===============================================================================

About this build: this rebuild has been done as part of reproduce.debian.net
where we aim to reproduce Debian binary packages distributed via ftp.debian.org,
by rebuilding using the exact same packages as the original build on the buildds,
as described in the relevant .buildinfo file from buildinfos.debian.net.

For more information please go to https://reproduce.debian.net or join
#debian-reproducible on irc.debian.org

===============================================================================

Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdwElp5b/inputs/python-pysam_0.23.0+ds-1+b1_arm64.buildinfo
Source: python-pysam
Version: 0.23.0+ds-1
rebuilderd-worker node: codethink02-arm64

+------------------------------------------------------------------------------+
| Downloading sources                          Tue, 15 Jul 2025 21:20:30 +0000 |
+------------------------------------------------------------------------------+

Get:1 https://deb.debian.org/debian trixie InRelease [168 kB]
Get:2 https://deb.debian.org/debian sid InRelease [213 kB]
Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB]
Get:4 https://deb.debian.org/debian sid/main Sources [11.0 MB]
Fetched 21.9 MB in 2s (9866 kB/s)
Reading package lists...
'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.0%2bds-1.dsc' python-pysam_0.23.0+ds-1.dsc 2441 SHA256:6f03755627321ef54c141a0a6ea4fb8d3b9816c75052fbbc133a185a4f847f09
'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.0%2bds.orig.tar.xz' python-pysam_0.23.0+ds.orig.tar.xz 1519052 SHA256:c54835d4df32a73252a8838ce97229e6e07a83f91a44991c129fde9d2edd31dd
'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.0%2bds-1.debian.tar.xz' python-pysam_0.23.0+ds-1.debian.tar.xz 10632 SHA256:9934b1ce981a0cd6f31ab40e7c3652af63d8058e2c1706cda66014fc6c7f2440
c54835d4df32a73252a8838ce97229e6e07a83f91a44991c129fde9d2edd31dd  python-pysam_0.23.0+ds.orig.tar.xz
9934b1ce981a0cd6f31ab40e7c3652af63d8058e2c1706cda66014fc6c7f2440  python-pysam_0.23.0+ds-1.debian.tar.xz
6f03755627321ef54c141a0a6ea4fb8d3b9816c75052fbbc133a185a4f847f09  python-pysam_0.23.0+ds-1.dsc

+------------------------------------------------------------------------------+
| Calling debrebuild                           Tue, 15 Jul 2025 21:20:33 +0000 |
+------------------------------------------------------------------------------+

