok. exercise 173 [ j/--EfL] ... ok. exercise 174 [ j/--EfN] ... ok. exercise 175 [ j/--Eft] ... ok. exercise 176 [ j/--nonull2] ... ok. exercise 177 [ j/-Z] ... ok. exercise 178 [ j/--domZ] ... ok. exercise 179 [ j/--seed] ... ok. exercise 180 [ j/--qformat] ... ok. exercise 181 [ j/--tformat] ... ok. exercise 182 [ phmmer] ... ok. exercise 183 [ phmmer/-h] ... ok. exercise 184 [ phmmer/-o] ... ok. exercise 185 [ phmmer/-A] ... ok. exercise 186 [ phmmer/--tblout] ... ok. exercise 187 [ phmmer/--domtblout] ... ok. exercise 188 [ phmmer/--pfamtblout] ... ok. exercise 189 [ phmmer/--acc] ... ok. exercise 190 [ phmmer/--noali] ... ok. exercise 191 [ phmmer/--notextw] ... ok. exercise 192 [ phmmer/--textw] ... ok. exercise 193 [ phmmer/--popen] ... ok. exercise 194 [ phmmer/--pextend] ... ok. exercise 195 [ phmmer/--mxfile] ... ok. exercise 196 [ phmmer/-E] ... ok. exercise 197 [ phmmer/-T] ... ok. exercise 198 [ phmmer/--domE] ... ok. exercise 199 [ phmmer/--domT] ... ok. exercise 200 [ phmmer/--incE] ... ok. exercise 201 [ phmmer/--incT] ... ok. exercise 202 [ phmmer/--incdomE] ... ok. exercise 203 [ phmmer/--incdomT] ... ok. exercise 204 [ phmmer/--max] ... ok. exercise 205 [ phmmer/--F1] ... ok. exercise 206 [ phmmer/--F2] ... ok. exercise 207 [ phmmer/--F3] ... ok. exercise 208 [ phmmer/--nobias] ... ok. exercise 209 [ phmmer/--EmL] ... ok. exercise 210 [ phmmer/--EmN] ... ok. exercise 211 [ phmmer/--EvL] ... ok. exercise 212 [ phmmer/--EvN] ... ok. exercise 213 [ phmmer/--EfL] ... ok. exercise 214 [ phmmer/--EfN] ... ok. exercise 215 [ phmmer/--Eft] ... ok. exercise 216 [ phmmer/--nonull2] ... ok. exercise 217 [ phmmer/-Z] ... ok. exercise 218 [ phmmer/--domZ] ... ok. exercise 219 [ phmmer/--seed] ... ok. exercise 220 [ phmmer/--qformat] ... ok. exercise 221 [ phmmer/--tformat] ... ok. exercise 222 [ nhmmer] ... ok. exercise 223 [ nhmmer/-h] ... ok. exercise 224 [ nhmmer/-o] ... ok. exercise 225 [ nhmmer/-A] ... ok. exercise 226 [ nhmmer/--tblout] ... ok. exercise 227 [ nhmmer/--dfamtblout] ... ok. exercise 228 [ nhmmer/--acc] ... ok. exercise 229 [ nhmmer/--noali] ... ok. exercise 230 [ nhmmer/--notextw] ... ok. exercise 231 [ nhmmer/--textw] ... ok. exercise 232 [ nhmmer/-E] ... ok. exercise 233 [ nhmmer/-T] ... ok. exercise 234 [ nhmmer/--incE] ... ok. exercise 235 [ nhmmer/--incT] ... ok. exercise 236 [ nhmmer/--max] ... ok. exercise 237 [ nhmmer/--F1] ... ok. exercise 238 [ nhmmer/--F2] ... ok. exercise 239 [ nhmmer/--F3] ... ok. exercise 240 [ nhmmer/--nobias] ... ok. exercise 241 [ nhmmer/--nonull2] ... ok. exercise 242 [ nhmmer/-Z] ... ok. exercise 243 [ nhmmer/--seed] ... ok. exercise 244 [ nhmmscan] ... ok. exercise 245 [ nhmmscan/-h] ... ok. exercise 246 [ nhmmscan/-o] ... ok. exercise 247 [ nhmmscan/--tblout] ... ok. exercise 248 [nhmmscan/--dfamtblout] ... ok. exercise 249 [ nhmmscan/--acc] ... ok. exercise 250 [ nhmmscan/--noali] ... ok. exercise 251 [ nhmmscan/--notextw] ... ok. exercise 252 [ nhmmscan/--textw] ... ok. exercise 253 [ nhmmscan/-E] ... ok. exercise 254 [ nhmmscan/-T] ... ok. exercise 255 [ nhmmscan/--incE] ... ok. exercise 256 [ nhmmscan/--incT] ... ok. exercise 257 [ nhmmscan/--max] ... ok. exercise 258 [ nhmmscan/--F1] ... ok. exercise 259 [ nhmmscan/--F2] ... ok. exercise 260 [ nhmmscan/--F3] ... ok. exercise 261 [ nhmmscan/--nobias] ... ok. exercise 262 [ nhmmscan/--nonull2] ... ok. exercise 263 [ nhmmscan/-Z] ... ok. exercise 264 [ nhmmscan/--seed] ... ok. exercise 265 [ hmmemit] ... ok. exercise 266 [ hmmemit/-h] ... ok. exercise 267 [ hmmemit/-c] ... ok. exercise 268 [ hmmemit/-o] ... ok. exercise 269 [ hmmemit/-p] ... ok. exercise 270 [ hmmemit/-N] ... ok. exercise 271 [ hmmemit/-L] ... ok. exercise 272 [ hmmemit/--local] ... ok. exercise 273 [ hmmemit/--unilocal] ... ok. exercise 274 [ hmmemit/--glocal] ... ok. exercise 