Rebuilding python-pysam=0.23.0+ds-1 in /srv/rebuilderd/tmp/rebuilderdwElp5b/inputs now.
+ nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdwElp5b/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdwElp5b/inputs/python-pysam_0.23.0+ds-1+b1_arm64.buildinfo
/srv/rebuilderd/tmp/rebuilderdwElp5b/inputs/python-pysam_0.23.0+ds-1+b1_arm64.buildinfo contains a GPG signature which has NOT been validated
Using defined Build-Path: /build/reproducible-path/python-pysam-0.23.0+ds
I: verifying dsc... successful!
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid InRelease [205 kB]
Get:2 http://snapshot.debian.org/archive/debian/20250304T145039Z sid InRelease [205 kB]
Get:3 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 Packages [10.0 MB]
Get:4 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 Packages [10.0 MB]
Fetched 20.5 MB in 2s (10.7 MB/s)
Reading package lists...
W: http://snapshot.debian.org/archive/debian/20250224T085051Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted
W: http://snapshot.debian.org/archive/debian/20250304T145039Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libpam0g arm64 1.7.0-3 [68.6 kB]
Fetched 68.6 kB in 0s (3696 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpog753a1e/libpam0g_1.7.0-3_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Fetched 104 kB in 0s (5968 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaylwadp9/libarchive-zip-perl_1.68-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 python3-all-dev arm64 3.13.2-1 [1068 B]
Fetched 1068 B in 0s (64.9 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp21dlpe6q/python3-all-dev_3.13.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 dpkg arm64 1.22.15 [1522 kB]
Fetched 1522 kB in 0s (51.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsiv8fncx/dpkg_1.22.15_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Fetched 7984 B in 0s (461 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1itm8uct/python3-jaraco.context_6.0.0-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Fetched 24.8 kB in 0s (1488 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp0pmi93o/sensible-utils_0.0.24_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17 [9169 kB]
Fetched 9169 kB in 0s (118 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6gu9c4md/cpp-14-aarch64-linux-gnu_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libatomic1 arm64 14.2.0-17 [10.1 kB]
Fetched 10.1 kB in 0s (597 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo4w8k352/libatomic1_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 perl-modules-5.40 all 5.40.1-2 [3017 kB]
Fetched 3017 kB in 0s (71.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv6te5yk5/perl-modules-5.40_5.40.1-2_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 bsdutils arm64 1:2.40.4-5 [105 kB]
Fetched 105 kB in 0s (6041 kB/s)
dpkg-name: info: moved 'bsdutils_1%3a2.40.4-5_arm64.deb' to '/srv/rebuilderd/tmp/tmpbz2e6b8m/bsdutils_2.40.4-5_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libsqlite3-0 arm64 3.46.1-1 [852 kB]
Fetched 852 kB in 0s (33.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnr8uu374/libsqlite3-0_3.46.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 libmount1 arm64 2.40.4-5 [191 kB]
Fetched 191 kB in 0s (3417 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkzs35ewm/libmount1_2.40.4-5_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libreadline8t64 arm64 8.2-6 [159 kB]
Fetched 159 kB in 0s (8583 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp33qfa2tm/libreadline8t64_8.2-6_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 build-essential arm64 12.12 [4624 B]
Fetched 4624 B in 0s (282 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppaznjyxj/build-essential_12.12_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 dash arm64 0.5.12-12 [95.6 kB]
Fetched 95.6 kB in 0s (5603 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpey9jowpd/dash_0.5.12-12_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB]
Fetched 388 kB in 0s (19.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnc8b0xrw/libssh2-1-dev_1.11.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB]
Fetched 127 kB in 0s (7141 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphi6ouuyd/libidn2-0_2.3.7-2+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libaudit1 arm64 1:4.0.2-2+b1 [54.6 kB]
Fetched 54.6 kB in 0s (3094 kB/s)
dpkg-name: info: moved 'libaudit1_1%3a4.0.2-2+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpmrxkwr7w/libaudit1_4.0.2-2+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Fetched 449 kB in 0s (21.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp87vp0jyr/libunistring5_1.3-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB]
Fetched 109 kB in 0s (6124 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf3ly6a2h/libngtcp2-16_1.9.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 cython3 arm64 3.0.11+dfsg-2 [2726 kB]
Fetched 2726 kB in 0s (70.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4yflggs2/cython3_3.0.11+dfsg-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB]
Fetched 312 kB in 0s (16.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6v0mik_p/liblzma-dev_5.6.3-1+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 libsmartcols1 arm64 2.40.4-5 [136 kB]
Fetched 136 kB in 0s (7516 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0_vlg1jm/libsmartcols1_2.40.4-5_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libncurses6 arm64 6.5+20250216-1 [96.1 kB]
Fetched 96.1 kB in 0s (5598 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk0ug9m_k/libncurses6_6.5+20250216-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB]
Fetched 122 kB in 0s (5185 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps0uo93u6/libidn2-dev_2.3.7-2+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB]
Fetched 208 kB in 0s (5170 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppeccd9b2/libp11-kit-dev_0.25.5-3_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [329 kB]
Fetched 329 kB in 0s (14.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp58jy_rvw/libzstd-dev_1.5.6+dfsg-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 sed arm64 4.9-2+b1 [326 kB]
Fetched 326 kB in 0s (17.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfinnkzbl/sed_4.9-2+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB]
Fetched 47.3 kB in 0s (2774 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9t15sg3w/libtasn1-6_4.20.0-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libc6 arm64 2.40-7 [2455 kB]
Fetched 2455 kB in 0s (67.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp01bnhxg2/libc6_2.40-7_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libperl5.40 arm64 5.40.1-2 [4143 kB]
Fetched 4143 kB in 0s (79.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj332lbvk/libperl5.40_5.40.1-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3-pkg-resources all 75.8.0-1 [222 kB]
Fetched 222 kB in 0s (11.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_i8gycey/python3-pkg-resources_75.8.0-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB]
Fetched 71.3 kB in 0s (4056 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmef4mu6l/libnghttp2-14_1.64.0-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libctf-nobfd0 arm64 2.44-2 [152 kB]
Fetched 152 kB in 0s (9526 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgia1ruh7/libctf-nobfd0_2.44-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 krb5-multidev arm64 1.21.3-4 [126 kB]
Fetched 126 kB in 0s (7120 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx1_f86pd/krb5-multidev_1.21.3-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB]
Fetched 26.9 kB in 0s (1623 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1lcipica/python3-pluggy_1.5.0-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Fetched 17.1 kB in 0s (1044 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd_e3786_/dh-autoreconf_20_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Fetched 241 kB in 0s (12.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp03nikw4n/gettext-base_0.23.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 media-types all 12.0.0 [28.9 kB]
Fetched 28.9 kB in 0s (1680 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4e5a_6o2/media-types_12.0.0_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.9.1-1 [23.0 kB]
Fetched 23.0 kB in 0s (429 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoyce9x1t/libngtcp2-crypto-gnutls-dev_1.9.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libpam-modules-bin arm64 1.7.0-3 [48.0 kB]
Fetched 48.0 kB in 0s (3015 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvlyg0uwd/libpam-modules-bin_1.7.0-3_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 libpython3-all-dev arm64 3.13.2-1 [1068 B]
Fetched 1068 B in 0s (94.4 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp65cuxw56/libpython3-all-dev_3.13.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Fetched 297 kB in 0s (15.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ir52xar/libbrotli1_1.1.0-2+b6_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libcrypt-dev arm64 1:4.4.38-1 [123 kB]
Fetched 123 kB in 0s (7102 kB/s)
dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_arm64.deb' to '/srv/rebuilderd/tmp/tmph6_cmgf7/libcrypt-dev_4.4.38-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Fetched 1404 kB in 0s (49.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr0huhajl/man-db_2.13.0-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 perl arm64 5.40.1-2 [267 kB]
Fetched 267 kB in 0s (13.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9pctyklg/perl_5.40.1-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libstdc++6 arm64 14.2.0-17 [637 kB]
Fetched 637 kB in 0s (48.0 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5z1351w7/libstdc++6_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 linux-libc-dev all 6.12.16-1 [2522 kB]
Fetched 2522 kB in 0s (110 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu1cw_oe6/linux-libc-dev_6.12.16-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB]
Fetched 308 kB in 0s (15.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6svluw9e/libkrb5-3_1.21.3-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 libblkid1 arm64 2.40.4-5 [164 kB]
Fetched 164 kB in 0s (8924 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2jmxo6j1/libblkid1_2.40.4-5_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 python3-dev arm64 3.13.2-1 [26.1 kB]
Fetched 26.1 kB in 0s (1554 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkqoqx16o/python3-dev_3.13.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Fetched 116 kB in 0s (6474 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprggpnsoy/libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 debianutils arm64 5.21 [92.1 kB]
Fetched 92.1 kB in 0s (5504 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqa91pgwz/debianutils_5.21_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB]
Fetched 55.7 kB in 0s (3325 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxgor_slv/libsasl2-2_2.1.28+dfsg1-8+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 base-files arm64 13.6 [72.9 kB]
Fetched 72.9 kB in 0s (4054 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5f3t4s8m/base-files_13.6_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libtinfo6 arm64 6.5+20250216-1 [341 kB]
Fetched 341 kB in 0s (16.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuk76uals/libtinfo6_6.5+20250216-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 ncurses-bin arm64 6.5+20250216-1 [432 kB]
Fetched 432 kB in 0s (21.6 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ei5unsn/ncurses-bin_6.5+20250216-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 base-passwd arm64 3.6.6 [52.9 kB]
Fetched 52.9 kB in 0s (3074 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvgea7o2j/base-passwd_3.6.6_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libkadm5srv-mit12 arm64 1.21.3-4 [53.1 kB]
Fetched 53.1 kB in 0s (3199 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi2bubln4/libkadm5srv-mit12_1.21.3-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 sysvinit-utils arm64 3.14-1 [33.2 kB]
Fetched 33.2 kB in 0s (2025 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpejifyyee/sysvinit-utils_3.14-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libcc1-0 arm64 14.2.0-17 [42.2 kB]
Fetched 42.2 kB in 0s (2246 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_12z9_ae/libcc1-0_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Fetched 917 kB in 0s (38.7 MB/s)
dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpv2ocof1a/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17 [10.1 MB]
Fetched 10.1 MB in 0s (220 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe63u0jhc/g++-14-aarch64-linux-gnu_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB]
Fetched 426 kB in 0s (21.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkvyiiq_h/libhts3t64_1.21+ds-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libitm1 arm64 14.2.0-17 [24.2 kB]
Fetched 24.2 kB in 0s (1475 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo3v9ipn3/libitm1_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libdpkg-perl all 1.22.15 [648 kB]
Fetched 648 kB in 0s (58.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphutqcn9m/libdpkg-perl_1.22.15_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libcrypt1 arm64 1:4.4.38-1 [91.8 kB]
Fetched 91.8 kB in 0s (1436 kB/s)
dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_arm64.deb' to '/srv/rebuilderd/tmp/tmphlcfr0yg/libcrypt1_4.4.38-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libzstd1 arm64 1.5.6+dfsg-2 [261 kB]
Fetched 261 kB in 0s (6433 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpodjiz6x_/libzstd1_1.5.6+dfsg-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB]
Fetched 1374 kB in 0s (16.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt73tpgrx/libgnutls30t64_3.8.9-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB]
Fetched 23.9 kB in 0s (696 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8g2usn_n/libcom-err2_1.47.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libpam-modules arm64 1.7.0-3 [170 kB]
Fetched 170 kB in 0s (4735 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph535lw89/libpam-modules_1.7.0-3_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 python3 arm64 3.13.2-1 [28.1 kB]
Fetched 28.1 kB in 0s (920 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp57_un7ox/python3_3.13.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Fetched 4832 B in 0s (65.2 kB/s)
dpkg-name: info: moved 'cpp-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp6766ei3i/cpp-aarch64-linux-gnu_14.2.0-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libpam-runtime all 1.7.0-3 [248 kB]
Fetched 248 kB in 0s (13.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8bhej5h0/libpam-runtime_1.7.0-3_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 nettle-dev arm64 3.10.1-1 [1325 kB]
Fetched 1325 kB in 0s (50.0 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2_74ps7p/nettle-dev_3.10.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3-iniconfig all 1.1.1-2 [6396 B]
Fetched 6396 B in 0s (360 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt8_8d10_/python3-iniconfig_1.1.1-2_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libudev1 arm64 257.3-1 [141 kB]
Fetched 141 kB in 0s (7836 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppxjezn59/libudev1_257.3-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libkdb5-10t64 arm64 1.21.3-4 [41.0 kB]
Fetched 41.0 kB in 0s (0 B/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6hmb6b41/libkdb5-10t64_1.21.3-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB]
Fetched 179 kB in 0s (0 B/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6xybsqtk/libldap2_2.6.9+dfsg-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB]
Fetched 29.6 kB in 0s (1791 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplhqm9cjw/pkgconf-bin_1.8.1-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB]
Fetched 21.2 kB in 0s (312 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz0v0o05m/libffi8_3.4.7-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB]
Fetched 42.5 kB in 0s (2612 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprkzz5utj/libdeflate0_1.23-1+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB]
Fetched 92.0 kB in 0s (5420 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpseq2xphd/bsdextrautils_2.40.4-5_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB]
Fetched 74.7 kB in 0s (6151 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplf29v63h/libhtscodecs2_1.6.1-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 libuuid1 arm64 2.40.4-5 [36.4 kB]
Fetched 36.4 kB in 0s (2208 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa8_2z69m/libuuid1_2.40.4-5_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libnghttp3-dev arm64 1.6.0-2 [86.5 kB]
Fetched 86.5 kB in 0s (5125 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3erz8u39/libnghttp3-dev_1.6.0-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libasan8 arm64 14.2.0-17 [2580 kB]
Fetched 2580 kB in 0s (67.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcb7xu6f_/libasan8_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Fetched 9239 kB in 0s (115 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx9e6qmla/libicu72_72.1-6_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB]
Fetched 67.5 kB in 0s (3996 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6r69rkzc/librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libssl-dev arm64 3.4.1-1 [3232 kB]
Fetched 3232 kB in 0s (35.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5t7g0rug/libssl-dev_3.4.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Fetched 1610 kB in 0s (54.0 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb4_n6h_m/gettext_0.23.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 bcftools arm64 1.21-1 [706 kB]
Fetched 706 kB in 0s (31.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb0qsunl9/bcftools_1.21-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 gcc-14-base arm64 14.2.0-17 [49.1 kB]
Fetched 49.1 kB in 0s (3005 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgia4l6ot/gcc-14-base_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libattr1 arm64 1:2.5.2-3 [22.7 kB]
Fetched 22.7 kB in 0s (1215 kB/s)
dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpnwz6ejqs/libattr1_2.5.2-3_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libmd0 arm64 1.1.0-2+b1 [33.7 kB]
Fetched 33.7 kB in 0s (1962 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu1_jrwvs/libmd0_1.1.0-2+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libunbound8 arm64 1.22.0-1+b1 [553 kB]
Fetched 553 kB in 0s (25.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr1o1dks_/libunbound8_1.22.0-1+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libmpfr6 arm64 4.2.1-1+b2 [680 kB]
Fetched 680 kB in 0s (30.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp27f1gq7u/libmpfr6_4.2.1-1+b2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Fetched 9352 B in 0s (0 B/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc45cdq6v/libkeyutils1_1.6.3-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Fetched 248 kB in 0s (12.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdn9j58t4/po-debconf_1.0.21+nmu1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Fetched 90.9 kB in 0s (5297 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcqv4w1v_/libdebhelper-perl_13.24.1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libdeflate-dev arm64 1.23-1+b1 [51.4 kB]
Fetched 51.4 kB in 0s (3132 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwcqwnfhj/libdeflate-dev_1.23-1+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3-zipp all 3.21.0-1 [10.6 kB]
Fetched 10.6 kB in 0s (643 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy3g30frv/python3-zipp_3.21.0-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 libpython3-stdlib arm64 3.13.2-1 [10.0 kB]
Fetched 10.0 kB in 0s (567 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc6th4tgn/libpython3-stdlib_3.13.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 autoconf all 2.72-3 [493 kB]
Fetched 493 kB in 0s (22.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp07jdrqxq/autoconf_2.72-3_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB]
Fetched 96.7 kB in 0s (4554 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb4tcefa1/libtasn1-6-dev_4.20.0-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Fetched 326 kB in 0s (16.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzk9xphpo/libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libhwasan0 arm64 14.2.0-17 [1443 kB]
Fetched 1443 kB in 0s (49.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu8qnsipf/libhwasan0_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 binutils-aarch64-linux-gnu arm64 2.44-2 [820 kB]
Fetched 820 kB in 0s (65.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeh7d7ddc/binutils-aarch64-linux-gnu_2.44-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libgmp10 arm64 2:6.3.0+dfsg-3 [535 kB]
Fetched 535 kB in 0s (24.6 MB/s)
dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_arm64.deb' to '/srv/rebuilderd/tmp/tmposn5x726/libgmp10_6.3.0+dfsg-3_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 readline-common all 8.2-6 [69.4 kB]
Fetched 69.4 kB in 0s (4144 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc48s_yoz/readline-common_8.2-6_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 autopoint all 0.23.1-1 [770 kB]
Fetched 770 kB in 0s (34.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpndd8secj/autopoint_0.23.1-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libgprofng0 arm64 2.44-2 [668 kB]
Fetched 668 kB in 0s (53.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqs1s4ph2/libgprofng0_2.44-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libkrb5-dev arm64 1.21.3-4 [15.9 kB]
Fetched 15.9 kB in 0s (975 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp000uulmx/libkrb5-dev_1.21.3-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libc6-dev arm64 2.40-7 [1597 kB]
Fetched 1597 kB in 0s (54.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa7p1kdlf/libc6-dev_2.40-7_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Fetched 1332 B in 0s (77.9 kB/s)
dpkg-name: info: moved 'g++_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpj3r_1905/g++_14.2.0-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libacl1 arm64 2.3.2-2+b1 [32.2 kB]
Fetched 32.2 kB in 0s (1945 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm6xhzyt8/libacl1_2.3.2-2+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libbinutils arm64 2.44-2 [661 kB]
Fetched 661 kB in 0s (30.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9dm27xn3/libbinutils_2.44-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libssl3t64 arm64 3.4.1-1 [2636 kB]
Fetched 2636 kB in 0s (69.6 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoi3z20zq/libssl3t64_3.4.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libgnutls-dane0t64 arm64 3.8.9-2 [452 kB]
Fetched 452 kB in 0s (22.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp78khxn7x/libgnutls-dane0t64_3.8.9-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libdebconfclient0 arm64 0.277 [10.5 kB]
Fetched 10.5 kB in 0s (647 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr09_jkeg/libdebconfclient0_0.277_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Fetched 189 kB in 0s (10.0 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw698005v/libelf1t64_0.192-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libgomp1 arm64 14.2.0-17 [124 kB]
Fetched 124 kB in 0s (7030 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr7brtdd1/libgomp1_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB]
Fetched 127 kB in 0s (7022 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyhxknrsd/libgssapi-krb5-2_1.21.3-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libtool all 2.5.4-3 [539 kB]
Fetched 539 kB in 0s (26.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrgm_rzj/libtool_2.5.4-3_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 samtools arm64 1.21-1 [637 kB]
Fetched 637 kB in 0s (29.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0qk0jxvh/samtools_1.21-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 debhelper all 13.24.1 [920 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzhtg99f9/debhelper_13.24.1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libstdc++-14-dev arm64 14.2.0-17 [2292 kB]
Fetched 2292 kB in 0s (65.6 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpor34xe35/libstdc++-14-dev_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 tzdata all 2025a-2 [259 kB]
Fetched 259 kB in 0s (13.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbfeuv00f/tzdata_2025a-2_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-1+b1 [85.1 kB]
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dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmp1kpb26eh/zlib1g_1.3.dfsg+really1.3.1-1+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpntkuuzxc/libnghttp3-9_1.6.0-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 bash arm64 5.2.37-1.1 [1455 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5jbjqts7/bash_5.2.37-1.1_arm64.deb'
Downloading dependency 1 of 255: libpam0g:arm64=1.7.0-3
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Downloading dependency 4 of 255: dpkg:arm64=1.22.15
Downloading dependency 5 of 255: python3-jaraco.context:arm64=6.0.0-1
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Downloading dependency 104 of 255: autoconf:arm64=2.72-3
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Downloading dependency 106 of 255: libjs-jquery:arm64=3.6.1+dfsg+~3.5.14-1
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Downloading dependency 109 of 255: libgmp10:arm64=2:6.3.0+dfsg-3
Downloading dependency 110 of 255: readline-common:arm64=8.2-6
Downloading dependency 111 of 255: autopoint:arm64=0.23.1-1
Downloading dependency 112 of 255: libgprofng0:arm64=2.44-2
Downloading dependency 113 of 255: libkrb5-dev:arm64=1.21.3-4
Downloading dependency 114 of 255: libc6-dev:arm64=2.40-7
Downloading dependency 115 of 255: g++:arm64=4:14.2.0-1
Downloading dependency 116 of 255: libacl1:arm64=2.3.2-2+b1
Downloading dependency 117 of 255: libbinutils:arm64=2.44-2
Downloading dependency 118 of 255: libssl3t64:arm64=3.4.1-1
Downloading dependency 119 of 255: libgnutls-dane0t64:arm64=3.8.9-2
Downloading dependency 120 of 255: libdebconfclient0:arm64=0.277
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Downloading dependency 122 of 255: libgomp1:arm64=14.2.0-17
Downloading dependency 123 of 255: libgssapi-krb5-2:arm64=1.21.3-4
Downloading dependency 124 of 255: libtool:arm64=2.5.4-3
Downloading dependency 125 of 255: samtools:arm64=1.21-1
Downloading dependency 126 of 255: debhelper:arm64=13.24.1
Downloading dependency 127 of 255: libstdc++-14-dev:arm64=14.2.0-17
Downloading dependency 128 of 255: tzdata:arm64=2025a-2
Downloading dependency 129 of 255: zlib1g:arm64=1:1.3.dfsg+really1.3.1-1+b1
Downloading dependency 130 of 255: libnghttp3-9:arm64=1.6.0-2
Downloading dependency 131 of 255: bash:arm64=5.2.37-1.1
Downloading dependency 132 of 255: libpsl5t64:arm64=0.21.2-1.1+b1Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Fetched 57.1 kB in 0s (3372 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqdyx8dm1/libpsl5t64_0.21.2-1.1+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libc-dev-bin arm64 2.40-7 [56.2 kB]
Fetched 56.2 kB in 0s (3399 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6w9ow9pj/libc-dev-bin_2.40-7_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 coreutils arm64 9.5-1+b1 [2858 kB]
Fetched 2858 kB in 0s (70.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfaxxhqwm/coreutils_9.5-1+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB]
Fetched 853 kB in 0s (57.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu69vgzih/libpython3.13-minimal_3.13.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libubsan1 arm64 14.2.0-17 [1039 kB]
Fetched 1039 kB in 0s (41.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpasx8bqdo/libubsan1_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 init-system-helpers all 1.68 [38.7 kB]
Fetched 38.7 kB in 0s (2340 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaf37tz32/init-system-helpers_1.68_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 liblzma5 arm64 5.6.3-1+b1 [266 kB]
Fetched 266 kB in 0s (21.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu4su4bzv/liblzma5_5.6.3-1+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 ncurses-base all 6.5+20250216-1 [273 kB]
Fetched 273 kB in 0s (21.6 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3e0mbmhw/ncurses-base_6.5+20250216-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB]
Fetched 26.1 kB in 0s (1582 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzpn32qie/pkgconf_1.8.1-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB]
Fetched 621 kB in 0s (39.9 MB/s)
dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpj70yr6yq/libgmp-dev_6.3.0+dfsg-3_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libgdbm-compat4t64 arm64 1.24-2 [50.3 kB]
Fetched 50.3 kB in 0s (3002 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuqidlg1s/libgdbm-compat4t64_1.24-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 automake all 1:1.17-3 [862 kB]
Fetched 862 kB in 0s (36.7 MB/s)
dpkg-name: info: moved 'automake_1%3a1.17-3_all.deb' to '/srv/rebuilderd/tmp/tmpi79vpziy/automake_1.17-3_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libbz2-1.0 arm64 1.0.8-6 [37.8 kB]
Fetched 37.8 kB in 0s (2289 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsiu3cvgu/libbz2-1.0_1.0.8-6_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libnettle8t64 arm64 3.10.1-1 [311 kB]
Fetched 311 kB in 0s (16.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0jekand7/libnettle8t64_3.10.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB]
Fetched 17.3 kB in 0s (1059 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbqqlopqq/libngtcp2-crypto-gnutls8_1.9.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libncursesw6 arm64 6.5+20250216-1 [124 kB]
Fetched 124 kB in 0s (6859 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiydgfb3_/libncursesw6_6.5+20250216-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 tabix arm64 1.21+ds-1 [461 kB]
Fetched 461 kB in 0s (21.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb9h3hq8x/tabix_1.21+ds-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Fetched 1129 kB in 0s (43.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdoe5s79b/groff-base_1.23.0-7_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Fetched 69.2 kB in 0s (4029 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpndm6tnyy/libuchardet0_0.0.8-1+b2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Fetched 1440 B in 0s (87.2 kB/s)
dpkg-name: info: moved 'gcc-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp727ajcpb/gcc-aarch64-linux-gnu_14.2.0-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 patch arm64 2.7.6-7+b1 [118 kB]
Fetched 118 kB in 0s (6643 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptiz2hf3t/patch_2.7.6-7+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 gcc-14 arm64 14.2.0-17 [527 kB]
Fetched 527 kB in 0s (24.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt9npb7d1/gcc-14_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 tar arm64 1.35+dfsg-3.1 [802 kB]
Fetched 802 kB in 0s (12.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcq8fh5vn/tar_1.35+dfsg-3.1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libhogweed6t64 arm64 3.10.1-1 [332 kB]
Fetched 332 kB in 0s (16.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw1954h3d/libhogweed6t64_3.10.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Fetched 102 kB in 0s (5933 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp002aizpf/dwz_0.15-1+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libctf0 arm64 2.44-2 [84.0 kB]
Fetched 84.0 kB in 0s (6170 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp957imww5/libctf0_2.44-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 m4 arm64 1.4.19-5 [284 kB]
Fetched 284 kB in 0s (15.0 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_x7y3dkg/m4_1.4.19-5_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Fetched 1200 B in 0s (73.0 kB/s)
dpkg-name: info: moved 'g++-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpesmj6827/g++-aarch64-linux-gnu_14.2.0-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Fetched 102 kB in 0s (5715 kB/s)
dpkg-name: info: moved 'libmagic1t64_1%3a5.45-3+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpzk2aj3iv/libmagic1t64_5.45-3+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libtsan2 arm64 14.2.0-17 [2385 kB]
Fetched 2385 kB in 0s (66.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdf5y89ze/libtsan2_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 binutils-common arm64 2.44-2 [2508 kB]
Fetched 2508 kB in 0s (67.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpns5k9kr6/binutils-common_2.44-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 grep arm64 3.11-4+b1 [426 kB]
Fetched 426 kB in 0s (21.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmznujqkz/grep_3.11-4+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Fetched 13.6 kB in 0s (120 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzgnf9s6l/python3-autocommand_2.2.2-3_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 rpcsvc-proto arm64 1.4.3-1+b1 [60.5 kB]
Fetched 60.5 kB in 0s (3587 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0uamrmlk/rpcsvc-proto_1.4.3-1+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libcap-ng0 arm64 0.8.5-4 [16.7 kB]
Fetched 16.7 kB in 0s (987 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2fj7ucsv/libcap-ng0_0.8.5-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Fetched 409 kB in 0s (21.0 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsgpkiazg/libp11-kit0_0.25.5-3_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB]
Fetched 20.3 kB in 0s (1248 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_0icwom3/libsasl2-modules-db_2.1.28+dfsg1-8+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 hostname arm64 3.25 [10.8 kB]
Fetched 10.8 kB in 0s (677 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe0kve3k1/hostname_3.25_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Fetched 12.0 kB in 0s (739 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe8l2t218/python3-jaraco.functools_4.1.0-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 python3-minimal arm64 3.13.2-1 [27.1 kB]
Fetched 27.1 kB in 0s (1659 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphuossxfr/python3-minimal_3.13.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 findutils arm64 4.10.0-3 [696 kB]
Fetched 696 kB in 0s (31.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps6jwge_h/findutils_4.10.0-3_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libpython3.13 arm64 3.13.2-1 [1970 kB]
Fetched 1970 kB in 0s (57.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2pqrtx_v/libpython3.13_3.13.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 bzip2 arm64 1.0.8-6 [39.5 kB]
Fetched 39.5 kB in 0s (2383 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpve48_d4v/bzip2_1.0.8-6_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Fetched 22.9 kB in 0s (1366 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfrj71rzh/intltool-debian_0.35.0+20060710.6_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17 [17.7 MB]
Fetched 17.7 MB in 0s (143 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgidmd6wo/gcc-14-aarch64-linux-gnu_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3-pytest all 8.3.4-1 [250 kB]
Fetched 250 kB in 0s (13.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyt1f750z/python3-pytest_8.3.4-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Fetched 11.4 kB in 0s (576 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplnawee43/python3-jaraco.text_4.0.0-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Fetched 601 kB in 0s (28.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2lbn9bua/libisl23_0.27-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Fetched 314 kB in 0s (16.4 MB/s)
dpkg-name: info: moved 'libmagic-mgc_1%3a5.45-3+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpe1rcfd0l/libmagic-mgc_5.45-3+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Fetched 51.6 kB in 0s (3060 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc1_ccnzw/autotools-dev_20220109.1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Fetched 630 kB in 0s (28.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy2g2n1ji/libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 dh-python all 6.20250108 [113 kB]
Fetched 113 kB in 0s (6598 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbinyb9nq/dh-python_6.20250108_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 libcurl4-gnutls-dev arm64 8.12.1-3 [465 kB]
Fetched 465 kB in 0s (22.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpldhrc4um/libcurl4-gnutls-dev_8.12.1-3_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 mawk arm64 1.3.4.20250131-1 [134 kB]
Fetched 134 kB in 0s (7650 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfsftvlyi/mawk_1.3.4.20250131-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libgdbm6t64 arm64 1.24-2 [74.0 kB]
Fetched 74.0 kB in 0s (4365 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptyd0r6bm/libgdbm6t64_1.24-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 g++-14 arm64 14.2.0-17 [22.1 kB]
Fetched 22.1 kB in 0s (1353 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdkb4zux/g++-14_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libngtcp2-dev arm64 1.9.1-1 [162 kB]
Fetched 162 kB in 0s (9128 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxi42opj9/libngtcp2-dev_1.9.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3-setuptools all 75.8.0-1 [724 kB]
Fetched 724 kB in 0s (32.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5pi4d6kd/python3-setuptools_75.8.0-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB]
Fetched 37.3 kB in 0s (2188 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp16ghg9jw/python3-typeguard_4.4.2-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-9 [629 kB]
Fetched 629 kB in 0s (28.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkcp2xt7c/libdb5.3t64_5.3.28+dfsg2-9_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Fetched 73.0 kB in 0s (4387 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiml6exlc/python3-typing-extensions_4.12.2-2_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB]
Fetched 308 kB in 0s (16.0 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsecs115l/libbrotli-dev_1.1.0-2+b6_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 gzip arm64 1.13-1 [135 kB]
Fetched 135 kB in 0s (7931 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3lb1mq8x/gzip_1.13-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 perl-base arm64 5.40.1-2 [1525 kB]
Fetched 1525 kB in 0s (52.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg82ppfc_/perl-base_5.40.1-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 debconf all 1.5.89 [120 kB]
Fetched 120 kB in 0s (6799 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpumv961fx/debconf_1.5.89_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libselinux1 arm64 3.8-3 [79.0 kB]
Fetched 79.0 kB in 0s (4667 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuo7oabzl/libselinux1_3.8-3_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 libpython3-dev arm64 3.13.2-1 [10.3 kB]
Fetched 10.3 kB in 0s (610 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0p42dees/libpython3-dev_3.13.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB]
Fetched 329 kB in 0s (17.1 MB/s)
dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpp26nhj97/libgmpxx4ldbl_6.3.0+dfsg-3_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libsystemd0 arm64 257.3-1 [419 kB]
Fetched 419 kB in 0s (21.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6qizt0i3/libsystemd0_257.3-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 cpp-14 arm64 14.2.0-17 [1280 B]
Fetched 1280 B in 0s (76.2 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwp3x9a4o/cpp-14_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB]
Fetched 81.5 kB in 0s (4575 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps__5sc73/libk5crypto3_1.21.3-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 liblsan0 arm64 14.2.0-17 [1162 kB]
Fetched 1162 kB in 0s (44.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpecqk6dt6/liblsan0_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libsframe1 arm64 2.44-2 [77.7 kB]
Fetched 77.7 kB in 0s (4548 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4kmki3sg/libsframe1_2.44-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Fetched 5136 B in 0s (306 kB/s)
dpkg-name: info: moved 'gcc_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp2riczb0m/gcc_14.2.0-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libgssrpc4t64 arm64 1.21.3-4 [56.9 kB]
Fetched 56.9 kB in 0s (3455 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpewdm_dau/libgssrpc4t64_1.21.3-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB]
Fetched 1997 kB in 0s (60.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl912smzt/python3.13-minimal_3.13.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libldap-dev arm64 2.6.9+dfsg-1 [305 kB]
Fetched 305 kB in 0s (15.4 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4i_vq4wj/libldap-dev_2.6.9+dfsg-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3.13 arm64 3.13.2-1 [745 kB]
Fetched 745 kB in 0s (32.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ocr9crc/python3.13_3.13.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Fetched 19.7 kB in 0s (1192 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9rbtchaf/libfile-stripnondeterminism-perl_1.14.1-2_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 dpkg-dev all 1.22.15 [1337 kB]
Fetched 1337 kB in 0s (48.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw947smtf/dpkg-dev_1.22.15_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Fetched 43.4 kB in 0s (2643 kB/s)
dpkg-name: info: moved 'file_1%3a5.45-3+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpimc228th/file_5.45-3+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 python3-all arm64 3.13.2-1 [1048 B]
Fetched 1048 B in 0s (62.2 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyhikqdmb/python3-all_3.13.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Fetched 8620 B in 0s (535 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr_l9f09a/dh-strip-nondeterminism_1.14.1-2_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3.13-dev arm64 3.13.2-1 [505 kB]
Fetched 505 kB in 0s (23.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8ift_meb/python3.13-dev_3.13.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 binutils arm64 2.44-2 [261 kB]
Fetched 261 kB in 0s (20.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvu41tfwi/binutils_2.44-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 openssl-provider-legacy arm64 3.4.1-1 [300 kB]
Fetched 300 kB in 0s (15.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3etgyzun/openssl-provider-legacy_3.4.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB]
Fetched 32.2 kB in 0s (1989 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu0rj6zi4/libkrb5support0_1.21.3-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB]
Fetched 30.5 kB in 0s (1622 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7x9fhj_n/libjs-sphinxdoc_8.1.3-5_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Fetched 56.8 kB in 0s (3323 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx9pfi7r8/librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB]
Fetched 35.3 kB in 0s (1964 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb6_fvx1l/libpkgconf3_1.8.1-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 make arm64 4.4.1-1 [453 kB]
Fetched 453 kB in 0s (22.6 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkdxwk58x/make_4.4.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3-packaging all 24.2-1 [55.3 kB]
Fetched 55.3 kB in 0s (3167 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiyo9w3zt/python3-packaging_24.2-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB]
Fetched 77.9 kB in 0s (5184 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnvsc3s26/libpsl-dev_0.21.2-1.1+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libpcre2-8-0 arm64 10.45-1 [262 kB]
Fetched 262 kB in 0s (21.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp62n7ymlv/libpcre2-8-0_10.45-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libaudit-common all 1:4.0.2-2 [12.7 kB]
Fetched 12.7 kB in 0s (776 kB/s)
dpkg-name: info: moved 'libaudit-common_1%3a4.0.2-2_all.deb' to '/srv/rebuilderd/tmp/tmpuj16ajuz/libaudit-common_4.0.2-2_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libgcc-14-dev arm64 14.2.0-17 [2362 kB]
Fetched 2362 kB in 0s (63.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzan6elhc/libgcc-14-dev_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libgnutls-openssl27t64 arm64 3.8.9-2 [452 kB]
Fetched 452 kB in 0s (21.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplr_u_3g1/libgnutls-openssl27t64_3.8.9-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB]
Fetched 1914 kB in 0s (59.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ac9a6w6/libpython3.13-stdlib_3.13.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libgnutls28-dev arm64 3.8.9-2 [1419 kB]
Fetched 1419 kB in 0s (49.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo75_l1p6/libgnutls28-dev_3.8.9-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Fetched 235 kB in 0s (12.6 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm7_si3b9/libssh2-1t64_1.11.1-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Fetched 90.7 kB in 0s (5198 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuz9eft53/libexpat1_2.6.4-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB]
Fetched 31.9 kB in 0s (865 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfxfz_tit/libbz2-dev_1.0.8-6_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB]
Fetched 143 kB in 0s (7053 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6xdgpsz6/libexpat1-dev_2.6.4-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libkadm5clnt-mit12 arm64 1.21.3-4 [41.0 kB]
Fetched 41.0 kB in 0s (2522 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb4e3y_ws/libkadm5clnt-mit12_1.21.3-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libmpc3 arm64 1.3.1-1+b3 [50.5 kB]
Fetched 50.5 kB in 0s (3024 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdgn_c2wd/libmpc3_1.3.1-1+b3_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libseccomp2 arm64 2.5.5-2 [47.0 kB]
Fetched 47.0 kB in 0s (2783 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyl4q0etf/libseccomp2_2.5.5-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Fetched 32.4 kB in 0s (1946 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdlfd9nne/python3-inflect_7.3.1-2_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libcap2 arm64 1:2.73-4 [26.7 kB]
Fetched 26.7 kB in 0s (1644 kB/s)
dpkg-name: info: moved 'libcap2_1%3a2.73-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpoika7nta/libcap2_2.73-4_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Fetched 40.2 kB in 0s (2440 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps_mwtt7h/libpipeline1_1.5.8-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 util-linux arm64 2.40.4-5 [1166 kB]
Fetched 1166 kB in 0s (42.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo2wlyq19/util-linux_2.40.4-5_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 netbase all 6.4 [12.8 kB]
Fetched 12.8 kB in 0s (751 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeyaiyjbz/netbase_6.4_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 comerr-dev arm64 2.1-1.47.2-1 [55.9 kB]
Fetched 55.9 kB in 0s (3299 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuro0owps/comerr-dev_2.1-1.47.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB]
Fetched 112 kB in 0s (6193 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw2qxnw43/libnghttp2-dev_1.64.0-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libhts-dev arm64 1.21+ds-1 [1658 kB]
Fetched 1658 kB in 0s (54.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu87zc_ds/libhts-dev_1.21+ds-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libgcc-s1 arm64 14.2.0-17 [54.1 kB]
Fetched 54.1 kB in 0s (3106 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3wwov86v/libgcc-s1_14.2.0-17_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 diffutils arm64 1:3.10-2 [378 kB]
Fetched 378 kB in 0s (19.3 MB/s)
dpkg-name: info: moved 'diffutils_1%3a3.10-2_arm64.deb' to '/srv/rebuilderd/tmp/tmpl0od5tf_/diffutils_3.10-2_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB]
Fetched 170 kB in 0s (9447 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6u3fu2ni/libevent-2.1-7t64_2.1.12-stable-10+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main arm64 libcurl3t64-gnutls arm64 8.12.1-3 [336 kB]
Fetched 336 kB in 0s (17.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb7si815m/libcurl3t64-gnutls_8.12.1-3_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libc-bin arm64 2.40-7 [546 kB]
Fetched 546 kB in 0s (25.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq9tys5mc/libc-bin_2.40-7_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB]
Fetched 65.3 kB in 0s (3980 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt3a7l5s1/python3-more-itertools_10.6.0-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libpython3.13-dev arm64 3.13.2-1 [4678 kB]
Fetched 4678 kB in 0s (85.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnaj5_7e4/libpython3.13-dev_3.13.2-1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 xz-utils arm64 5.6.3-1+b1 [540 kB]
Fetched 540 kB in 0s (25.0 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgs8lim7l/xz-utils_5.6.3-1+b1_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 libjansson4 arm64 2.14-2+b3 [39.2 kB]
Fetched 39.2 kB in 0s (915 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuq2yfbku/libjansson4_2.14-2+b3_arm64.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Fetched 1568 B in 0s (93.9 kB/s)
dpkg-name: info: moved 'cpp_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpyhucx88x/cpp_14.2.0-1_arm64.deb'
dpkg-buildpackage: info: source package debootsnap-dummy
dpkg-buildpackage: info: source version 1.0
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator <rebuilderd@codethink02-arm64.debian.net>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_auto_install --destdir=debian/debootsnap-dummy/
   dh_install
   dh_installdocs
   dh_installchangelogs
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'.
 dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_arm64.buildinfo
 dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)

The package has been created.
Attention, the package has been created in the /srv/rebuilderd/tmp/tmp7wveh78s/cache directory,
not in ".." as indicated by the message above!
I: automatically chosen mode: unshare
I: chroot architecture arm64 is equal to the host's architecture
I: using /srv/rebuilderd/tmp/mmdebstrap.vf0i5tAdDn as tempdir
I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.vf0i5tAdDn
127.0.0.1 - - [15/Jul/2025 22:22:50] code 404, message File not found
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./InRelease HTTP/1.1" 404 -
Ign:1 http://localhost:41825 ./ InRelease
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./Release HTTP/1.1" 200 -
Get:2 http://localhost:41825 ./ Release [462 B]
127.0.0.1 - - [15/Jul/2025 22:22:50] code 404, message File not found
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./Release.gpg HTTP/1.1" 404 -
Ign:3 http://localhost:41825 ./ Release.gpg
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./Packages HTTP/1.1" 200 -
Get:4 http://localhost:41825 ./ Packages [310 kB]
Fetched 311 kB in 0s (2930 kB/s)
Reading package lists...
usr-is-merged found but not real -- not running merged-usr setup hook
I: skipping apt-get update because it was already run
I: downloading packages with apt...
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./gcc-14-base_14.2.0-17_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./libc6_2.40-7_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./libgcc-s1_14.2.0-17_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./mawk_1.3.4.20250131-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./base-files_13.6_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./libtinfo6_6.5%2b20250216-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./debianutils_5.21_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./bash_5.2.37-1.1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./libcap2_2.73-4_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./libsystemd0_257.3-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./bsdutils_2.40.4-5_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./libacl1_2.3.2-2%2bb1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./libattr1_2.5.2-3_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./libgmp10_6.3.0%2bdfsg-3_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./libpcre2-8-0_10.45-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./libselinux1_3.8-3_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./libzstd1_1.5.6%2bdfsg-2_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./libssl3t64_3.4.1-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./openssl-provider-legacy_3.4.1-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./coreutils_9.5-1%2bb1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./dash_0.5.12-12_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./diffutils_3.10-2_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./libbz2-1.0_1.0.8-6_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./liblzma5_5.6.3-1%2bb1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./libmd0_1.1.0-2%2bb1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./tar_1.35%2bdfsg-3.1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./dpkg_1.22.15_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./findutils_4.10.0-3_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./grep_3.11-4%2bb1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./gzip_1.13-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./hostname_3.25_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./ncurses-bin_6.5%2b20250216-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./libcrypt1_4.4.38-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:50] "GET /./perl-base_5.40.1-2_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./sed_4.9-2%2bb1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./libaudit-common_4.0.2-2_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./libcap-ng0_0.8.5-4_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./libaudit1_4.0.2-2%2bb1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./libdb5.3t64_5.3.28%2bdfsg2-9_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./debconf_1.5.89_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./libpam0g_1.7.0-3_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./libpam-modules-bin_1.7.0-3_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./libpam-modules_1.7.0-3_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./libpam-runtime_1.7.0-3_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./libblkid1_2.40.4-5_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./libmount1_2.40.4-5_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./libsmartcols1_2.40.4-5_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./libudev1_257.3-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./libuuid1_2.40.4-5_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./util-linux_2.40.4-5_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./libdebconfclient0_0.277_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./base-passwd_3.6.6_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./init-system-helpers_1.68_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./libc-bin_2.40-7_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./ncurses-base_6.5%2b20250216-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:22:51] "GET /./sysvinit-utils_3.14-1_arm64.deb HTTP/1.1" 200 -
I: extracting archives...
I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.vf0i5tAdDn
127.0.0.1 - - [15/Jul/2025 22:22:54] code 404, message File not found
127.0.0.1 - - [15/Jul/2025 22:22:54] "GET /./InRelease HTTP/1.1" 404 -
Ign:1 http://localhost:41825 ./ InRelease
127.0.0.1 - - [15/Jul/2025 22:22:54] "GET /./Release HTTP/1.1" 304 -
Hit:2 http://localhost:41825 ./ Release
127.0.0.1 - - [15/Jul/2025 22:22:54] code 404, message File not found
127.0.0.1 - - [15/Jul/2025 22:22:54] "GET /./Release.gpg HTTP/1.1" 404 -
Ign:3 http://localhost:41825 ./ Release.gpg
Reading package lists...
usr-is-merged found but not real -- not running merged-usr extract hook
I: installing essential packages...
I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.vf0i5tAdDn
usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook
I: installing remaining packages inside the chroot...
127.0.0.1 - - [15/Jul/2025 22:23:02] "GET /./libpython3.13-minimal_3.13.2-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:02] "GET /./libexpat1_2.6.4-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:02] "GET /./python3.13-minimal_3.13.2-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:02] "GET /./python3-minimal_3.13.2-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:02] "GET /./media-types_12.0.0_all.deb HTTP/1.1" 200 -
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127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./python3-typeguard_4.4.2-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./python3-inflect_7.3.1-2_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./python3-jaraco.functools_4.1.0-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./python3-pkg-resources_75.8.0-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libgssrpc4t64_1.21.3-4_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libkadm5clnt-mit12_1.21.3-4_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libkdb5-10t64_1.21.3-4_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libkadm5srv-mit12_1.21.3-4_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./krb5-multidev_1.21.3-4_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./python3-pluggy_1.5.0-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libngtcp2-crypto-gnutls-dev_1.9.1-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libgmpxx4ldbl_6.3.0%2bdfsg-3_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libgmp-dev_6.3.0%2bdfsg-3_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./nettle-dev_3.10.1-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./python3-iniconfig_1.1.1-2_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libpkgconf3_1.8.1-4_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./pkgconf-bin_1.8.1-4_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libnghttp3-dev_1.6.0-2_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libevent-2.1-7t64_2.1.12-stable-10%2bb1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libunbound8_1.22.0-1%2bb1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libgnutls-dane0t64_3.8.9-2_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libgnutls-openssl27t64_3.8.9-2_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libtasn1-6-dev_4.20.0-2_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libgnutls28-dev_3.8.9-2_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./librtmp-dev_2.4%2b20151223.gitfa8646d.1-2%2bb5_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libdeflate-dev_1.23-1%2bb1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./python3-zipp_3.21.0-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libkrb5-dev_1.21.3-4_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./samtools_1.21-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./pkgconf_1.8.1-4_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./tabix_1.21%2bds-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./python3-packaging_24.2-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./python3-pytest_8.3.4-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./python3-jaraco.text_4.0.0-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./python3-setuptools_75.8.0-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./dh-python_6.20250108_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libbrotli-dev_1.1.0-2%2bb6_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libldap-dev_2.6.9%2bdfsg-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libnghttp2-dev_1.64.0-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libngtcp2-dev_1.9.1-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libpsl-dev_0.21.2-1.1%2bb1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libcurl4-gnutls-dev_8.12.1-3_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libbz2-dev_1.0.8-6_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./libhts-dev_1.21%2bds-1_arm64.deb HTTP/1.1" 200 -
127.0.0.1 - - [15/Jul/2025 22:23:04] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 -
I: running --customize-hook directly: /srv/rebuilderd/tmp/tmp7wveh78s/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.vf0i5tAdDn
Reading package lists...
Building dependency tree...
Reading state information...
libpam0g is already the newest version (1.7.0-3).
libarchive-zip-perl is already the newest version (1.68-1).
libarchive-zip-perl set to manually installed.
python3-all-dev is already the newest version (3.13.2-1).
python3-all-dev set to manually installed.
dpkg is already the newest version (1.22.15).
python3-jaraco.context is already the newest version (6.0.0-1).
python3-jaraco.context set to manually installed.
sensible-utils is already the newest version (0.0.24).
sensible-utils set to manually installed.
cpp-14-aarch64-linux-gnu is already the newest version (14.2.0-17).
cpp-14-aarch64-linux-gnu set to manually installed.
libatomic1 is already the newest version (14.2.0-17).
libatomic1 set to manually installed.
perl-modules-5.40 is already the newest version (5.40.1-2).
perl-modules-5.40 set to manually installed.
bsdutils is already the newest version (1:2.40.4-5).
libsqlite3-0 is already the newest version (3.46.1-1).
libsqlite3-0 set to manually installed.
libmount1 is already the newest version (2.40.4-5).
libreadline8t64 is already the newest version (8.2-6).
libreadline8t64 set to manually installed.
build-essential is already the newest version (12.12).
build-essential set to manually installed.
dash is already the newest version (0.5.12-12).
libssh2-1-dev is already the newest version (1.11.1-1).
libssh2-1-dev set to manually installed.
libidn2-0 is already the newest version (2.3.7-2+b1).
libidn2-0 set to manually installed.
libaudit1 is already the newest version (1:4.0.2-2+b1).
libunistring5 is already the newest version (1.3-1).
libunistring5 set to manually installed.
libngtcp2-16 is already the newest version (1.9.1-1).
libngtcp2-16 set to manually installed.
cython3 is already the newest version (3.0.11+dfsg-2).
cython3 set to manually installed.
liblzma-dev is already the newest version (5.6.3-1+b1).
liblzma-dev set to manually installed.
libsmartcols1 is already the newest version (2.40.4-5).
libncurses6 is already the newest version (6.5+20250216-1).
libncurses6 set to manually installed.
libidn2-dev is already the newest version (2.3.7-2+b1).
libidn2-dev set to manually installed.
libp11-kit-dev is already the newest version (0.25.5-3).
libp11-kit-dev set to manually installed.
libzstd-dev is already the newest version (1.5.6+dfsg-2).
libzstd-dev set to manually installed.
sed is already the newest version (4.9-2+b1).
libtasn1-6 is already the newest version (4.20.0-2).
libtasn1-6 set to manually installed.
libc6 is already the newest version (2.40-7).
libperl5.40 is already the newest version (5.40.1-2).
libperl5.40 set to manually installed.
python3-pkg-resources is already the newest version (75.8.0-1).
python3-pkg-resources set to manually installed.
libnghttp2-14 is already the newest version (1.64.0-1).
libnghttp2-14 set to manually installed.
libctf-nobfd0 is already the newest version (2.44-2).
libctf-nobfd0 set to manually installed.
krb5-multidev is already the newest version (1.21.3-4).
krb5-multidev set to manually installed.
python3-pluggy is already the newest version (1.5.0-1).
python3-pluggy set to manually installed.
dh-autoreconf is already the newest version (20).
dh-autoreconf set to manually installed.
gettext-base is already the newest version (0.23.1-1).
gettext-base set to manually installed.
media-types is already the newest version (12.0.0).
media-types set to manually installed.
libngtcp2-crypto-gnutls-dev is already the newest version (1.9.1-1).
libngtcp2-crypto-gnutls-dev set to manually installed.
libpam-modules-bin is already the newest version (1.7.0-3).
libpython3-all-dev is already the newest version (3.13.2-1).
libpython3-all-dev set to manually installed.
libbrotli1 is already the newest version (1.1.0-2+b6).
libbrotli1 set to manually installed.
libcrypt-dev is already the newest version (1:4.4.38-1).
libcrypt-dev set to manually installed.
man-db is already the newest version (2.13.0-1).
man-db set to manually installed.
perl is already the newest version (5.40.1-2).
perl set to manually installed.
libstdc++6 is already the newest version (14.2.0-17).
libstdc++6 set to manually installed.
linux-libc-dev is already the newest version (6.12.16-1).
linux-libc-dev set to manually installed.
libkrb5-3 is already the newest version (1.21.3-4).
libkrb5-3 set to manually installed.
libblkid1 is already the newest version (2.40.4-5).
python3-dev is already the newest version (3.13.2-1).
python3-dev set to manually installed.
libjs-underscore is already the newest version (1.13.4~dfsg+~1.11.4-3).
libjs-underscore set to manually installed.
debianutils is already the newest version (5.21).
libsasl2-2 is already the newest version (2.1.28+dfsg1-8+b1).
libsasl2-2 set to manually installed.
base-files is already the newest version (13.6).
libtinfo6 is already the newest version (6.5+20250216-1).
ncurses-bin is already the newest version (6.5+20250216-1).
base-passwd is already the newest version (3.6.6).
libkadm5srv-mit12 is already the newest version (1.21.3-4).
libkadm5srv-mit12 set to manually installed.
sysvinit-utils is already the newest version (3.14-1).
libcc1-0 is already the newest version (14.2.0-17).
libcc1-0 set to manually installed.
zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1).
zlib1g-dev set to manually installed.
g++-14-aarch64-linux-gnu is already the newest version (14.2.0-17).
g++-14-aarch64-linux-gnu set to manually installed.
libhts3t64 is already the newest version (1.21+ds-1).
libhts3t64 set to manually installed.
libitm1 is already the newest version (14.2.0-17).
libitm1 set to manually installed.
libdpkg-perl is already the newest version (1.22.15).
libdpkg-perl set to manually installed.
libcrypt1 is already the newest version (1:4.4.38-1).
libzstd1 is already the newest version (1.5.6+dfsg-2).
libgnutls30t64 is already the newest version (3.8.9-2).
libgnutls30t64 set to manually installed.
libcom-err2 is already the newest version (1.47.2-1).
libcom-err2 set to manually installed.
libpam-modules is already the newest version (1.7.0-3).
python3 is already the newest version (3.13.2-1).
python3 set to manually installed.
cpp-aarch64-linux-gnu is already the newest version (4:14.2.0-1).
cpp-aarch64-linux-gnu set to manually installed.
libpam-runtime is already the newest version (1.7.0-3).
nettle-dev is already the newest version (3.10.1-1).
nettle-dev set to manually installed.
python3-iniconfig is already the newest version (1.1.1-2).
python3-iniconfig set to manually installed.
libudev1 is already the newest version (257.3-1).
libkdb5-10t64 is already the newest version (1.21.3-4).
libkdb5-10t64 set to manually installed.
libldap2 is already the newest version (2.6.9+dfsg-1).
libldap2 set to manually installed.
pkgconf-bin is already the newest version (1.8.1-4).
pkgconf-bin set to manually installed.
libffi8 is already the newest version (3.4.7-1).
libffi8 set to manually installed.
libdeflate0 is already the newest version (1.23-1+b1).
libdeflate0 set to manually installed.
bsdextrautils is already the newest version (2.40.4-5).
bsdextrautils set to manually installed.
libhtscodecs2 is already the newest version (1.6.1-2).
libhtscodecs2 set to manually installed.
libuuid1 is already the newest version (2.40.4-5).
libnghttp3-dev is already the newest version (1.6.0-2).
libnghttp3-dev set to manually installed.
libasan8 is already the newest version (14.2.0-17).
libasan8 set to manually installed.
libicu72 is already the newest version (72.1-6).
libicu72 set to manually installed.
librtmp-dev is already the newest version (2.4+20151223.gitfa8646d.1-2+b5).
librtmp-dev set to manually installed.
libssl-dev is already the newest version (3.4.1-1).
libssl-dev set to manually installed.
gettext is already the newest version (0.23.1-1).
gettext set to manually installed.
bcftools is already the newest version (1.21-1).
bcftools set to manually installed.
gcc-14-base is already the newest version (14.2.0-17).
libattr1 is already the newest version (1:2.5.2-3).
libmd0 is already the newest version (1.1.0-2+b1).
libunbound8 is already the newest version (1.22.0-1+b1).
libunbound8 set to manually installed.
libmpfr6 is already the newest version (4.2.1-1+b2).
libmpfr6 set to manually installed.
libkeyutils1 is already the newest version (1.6.3-4).
libkeyutils1 set to manually installed.
po-debconf is already the newest version (1.0.21+nmu1).
po-debconf set to manually installed.
libdebhelper-perl is already the newest version (13.24.1).
libdebhelper-perl set to manually installed.
libdeflate-dev is already the newest version (1.23-1+b1).
libdeflate-dev set to manually installed.
python3-zipp is already the newest version (3.21.0-1).
python3-zipp set to manually installed.
libpython3-stdlib is already the newest version (3.13.2-1).
libpython3-stdlib set to manually installed.
autoconf is already the newest version (2.72-3).
autoconf set to manually installed.
libtasn1-6-dev is already the newest version (4.20.0-2).
libtasn1-6-dev set to manually installed.
libjs-jquery is already the newest version (3.6.1+dfsg+~3.5.14-1).
libjs-jquery set to manually installed.
libhwasan0 is already the newest version (14.2.0-17).
libhwasan0 set to manually installed.
binutils-aarch64-linux-gnu is already the newest version (2.44-2).
binutils-aarch64-linux-gnu set to manually installed.
libgmp10 is already the newest version (2:6.3.0+dfsg-3).
readline-common is already the newest version (8.2-6).
readline-common set to manually installed.
autopoint is already the newest version (0.23.1-1).
autopoint set to manually installed.
libgprofng0 is already the newest version (2.44-2).
libgprofng0 set to manually installed.
libkrb5-dev is already the newest version (1.21.3-4).
libkrb5-dev set to manually installed.
libc6-dev is already the newest version (2.40-7).
libc6-dev set to manually installed.
g++ is already the newest version (4:14.2.0-1).
g++ set to manually installed.
libacl1 is already the newest version (2.3.2-2+b1).
libbinutils is already the newest version (2.44-2).
libbinutils set to manually installed.
libssl3t64 is already the newest version (3.4.1-1).
libgnutls-dane0t64 is already the newest version (3.8.9-2).
libgnutls-dane0t64 set to manually installed.
libdebconfclient0 is already the newest version (0.277).
libelf1t64 is already the newest version (0.192-4).
libelf1t64 set to manually installed.
libgomp1 is already the newest version (14.2.0-17).
libgomp1 set to manually installed.
libgssapi-krb5-2 is already the newest version (1.21.3-4).
libgssapi-krb5-2 set to manually installed.
libtool is already the newest version (2.5.4-3).
libtool set to manually installed.
samtools is already the newest version (1.21-1).
samtools set to manually installed.
debhelper is already the newest version (13.24.1).
debhelper set to manually installed.
libstdc++-14-dev is already the newest version (14.2.0-17).
libstdc++-14-dev set to manually installed.
tzdata is already the newest version (2025a-2).
tzdata set to manually installed.
zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1).
libnghttp3-9 is already the newest version (1.6.0-2).
libnghttp3-9 set to manually installed.
bash is already the newest version (5.2.37-1.1).
libpsl5t64 is already the newest version (0.21.2-1.1+b1).
libpsl5t64 set to manually installed.
libc-dev-bin is already the newest version (2.40-7).
libc-dev-bin set to manually installed.
coreutils is already the newest version (9.5-1+b1).
libpython3.13-minimal is already the newest version (3.13.2-1).
libpython3.13-minimal set to manually installed.
libubsan1 is already the newest version (14.2.0-17).
libubsan1 set to manually installed.
init-system-helpers is already the newest version (1.68).
liblzma5 is already the newest version (5.6.3-1+b1).
ncurses-base is already the newest version (6.5+20250216-1).
pkgconf is already the newest version (1.8.1-4).
pkgconf set to manually installed.
libgmp-dev is already the newest version (2:6.3.0+dfsg-3).
libgmp-dev set to manually installed.
libgdbm-compat4t64 is already the newest version (1.24-2).
libgdbm-compat4t64 set to manually installed.
automake is already the newest version (1:1.17-3).
automake set to manually installed.
libbz2-1.0 is already the newest version (1.0.8-6).
libnettle8t64 is already the newest version (3.10.1-1).
libnettle8t64 set to manually installed.
libngtcp2-crypto-gnutls8 is already the newest version (1.9.1-1).
libngtcp2-crypto-gnutls8 set to manually installed.
libncursesw6 is already the newest version (6.5+20250216-1).
libncursesw6 set to manually installed.
tabix is already the newest version (1.21+ds-1).
tabix set to manually installed.
groff-base is already the newest version (1.23.0-7).
groff-base set to manually installed.
libuchardet0 is already the newest version (0.0.8-1+b2).
libuchardet0 set to manually installed.
gcc-aarch64-linux-gnu is already the newest version (4:14.2.0-1).
gcc-aarch64-linux-gnu set to manually installed.
patch is already the newest version (2.7.6-7+b1).
patch set to manually installed.
gcc-14 is already the newest version (14.2.0-17).
gcc-14 set to manually installed.
tar is already the newest version (1.35+dfsg-3.1).
libhogweed6t64 is already the newest version (3.10.1-1).
libhogweed6t64 set to manually installed.
dwz is already the newest version (0.15-1+b1).
dwz set to manually installed.
libctf0 is already the newest version (2.44-2).
libctf0 set to manually installed.
m4 is already the newest version (1.4.19-5).
m4 set to manually installed.
g++-aarch64-linux-gnu is already the newest version (4:14.2.0-1).
g++-aarch64-linux-gnu set to manually installed.
libmagic1t64 is already the newest version (1:5.45-3+b1).
libmagic1t64 set to manually installed.
libtsan2 is already the newest version (14.2.0-17).
libtsan2 set to manually installed.
binutils-common is already the newest version (2.44-2).
binutils-common set to manually installed.
grep is already the newest version (3.11-4+b1).
python3-autocommand is already the newest version (2.2.2-3).
python3-autocommand set to manually installed.
rpcsvc-proto is already the newest version (1.4.3-1+b1).
rpcsvc-proto set to manually installed.
libcap-ng0 is already the newest version (0.8.5-4).
libp11-kit0 is already the newest version (0.25.5-3).
libp11-kit0 set to manually installed.
libsasl2-modules-db is already the newest version (2.1.28+dfsg1-8+b1).
libsasl2-modules-db set to manually installed.
hostname is already the newest version (3.25).
python3-jaraco.functools is already the newest version (4.1.0-1).
python3-jaraco.functools set to manually installed.
python3-minimal is already the newest version (3.13.2-1).
python3-minimal set to manually installed.
findutils is already the newest version (4.10.0-3).
libpython3.13 is already the newest version (3.13.2-1).
libpython3.13 set to manually installed.
bzip2 is already the newest version (1.0.8-6).
bzip2 set to manually installed.
intltool-debian is already the newest version (0.35.0+20060710.6).
intltool-debian set to manually installed.
gcc-14-aarch64-linux-gnu is already the newest version (14.2.0-17).
gcc-14-aarch64-linux-gnu set to manually installed.
python3-pytest is already the newest version (8.3.4-1).
python3-pytest set to manually installed.
python3-jaraco.text is already the newest version (4.0.0-1).
python3-jaraco.text set to manually installed.
libisl23 is already the newest version (0.27-1).
libisl23 set to manually installed.
libmagic-mgc is already the newest version (1:5.45-3+b1).
libmagic-mgc set to manually installed.
autotools-dev is already the newest version (20220109.1).
autotools-dev set to manually installed.
libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-0.2+b1).
libxml2 set to manually installed.
dh-python is already the newest version (6.20250108).
dh-python set to manually installed.
libcurl4-gnutls-dev is already the newest version (8.12.1-3).
libcurl4-gnutls-dev set to manually installed.
mawk is already the newest version (1.3.4.20250131-1).
libgdbm6t64 is already the newest version (1.24-2).
libgdbm6t64 set to manually installed.
g++-14 is already the newest version (14.2.0-17).
g++-14 set to manually installed.
libngtcp2-dev is already the newest version (1.9.1-1).
libngtcp2-dev set to manually installed.
python3-setuptools is already the newest version (75.8.0-1).
python3-setuptools set to manually installed.
python3-typeguard is already the newest version (4.4.2-1).
python3-typeguard set to manually installed.
libdb5.3t64 is already the newest version (5.3.28+dfsg2-9).
python3-typing-extensions is already the newest version (4.12.2-2).
python3-typing-extensions set to manually installed.
libbrotli-dev is already the newest version (1.1.0-2+b6).
libbrotli-dev set to manually installed.
gzip is already the newest version (1.13-1).
perl-base is already the newest version (5.40.1-2).
debconf is already the newest version (1.5.89).
libselinux1 is already the newest version (3.8-3).
libpython3-dev is already the newest version (3.13.2-1).
libpython3-dev set to manually installed.
libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-3).
libgmpxx4ldbl set to manually installed.
libsystemd0 is already the newest version (257.3-1).
cpp-14 is already the newest version (14.2.0-17).
cpp-14 set to manually installed.
libk5crypto3 is already the newest version (1.21.3-4).
libk5crypto3 set to manually installed.
liblsan0 is already the newest version (14.2.0-17).
liblsan0 set to manually installed.
libsframe1 is already the newest version (2.44-2).
libsframe1 set to manually installed.
gcc is already the newest version (4:14.2.0-1).
gcc set to manually installed.
libgssrpc4t64 is already the newest version (1.21.3-4).
libgssrpc4t64 set to manually installed.
python3.13-minimal is already the newest version (3.13.2-1).
python3.13-minimal set to manually installed.
libldap-dev is already the newest version (2.6.9+dfsg-1).
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python3.13 is already the newest version (3.13.2-1).
python3.13 set to manually installed.
libfile-stripnondeterminism-perl is already the newest version (1.14.1-2).
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dpkg-dev is already the newest version (1.22.15).
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file is already the newest version (1:5.45-3+b1).
file set to manually installed.
python3-all is already the newest version (3.13.2-1).
python3-all set to manually installed.
dh-strip-nondeterminism is already the newest version (1.14.1-2).
dh-strip-nondeterminism set to manually installed.
python3.13-dev is already the newest version (3.13.2-1).
python3.13-dev set to manually installed.
binutils is already the newest version (2.44-2).
binutils set to manually installed.
openssl-provider-legacy is already the newest version (3.4.1-1).
libkrb5support0 is already the newest version (1.21.3-4).
libkrb5support0 set to manually installed.
libjs-sphinxdoc is already the newest version (8.1.3-5).
libjs-sphinxdoc set to manually installed.
librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b5).
librtmp1 set to manually installed.
libpkgconf3 is already the newest version (1.8.1-4).
libpkgconf3 set to manually installed.
make is already the newest version (4.4.1-1).
make set to manually installed.
python3-packaging is already the newest version (24.2-1).
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libpsl-dev is already the newest version (0.21.2-1.1+b1).
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libpcre2-8-0 is already the newest version (10.45-1).
libaudit-common is already the newest version (1:4.0.2-2).
libgcc-14-dev is already the newest version (14.2.0-17).
libgcc-14-dev set to manually installed.
libgnutls-openssl27t64 is already the newest version (3.8.9-2).
libgnutls-openssl27t64 set to manually installed.
libpython3.13-stdlib is already the newest version (3.13.2-1).
libpython3.13-stdlib set to manually installed.
libgnutls28-dev is already the newest version (3.8.9-2).
libgnutls28-dev set to manually installed.
libssh2-1t64 is already the newest version (1.11.1-1).
libssh2-1t64 set to manually installed.
libexpat1 is already the newest version (2.6.4-1).
libexpat1 set to manually installed.
libbz2-dev is already the newest version (1.0.8-6).
libbz2-dev set to manually installed.
libexpat1-dev is already the newest version (2.6.4-1).
libexpat1-dev set to manually installed.
libkadm5clnt-mit12 is already the newest version (1.21.3-4).
libkadm5clnt-mit12 set to manually installed.
libmpc3 is already the newest version (1.3.1-1+b3).
libmpc3 set to manually installed.
libseccomp2 is already the newest version (2.5.5-2).
libseccomp2 set to manually installed.
python3-inflect is already the newest version (7.3.1-2).
python3-inflect set to manually installed.
libcap2 is already the newest version (1:2.73-4).
libpipeline1 is already the newest version (1.5.8-1).
libpipeline1 set to manually installed.
util-linux is already the newest version (2.40.4-5).
netbase is already the newest version (6.4).
netbase set to manually installed.
comerr-dev is already the newest version (2.1-1.47.2-1).
comerr-dev set to manually installed.
libnghttp2-dev is already the newest version (1.64.0-1).
libnghttp2-dev set to manually installed.
libhts-dev is already the newest version (1.21+ds-1).
libhts-dev set to manually installed.
libgcc-s1 is already the newest version (14.2.0-17).
diffutils is already the newest version (1:3.10-2).
libevent-2.1-7t64 is already the newest version (2.1.12-stable-10+b1).
libevent-2.1-7t64 set to manually installed.
libcurl3t64-gnutls is already the newest version (8.12.1-3).
libcurl3t64-gnutls set to manually installed.
libc-bin is already the newest version (2.40-7).
python3-more-itertools is already the newest version (10.6.0-1).
python3-more-itertools set to manually installed.
libpython3.13-dev is already the newest version (3.13.2-1).
libpython3.13-dev set to manually installed.
xz-utils is already the newest version (5.6.3-1+b1).
xz-utils set to manually installed.
libjansson4 is already the newest version (2.14-2+b3).
libjansson4 set to manually installed.
cpp is already the newest version (4:14.2.0-1).
cpp set to manually installed.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.vf0i5tAdDn
(Reading database ... 18407 files and directories currently installed.)
Removing debootsnap-dummy (1.0) ...
I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.vf0i5tAdDn
I: running special hook: download /pkglist ./pkglist
I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.vf0i5tAdDn
I: running special hook: upload sources.list /etc/apt/sources.list
I: waiting for background processes to finish...
I: cleaning package lists and apt cache...
I: skipping cleanup/reproducible as requested
I: creating tarball...
I: done
I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.vf0i5tAdDn...
I: success in 54.4921 seconds