275 [ hmmemit/--uniglocal] ... ok. exercise 276 [ hmmfetch] ... ok. exercise 277 [ hmmstat] ... ok. exercise 278 [ hmmlogo] ... ok. exercise 279 [ hmmconvert] ... ok. exercise 280 [ hmmsim] ... ok. exercise 281 [ hmmbuild_variation] ... ok. exercise 282 [ hmmscan_variation] ... ok. exercise 283 [ hmmsearch_variation] ... ok. exercise 284 [ phmmer_variation] ... ok. exercise 285 [ mapali] ... ok. exercise 286 [ fragments] ... ok. exercise 287 [ nonresidues] ... ok. exercise 288 [ opt-annotation] ... ok. exercise 289 [ dup-names] ... ok. exercise 290 [ mapali-again] ... ok. exercise 291 [ delete-corruption] ... ok. exercise 292 [ msa-integrity] ... ok. exercise 293 [ hmmemit-consensus] ... ok. exercise 294 [ hmmconvert] ... ok. exercise 295 [ stdin_pipes] ... ok. exercise 296 [ nhmmer_generic] ... ok. exercise 297 [ hmmpgmd_ga] ... ok. exercise 298 [ rewind] ... ok. exercise 299 [ hmmpgmd_shard_ga] ... ok. exercise 300 [ bad-fasta] ... ok. exercise 301 [ brute-itest] ... ok. exercise 302 [ hmmpress-itest] ... ok. exercise 303 [ h39] ... ok. exercise 304 [ h45] ... ok. exercise 305 [ h50] ... ok. exercise 306 [ h82] ... ok. exercise 307 [ iss159] ... ok. All 307 exercises at level <= 2 passed. System information: Tue Jul 15 15:20:17 UTC 2025 Linux sbuild 6.12.35+deb13-cloud-arm64 #1 SMP Debian 6.12.35-1 (2025-07-03) aarch64 GNU/Linux make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/testsuite' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' if tail -n 6 debian/test_log | head -n 1 | grep -q FAILED ; then false ; fi make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_auto_install make -j4 install DESTDIR=/build/reproducible-path/hmmer-3.4\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' SUBDIR easel SUBDIR miniapps SUBDIR src SUBDIR impl_neon SUBDIR profmark if [ ! -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/bin ]; then /usr/bin/install -c -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/bin; fi if [ ! -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1 ]; then /usr/bin/install -c -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1; fi make -C src install make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src' for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan makehmmerdb; do \ /usr/bin/install -c -m 0755 $file /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/bin/ ;\ done make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C documentation install make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation' make -C man install make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation/man' for file in hmmer hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer makehmmerdb phmmer nhmmer nhmmscan alimask; do \ /usr/bin/install -c -m 0664 $file.man /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1/${file}.1 ;\ done make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation/man' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' mkdir -p /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer/usr/lib/aarch64-linux-gnu/hmmer/ cp src/hmmc2 /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer/usr/lib/aarch64-linux-gnu/hmmer/ make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_install -a dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_installexamples mkdir -p /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl find src/ -maxdepth 1 -name "*_utest" -exec cp \{\} /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/ \; find src/impl_sse -name "*_utest" -exec cp \{\} /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl \; cp src/itest_brute /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp src/hmmpress.itest.pl /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp -aR testsuite /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find easel -name "*.o" -delete cp -aR easel /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples cp -aR tutorial /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name 'Makefile' | xargs sed -i "s^/build/reproducible-path/hmmer-3.4+dfsg^.