Downloading dependency 133 of 255: libc-dev-bin:arm64=2.40-7
Downloading dependency 134 of 255: coreutils:arm64=9.5-1+b1
Downloading dependency 135 of 255: libpython3.13-minimal:arm64=3.13.2-1
Downloading dependency 136 of 255: libubsan1:arm64=14.2.0-17
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Downloading dependency 138 of 255: liblzma5:arm64=5.6.3-1+b1
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Downloading dependency 255 of 255: cpp:arm64=4:14.2.0-1
env --chdir=/srv/rebuilderd/tmp/rebuilderdwElp5b/out DEB_BUILD_OPTIONS=parallel=8 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1740602153 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildYds7o6/debrebuild.sbuildrc.AYDueoKwfRrW sbuild --build=arm64 --host=arm64 --no-source --arch-any --no-arch-all --binNMU-changelog=
python-pysam (0.23.0+ds-1+b1) sid; urgency=low, binary-only=yes

  * Binary-only non-maintainer upload for arm64; no source changes.
  * Rebuild with Python 3.13 only

 -- arm Build Daemon (arm-conova-03) <buildd_arm64-arm-conova-03@buildd.debian.org>  Wed, 26 Feb 2025 20:35:53 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildYds7o6/debrebuild.tar.kieIFYJEZXKD --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=python-pysam-0.23.0+ds /srv/rebuilderd/tmp/rebuilderdwElp5b/inputs/python-pysam_0.23.0+ds-1.dsc
I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl
The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future.
To start using "unshare" add this to your `~/.config/sbuild/config.pl`:
	$chroot_mode = "unshare";
If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`:
	$chroot_mode = "schroot";
	$schroot = "schroot";
sbuild: warning:                descr(l1): found blank line where expected first heading
sbuild (Debian sbuild) 0.89.3 (07 June 2025) on codethink02-arm64

+==============================================================================+
| python-pysam 0.23.0+ds-1+b1 (arm64)          Tue, 15 Jul 2025 21:23:45 +0000 |
+==============================================================================+

Package: python-pysam
Version: 0.23.0+ds-1+b1
Source Version: 0.23.0+ds-1
Distribution: unstable
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any

I: No tarballs found in /srv/rebuilderd/.cache/sbuild
I: Unpacking /srv/rebuilderd/tmp/debrebuildYds7o6/debrebuild.tar.kieIFYJEZXKD to /srv/rebuilderd/tmp/tmp.sbuild.IQwg9Jwyof...
I: Setting up the chroot...
I: Creating chroot session...
I: Setting up log color...
I: Setting up apt archive...

+------------------------------------------------------------------------------+
| Fetch source files                           Tue, 15 Jul 2025 21:23:52 +0000 |
+------------------------------------------------------------------------------+


Local sources
-------------

/srv/rebuilderd/tmp/rebuilderdwElp5b/inputs/python-pysam_0.23.0+ds-1.dsc exists in /srv/rebuilderd/tmp/rebuilderdwElp5b/inputs; copying to chroot
sbuild: warning:                descr(l1): found blank line where expected first heading

+------------------------------------------------------------------------------+
| Install package build dependencies           Tue, 15 Jul 2025 21:23:55 +0000 |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-elje0i/apt_archive/sbuild-build-depends-main-dummy.deb'.

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies

+------------------------------------------------------------------------------+
| Check architectures                          Tue, 15 Jul 2025 21:24:01 +0000 |
+------------------------------------------------------------------------------+

Arch check ok (arm64 included in any all)

+------------------------------------------------------------------------------+
| Build environment                            Tue, 15 Jul 2025 21:24:01 +0000 |
+------------------------------------------------------------------------------+

Kernel: Linux 6.12.35+deb13-cloud-arm64 #1 SMP Debian 6.12.35-1 (2025-07-03) arm64 (aarch64)
Toolchain package versions: binutils_2.44-2 dpkg-dev_1.22.15 g++-14_14.2.0-17 gcc-14_14.2.0-17 libc6-dev_2.40-7 libstdc++-14-dev_14.2.0-17 libstdc++6_14.2.0-17 linux-libc-dev_6.12.16-1
Package versions: autoconf_2.72-3 automake_1:1.17-3 autopoint_0.23.1-1 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.6 bash_5.2.37-1.1 bcftools_1.21-1 binutils_2.44-2 binutils-aarch64-linux-gnu_2.44-2 binutils-common_2.44-2 bsdextrautils_2.40.4-5 bsdutils_1:2.40.4-5 build-essential_12.12 bzip2_1.0.8-6 comerr-dev_2.1-1.47.2-1 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-17 cpp-14-aarch64-linux-gnu_14.2.0-17 cpp-aarch64-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-2 dash_0.5.12-12 debconf_1.5.89 debhelper_13.24.1 debianutils_5.21 dh-autoreconf_20 dh-python_6.20250108 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-2 dpkg_1.22.15 dpkg-dev_1.22.15 dwz_0.15-1+b1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-17 g++-14-aarch64-linux-gnu_14.2.0-17 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-17 gcc-14-aarch64-linux-gnu_14.2.0-17 gcc-14-base_14.2.0-17 gcc-aarch64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4+b1 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.21.3-4 libacl1_2.3.2-2+b1 libarchive-zip-perl_1.68-1 libasan8_14.2.0-17 libatomic1_14.2.0-17 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b1 libbinutils_2.44-2 libblkid1_2.40.4-5 libbrotli-dev_1.1.0-2+b6 libbrotli1_1.1.0-2+b6 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.40-7 libc-dev-bin_2.40-7 libc6_2.40-7 libc6-dev_2.40-7 libcap-ng0_0.8.5-4 libcap2_1:2.73-4 libcc1-0_14.2.0-17 libcom-err2_1.47.2-1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-2 libctf0_2.44-2 libcurl3t64-gnutls_8.12.1-3 libcurl4-gnutls-dev_8.12.1-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.277 libdebhelper-perl_13.24.1 libdeflate-dev_1.23-1+b1 libdeflate0_1.23-1+b1 libdpkg-perl_1.22.15 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.6.4-1 libexpat1-dev_2.6.4-1 libffi8_3.4.7-1 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.2.0-17 libgcc-s1_14.2.0-17 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp-dev_2:6.3.0+dfsg-3 libgmp10_2:6.3.0+dfsg-3 libgmpxx4ldbl_2:6.3.0+dfsg-3 libgnutls-dane0t64_3.8.9-2 libgnutls-openssl27t64_3.8.9-2 libgnutls28-dev_3.8.9-2 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-17 libgprofng0_2.44-2 libgssapi-krb5-2_1.21.3-4 libgssrpc4t64_1.21.3-4 libhogweed6t64_3.10.1-1 libhts-dev_1.21+ds-1 libhts3t64_1.21+ds-1 libhtscodecs2_1.6.1-2 libhwasan0_14.2.0-17 libicu72_72.1-6 libidn2-0_2.3.7-2+b1 libidn2-dev_2.3.7-2+b1 libisl23_0.27-1 libitm1_14.2.0-17 libjansson4_2.14-2+b3 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_8.1.3-5 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.21.3-4 libkadm5clnt-mit12_1.21.3-4 libkadm5srv-mit12_1.21.3-4 libkdb5-10t64_1.21.3-4 libkeyutils1_1.6.3-4 libkrb5-3_1.21.3-4 libkrb5-dev_1.21.3-4 libkrb5support0_1.21.3-4 libldap-dev_2.6.9+dfsg-1 libldap2_2.6.9+dfsg-1 liblsan0_14.2.0-17 liblzma-dev_5.6.3-1+b1 liblzma5_5.6.3-1+b1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmd0_1.1.0-2+b1 libmount1_2.40.4-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libncurses6_6.5+20250216-1 libncursesw6_6.5+20250216-1 libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1 libnghttp2-dev_1.64.0-1 libnghttp3-9_1.6.0-2 libnghttp3-dev_1.6.0-2 libngtcp2-16_1.9.1-1 libngtcp2-crypto-gnutls-dev_1.9.1-1 libngtcp2-crypto-gnutls8_1.9.1-1 libngtcp2-dev_1.9.1-1 libp11-kit-dev_0.25.5-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-2 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libpython3-all-dev_3.13.2-1 libpython3-dev_3.13.2-1 libpython3-stdlib_3.13.2-1 libpython3.13_3.13.2-1 libpython3.13-dev_3.13.2-1 libpython3.13-minimal_3.13.2-1 libpython3.13-stdlib_3.13.2-1 libreadline8t64_8.2-6 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-8+b1 libsasl2-modules-db_2.1.28+dfsg1-8+b1 libseccomp2_2.5.5-2 libselinux1_3.8-3 libsframe1_2.44-2 libsmartcols1_2.40.4-5 libsqlite3-0_3.46.1-1 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.4.1-1 libssl3t64_3.4.1-1 libstdc++-14-dev_14.2.0-17 libstdc++6_14.2.0-17 libsystemd0_257.3-1 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtinfo6_6.5+20250216-1 libtool_2.5.4-3 libtsan2_14.2.0-17 libubsan1_14.2.0-17 libuchardet0_0.0.8-1+b2 libudev1_257.3-1 libunbound8_1.22.0-1+b1 libunistring5_1.3-1 libuuid1_2.40.4-5 libxml2_2.12.7+dfsg+really2.9.14-0.2+b1 libzstd-dev_1.5.6+dfsg-2 libzstd1_1.5.6+dfsg-2 linux-libc-dev_6.12.16-1 m4_1.4.19-5 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20250131-1 media-types_12.0.0 ncurses-base_6.5+20250216-1 ncurses-bin_6.5+20250216-1 netbase_6.4 nettle-dev_3.10.1-1 openssl-provider-legacy_3.4.1-1 patch_2.7.6-7+b1 perl_5.40.1-2 perl-base_5.40.1-2 perl-modules-5.40_5.40.1-2 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 python3_3.13.2-1 python3-all_3.13.2-1 python3-all-dev_3.13.2-1 python3-autocommand_2.2.2-3 python3-dev_3.13.2-1 python3-inflect_7.3.1-2 python3-iniconfig_1.1.1-2 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-minimal_3.13.2-1 python3-more-itertools_10.6.0-1 python3-packaging_24.2-1 python3-pkg-resources_75.8.0-1 python3-pluggy_1.5.0-1 python3-pytest_8.3.4-1 python3-setuptools_75.8.0-1 python3-typeguard_4.4.2-1 python3-typing-extensions_4.12.2-2 python3-zipp_3.21.0-1 python3.13_3.13.2-1 python3.13-dev_3.13.2-1 python3.13-minimal_3.13.2-1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1+b1 samtools_1.21-1 sed_4.9-2+b1 sensible-utils_0.0.24 sysvinit-utils_3.14-1 tabix_1.21+ds-1 tar_1.35+dfsg-3.1 tzdata_2025a-2 util-linux_2.40.4-5 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1

+------------------------------------------------------------------------------+
| Build                                        Tue, 15 Jul 2025 21:24:01 +0000 |
+------------------------------------------------------------------------------+


Unpack source
-------------

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Hash: SHA512

Format: 3.0 (quilt)
Source: python-pysam
Binary: python3-pysam, python-pysam-tests
Architecture: any all
Version: 0.23.0+ds-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>, Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://pysam.readthedocs.org/en/latest
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/python-pysam
Vcs-Git: https://salsa.debian.org/med-team/python-pysam.git
Testsuite: autopkgtest, autopkgtest-pkg-python
Testsuite-Triggers: @builddeps@
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix <!nocheck>, samtools <!nocheck>, bcftools <!nocheck>, python3-pytest <!nocheck>
Package-List:
 python-pysam-tests deb python optional arch=all
 python3-pysam deb python optional arch=any
Checksums-Sha1:
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 8d5169d2640519f5b5d265b7988a8a5bb66593ef 10632 python-pysam_0.23.0+ds-1.debian.tar.xz
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Files:
 13b8d89edd6fcb0dd9e1316d392a56bc 1519052 python-pysam_0.23.0+ds.orig.tar.xz
 0d2415af082e79088a530fe11a211864 10632 python-pysam_0.23.0+ds-1.debian.tar.xz

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dpkg-source: warning: cannot verify inline signature for ./python-pysam_0.23.0+ds-1.dsc: unsupported subcommand
dpkg-source: info: extracting python-pysam in /build/reproducible-path/python-pysam-0.23.0+ds
dpkg-source: info: unpacking python-pysam_0.23.0+ds.orig.tar.xz
dpkg-source: info: unpacking python-pysam_0.23.0+ds-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying skip_test_remote.patch
dpkg-source: info: applying clean_less
dpkg-source: info: applying skip-test-on-32-bit.patch

Check disk space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 0.23.0+ds-1+b1

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=8
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LC_COLLATE=C.UTF-8
LC_CTYPE=C.UTF-8
LOGNAME=sbuild
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
SOURCE_DATE_EPOCH=1740602153
USER=sbuild

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -B
dpkg-buildpackage: info: source package python-pysam
dpkg-buildpackage: info: source version 0.23.0+ds-1+b1
dpkg-buildpackage: info: source distribution sid
dpkg-buildpackage: info: source changed by arm Build Daemon (arm-conova-03) <buildd_arm64-arm-conova-03@buildd.debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
cd tests/pysam_data && /usr/bin/make clean
make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data'
rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \
all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \
ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \
with_md.sam.gz \
*.fq.gz
make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data'
cd tests/cbcf_data && /usr/bin/make clean
make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data'
rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf
make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data'
find . -name "*.pyc" -delete
find . -name "*.pyxbldc" -delete
find . -name "tmp_*.bam" -delete
find . -name "*.bai*" -delete
find . -name "*.cram*" -delete
find . -name "pysam_uncompressed.bam" -delete
rm -rf	tests/pysam_test_work \
	tests/example_htslib.gtf.gz.tbi \
	tests/log.txt \
	tests/test.bam \
	tests/_compile_test.c \
	tests/pysam_ex2.sam \
	tests/__pycache__ \
	pysam/calignmentfile.c \
	pysam/cbcf.c \
	tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \
	tests/pysam_data/ex1.fa.gz \
	tests/pysam_data/ex1.fa.gz.gzi \
	tests/pysam_data/ex1_csi.bam.csi
rm -rf .pytest_cache/
dh clean --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds'
dh_auto_clean
I: pybuild base:311: python3.13 setup.py clean 
# pysam: cython is available - using cythonize if necessary
# pysam: htslib mode is external
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
running clean
removing '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
rm -f \
	pysam/config.py \
	pysam/config.h \
	pysam/lib*.c \
	samtools/config.h \
	bcftools/config.h
rm -rf pysam.egg-info
make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config 
# pysam: cython is available - using cythonize if necessary
# pysam: htslib mode is external
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py build 
# pysam: cython is available - using cythonize if necessary
# pysam: htslib mode is external
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
running build
running build_py
creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/version.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include
copying pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include
running egg_info
creating pysam.egg-info
writing pysam.egg-info/PKG-INFO
writing dependency_links to pysam.egg-info/dependency_links.txt
writing top-level names to pysam.egg-info/top_level.txt
writing manifest file 'pysam.egg-info/SOURCES.txt'
reading manifest file 'pysam.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'KNOWN_BUGS'
warning: no files found matching 'THANKS'
warning: no files found matching 'pysam/libc*.c'
warning: no files found matching 'win32/*.[ch]'
warning: no files found matching 'htslib/LICENSE'
warning: no files found matching 'htslib/README'
warning: no files found matching '*.[ch]' under directory 'htslib'
warning: no previously-included files found matching 'htslib/*config*.h'
warning: no files found matching 'htslib/configure.ac'
warning: no files found matching 'htslib/m4/*.m4'
warning: no files found matching 'htslib/*.in'
warning: no files found matching 'htslib/configure'
warning: no files found matching 'htslib/config.guess'
warning: no files found matching 'htslib/config.sub'
warning: no files found matching 'htslib/version.sh'
warning: no files found matching 'htslib/Makefile'
warning: no files found matching 'htslib/*.mk'
warning: no previously-included files found matching 'htslib/config.mk'
warning: no previously-included files found matching 'htslib/htscodecs.mk'
adding license file 'COPYING'
adding license file 'AUTHORS'
writing manifest file 'pysam.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'pysam.include.samtools.lz4' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'pysam.include.samtools.lz4' to be distributed and are
        already explicitly excluding 'pysam.include.samtools.lz4' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
copying pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/version.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4
copying samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4
copying samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4
copying samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4
copying samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4
copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
running build_ext
Compiling pysam/libchtslib.pyx because it changed.
[1/1] Cythonizing pysam/libchtslib.pyx
building 'pysam.libchtslib' extension
creating build/temp.linux-aarch64-cpython-313/pysam
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/htslib_util.c -o build/temp.linux-aarch64-cpython-313/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libchtslib.c -o build/temp.linux-aarch64-cpython-313/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libchtslib.c:2924:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 2924 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/pysam/htslib_util.o build/temp.linux-aarch64-cpython-313/pysam/libchtslib.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/aarch64-linux-gnu -lz -lhts -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.cpython-313-aarch64-linux-gnu.so -Wl,-rpath,$ORIGIN
creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension
Compiling pysam/libcsamtools.pyx because it changed.
[1/1] Cythonizing pysam/libcsamtools.pyx
building 'pysam.libcsamtools' extension
creating build/temp.linux-aarch64-cpython-313/samtools
creating build/temp.linux-aarch64-cpython-313/samtools/lz4
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcsamtools.c -o build/temp.linux-aarch64-cpython-313/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_color.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_import.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_index.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_md.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_split.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bamtk.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bedcov.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bedidx.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/coverage.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/cram_size.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/cut_target.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/dict.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/faidx.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/lz4/lz4.c -o build/temp.linux-aarch64-cpython-313/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/padding.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/phase.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/reference.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/reset.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sam_view.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sample.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/samtools.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/stats.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-aarch64-cpython-313/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/pysam/libcsamtools.o build/temp.linux-aarch64-cpython-313/samtools/amplicon_stats.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam2depth.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_addrprg.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_aux.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_cat.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_color.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_consensus.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_fastq.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_flags.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_import.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_index.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_lpileup.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_markdup.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_mate.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_md.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_plbuf.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_plcmd.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_quickcheck.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_reheader.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_rmdup.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_rmdupse.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_samples.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_sort.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_split.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bam_stat.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bamshuf.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bamtk.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bedcov.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/bedidx.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/consensus_pileup.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/coverage.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/cram_size.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/cut_target.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/dict.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/faidx.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/lz4/lz4.o build/temp.linux-aarch64-cpython-313/samtools/padding.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/phase.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/reference.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/reset.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/sam_opts.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/sam_utils.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/sam_view.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/sample.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/samtools.pysam.o build/temp.linux-aarch64-cpython-313/samtools/stats.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/stats_isize.c.pysam.o build/temp.linux-aarch64-cpython-313/samtools/tmp_file.c.pysam.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/aarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-aarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.cpython-313-aarch64-linux-gnu.so -Wl,-rpath,$ORIGIN
Compiling pysam/libcbcftools.pyx because it changed.
[1/1] Cythonizing pysam/libcbcftools.pyx
building 'pysam.libcbcftools' extension
creating build/temp.linux-aarch64-cpython-313/bcftools
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/HMM.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/abuf.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_edlib.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/bam2bcf_edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bcftools.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bin.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/ccall.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/cols.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/consensus.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/convert.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/csq.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/dist.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/edlib.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/em.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/extsort.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/filter.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/gff.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/hclust.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/kmin.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/main.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/mcall.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/prob1.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/regidx.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/reheader.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/tabix.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/version.c.pysam.c -o build/temp.linux-aarch64-cpython-313/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcbcftools.c -o build/temp.linux-aarch64-cpython-313/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/bcftools/HMM.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/abuf.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/bam2bcf.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/bam2bcf_edlib.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/bam_sample.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/bcftools.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/bin.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/ccall.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/cols.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/consensus.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/convert.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/csq.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/dist.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/edlib.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/em.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/extsort.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/filter.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/gff.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/gvcf.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/hclust.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/kmin.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/main.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/mcall.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/mpileup.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/ploidy.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/prob1.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/read_consensus.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/regidx.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/reheader.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/smpl_ilist.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/str_finder.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/tabix.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/tsv2vcf.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfannotate.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfbuf.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfcall.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfcnv.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfconcat.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfconvert.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcffilter.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfhead.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfindex.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfisec.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfmerge.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfnorm.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfplugin.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfquery.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfroh.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfsom.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfsort.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfstats.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcfview.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/vcmp.c.pysam.o build/temp.linux-aarch64-cpython-313/bcftools/version.c.pysam.o build/temp.linux-aarch64-cpython-313/pysam/libcbcftools.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/aarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-aarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.cpython-313-aarch64-linux-gnu.so -Wl,-rpath,$ORIGIN
Compiling pysam/libcutils.pyx because it changed.
[1/1] Cythonizing pysam/libcutils.pyx
building 'pysam.libcutils' extension
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcutils.c -o build/temp.linux-aarch64-cpython-313/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcutils.c:2473:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 2473 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/pysam_util.c -o build/temp.linux-aarch64-cpython-313/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/pysam/libcutils.o build/temp.linux-aarch64-cpython-313/pysam/pysam_util.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/aarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-aarch64-linux-gnu -lcsamtools.cpython-313-aarch64-linux-gnu -lcbcftools.cpython-313-aarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.cpython-313-aarch64-linux-gnu.so -Wl,-rpath,$ORIGIN
warning: pysam/libcalignmentfile.pyx:2567:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2572:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2577:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2616:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2621:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2626:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
Compiling pysam/libcalignmentfile.pyx because it changed.
[1/1] Cythonizing pysam/libcalignmentfile.pyx
building 'pysam.libcalignmentfile' extension
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcalignmentfile.c -o build/temp.linux-aarch64-cpython-313/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcalignmentfile.c:3785:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 3785 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
pysam/libcalignmentfile.c: In function ‘__pyx_pf_5pysam_17libcalignmentfile_13AlignmentFile_6_open’:
pysam/libcalignmentfile.c:20533:20: warning: ignoring return value of ‘sam_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
20533 |             (void)(sam_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_hdr));
      |                   ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcalignmentfile.c: In function ‘__pyx_f_5pysam_17libcalignmentfile_20IteratorRowSelection_cnext’:
pysam/libcalignmentfile.c:37169:16: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
37169 |         (void)(bgzf_seek(hts_get_bgzfp(__pyx_v_self->__pyx_base.htsfile), __pyx_v_pos, 0));
      |               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/pysam/libcalignmentfile.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/aarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-aarch64-linux-gnu -lcutils.cpython-313-aarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.cpython-313-aarch64-linux-gnu.so -Wl,-rpath,$ORIGIN
Compiling pysam/libcsamfile.pyx because it changed.
[1/1] Cythonizing pysam/libcsamfile.pyx
building 'pysam.libcsamfile' extension
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcsamfile.c -o build/temp.linux-aarch64-cpython-313/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcsamfile.c:3296:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 3296 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/pysam/libcsamfile.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/aarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-aarch64-linux-gnu -lcutils.cpython-313-aarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.cpython-313-aarch64-linux-gnu.so -Wl,-rpath,$ORIGIN
Compiling pysam/libcalignedsegment.pyx because it changed.
[1/1] Cythonizing pysam/libcalignedsegment.pyx
building 'pysam.libcalignedsegment' extension
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcalignedsegment.c -o build/temp.linux-aarch64-cpython-313/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcalignedsegment.c:4315:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 4315 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/pysam/libcalignedsegment.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/aarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-aarch64-linux-gnu -lcutils.cpython-313-aarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.cpython-313-aarch64-linux-gnu.so -Wl,-rpath,$ORIGIN
Compiling pysam/libctabix.pyx because it changed.
[1/1] Cythonizing pysam/libctabix.pyx
building 'pysam.libctabix' extension
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libctabix.c -o build/temp.linux-aarch64-cpython-313/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libctabix.c:3568:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 3568 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/pysam/libctabix.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/aarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-aarch64-linux-gnu -lcutils.cpython-313-aarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.cpython-313-aarch64-linux-gnu.so -Wl,-rpath,$ORIGIN
Compiling pysam/libcfaidx.pyx because it changed.
[1/1] Cythonizing pysam/libcfaidx.pyx
building 'pysam.libcfaidx' extension
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcfaidx.c -o build/temp.linux-aarch64-cpython-313/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcfaidx.c:3030:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 3030 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/pysam/libcfaidx.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/aarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-aarch64-linux-gnu -lcutils.cpython-313-aarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.cpython-313-aarch64-linux-gnu.so -Wl,-rpath,$ORIGIN
Compiling pysam/libcbcf.pyx because it changed.
[1/1] Cythonizing pysam/libcbcf.pyx
building 'pysam.libcbcf' extension
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcbcf.c -o build/temp.linux-aarch64-cpython-313/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcbcf.c:4107:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 4107 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
pysam/libcbcf.c: In function ‘__pyx_f_5pysam_7libcbcf_11VariantFile_write’:
pysam/libcbcf.c:85824:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
85824 |           (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr));
      |                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_6close’:
pysam/libcbcf.c:80500:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
80500 |           (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr));
      |                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_13VariantHeader_20add_meta’:
pysam/libcbcf.c:44209:11: warning: ignoring return value of ‘bcf_hrec_add_key’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
44209 |           bcf_hrec_add_key(__pyx_v_hrec, __pyx_t_17, ((int)__pyx_t_18));
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c:44235:11: warning: ignoring return value of ‘bcf_hrec_set_val’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
44235 |           bcf_hrec_set_val(__pyx_v_hrec, (__pyx_v_hrec->nkeys - 1), __pyx_t_19, ((int)__pyx_t_18), __pyx_v_quoted);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_4__dealloc__’:
pysam/libcbcf.c:80195:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
80195 |           (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr));
      |                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/pysam/libcbcf.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/aarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-aarch64-linux-gnu -lcutils.cpython-313-aarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.cpython-313-aarch64-linux-gnu.so -Wl,-rpath,$ORIGIN
Compiling pysam/libcbgzf.pyx because it changed.
[1/1] Cythonizing pysam/libcbgzf.pyx
building 'pysam.libcbgzf' extension
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcbgzf.c -o build/temp.linux-aarch64-cpython-313/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcbgzf.c:2482:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 2482 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/pysam/libcbgzf.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/aarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-aarch64-linux-gnu -lcutils.cpython-313-aarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.cpython-313-aarch64-linux-gnu.so -Wl,-rpath,$ORIGIN
Compiling pysam/libctabixproxies.pyx because it changed.
[1/1] Cythonizing pysam/libctabixproxies.pyx
building 'pysam.libctabixproxies' extension
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libctabixproxies.c -o build/temp.linux-aarch64-cpython-313/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libctabixproxies.c:3086:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 3086 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/pysam/libctabixproxies.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/aarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-aarch64-linux-gnu -lcutils.cpython-313-aarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.cpython-313-aarch64-linux-gnu.so -Wl,-rpath,$ORIGIN
warning: pysam/libcvcf.pyx:1083:27: Unreachable code
Compiling pysam/libcvcf.pyx because it changed.
[1/1] Cythonizing pysam/libcvcf.pyx
building 'pysam.libcvcf' extension
aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcvcf.c -o build/temp.linux-aarch64-cpython-313/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcvcf.c:3697:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 3697 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/pysam/libcvcf.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/aarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-aarch64-linux-gnu -lcutils.cpython-313-aarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.cpython-313-aarch64-linux-gnu.so -Wl,-rpath,$ORIGIN
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds'
cd tests/pysam_data && /usr/bin/make all
make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data'
samtools faidx ex1.fa
samtools view --no-PG -bo ex1.bam -t ex1.fa.fai ex1.sam.gz
samtools mpileup -f ex1.fa ex1.bam | gzip > ex1.pileup.gz
[mpileup] 1 samples in 1 input files
gunzip < ex1.sam.gz > ex1.sam
samtools index ex1.bam
samtools view --no-PG -h ex1.bam | gzip > ex2.sam.gz
gunzip < ex2.sam.gz > ex2.sam
samtools view --no-PG -bo ex2.bam ex2.sam
samtools index ex2.bam
samtools calmd --no-PG --output-fmt BAM ex2.bam ex1.fa > with_md.sam.gz
[bam_fillmd1] different NM for read 'EAS139_11:7:46:695:738': 3 -> 8
[bam_fillmd1] different NM for read 'EAS218_4:1:48:9:409': 0 -> 5
[bam_fillmd1] different NM for read 'B7_591:7:200:192:373': 0 -> 5
[bam_fillmd1] different NM for read 'EAS56_65:1:163:846:223': 0 -> 5
[bam_fillmd1] different NM for read 'EAS114_30:7:283:799:560': 0 -> 5
[bam_fillmd1] different NM for read 'B7_595:4:84:802:737': 0 -> 4
[bam_fillmd1] different NM for read 'EAS51_66:5:308:400:602': 0 -> 3
[bam_fillmd1] different NM for read 'EAS54_81:2:285:367:932': 0 -> 3
[bam_fillmd1] different NM for read 'EAS114_39:1:70:147:84': 0 -> 3
[bam_fillmd1] different NM for read 'EAS56_53:1:124:243:35': 2 -> 5
[bam_fillmd1] different NM for read 'EAS1_103:2:226:302:758': 2 -> 3
[bam_fillmd1] different NM for read 'EAS114_28:6:175:705:982': 1 -> 0
[bam_fillmd1] different NM for read 'EAS51_64:4:179:389:585': 7 -> 8
[bam_fillmd1] different NM for read 'B7_589:1:122:337:968': 3 -> 2
[bam_fillmd1] different NM for read 'B7_610:4:15:805:420': 4 -> 5
[bam_fillmd1] different NM for read 'B7_591:2:279:124:41': 2 -> 4
[bam_fillmd1] different NM for read 'EAS112_32:8:89:254:332': 0 -> 1
[bam_fillmd1] different NM for read 'B7_597:7:103:731:697': 0 -> 2
[bam_fillmd1] different NM for read 'EAS139_11:2:71:83:58': 0 -> 2
[bam_fillmd1] different NM for read 'EAS192_3:4:63:5:870': 0 -> 2
[bam_fillmd1] different NM for read 'EAS139_19:2:29:1822:1881': 0 -> 2
[bam_fillmd1] different NM for read 'EAS188_7:3:15:568:42': 2 -> 1
[bam_fillmd1] different NM for read 'EAS1_95:4:176:971:874': 0 -> 1
[bam_fillmd1] different NM for read 'EAS1_99:1:34:649:318': 3 -> 4
[bam_fillmd1] different NM for read 'EAS54_65:4:61:346:384': 3 -> 4
[bam_fillmd1] different NM for read 'B7_597:6:20:592:496': 0 -> 1
[bam_fillmd1] different NM for read 'B7_597:4:38:999:463': 2 -> 1
[bam_fillmd1] different NM for read 'EAS114_28:5:23:944:377': 0 -> 3
[bam_fillmd1] different NM for read 'EAS219_1:3:90:219:528': 0 -> 3
[bam_fillmd1] different NM for read 'EAS1_108:5:89:942:84': 0 -> 4
[bam_fillmd1] different NM for read 'EAS1_108:6:159:493:275': 0 -> 5
[bam_fillmd1] different NM for read 'EAS139_11:1:81:1019:558': 0 -> 5
[bam_fillmd1] different NM for read 'EAS51_62:7:162:195:761': 0 -> 4
[bam_fillmd1] different NM for read 'B7_597:3:115:646:430': 0 -> 4
[bam_fillmd1] different NM for read 'EAS114_30:6:243:209:110': 0 -> 4
[bam_fillmd1] different NM for read 'EAS1_108:2:266:994:429': 0 -> 4
[bam_fillmd1] different NM for read 'EAS114_30:5:32:461:154': 0 -> 4
[bam_fillmd1] different NM for read 'EAS114_39:6:7:492:1088': 0 -> 4
[bam_fillmd1] different NM for read 'EAS1_95:6:174:650:125': 0 -> 4
[bam_fillmd1] different NM for read 'EAS56_59:6:89:457:591': 1 -> 5
[bam_fillmd1] different NM for read 'EAS114_39:2:38:670:564': 0 -> 4
[bam_fillmd1] different NM for read 'EAS188_7:4:92:693:228': 1 -> 6
[bam_fillmd1] different NM for read 'EAS218_1:4:61:1369:440': 0 -> 4
[bam_fillmd1] different NM for read 'EAS114_26:4:123:1001:580': 0 -> 4
[bam_fillmd1] different NM for read 'EAS114_39:4:10:1312:1558': 0 -> 4
[bam_fillmd1] different NM for read 'EAS220_1:8:45:178:1321': 0 -> 4
[bam_fillmd1] different NM for read 'EAS56_59:5:125:137:58': 0 -> 4
[bam_fillmd1] different NM for read 'EAS192_3:3:285:349:797': 1 -> 5
[bam_fillmd1] different NM for read 'EAS114_45:5:56:1757:1319': 0 -> 4
[bam_fillmd1] different NM for read 'B7_591:3:291:404:199': 0 -> 4
[bam_fillmd1] different NM for read 'EAS54_65:7:159:253:353': 0 -> 4
[bam_fillmd1] different NM for read 'EAS56_57:1:122:38:103': 0 -> 4
[bam_fillmd1] different NM for read 'EAS188_4:5:103:870:105': 0 -> 4
[bam_fillmd1] different NM for read 'EAS1_105:8:24:718:322': 3 -> 7
[bam_fillmd1] different NM for read 'EAS51_64:6:118:41:489': 0 -> 4
[bam_fillmd1] different NM for read 'EAS56_61:3:165:665:220': 0 -> 4
[bam_fillmd1] different NM for read 'EAS114_30:6:238:803:383': 0 -> 4
[bam_fillmd1] different NM for read 'EAS1_105:3:232:364:583': 0 -> 3
[bam_fillmd1] different NM for read 'B7_595:2:29:729:70': 3 -> 4
[bam_fillmd1] different NM for read 'EAS114_30:6:220:809:850': 4 -> 6
[bam_fillmd1] different NM for read 'EAS54_65:2:264:157:150': 3 -> 5
[bam_fillmd1] different NM for read 'B7_595:8:26:242:35': 2 -> 1
[bam_fillmd1] different NM for read 'B7_610:7:34:144:868': 4 -> 5
[bam_fillmd1] different NM for read 'B7_597:8:147:360:141': 1 -> 2
[bam_fillmd1] different NM for read 'EAS139_19:2:82:154:1333': 0 -> 4
[bam_fillmd1] different NM for read 'EAS56_63:3:41:468:459': 0 -> 3
[bam_fillmd1] different NM for read 'EAS1_97:4:274:287:423': 0 -> 1
[bam_fillmd1] different NM for read 'EAS114_30:2:303:428:326': 0 -> 1
[bam_fillmd1] different NM for read 'EAS54_71:8:105:854:975': 0 -> 3
gunzip < with_md.sam.gz > with_md.sam
samtools view --no-PG -bo with_md.bam with_md.sam
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
samtools index with_md.bam
samtools view --no-PG -bu -o uncompressed.bam ex2.sam
samtools view --no-PG -bo MM-chebi.bam MM-chebi.sam
samtools view --no-PG -bo MM-double.bam MM-double.sam
samtools view --no-PG -bo MM-explicit.bam MM-explicit.sam
samtools view --no-PG -bo MM-multi.bam MM-multi.sam
samtools view --no-PG -bo MM-orient.bam MM-orient.sam
samtools view --no-PG -bo ex10.bam ex10.sam
samtools view --no-PG -bo ex3.bam ex3.sam
samtools view --no-PG -bo ex4.bam ex4.sam
samtools view --no-PG -bo ex5.bam ex5.sam
samtools view --no-PG -bo ex6.bam ex6.sam
samtools view --no-PG -bo ex8.bam ex8.sam
samtools view --no-PG -bo ex9_fail.bam ex9_fail.sam
samtools view --no-PG -bo ex9_nofail.bam ex9_nofail.sam
samtools view --no-PG -bo ex_spliced.bam ex_spliced.sam
samtools view --no-PG -bo example_aligned_pairs.bam example_aligned_pairs.sam
samtools view --no-PG -bo example_btag.bam example_btag.sam
samtools view --no-PG -bo example_dash_in_chr.bam example_dash_in_chr.sam
samtools view --no-PG -bo example_empty_header.bam example_empty_header.sam
samtools view --no-PG -bo example_empty_with_header.bam example_empty_with_header.sam
samtools view --no-PG -bo example_reverse_complement.bam example_reverse_complement.sam
touch tmp.list
samtools view --no-PG -bo example_unmapped_reads_no_sq.bam -t tmp.list example_unmapped_reads_no_sq.sam
rm -f tmp.list
samtools view --no-PG -bo issue100.bam issue100.sam
samtools view --no-PG -bo rg_with_tab.bam rg_with_tab.sam
samtools view --no-PG -bo softclip.bam softclip.sam
samtools view --no-PG -bo tag_bug.bam tag_bug.sam
samtools view --no-PG -bo test_mapped_unmapped.bam test_mapped_unmapped.sam
samtools view --no-PG -bo test_query_position.bam test_query_position.sam
samtools view --no-PG -bo test_unaligned.bam test_unaligned.sam
samtools index MM-chebi.bam
samtools index MM-double.bam
samtools index MM-explicit.bam
samtools index MM-multi.bam
samtools index MM-orient.bam
samtools index ex10.bam
samtools index ex3.bam
samtools index ex4.bam
samtools index ex5.bam
samtools index ex6.bam
samtools index ex8.bam
samtools index ex9_fail.bam
samtools index ex9_nofail.bam
samtools index ex_spliced.bam
samtools index example_aligned_pairs.bam
samtools index example_btag.bam
samtools index example_dash_in_chr.bam
samtools index example_empty_header.bam
samtools index example_empty_with_header.bam
samtools index example_reverse_complement.bam
samtools index example_unmapped_reads_no_sq.bam
samtools index issue100.bam
samtools index rg_with_tab.bam
samtools index softclip.bam
samtools index tag_bug.bam
samtools index test_mapped_unmapped.bam
samtools index test_query_position.bam
samtools index test_unaligned.bam
samtools view --no-PG -Co ex1.cram -T ex1.fa ex1.sam
samtools view --no-PG -Co ex2.cram -T ex1.fa ex2.sam
samtools view --no-PG -Co ex3.cram -T ex1.fa ex3.sam
samtools index ex1.cram
samtools index ex2.cram
samtools index ex3.cram
cp ex1.bam example_bai.bam
samtools index example_bai.bam
mv example_bai.bam.bai example_bai.bai
dd if=ex2.bam of=ex2_truncated.bam bs=$((`wc -c < ex2.bam`-512)) count=1
1+0 records in
1+0 records out
122288 bytes (122 kB, 119 KiB) copied, 0.000348202 s, 351 MB/s
(bgzip -d < ex2.bam; printf '\37\0\0\0\1\0\0\0') | bgzip > ex2_corrupt.bam
grep "^@" ex2.sam | samtools view --no-PG -bo empty.bam -
samtools index empty.bam
cp ex1.bam explicit_index.bam
cp ex1.cram explicit_index.cram
gzip < faidx_empty_seq.fq > faidx_empty_seq.fq.gz
bgzip < ex1.fa > ex1.fa.gz
samtools faidx ex1.fa.gz
cp ex1.bam ex1_csi.bam
samtools index -c ex1_csi.bam
touch all.stamp
rm with_md.sam
make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data'
cd tests/cbcf_data && /usr/bin/make all
make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data'
bgzip < example_vcf40.vcf > example_vcf40.vcf.gz
tabix -f -p vcf example_vcf40.vcf.gz    # create tbi index
bcftools index -f example_vcf40.vcf.gz  # create csi index
bgzip < example_vcf42.vcf > example_vcf42.vcf.gz
tabix -f -p vcf example_vcf42.vcf.gz    # create tbi index
bcftools index -f example_vcf42.vcf.gz  # create csi index
bgzip < example_vcf42_only_header.vcf > example_vcf42_only_header.vcf.gz
tabix -f -p vcf example_vcf42_only_header.vcf.gz    # create tbi index
bcftools index -f example_vcf42_only_header.vcf.gz  # create csi index
bgzip < example_vcf42_withcontigs.vcf > example_vcf42_withcontigs.vcf.gz
tabix -f -p vcf example_vcf42_withcontigs.vcf.gz    # create tbi index
bcftools index -f example_vcf42_withcontigs.vcf.gz  # create csi index
bgzip < example_vcf43.vcf > example_vcf43.vcf.gz
tabix -f -p vcf example_vcf43.vcf.gz    # create tbi index
bcftools index -f example_vcf43.vcf.gz  # create csi index
bgzip < example_vcf43_with_utf8.vcf > example_vcf43_with_utf8.vcf.gz
tabix -f -p vcf example_vcf43_with_utf8.vcf.gz    # create tbi index
bcftools index -f example_vcf43_with_utf8.vcf.gz  # create csi index
bgzip < gnomad.vcf > gnomad.vcf.gz
tabix -f -p vcf gnomad.vcf.gz    # create tbi index
bcftools index -f gnomad.vcf.gz  # create csi index
bgzip < gnomad_fixed.vcf > gnomad_fixed.vcf.gz
tabix -f -p vcf gnomad_fixed.vcf.gz    # create tbi index
bcftools index -f gnomad_fixed.vcf.gz  # create csi index
bgzip < missing_genotypes.vcf > missing_genotypes.vcf.gz
tabix -f -p vcf missing_genotypes.vcf.gz    # create tbi index
bcftools index -f missing_genotypes.vcf.gz  # create csi index
bcftools view -O b example_vcf40.vcf.gz -o example_vcf40.bcf
bcftools index -f example_vcf40.bcf
bcftools view -O b example_vcf42.vcf.gz -o example_vcf42.bcf
bcftools index -f example_vcf42.bcf
bcftools view -O b example_vcf42_only_header.vcf.gz -o example_vcf42_only_header.bcf
bcftools index -f example_vcf42_only_header.bcf
bcftools view -O b example_vcf42_withcontigs.vcf.gz -o example_vcf42_withcontigs.bcf
bcftools index -f example_vcf42_withcontigs.bcf
bcftools view -O b example_vcf43.vcf.gz -o example_vcf43.bcf
bcftools index -f example_vcf43.bcf
bcftools view -O b example_vcf43_with_utf8.vcf.gz -o example_vcf43_with_utf8.bcf
bcftools index -f example_vcf43_with_utf8.bcf
bcftools view -O b gnomad.vcf.gz -o gnomad.bcf
bcftools index -f gnomad.bcf
bcftools view -O b gnomad_fixed.vcf.gz -o gnomad_fixed.bcf
[W::bcf_hdr_check_sanity] PL should be declared as Number=G
bcftools index -f gnomad_fixed.bcf
[W::bcf_hdr_check_sanity] PL should be declared as Number=G
bcftools view -O b missing_genotypes.vcf.gz -o missing_genotypes.bcf
bcftools index -f missing_genotypes.bcf
touch all.stamp
make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data'
dh_auto_test
I: pybuild base:311: cd /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build; python3.13 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13
cachedir: .pytest_cache
rootdir: /build/reproducible-path/python-pysam-0.23.0+ds
configfile: setup.cfg
plugins: typeguard-4.4.2
collecting ... collected 960 items / 1 skipped