^g" find /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "esltmp*" -delete make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_compress -Xtutorial/ make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_fixperms find debian -name .dropbox.attr -delete find debian -name "*.fa" -executable -exec chmod -x \{\} \; find /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "*.man" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'hmmer' in '../hmmer_3.4+dfsg-2+b2_arm64.deb'. dpkg-deb: building package 'hmmer-dbgsym' in '../hmmer-dbgsym_3.4+dfsg-2+b2_arm64.deb'. dpkg-deb: building package 'hmmer-examples' in '../hmmer-examples_3.4+dfsg-2+b2_arm64.deb'. dpkg-genbuildinfo --build=any -O../hmmer_3.4+dfsg-2+b2_arm64.buildinfo dpkg-genchanges --build=any -O../hmmer_3.4+dfsg-2+b2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from hmmer-3.4+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-07-15T15:21:51Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Tue, 15 Jul 2025 15:21:52 +0000 | +------------------------------------------------------------------------------+ hmmer_3.4+dfsg-2+b2_arm64.changes: ---------------------------------- Format: 1.8 Date: Mon, 07 Apr 2025 17:25:40 +0000 Source: hmmer (3.4+dfsg-2) Binary: hmmer hmmer-dbgsym hmmer-examples Binary-Only: yes Architecture: arm64 Version: 3.4+dfsg-2+b2 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: arm Build Daemon (arm-ubc-02) Description: hmmer - profile hidden Markov models for protein sequence analysis hmmer-examples - profile hidden Markov models for protein sequence analysis (examp Changes: hmmer (3.4+dfsg-2+b2) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for arm64; no source changes. * Rebuild with sbuild 0.88.1 to address #1089088 Checksums-Sha1: ccebe1ee43a560e681a5927169b0310dab14f1f6 15543264 hmmer-dbgsym_3.4+dfsg-2+b2_arm64.deb 10a83ad7b4448092d60382c8ee337ab141efb21b 30863916 hmmer-examples_3.4+dfsg-2+b2_arm64.deb 3b77c18a9aca3b09812e935f5c9511bbb5971fc0 5911 hmmer_3.4+dfsg-2+b2_arm64.buildinfo 3c8cf3dad026a2f909d7dea9307c649feaffb7bd 980044 hmmer_3.4+dfsg-2+b2_arm64.deb Checksums-Sha256: 8ce11e6f6b435f4e85375c04d8f44a310edb74c62c720ed9973dc2317078593f 15543264 hmmer-dbgsym_3.4+dfsg-2+b2_arm64.deb 9d58e01ef5bdfe46d0c5468b5dbd42bcd3d5048bc83b79f5f65d5e7850e0279a 30863916 hmmer-examples_3.4+dfsg-2+b2_arm64.deb 6538c95c9742d4236b3f1add87232c05c1df145c69b20c5acd57e381c69fd0f3 5911 hmmer_3.4+dfsg-2+b2_arm64.buildinfo 211ff0c54122619e8e55c39573299d97bc43f8f371d9bbb21327afff9eb0c362 980044 hmmer_3.4+dfsg-2+b2_arm64.deb Files: 4e7f1f62c65f1cc60a5ff4d1908c5307 15543264 debug optional hmmer-dbgsym_3.4+dfsg-2+b2_arm64.deb 24ff9643b968504fc9f6b6025743c5f1 30863916 doc optional hmmer-examples_3.4+dfsg-2+b2_arm64.deb 67cb6a61e7e59040ee0caa836a8ffa2f 5911 science optional hmmer_3.4+dfsg-2+b2_arm64.buildinfo 2a902305d7e49537cdf930633d98faed 980044 science optional hmmer_3.4+dfsg-2+b2_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo Tue, 15 Jul 2025 15:21:54 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: hmmer (3.4+dfsg-2) Binary: hmmer hmmer-dbgsym hmmer-examples Architecture: arm64 Version: 3.4+dfsg-2+b2 Binary-Only-Changes: hmmer (3.4+dfsg-2+b2) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for arm64; no source changes. * Rebuild with sbuild 0.88.1 to address #1089088 . -- arm Build Daemon (arm-ubc-02) Mon, 07 Apr 2025 17:25:40 +0000 Checksums-Md5: 4e7f1f62c65f1cc60a5ff4d1908c5307 15543264 hmmer-dbgsym_3.4+dfsg-2+b2_arm64.deb 24ff9643b968504fc9f6b6025743c5f1 30863916 hmmer-examples_3.4+dfsg-2+b2_arm64.deb 