tests/AlignedSegment_test.py::TestAlignedSegment::testBlocks PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testCompare PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testEmpty PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testFullReferencePositions PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testHashing PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testLargeRead PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testNoSequence PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testPositions PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testSettingTagInEmptyRead PASSED
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tests/AlignedSegment_test.py::TestTidMapping::test_unmapped_tid_is_asterisk_in_output PASSED
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tests/AlignedSegment_test.py::TestCigar::testCigar PASSED
tests/AlignedSegment_test.py::TestCigar::testCigarString PASSED
tests/AlignedSegment_test.py::TestCigarStats::testStats PASSED
tests/AlignedSegment_test.py::TestAlignedPairs::testReferenceBases PASSED
tests/AlignedSegment_test.py::TestBaseModifications::testChebi PASSED
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tests/AlignedSegment_test.py::TestBaseModifications::testExplicit PASSED
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tests/AlignedSegment_test.py::TestTags::testAddTags PASSED
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tests/AlignedSegment_test.py::TestTags::testMDTagMatchOnly PASSED
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tests/AlignedSegment_test.py::TestTags::testNegativeIntegers PASSED
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tests/AlignedSegment_test.py::TestTags::testTagParsing PASSED
tests/AlignedSegment_test.py::TestTags::testTagsUpdatingFloat PASSED
tests/AlignedSegment_test.py::TestCopy::testCopy PASSED
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tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_typecode PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_value_type PASSED
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tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_typecode PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_value_type PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_invalid_value_type PASSED
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tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_i PASSED
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tests/AlignedSegment_test.py::TestEnums::test_cigar_enums_are_defined PASSED
tests/AlignedSegment_test.py::TestEnums::test_sam_flags_are_defined PASSED
tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_constructed_without_header PASSED
tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_written_to_file PASSED
tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_id_can_be_set PASSED
tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_name_is_not_available PASSED
tests/AlignedSegment_test.py::TestForwardStrandValues::test_qualities_are_complemented PASSED
tests/AlignedSegment_test.py::TestForwardStrandValues::test_sequence_is_complemented PASSED
tests/AlignedSegment_test.py::TestExportImport::test_dict_export PASSED
tests/AlignedSegment_test.py::TestExportImport::test_string_export PASSED
tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_with_tags PASSED
tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_without_tags PASSED
tests/AlignedSegment_test.py::TestExportImport::test_to_string_without_alignment_file PASSED
tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_dict PASSED
tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_header PASSED
tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references PASSED
tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references_without_text PASSED
tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_text PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_access_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_contains_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_get_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_keys_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_len_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_setting_raises_error PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_values_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_header_content_is_as_expected PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_name_mapping PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_text_access_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_access_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_contains_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_get_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_keys_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_len_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_setting_raises_error PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_values_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_header_content_is_as_expected PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_name_mapping PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_text_access_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_access_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_contains_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_get_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_keys_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_len_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_setting_raises_error PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_values_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_header_content_is_as_expected PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_name_mapping PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_text_access_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_BAM PASSED
tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_CRAM [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_5dwg7gxw'
PASSED
tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_SAM PASSED
tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_BAM PASSED
tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_CRAM [W::sanitise_SQ_lines] Header @SQ length mismatch for ref chr1, 2147483647 vs 1575
[E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_37d_uv76'
PASSED
tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_SAM PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_all_stepper PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_ignore_overlaps PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_base_quality_threshold PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_ignore_orphans PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_mapping_quality_threshold PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_redo_baq PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_all_stepper PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_ignore_overlaps PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_base_quality_threshold PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_ignore_orphans PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_mapping_quality_threshold PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_redo_baq PASSED
tests/AlignmentFilePileup_test.py::TestPileupQueryPosition::testPileup PASSED
tests/AlignmentFilePileup_test.py::TestPileupObjects::testIteratorOutOfScope SKIPPED
tests/AlignmentFilePileup_test.py::TestPileupObjects::testPileupColumn PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testInverse PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateAll PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIteratePerContig PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateRanges PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateTruncate PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testAccessOnClosedIterator PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStart PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStr PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testTruncate PASSED
tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_depths_are_equal PASSED
tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_mapping_qualities_are_equal PASSED
tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_with_reference_are_equal PASSED
tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_without_reference_are_equal PASSED
tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_are_equal PASSED
tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_from_pileups_are_equal PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqqual PASSED
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tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARquery PASSED
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tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testOpt PASSED
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tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPresentOptionalFields PASSED
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tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARflag PASSED
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tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testTags PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testTags PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testTags PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testTags PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testTags PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testTags PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testTags PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testRaises PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testTags PASSED
tests/AlignmentFile_test.py::TestIO::testBAM2BAM PASSED
tests/AlignmentFile_test.py::TestIO::testBAM2SAM PASSED
tests/AlignmentFile_test.py::TestIO::testBAMWithCSIIndex PASSED
tests/AlignmentFile_test.py::TestIO::testBAMWithShortBAI PASSED
tests/AlignmentFile_test.py::TestIO::testBAMWithoutAlignedSegments PASSED
tests/AlignmentFile_test.py::TestIO::testCRAM2BAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestIO::testCRAM2CRAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestIO::testCRAM2SAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestIO::testEmptyBAM PASSED
tests/AlignmentFile_test.py::TestIO::testEmptyWithHeaderBAM PASSED
tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFile PASSED
tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFileObject PASSED
tests/AlignmentFile_test.py::TestIO::testHead PASSED
tests/AlignmentFile_test.py::TestIO::testOpenFromFilename PASSED
tests/AlignmentFile_test.py::TestIO::testReadBamWithoutTargetNames PASSED
tests/AlignmentFile_test.py::TestIO::testReadSamWithoutTargetNames PASSED
tests/AlignmentFile_test.py::TestIO::testReadingFromFileWithoutIndex PASSED
tests/AlignmentFile_test.py::TestIO::testSAM2BAM PASSED
tests/AlignmentFile_test.py::TestIO::testSAM2CRAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestIO::testSAM2SAM PASSED
tests/AlignmentFile_test.py::TestIO::testSAM2SAMWithoutHeader PASSED
tests/AlignmentFile_test.py::TestIO::testWriteUncompressedBAMFile PASSED
tests/AlignmentFile_test.py::TestIO::test_accessing_attributes_in_closed_file_raises_errors PASSED
tests/AlignmentFile_test.py::TestIO::test_fail_read_sam_without_header PASSED
tests/AlignmentFile_test.py::TestIO::test_fail_when_reading_unformatted_files PASSED
tests/AlignmentFile_test.py::TestIO::test_fetch_by_tid PASSED
tests/AlignmentFile_test.py::TestIO::test_header_available_after_closing_file PASSED
tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_with_header_without_header_check PASSED
tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_without_header_with_refs PASSED
tests/AlignmentFile_test.py::TestIO::test_reference_name_available_after_closing_file PASSED
tests/AlignmentFile_test.py::TestIO::test_write_bam_to_unknown_path_fails [E::hts_open_format] Failed to open file "missing_directory/new_file.bam" : No such file or directory
PASSED
tests/AlignmentFile_test.py::TestAutoDetect::testBAM PASSED
tests/AlignmentFile_test.py::TestAutoDetect::testCRAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestAutoDetect::testSAM PASSED
tests/AlignmentFile_test.py::TestIteratorRowBAM::testIteratePerContig PASSED
tests/AlignmentFile_test.py::TestIteratorRowBAM::testIterateRanges PASSED
tests/AlignmentFile_test.py::TestIteratorRowAllBAM::testIterate PASSED
tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIteratePerContig [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIterateRanges [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIteratePerContig [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIterateRanges [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestFloatTagBug::testFloatTagBug PASSED
tests/AlignmentFile_test.py::TestLargeFieldBug::testLargeFileBug PASSED
tests/AlignmentFile_test.py::TestClipping::testClipping PASSED
tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_bam_with_until_eof_reads_unmapped_reads PASSED
tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_sam_with_until_eof_reads_unmapped_reads PASSED
tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads PASSED
tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads_by_contig PASSED
tests/AlignmentFile_test.py::TestContextManager::testManager PASSED
tests/AlignmentFile_test.py::TestMultiThread::testSingleThreadEqualsMultithread PASSED
tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderNewFormat PASSED
tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderOldFormat PASSED
tests/AlignmentFile_test.py::TestExceptions::testBadContig PASSED
tests/AlignmentFile_test.py::TestExceptions::testMeaninglessCrap PASSED
tests/AlignmentFile_test.py::TestExceptions::testMissingFile [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory
[E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory
[E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory
[E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory
PASSED
tests/AlignmentFile_test.py::TestExceptions::testOutOfRangNewFormat PASSED
tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeNewFormat PASSED
tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeOldFormat PASSED
tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeNewFormat PASSED
tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeOldFormat PASSED
tests/AlignmentFile_test.py::TestExceptions::testZeroToZero PASSED
tests/AlignmentFile_test.py::TestWrongFormat::testOpenBamAsSam PASSED
tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsBam PASSED
tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsSam PASSED
tests/AlignmentFile_test.py::TestWrongFormat::testOpenSamAsBam PASSED
tests/AlignmentFile_test.py::TestRegionParsing::test_dash_in_chr PASSED
tests/AlignmentFile_test.py::TestDeNovoConstruction::testBAMWholeFile PASSED
tests/AlignmentFile_test.py::TestDeNovoConstruction::test_pass_if_reads_binary_equal PASSED
tests/AlignmentFile_test.py::TestEmptyHeader::testEmptyHeader PASSED
tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_in_header PASSED
tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_with_null_bytes_in_header PASSED
tests/AlignmentFile_test.py::TestMismatchingHeader::testMismatchingHeader PASSED
tests/AlignmentFile_test.py::TestHeaderWithProgramOptions::testHeader PASSED
tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBam2 PASSED
tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBamIterator [W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[E::bgzf_read_block] Failed to read BGZF block data at offset 105176 expected 17578 bytes; hread returned 17094
[E::bgzf_read] Read block operation failed with error 4 after 0 of 4 bytes
PASSED
tests/AlignmentFile_test.py::TestCorruptBAM::testCorruptBamIterator PASSED
tests/AlignmentFile_test.py::TestBTagSam::testReadTags PASSED
tests/AlignmentFile_test.py::TestBTagSam::testReadWriteTags PASSED
tests/AlignmentFile_test.py::TestBTagBam::testReadTags PASSED
tests/AlignmentFile_test.py::TestBTagBam::testReadWriteTags PASSED
tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetch PASSED
tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchUntilEOF PASSED
tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionFalseTrue PASSED
tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueFalse PASSED
tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueTrue PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetch [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchUntilEOF [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionFalseTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueFalse [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetch [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchUntilEOF [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionFalseTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueFalse [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetch PASSED
tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetchAll PASSED
tests/AlignmentFile_test.py::TestRemoteFileHTTP::testView PASSED
tests/AlignmentFile_test.py::TestLargeOptValues::testBAM PASSED
tests/AlignmentFile_test.py::TestLargeOptValues::testSAM PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_counts_as_expected PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_nofilter PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_quality_filter PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_all PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_callback PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_with_coordinates_works PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_without_coordinates_fails PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_wrong_coordinates_fails PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_counting_the_same_region_works PASSED
tests/AlignmentFile_test.py::TestFindIntrons::test_all PASSED
tests/AlignmentFile_test.py::TestFindIntrons::test_first PASSED
tests/AlignmentFile_test.py::TestFindIntrons::test_total PASSED
tests/AlignmentFile_test.py::TestLogging::testFail1 PASSED
tests/AlignmentFile_test.py::TestLogging::testNoFail1 PASSED
tests/AlignmentFile_test.py::TestLogging::testNoFail2 PASSED
tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testCount PASSED
tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testIndexStats PASSED
tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testMate PASSED
tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct PASSED
tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct_per_chromosome PASSED
tests/AlignmentFile_test.py::TestSamtoolsProxy::testIndex PASSED
tests/AlignmentFile_test.py::TestSamtoolsProxy::testSort [E::hts_open_format] Failed to open file "missing_file" : No such file or directory
PASSED
tests/AlignmentFile_test.py::TestSamtoolsProxy::testView [E::hts_open_format] Failed to open file "missing_file" : No such file or directory
PASSED
tests/AlignmentFile_test.py::TestAlignmentFileIndex::testIndex PASSED
tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexBAM PASSED
tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexCRAM PASSED
tests/AlignmentFile_test.py::TestExplicitIndex::testRemoteExplicitIndexBAM PASSED
tests/AlignmentFile_test.py::TestVerbosity::testVerbosity PASSED
tests/AlignmentFile_test.py::TestSanityCheckingBAM::test_empty_read_gives_value_error PASSED
tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_bam PASSED
tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_cram SKIPPED
tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_sam PASSED
tests/StreamFiledescriptors_test.py::StreamTest::test_samtools_processing SKIPPED
tests/StreamFiledescriptors_test.py::StreamTest::test_text_processing PASSED
tests/VariantFile_test.py::TestMissingGenotypes::testVCF PASSED
tests/VariantFile_test.py::TestMissingGenotypes::testVCFGZ PASSED
tests/VariantFile_test.py::TestMissingSamples::testVCF PASSED
tests/VariantFile_test.py::TestMissingSamples::testVCFGZ PASSED
tests/VariantFile_test.py::TestMissingSamplesFixed::testVCF [W::bcf_hdr_check_sanity] PL should be declared as Number=G
PASSED
tests/VariantFile_test.py::TestMissingSamplesFixed::testVCFGZ PASSED
tests/VariantFile_test.py::TestOpening::testDetectBCF PASSED
tests/VariantFile_test.py::TestOpening::testDetectVCF [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/VariantFile_test.py::TestOpening::testDetectVCFGZ PASSED
tests/VariantFile_test.py::TestOpening::testEmptyFileVCF PASSED
tests/VariantFile_test.py::TestOpening::testEmptyFileVCFFromPath PASSED
tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZOnlyHeader PASSED
tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithIndex PASSED
tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithoutIndex PASSED
tests/VariantFile_test.py::TestOpening::testEmptyFileVCFOnlyHeader PASSED
tests/VariantFile_test.py::TestOpening::testMissingFile [E::hts_open_format] Failed to open file "missing_file.vcf" : No such file or directory
PASSED
tests/VariantFile_test.py::TestOpening::testMissingFileVCFGZ [E::hts_open_format] Failed to open file "missing_file.vcf.gz" : No such file or directory
PASSED
tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_csi_index PASSED
tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_prebuilt_csi PASSED
tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_tbi_index_will_produce_csi PASSED
tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_csi_index PASSED
tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_tbi_index PASSED
tests/VariantFile_test.py::TestHeader::testIterator PASSED
tests/VariantFile_test.py::TestHeader::testStr PASSED
tests/VariantFile_test.py::TestParsing::testAlleles PASSED
tests/VariantFile_test.py::TestParsing::testAllelesVariantTypes PASSED
tests/VariantFile_test.py::TestParsing::testAlt PASSED
tests/VariantFile_test.py::TestParsing::testChrom PASSED
tests/VariantFile_test.py::TestParsing::testChromFromPath PASSED
tests/VariantFile_test.py::TestParsing::testFilter PASSED
tests/VariantFile_test.py::TestParsing::testFormat PASSED
tests/VariantFile_test.py::TestParsing::testId PASSED
tests/VariantFile_test.py::TestParsing::testInfo PASSED
tests/VariantFile_test.py::TestParsing::testPos PASSED
tests/VariantFile_test.py::TestParsing::testQual PASSED
tests/VariantFile_test.py::TestParsing::testRef PASSED
tests/VariantFile_test.py::TestParsing::testSampleAlleleIndices PASSED
tests/VariantFile_test.py::TestParsing::testSampleAlleles PASSED
tests/VariantFile_test.py::TestParsing::testSampleFormats PASSED
tests/VariantFile_test.py::TestParsing::testStart PASSED
tests/VariantFile_test.py::TestParsing::testStop PASSED
tests/VariantFile_test.py::TestIndexFilename::testOpen PASSED
tests/VariantFile_test.py::TestConstructionVCFWithContigs::testBase PASSED
tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionFromCopy PASSED
tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithLines PASSED
tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithRecords PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testBase PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionFromCopy PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithLines PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithRecords PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testBase PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionFromCopy PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithLines PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithRecords PASSED
tests/VariantFile_test.py::TestSettingRecordValues::testBase PASSED
tests/VariantFile_test.py::TestSettingRecordValues::testGenotype [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.)
(0, 0)
PASSED
tests/VariantFile_test.py::TestSettingRecordValues::testSetQual [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/VariantFile_test.py::TestMultiThreading::testNoMultiThreadingWithIgnoreTruncation PASSED
tests/VariantFile_test.py::TestMultiThreading::testSingleThreadEqualsMultithreadResult [E::idx_find_and_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_testSingleThreadEqualsMultithreadResult_yc5ewam5.bcf'
PASSED
tests/VariantFile_test.py::TestSubsetting::testSubsetting PASSED
tests/VariantFile_test.py::TestVCFVersions::test_all_records_can_be_fetched [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/VariantFile_test.py::TestUnicode::test_record_with_unicode PASSED
tests/VariantRecord_test.py::test_ascii_annotation_can_be_added PASSED
tests/VariantRecord_test.py::test_ascii_annotation_with_variable_length_can_be_added PASSED
tests/VariantRecord_test.py::test_unicode_annotation_can_be_added PASSED
tests/VariantRecord_test.py::test_set_sample_alleles PASSED
tests/VariantRecord_test.py::test_repeated_new_record PASSED
tests/compile_test.py::test_bam SKIPPED (no pyximport)
tests/compile_test.py::test_gtf SKIPPED (no pyximport)
tests/faidx_test.py::TestFastaFile::testFetch PASSED
tests/faidx_test.py::TestFastaFile::testFetchErrors PASSED
tests/faidx_test.py::TestFastaFile::testLength PASSED
tests/faidx_test.py::TestFastaFile::testOutOfRangeAccess PASSED
tests/faidx_test.py::TestFastaFile::testSequenceLengths PASSED
tests/faidx_test.py::TestFastaFile::test_fetch_with_region_and_contig_raises_exception PASSED
tests/faidx_test.py::TestFastaFile::test_fetch_with_region_is_equivalent PASSED
tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED
tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_index_succeeds PASSED
tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_without_index_succeeds PASSED
tests/faidx_test.py::TestFastaFilePathIndex::test_raise_exception_if_index_is_missing PASSED
tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED
tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_index_succeeds PASSED
tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_without_index_succeeds PASSED
tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_raise_exception_if_index_is_missing PASSED
tests/faidx_test.py::TestFastxFileFastq::testCounts PASSED
tests/faidx_test.py::TestFastxFileFastq::testManager PASSED
tests/faidx_test.py::TestFastxFileFastq::testMissingFile PASSED
tests/faidx_test.py::TestFastxFileFastq::testSequence PASSED
tests/faidx_test.py::TestFastqFileFastq::testCounts PASSED
tests/faidx_test.py::TestFastqFileFastq::testManager PASSED
tests/faidx_test.py::TestFastqFileFastq::testMissingFile PASSED
tests/faidx_test.py::TestFastqFileFastq::testSequence PASSED
tests/faidx_test.py::TestFastxFileFasta::testCounts PASSED
tests/faidx_test.py::TestFastxFileFasta::testManager PASSED
tests/faidx_test.py::TestFastxFileFasta::testMissingFile PASSED
tests/faidx_test.py::TestFastxFileFasta::testSequence PASSED
tests/faidx_test.py::TestFastxFileFastqStream::testCounts PASSED
tests/faidx_test.py::TestFastxFileFastqStream::testManager PASSED
tests/faidx_test.py::TestFastxFileFastqStream::testMissingFile PASSED
tests/faidx_test.py::TestFastxFileFastqStream::testSequence PASSED
tests/faidx_test.py::TestFastxFileWithEmptySequence::testIteration PASSED
tests/faidx_test.py::TestRemoteFileFTP::testFTPView PASSED
tests/faidx_test.py::TestRemoteFileFTP::test_sequence_lengths_are_available PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_can_be_created_from_scratch PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_None PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_modified PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_name_is_None PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_quality_is_wrong_length PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_name_can_be_modified PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_quality_can_be_modified PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_sequence_can_be_modified PASSED
tests/faidx_test.py::TestFastqProxy::test_fastq_proxy_instantiation_raises_error PASSED
tests/linking_test.py::TestLinking::test_package_can_be_installed SKIPPED
tests/linking_test.py::TestLinkWithRpath::test_package_can_be_installed SKIPPED
tests/linking_test.py::TestLinkWithRpath::test_package_tests_pass SKIPPED
tests/linking_test.py::TestLinkWithoutRpath::test_package_can_be_installed SKIPPED
tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_fail_on_import SKIPPED
tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_pass_if_ld_library_path_set SKIPPED
tests/samtools_test.py::SamtoolsTest::testStatements PASSED
tests/samtools_test.py::SamtoolsTest::testUsage SKIPPED (skipping us...)
tests/samtools_test.py::EmptyIndexTest::testEmptyIndex PASSED
tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraArg PASSED
tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraFlag PASSED
tests/samtools_test.py::TestReturnType::testReturnValueData PASSED
tests/samtools_test.py::TestReturnType::testReturnValueString PASSED
tests/samtools_test.py::StdoutTest::testDoubleCalling PASSED
tests/samtools_test.py::StdoutTest::testSaveStdout PASSED
tests/samtools_test.py::StdoutTest::testWithRedirectedStdout PASSED
tests/samtools_test.py::StdoutTest::testWithoutRedirectedStdout PASSED
tests/samtools_test.py::PysamTest::testStatements PASSED
tests/samtools_test.py::PysamTest::testUsage SKIPPED (skipping usage...)
tests/tabix_test.py::TestIndexing::test_indexing_to_custom_location_works PASSED
tests/tabix_test.py::TestIndexing::test_indexing_with_explict_columns_works PASSED
tests/tabix_test.py::TestIndexing::test_indexing_with_lineskipping_works PASSED
tests/tabix_test.py::TestIndexing::test_indexing_with_preset_works PASSED
tests/tabix_test.py::TestCompression::testCompression PASSED
tests/tabix_test.py::TestCompression::testIndexPresetCompressed PASSED
tests/tabix_test.py::TestCompression::testIndexPresetUncompressed PASSED
tests/tabix_test.py::TestCompressionSam::testCompression PASSED
tests/tabix_test.py::TestCompressionSam::testIndexPresetCompressed PASSED
tests/tabix_test.py::TestCompressionSam::testIndexPresetUncompressed PASSED
tests/tabix_test.py::TestCompressionBed::testCompression PASSED
tests/tabix_test.py::TestCompressionBed::testIndexPresetCompressed PASSED
tests/tabix_test.py::TestCompressionBed::testIndexPresetUncompressed PASSED
tests/tabix_test.py::TestCompressionVCF::testCompression PASSED
tests/tabix_test.py::TestCompressionVCF::testIndexPresetCompressed PASSED
tests/tabix_test.py::TestCompressionVCF::testIndexPresetUncompressed PASSED
tests/tabix_test.py::TestGZFile::testAll PASSED
tests/tabix_test.py::TestIterationWithoutComments::testAll PASSED
tests/tabix_test.py::TestIterationWithoutComments::testGetContigs PASSED
tests/tabix_test.py::TestIterationWithoutComments::testHeader PASSED
tests/tabix_test.py::TestIterationWithoutComments::testInvalidIntervals PASSED
tests/tabix_test.py::TestIterationWithoutComments::testPerContig PASSED
tests/tabix_test.py::TestIterationWithoutComments::testPerContig2 PASSED
tests/tabix_test.py::TestIterationWithoutComments::testPerContigFromStart PASSED
tests/tabix_test.py::TestIterationWithoutComments::testPerContigToEnd PASSED
tests/tabix_test.py::TestIterationWithoutComments::testPerInterval PASSED
tests/tabix_test.py::TestIterationWithoutComments::testRegionStrings PASSED
tests/tabix_test.py::TestIterationWithoutComments::testReopening PASSED
tests/tabix_test.py::TestIterationWithComments::testAll PASSED
tests/tabix_test.py::TestIterationWithComments::testGetContigs PASSED
tests/tabix_test.py::TestIterationWithComments::testHeader PASSED
tests/tabix_test.py::TestIterationWithComments::testInvalidIntervals PASSED
tests/tabix_test.py::TestIterationWithComments::testPerContig PASSED
tests/tabix_test.py::TestIterationWithComments::testPerContig2 PASSED
tests/tabix_test.py::TestIterationWithComments::testPerContigFromStart PASSED
tests/tabix_test.py::TestIterationWithComments::testPerContigToEnd PASSED
tests/tabix_test.py::TestIterationWithComments::testPerInterval PASSED
tests/tabix_test.py::TestIterationWithComments::testRegionStrings PASSED
tests/tabix_test.py::TestIterationWithComments::testReopening PASSED
tests/tabix_test.py::TestIterators::testClosedFile PASSED
tests/tabix_test.py::TestIterators::testClosedFileIteration PASSED
tests/tabix_test.py::TestIterators::testIteration PASSED
tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFile PASSED
tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFileIteration PASSED
tests/tabix_test.py::TestIteratorsGenericCompressed::testIteration PASSED
tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFile PASSED
tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFileIteration PASSED
tests/tabix_test.py::TestIteratorsFileCompressed::testIteration PASSED
tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFile PASSED
tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFileIteration PASSED
tests/tabix_test.py::TestIteratorsFileUncompressed::testIteration PASSED
tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooFewFields PASSED
tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooManyFields PASSED
tests/tabix_test.py::TestBed::testRead PASSED
tests/tabix_test.py::TestBed::testWrite PASSED
tests/tabix_test.py::TestUnicode::testFromTabix PASSED
tests/tabix_test.py::TestUnicode::testFromVCF PASSED
tests/tabix_test.py::TestVCFFromTabix::testRead PASSED
tests/tabix_test.py::TestVCFFromTabix::testWrite PASSED
tests/tabix_test.py::TestVCFFromVCF::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVCF::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_18::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_18::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_18::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_18::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_2::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_2::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_2::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_2::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_3::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_3::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_3::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_3::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_16::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_16::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_16::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_16::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_5::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_5::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_5::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_5::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_22::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_22::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_22::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_22::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_24::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_24::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_24::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_24::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_issue85::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_issue85::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_issue85::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_issue85::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_15::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_15::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_15::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_15::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_20::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_20::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_20::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_20::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_4::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_4::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_4::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_4::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_10::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_10::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_10::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_10::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_12::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_12::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_12::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_12::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_11::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_11::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_11::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_11::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_23::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_23::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_23::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_23::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_13::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_13::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_13::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_13::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_7::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_7::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_7::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_7::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_8::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_8::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_8::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_8::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_6::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_6::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_6::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_6::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_9::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_9::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_9::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_9::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_21::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_21::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_21::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_21::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testParsing PASSED
tests/tabix_test.py::TestVCFFromVariantFile::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile::testParsing [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_18::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_18::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_2::testConnecting [W::bcf_hdr_check_sanity] GL should be declared as Number=G
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_2::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_3::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_3::testParsing [W::vcf_parse] Contig '1' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_16::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_16::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_5::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_5::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_22::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_22::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'refseq.name' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'refseq.positionType' is not defined in the header, assuming Type=String
[W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_24::testConnecting [E::bcf_hdr_parse_sample_line] Could not parse the "#CHROM.." line, either the fields are incorrect or spaces are present instead of tabs:
	#CHROM  POS     ID      REF     ALT     QUAL    FILTER  INFO

PASSED
tests/tabix_test.py::TestVCFFromVariantFile_24::testParsing PASSED
tests/tabix_test.py::TestVCFFromVariantFile_issue85::testConnecting [E::bcf_hdr_parse] Could not parse the header, sample line not found
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_issue85::testParsing PASSED
tests/tabix_test.py::TestVCFFromVariantFile_15::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_15::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_format_dict2] FORMAT 'GT' at 20:439104 is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_20::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_20::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0
[W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_4::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_4::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_10::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_10::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_12::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_12::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_11::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_11::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_23::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_23::testParsing [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_13::testConnecting [W::bcf_hrec_check] Invalid tag name: "1000g"
[W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR"
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_13::testParsing [W::bcf_hrec_check] Invalid tag name: "1000g"
[W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR"
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'MMLQ' is not defined in the header, assuming Type=String
[W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr17_gl000205_random' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr18' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr19' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr21' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr22' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chrUn_gl000214' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chrUn_gl000220' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chrUn_gl000225' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chrX' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_7::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_7::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_8::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_8::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_6::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_6::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'CallSetAC' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'CallSetAC2' is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_9::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_9::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_21::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_21::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0
[W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testParsing PASSED
tests/tabix_test.py::TestIndexArgument::testFetchAll PASSED
tests/tabix_test.py::TestIndexArgument::testLoadIndexWithoutTbiExtension PASSED
tests/tabix_test.py::TestBackwardsCompatibility::testBED PASSED
tests/tabix_test.py::TestBackwardsCompatibility::testBED0v23 PASSED
tests/tabix_test.py::TestBackwardsCompatibility::testBED0v26 PASSED
tests/tabix_test.py::TestBackwardsCompatibility::testEmpty PASSED
tests/tabix_test.py::TestBackwardsCompatibility::testVCF PASSED
tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v23 PASSED
tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v26 PASSED
tests/tabix_test.py::TestMultipleIterators::testDisjointIterators PASSED
tests/tabix_test.py::TestMultipleIterators::testDoubleFetch PASSED
tests/tabix_test.py::TestMultipleIterators::testJoinedIterators PASSED
tests/tabix_test.py::TestMultipleIterators::testScope PASSED
tests/tabix_test.py::TestContextManager::testManager PASSED
tests/tabix_test.py::TestMultithreadTabixFile::testMultithreadEqualsSinglethread PASSED
tests/tabixproxies_test.py::TestBED::testAssignmentToTargetList PASSED
tests/tabixproxies_test.py::TestParser::testAssignmentToTargetList PASSED
tests/tabixproxies_test.py::TestParser::testCopy PASSED
tests/tabixproxies_test.py::TestParser::testIteratorCompressed PASSED
tests/tabixproxies_test.py::TestParser::testIteratorUncompressed PASSED
tests/tabixproxies_test.py::TestParser::testRead PASSED
tests/tabixproxies_test.py::TestParser::testUnset PASSED
tests/tabixproxies_test.py::TestParser::testWrite PASSED
tests/tabixproxies_test.py::TestGTF::testAssignmentToTargetList PASSED
tests/tabixproxies_test.py::TestGTF::testCopy PASSED
tests/tabixproxies_test.py::TestGTF::testIteratorCompressed PASSED
tests/tabixproxies_test.py::TestGTF::testIteratorUncompressed PASSED
tests/tabixproxies_test.py::TestGTF::testRead PASSED
tests/tabixproxies_test.py::TestGTF::testUnset PASSED
tests/tabixproxies_test.py::TestGTF::testWrite PASSED
tests/tabixproxies_test.py::TestGTF::test_added_attribute_is_output PASSED
tests/tabixproxies_test.py::TestGTF::test_asdict_can_be_modified PASSED
tests/tabixproxies_test.py::TestGTF::test_asdict_contains_attributes PASSED
tests/tabixproxies_test.py::TestGTF::test_setAttribute_makes_changes PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_end_is_one_based PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_feature_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_fields PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_frame_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_score_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_source_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_start_is_one_based PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_strand_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGFF3::testAssignmentToTargetList PASSED
tests/tabixproxies_test.py::TestGFF3::testCopy PASSED
tests/tabixproxies_test.py::TestGFF3::testIteratorCompressed PASSED
tests/tabixproxies_test.py::TestGFF3::testIteratorUncompressed PASSED
tests/tabixproxies_test.py::TestGFF3::testRead PASSED
tests/tabixproxies_test.py::TestGFF3::testUnset PASSED
tests/tabixproxies_test.py::TestGFF3::testWrite PASSED
tests/tabixproxies_test.py::TestGFF3::test_added_attribute_is_output PASSED
tests/tabixproxies_test.py::TestGFF3::test_asdict_can_be_modified PASSED
tests/tabixproxies_test.py::TestGFF3::test_asdict_contains_attributes PASSED
tests/tabixproxies_test.py::TestGFF3::test_setAttribute_makes_changes PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_end_is_one_based PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_feature_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_fields PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_frame_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_score_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_source_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_start_is_one_based PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_strand_to_none_produces_dot PASSED
tests/test_samtools_python.py::test_idxstats_parse_split_lines PASSED
tests/test_samtools_python.py::test_bedcov_split_lines PASSED
tests/test_samtools_python.py::test_idxstats_parse PASSED
tests/test_samtools_python.py::test_bedcov PASSED

======================= 947 passed, 14 skipped in 23.75s =======================
make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam 
# pysam: cython is available - using cythonize if necessary
# pysam: htslib mode is external
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_py
copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
running egg_info
writing pysam.egg-info/PKG-INFO
writing dependency_links to pysam.egg-info/dependency_links.txt
writing top-level names to pysam.egg-info/top_level.txt
reading manifest file 'pysam.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'KNOWN_BUGS'
warning: no files found matching 'THANKS'
warning: no files found matching 'win32/*.[ch]'
warning: no files found matching 'htslib/LICENSE'
warning: no files found matching 'htslib/README'
warning: no files found matching '*.[ch]' under directory 'htslib'
warning: no previously-included files found matching 'htslib/*config*.h'
warning: no files found matching 'htslib/configure.ac'
warning: no files found matching 'htslib/m4/*.m4'
warning: no files found matching 'htslib/*.in'
warning: no files found matching 'htslib/configure'
warning: no files found matching 'htslib/config.guess'
warning: no files found matching 'htslib/config.sub'
warning: no files found matching 'htslib/version.sh'
warning: no files found matching 'htslib/Makefile'
warning: no files found matching 'htslib/*.mk'
warning: no previously-included files found matching 'htslib/config.mk'
warning: no previously-included files found matching 'htslib/htscodecs.mk'
adding license file 'COPYING'
adding license file 'AUTHORS'
writing manifest file 'pysam.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'pysam.include.samtools.lz4' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'pysam.include.samtools.lz4' to be distributed and are
        already explicitly excluding 'pysam.include.samtools.lz4' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
copying pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
running build_ext
creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension
running install_lib
creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages
creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/Pileup.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/bcftools.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/config.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/samtools.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include
creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/config.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/version.py to version.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/Pileup.py to Pileup.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/bcftools.py to bcftools.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/config.py to config.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/utils.py to utils.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/samtools.py to samtools.cpython-313.pyc
running install_egg_info
Copying pysam.egg-info to /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam-0.23.0.egg-info
Skipping SOURCES.txt
running install_scripts
   debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds'
cd tests/pysam_data && /usr/bin/make clean
make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data'
rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \
all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \
ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \
with_md.sam.gz \
*.fq.gz
make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data'
cd tests/cbcf_data && /usr/bin/make clean
make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data'
rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf
make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data'
find . -name "*.pyc" -delete
find . -name "*.pyxbldc" -delete
find . -name "tmp_*.bam" -delete
find . -name "*.bai*" -delete
find . -name "*.cram*" -delete
find . -name "pysam_uncompressed.bam" -delete
rm -rf	tests/pysam_test_work \
	tests/example_htslib.gtf.gz.tbi \
	tests/log.txt \
	tests/test.bam \
	tests/_compile_test.c \
	tests/pysam_ex2.sam \
	tests/__pycache__ \
	pysam/calignmentfile.c \
	pysam/cbcf.c \
	tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \
	tests/pysam_data/ex1.fa.gz \
	tests/pysam_data/ex1.fa.gz.gzi \
	tests/pysam_data/ex1_csi.bam.csi
rm -rf .pytest_cache/
dh_install -Xtest.gtf.gz
find debian -name log.txt -delete
find debian -name LICENSE -delete
make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_python3 -a -O--buildsystem=pybuild
   dh_installsystemduser -a -O--buildsystem=pybuild
   dh_lintian -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_missing -a -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
dwz: debian/python3-pysam/usr/lib/python3/dist-packages/pysam/libcbcf.cpython-313-aarch64-linux-gnu.so: DWARF compression not beneficial - old size 1720989 new size 1741840
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pysam' in '../python3-pysam_0.23.0+ds-1+b1_arm64.deb'.
dpkg-deb: building package 'python3-pysam-dbgsym' in '../python3-pysam-dbgsym_0.23.0+ds-1+b1_arm64.deb'.
 dpkg-genbuildinfo --build=any -O../python-pysam_0.23.0+ds-1+b1_arm64.buildinfo
 dpkg-genchanges --build=any -O../python-pysam_0.23.0+ds-1+b1_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2025-07-15T21:30:21Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                      Tue, 15 Jul 2025 21:30:23 +0000 |
+------------------------------------------------------------------------------+


python-pysam_0.23.0+ds-1+b1_arm64.changes:
------------------------------------------

Format: 1.8
Date: Wed, 26 Feb 2025 20:35:53 +0000
Source: python-pysam (0.23.0+ds-1)
Binary: python3-pysam python3-pysam-dbgsym
Binary-Only: yes
Architecture: arm64
Version: 0.23.0+ds-1+b1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: arm Build Daemon (arm-conova-03) <buildd_arm64-arm-conova-03@buildd.debian.org>
Description:
 python3-pysam - interface for the SAM/BAM sequence alignment and mapping format (
Changes:
 python-pysam (0.23.0+ds-1+b1) sid; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for arm64; no source changes.
   * Rebuild with Python 3.13 only
Checksums-Sha1:
 24049aa65fd6f1b7d40d9d8a805ec31a77a2566c 8701 python-pysam_0.23.0+ds-1+b1_arm64.buildinfo
 2946cd41da7cac31a3e205eeee3b318d06e1d6e5 9304976 python3-pysam-dbgsym_0.23.0+ds-1+b1_arm64.deb
 1c28e1900e9b86029f1efda13930254e84ddfeca 3416700 python3-pysam_0.23.0+ds-1+b1_arm64.deb
Checksums-Sha256:
 0ffbc74aad0f9be689c0930559e4c7f9386cfa94a88d6425cead36c94d5698ed 8701 python-pysam_0.23.0+ds-1+b1_arm64.buildinfo
 ee1a820c6ccb581b7a2067d1b8bd638b4f862f1196cef2277d603dbd0811471c 9304976 python3-pysam-dbgsym_0.23.0+ds-1+b1_arm64.deb
 4e9586091a52e61c559cdd0d7f78e34c98f5453879d770ad0fe7aab4b0b1a95f 3416700 python3-pysam_0.23.0+ds-1+b1_arm64.deb
Files:
 4ecc942ae382da2918b1048a81beee56 8701 python optional python-pysam_0.23.0+ds-1+b1_arm64.buildinfo
 f58aad7b2149006e04f5ca1a8dd9e435 9304976 debug optional python3-pysam-dbgsym_0.23.0+ds-1+b1_arm64.deb
 62aba9f3f4e10847692a0290e9366ea1 3416700 python optional python3-pysam_0.23.0+ds-1+b1_arm64.deb

+------------------------------------------------------------------------------+
| Buildinfo                                    Tue, 15 Jul 2025 21:30:23 +0000 |
+------------------------------------------------------------------------------+

Format: 1.0
Source: python-pysam (0.23.0+ds-1)
Binary: python3-pysam python3-pysam-dbgsym
Architecture: arm64
Version: 0.23.0+ds-1+b1
Binary-Only-Changes:
 python-pysam (0.23.0+ds-1+b1) sid; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for arm64; no source changes.
   * Rebuild with Python 3.13 only
 .
  -- arm Build Daemon (arm-conova-03) <buildd_arm64-arm-conova-03@buildd.debian.org>  Wed, 26 Feb 2025 20:35:53 +0000
Checksums-Md5:
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Tue, 15 Jul 2025 21:30:21 +0000
Build-Path: /build/reproducible-path/python-pysam-0.23.0+ds
Installed-Build-Depends:
 autoconf (= 2.72-3),
 automake (= 1:1.17-3),
 autopoint (= 0.23.1-1),
 autotools-dev (= 20220109.1),
 base-files (= 13.6),
 base-passwd (= 3.6.6),
 bash (= 5.2.37-1.1),
 bcftools (= 1.21-1),
 binutils (= 2.44-2),
 binutils-aarch64-linux-gnu (= 2.44-2),
 binutils-common (= 2.44-2),
 bsdextrautils (= 2.40.4-5),
 bsdutils (= 1:2.40.4-5),
 build-essential (= 12.12),
 bzip2 (= 1.0.8-6),
 comerr-dev (= 2.1-1.47.2-1),
 coreutils (= 9.5-1+b1),
 cpp (= 4:14.2.0-1),
 cpp-14 (= 14.2.0-17),
 cpp-14-aarch64-linux-gnu (= 14.2.0-17),
 cpp-aarch64-linux-gnu (= 4:14.2.0-1),
 cython3 (= 3.0.11+dfsg-2),
 dash (= 0.5.12-12),
 debconf (= 1.5.89),
 debhelper (= 13.24.1),
 debianutils (= 5.21),
 dh-autoreconf (= 20),
 dh-python (= 6.20250108),
 dh-strip-nondeterminism (= 1.14.1-2),
 diffutils (= 1:3.10-2),
 dpkg (= 1.22.15),
 dpkg-dev (= 1.22.15),
 dwz (= 0.15-1+b1),
 file (= 1:5.45-3+b1),
 findutils (= 4.10.0-3),
 g++ (= 4:14.2.0-1),
 g++-14 (= 14.2.0-17),
 g++-14-aarch64-linux-gnu (= 14.2.0-17),
 g++-aarch64-linux-gnu (= 4:14.2.0-1),
 gcc (= 4:14.2.0-1),
 gcc-14 (= 14.2.0-17),
 gcc-14-aarch64-linux-gnu (= 14.2.0-17),
 gcc-14-base (= 14.2.0-17),
 gcc-aarch64-linux-gnu (= 4:14.2.0-1),
 gettext (= 0.23.1-1),
 gettext-base (= 0.23.1-1),
 grep (= 3.11-4+b1),
 groff-base (= 1.23.0-7),
 gzip (= 1.13-1),
 hostname (= 3.25),
 init-system-helpers (= 1.68),
 intltool-debian (= 0.35.0+20060710.6),
 krb5-multidev (= 1.21.3-4),
 libacl1 (= 2.3.2-2+b1),
 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 14.2.0-17),
 libatomic1 (= 14.2.0-17),
 libattr1 (= 1:2.5.2-3),
 libaudit-common (= 1:4.0.2-2),
 libaudit1 (= 1:4.0.2-2+b1),
 libbinutils (= 2.44-2),
 libblkid1 (= 2.40.4-5),
 libbrotli-dev (= 1.1.0-2+b6),
 libbrotli1 (= 1.1.0-2+b6),
 libbz2-1.0 (= 1.0.8-6),
 libbz2-dev (= 1.0.8-6),
 libc-bin (= 2.40-7),
 libc-dev-bin (= 2.40-7),
 libc6 (= 2.40-7),
 libc6-dev (= 2.40-7),
 libcap-ng0 (= 0.8.5-4),
 libcap2 (= 1:2.73-4),
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 libexpat1-dev (= 2.6.4-1),
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 libhts3t64 (= 1.21+ds-1),
 libhtscodecs2 (= 1.6.1-2),
 libhwasan0 (= 14.2.0-17),
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 libidn2-0 (= 2.3.7-2+b1),
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 libisl23 (= 0.27-1),
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 libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
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 libkrb5-dev (= 1.21.3-4),
 libkrb5support0 (= 1.21.3-4),
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 liblsan0 (= 14.2.0-17),
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 libmd0 (= 1.1.0-2+b1),
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 libnghttp2-dev (= 1.64.0-1),
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 libngtcp2-16 (= 1.9.1-1),
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 libngtcp2-dev (= 1.9.1-1),
 libp11-kit-dev (= 0.25.5-3),
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 libpam-modules (= 1.7.0-3),
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 libsasl2-2 (= 2.1.28+dfsg1-8+b1),
 libsasl2-modules-db (= 2.1.28+dfsg1-8+b1),
 libseccomp2 (= 2.5.5-2),
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 libsframe1 (= 2.44-2),
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 libsqlite3-0 (= 3.46.1-1),
 libssh2-1-dev (= 1.11.1-1),
 libssh2-1t64 (= 1.11.1-1),
 libssl-dev (= 3.4.1-1),
 libssl3t64 (= 3.4.1-1),
 libstdc++-14-dev (= 14.2.0-17),
 libstdc++6 (= 14.2.0-17),
 libsystemd0 (= 257.3-1),
 libtasn1-6 (= 4.20.0-2),
 libtasn1-6-dev (= 4.20.0-2),
 libtinfo6 (= 6.5+20250216-1),
 libtool (= 2.5.4-3),
 libtsan2 (= 14.2.0-17),
 libubsan1 (= 14.2.0-17),
 libuchardet0 (= 0.0.8-1+b2),
 libudev1 (= 257.3-1),
 libunbound8 (= 1.22.0-1+b1),
 libunistring5 (= 1.3-1),
 libuuid1 (= 2.40.4-5),
 libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1),
 libzstd-dev (= 1.5.6+dfsg-2),
 libzstd1 (= 1.5.6+dfsg-2),
 linux-libc-dev (= 6.12.16-1),
 m4 (= 1.4.19-5),
 make (= 4.4.1-1),
 man-db (= 2.13.0-1),
 mawk (= 1.3.4.20250131-1),
 media-types (= 12.0.0),
 ncurses-base (= 6.5+20250216-1),
 ncurses-bin (= 6.5+20250216-1),
 netbase (= 6.4),
 nettle-dev (= 3.10.1-1),
 openssl-provider-legacy (= 3.4.1-1),
 patch (= 2.7.6-7+b1),
 perl (= 5.40.1-2),
 perl-base (= 5.40.1-2),
 perl-modules-5.40 (= 5.40.1-2),
 pkgconf (= 1.8.1-4),
 pkgconf-bin (= 1.8.1-4),
 po-debconf (= 1.0.21+nmu1),
 python3 (= 3.13.2-1),
 python3-all (= 3.13.2-1),
 python3-all-dev (= 3.13.2-1),
 python3-autocommand (= 2.2.2-3),
 python3-dev (= 3.13.2-1),
 python3-inflect (= 7.3.1-2),
 python3-iniconfig (= 1.1.1-2),
 python3-jaraco.context (= 6.0.0-1),
 python3-jaraco.functools (= 4.1.0-1),
 python3-jaraco.text (= 4.0.0-1),
 python3-minimal (= 3.13.2-1),
 python3-more-itertools (= 10.6.0-1),
 python3-packaging (= 24.2-1),
 python3-pkg-resources (= 75.8.0-1),
 python3-pluggy (= 1.5.0-1),
 python3-pytest (= 8.3.4-1),
 python3-setuptools (= 75.8.0-1),
 python3-typeguard (= 4.4.2-1),
 python3-typing-extensions (= 4.12.2-2),
 python3-zipp (= 3.21.0-1),
 python3.13 (= 3.13.2-1),
 python3.13-dev (= 3.13.2-1),
 python3.13-minimal (= 3.13.2-1),
 readline-common (= 8.2-6),
 rpcsvc-proto (= 1.4.3-1+b1),
 samtools (= 1.21-1),
 sed (= 4.9-2+b1),
 sensible-utils (= 0.0.24),
 sysvinit-utils (= 3.14-1),
 tabix (= 1.21+ds-1),
 tar (= 1.35+dfsg-3.1),
 tzdata (= 2025a-2),
 util-linux (= 2.40.4-5),
 xz-utils (= 5.6.3-1+b1),
 zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1),
 zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
 DEB_BUILD_OPTIONS="parallel=8"
 LANG="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 SOURCE_DATE_EPOCH="1740602153"


+------------------------------------------------------------------------------+
| Package contents                             Tue, 15 Jul 2025 21:30:24 +0000 |
+------------------------------------------------------------------------------+


python3-pysam-dbgsym_0.23.0+ds-1+b1_arm64.deb
---------------------------------------------

 new Debian package, version 2.0.
 size 9304976 bytes: control archive=1220 bytes.
     914 bytes,    12 lines      control
    1469 bytes,    14 lines      md5sums
 Package: python3-pysam-dbgsym
 Source: python-pysam (0.23.0+ds-1)
 Version: 0.23.0+ds-1+b1
 Auto-Built-Package: debug-symbols
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 9844
 Depends: python3-pysam (= 0.23.0+ds-1+b1)
 Section: debug
 Priority: optional
 Description: debug symbols for python3-pysam
 Build-Ids: 00987b12af8f63bd475545615cdc1876e3b06dc4 0883264eb4ca1907b58c86858d66dd50b6a5004b 1e09dfd77b9850b4e57844d16af9e54d452c8a86 1fc9559e15ba12142e6e672e3d1ac6c54a5fa702 29d58d47921aa90965f017a353221ff2f0edf6c2 58de3ba99a903d2d6d61b1198c3188e2e0a5138e 680507686a18f42635602639a3724dcffaa47cee 70ac8afc8038e658f158c9e3604db01d8e30caf3 70ad37c632b77544dae6a0a666f35b9545c7d7e3 8bb47a6a1108a71d2236ca3a768c6b10cc55ec57 9e1974fc57ced14cad2991ad4e2df4cba3de8fc0 a3e87e7a8895d28f0bf2f467beefb252ca53e70e b574fca8b85677d0a0f91e511c2eed34e6efe500

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drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/lib/debug/
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drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/lib/debug/.build-id/68/
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drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/lib/debug/.build-id/a3/
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drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/lib/debug/.build-id/b5/
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drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/lib/debug/.dwz/aarch64-linux-gnu/
-rw-r--r-- root/root     38552 2025-02-26 20:35 ./usr/lib/debug/.dwz/aarch64-linux-gnu/python3-pysam.debug
drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/share/
drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/share/doc/
lrwxrwxrwx root/root         0 2025-02-26 20:35 ./usr/share/doc/python3-pysam-dbgsym -> python3-pysam


python3-pysam_0.23.0+ds-1+b1_arm64.deb
--------------------------------------

 new Debian package, version 2.0.
 size 3416700 bytes: control archive=9280 bytes.
     714 bytes,    16 lines      control
   35382 bytes,   361 lines      md5sums
     273 bytes,    12 lines   *  postinst             #!/bin/sh
     386 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-pysam
 Source: python-pysam (0.23.0+ds-1)
 Version: 0.23.0+ds-1+b1
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 35020
 Depends: libc6 (>= 2.38), libhts3t64 (>= 1.21), zlib1g (>= 1:1.1.4), python3 (<< 3.14), python3 (>= 3.13~), python3:any
 Section: python
 Priority: optional
 Homepage: https://pysam.readthedocs.org/en/latest
 Description: interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  Pysam is a Python module for reading and manipulating Samfiles. It's a
  lightweight wrapper of the samtools C-API. Pysam also includes an interface
  for tabix.
  .
  This package installs the module for Python 3.

drwxr-xr-x root/root         0 2025-02-26 20:35 ./
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drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/lib/
drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/lib/python3/
drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/lib/python3/dist-packages/pysam-0.23.0.egg-info/
-rw-r--r-- root/root      1646 2025-02-26 20:35 ./usr/lib/python3/dist-packages/pysam-0.23.0.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2025-02-26 20:35 ./usr/lib/python3/dist-packages/pysam-0.23.0.egg-info/dependency_links.txt
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drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/lib/python3/dist-packages/pysam/
-rw-r--r-- root/root      8955 2025-02-05 09:11 ./usr/lib/python3/dist-packages/pysam/Pileup.py
-rw-r--r-- root/root      3431 2025-02-05 09:11 ./usr/lib/python3/dist-packages/pysam/__init__.py
-rw-r--r-- root/root      1528 2025-02-05 09:11 ./usr/lib/python3/dist-packages/pysam/bcftools.py
-rw-r--r-- root/root       102 2025-02-05 09:11 ./usr/lib/python3/dist-packages/pysam/cbcftools_util.h
-rw-r--r-- root/root        16 2025-02-26 20:35 ./usr/lib/python3/dist-packages/pysam/config.py
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drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/share/
drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/share/doc/
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drwxr-xr-x root/root         0 2025-02-26 20:35 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       211 2024-05-12 12:22 ./usr/share/lintian/overrides/python3-pysam


+------------------------------------------------------------------------------+
| Post Build                                   Tue, 15 Jul 2025 21:30:26 +0000 |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                      Tue, 15 Jul 2025 21:30:26 +0000 |
+------------------------------------------------------------------------------+

Purging /build/reproducible-path
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                      Tue, 15 Jul 2025 21:30:29 +0000 |
+------------------------------------------------------------------------------+

Build Architecture: arm64
Build Type: any
Build-Space: 218804
Build-Time: 376
Distribution: unstable
Host Architecture: arm64
Install-Time: 6
Job: /srv/rebuilderd/tmp/rebuilderdwElp5b/inputs/python-pysam_0.23.0+ds-1.dsc
Machine Architecture: arm64
Package: python-pysam
Package-Time: 396
Source-Version: 0.23.0+ds-1
Space: 218804
Status: successful
Version: 0.23.0+ds-1+b1
--------------------------------------------------------------------------------
Finished at 2025-07-15T21:30:21Z
Build needed 00:06:36, 218804k disk space
build artifacts stored in /srv/rebuilderd/tmp/rebuilderdwElp5b/out
checking python3-pysam-dbgsym_0.23.0+ds-1+b1_arm64.deb: size... md5... sha1... sha256... all OK
checking python3-pysam_0.23.0+ds-1+b1_arm64.deb: size differs for python3-pysam_0.23.0+ds-1+b1_arm64.deb