2a902305d7e49537cdf930633d98faed 980044 hmmer_3.4+dfsg-2+b2_arm64.deb Checksums-Sha1: ccebe1ee43a560e681a5927169b0310dab14f1f6 15543264 hmmer-dbgsym_3.4+dfsg-2+b2_arm64.deb 10a83ad7b4448092d60382c8ee337ab141efb21b 30863916 hmmer-examples_3.4+dfsg-2+b2_arm64.deb 3c8cf3dad026a2f909d7dea9307c649feaffb7bd 980044 hmmer_3.4+dfsg-2+b2_arm64.deb Checksums-Sha256: 8ce11e6f6b435f4e85375c04d8f44a310edb74c62c720ed9973dc2317078593f 15543264 hmmer-dbgsym_3.4+dfsg-2+b2_arm64.deb 9d58e01ef5bdfe46d0c5468b5dbd42bcd3d5048bc83b79f5f65d5e7850e0279a 30863916 hmmer-examples_3.4+dfsg-2+b2_arm64.deb 211ff0c54122619e8e55c39573299d97bc43f8f371d9bbb21327afff9eb0c362 980044 hmmer_3.4+dfsg-2+b2_arm64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Tue, 15 Jul 2025 15:21:49 +0000 Build-Path: /build/reproducible-path/hmmer-3.4+dfsg Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.17-4), autopoint (= 0.23.1-1), autotools-dev (= 20240727.1), base-files (= 13.7), base-passwd (= 3.6.7), bash (= 5.2.37-1.1+b2), binutils (= 2.44-3), binutils-aarch64-linux-gnu (= 2.44-3), binutils-common (= 2.44-3), bsdextrautils (= 2.41-3), bsdutils (= 1:2.41-3), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.6-2), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-19), cpp-14-aarch64-linux-gnu (= 14.2.0-19), cpp-aarch64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.2), debianutils (= 5.21), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-3), dpkg (= 1.22.18), dpkg-dev (= 1.22.18), dwz (= 0.15-1+b1), file (= 1:5.46-4), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-aarch64-linux-gnu (= 14.2.0-19), g++-aarch64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-19), gcc-14-aarch64-linux-gnu (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-aarch64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-1), gettext-base (= 0.23.1-1), grep (= 3.11-4+b1), groff-base (= 1.23.0-7), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b2), libbinutils (= 2.44-3), libblkid1 (= 2.41-3), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-6), libc-dev-bin (= 2.41-6), libc6 (= 2.41-6), libc6-dev (= 2.41-6), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-4), libcc1-0 (= 14.2.0-19), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.278), libdebhelper-perl (= 13.24.2), libdivsufsort-dev (= 2.0.1-6+b1), libdivsufsort3 (= 2.0.1-6+b1), libdpkg-perl (= 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profile hidden Markov models for protein sequence analysis (examples) HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . 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./usr/share/doc/hmmer/examples/tutorial/globins45.fa hmmer_3.4+dfsg-2+b2_arm64.deb ----------------------------- new Debian package, version 2.0. size 980044 bytes: control archive=1864 bytes. 832 bytes, 20 lines control 2664 bytes, 44 lines md5sums Package: hmmer Source: hmmer (3.4+dfsg-2) Version: 3.4+dfsg-2+b2 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 7186 Depends: libc6 (>= 2.34), libdivsufsort3 (>= 2.0.1) Suggests: hmmer-doc (>= 3.4+dfsg-2) Section: science Priority: optional Homepage: http://hmmer.org/ Description: profile hidden Markov models for protein sequence analysis HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . 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hmmer Package-Time: 351 Source-Version: 3.4+dfsg-2 Space: 332764 Status: successful Version: 3.4+dfsg-2+b2 -------------------------------------------------------------------------------- Finished at 2025-07-15T15:21:51Z Build needed 00:05:51, 332764k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdfvZYXL/out size differs for hmmer-examples_3.4+dfsg-2+b2_arm64.deb checking hmmer-dbgsym_3.4+dfsg-2+b2_arm64.deb: size... sha256... sha1... md5... all OK checking hmmer-examples_3.4+dfsg-2+b2_arm64.deb: