=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdxra5ZU/inputs/sra-sdk_3.2.1+dfsg-5+b1_arm64.buildinfo Source: sra-sdk Version: 3.2.1+dfsg-5 rebuilderd-worker node: codethink02-arm64 +------------------------------------------------------------------------------+ | Downloading sources Sun, 18 Jan 2026 05:50:04 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.6 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [137 kB] Get:7 https://deb.debian.org/debian sid InRelease [187 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.1 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6552 B] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [118 kB] Get:12 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [10.5 kB] Get:15 https://deb.debian.org/debian trixie-backports/main Sources [127 kB] Get:16 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [2468 B] Get:17 https://deb.debian.org/debian forky/main Sources [10.6 MB] Get:18 https://deb.debian.org/debian forky/non-free-firmware Sources [7700 B] Get:19 https://deb.debian.org/debian sid/non-free-firmware Sources [9688 B] Get:20 https://deb.debian.org/debian sid/main Sources [11.2 MB] Get:21 https://deb.debian.org/debian experimental/main Sources [390 kB] Get:22 https://deb.debian.org/debian experimental/non-free-firmware Sources [3180 B] Fetched 33.8 MB in 3s (11.5 MB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/s/sra-sdk/sra-sdk_3.2.1%2bdfsg-5.dsc' sra-sdk_3.2.1+dfsg-5.dsc 3003 SHA256:e90f2e3f614aeb1600026e84cf6c744725b85c41fdaf1dd2abdaf60d8da1b140 'https://deb.debian.org/debian/pool/main/s/sra-sdk/sra-sdk_3.2.1%2bdfsg.orig.tar.xz' sra-sdk_3.2.1+dfsg.orig.tar.xz 50260680 SHA256:e8ba7358b76d7ff158a0450324901d0466a6d0e61496f1354c8da1167709f7a7 'https://deb.debian.org/debian/pool/main/s/sra-sdk/sra-sdk_3.2.1%2bdfsg-5.debian.tar.xz' sra-sdk_3.2.1+dfsg-5.debian.tar.xz 3796012 SHA256:d0c975140d0e55ceca071603643a56425ce31d69805c261b3807c2e2c8bb99e9 e8ba7358b76d7ff158a0450324901d0466a6d0e61496f1354c8da1167709f7a7 sra-sdk_3.2.1+dfsg.orig.tar.xz d0c975140d0e55ceca071603643a56425ce31d69805c261b3807c2e2c8bb99e9 sra-sdk_3.2.1+dfsg-5.debian.tar.xz e90f2e3f614aeb1600026e84cf6c744725b85c41fdaf1dd2abdaf60d8da1b140 sra-sdk_3.2.1+dfsg-5.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Sun, 18 Jan 2026 05:50:09 +0000 | +------------------------------------------------------------------------------+ + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdxra5ZU/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdxra5ZU/inputs/sra-sdk_3.2.1+dfsg-5+b1_arm64.buildinfo Rebuilding sra-sdk=3.2.1+dfsg-5 in /srv/rebuilderd/tmp/rebuilderdxra5ZU/inputs now. /srv/rebuilderd/tmp/rebuilderdxra5ZU/inputs/sra-sdk_3.2.1+dfsg-5+b1_arm64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/sra-sdk-3.2.1+dfsg I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [187 kB] Get:2 http://snapshot.debian.org/archive/debian/20260116T142445Z forky InRelease [137 kB] Get:3 http://deb.debian.org/debian unstable/main arm64 Packages [10.1 MB] Get:4 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 Packages [9574 kB] Fetched 20.0 MB in 2s (10.4 MB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20260116T142445Z/dists/forky/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main arm64 dbus-system-bus-common all 1.16.2-2 [53.5 kB] Fetched 53.5 kB in 0s (3318 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwylk0shu/dbus-system-bus-common_1.16.2-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 shared-mime-info arm64 2.4-5+b3 [755 kB] Fetched 755 kB in 0s (33.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkegtaxzy/shared-mime-info_2.4-5+b3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsensors-config all 1:3.6.2-2 [16.2 kB] Fetched 16.2 kB in 0s (986 kB/s) dpkg-name: info: moved 'libsensors-config_1%3a3.6.2-2_all.deb' to '/srv/rebuilderd/tmp/tmpu1s8qf2i/libsensors-config_3.6.2-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libfile-touch-perl all 0.12-2 [8816 B] Fetched 8816 B in 0s (556 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuavvrin5/libfile-touch-perl_0.12-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.22.1-2 [53.7 kB] Fetched 53.7 kB in 0s (3264 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptlz0ynf6/libkadm5srv-mit12_1.22.1-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpython3.14-stdlib arm64 3.14.2-1+b1 [2172 kB] Fetched 2172 kB in 0s (64.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplbrp7p4s/libpython3.14-stdlib_3.14.2-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 grep arm64 3.12-1 [440 kB] Fetched 440 kB in 0s (22.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp05r9nyly/grep_3.12-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libaudit1 arm64 1:4.1.2-1+b1 [59.7 kB] Fetched 59.7 kB in 0s (3478 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmphx62ikzo/libaudit1_4.1.2-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Fetched 125 kB in 0s (7393 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdbwa80yt/dctrl-tools_2.24-3+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.22.1-2 [127 kB] Fetched 127 kB in 0s (7575 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkm9pd40u/libgssapi-krb5-2_1.22.1-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libnghttp3-dev arm64 1.12.0-1 [91.6 kB] Fetched 91.6 kB in 0s (5606 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyqa0ym7v/libnghttp3-dev_1.12.0-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.2-1 [772 kB] Fetched 772 kB in 0s (34.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkdqfodc2/autopoint_0.23.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libgdbm6t64 arm64 1.26-1 [77.5 kB] Fetched 77.5 kB in 0s (4669 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpha44lyu_/libgdbm6t64_1.26-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libksba8 arm64 1.6.7-2+b2 [125 kB] Fetched 125 kB in 0s (7383 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0yd1nbya/libksba8_1.6.7-2+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b9 [305 kB] Fetched 305 kB in 0s (16.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk87xh9qb/libbrotli-dev_1.1.0-2+b9_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.2-1 [242 kB] Fetched 242 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgln9037s/gettext-base_0.23.2-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 liblz4-1 arm64 1.10.0-6 [66.7 kB] Fetched 66.7 kB in 0s (3993 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf241t1tz/liblz4-1_1.10.0-6_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Fetched 74.8 kB in 0s (4662 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppedsafti/readline-common_8.3-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Fetched 12.9 kB in 0s (817 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt7n08_02/libencode-locale-perl_1.05-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 d-shlibs all 0.109 [11.1 kB] Fetched 11.1 kB in 0s (708 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfd97b11o/d-shlibs_0.109_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libapt-pkg7.0 arm64 3.1.13 [1056 kB] Fetched 1056 kB in 0s (41.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp14lq8wcy/libapt-pkg7.0_3.1.13_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6+b1 [30.9 kB] Fetched 30.9 kB in 0s (1927 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp__eohfl0/libbz2-dev_1.0.8-6+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.11-3 [1426 kB] Fetched 1426 kB in 0s (52.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphu97i7um/libgnutls28-dev_3.8.11-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 sysvinit-utils arm64 3.15-6 [34.9 kB] Fetched 34.9 kB in 0s (2202 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp98ouv41y/sysvinit-utils_3.15-6_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.4-3 [479 kB] Fetched 479 kB in 0s (24.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuchithd4/libcairo2_1.18.4-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b8 [24.9 kB] Fetched 24.9 kB in 0s (1496 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5dfpkcxg/libcom-err2_1.47.2-3+b8_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxi6 arm64 2:1.8.2-2 [77.5 kB] Fetched 77.5 kB in 0s (4775 kB/s) dpkg-name: info: moved 'libxi6_2%3a1.8.2-2_arm64.deb' to '/srv/rebuilderd/tmp/tmp4z8nmx93/libxi6_1.8.2-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxcb-glx0 arm64 1.17.0-2+b2 [122 kB] Fetched 122 kB in 0s (7315 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf9nsju2s/libxcb-glx0_1.17.0-2+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libwayland-egl1 arm64 1.24.0-2+b1 [6316 B] Fetched 6316 B in 0s (402 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0qonkaqi/libwayland-egl1_1.24.0-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10.2-1 [1319 kB] Fetched 1319 kB in 0s (49.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpss5ke2y7/nettle-dev_3.10.2-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 base-files arm64 14 [72.9 kB] Fetched 72.9 kB in 0s (4408 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcecaw4_1/base-files_14_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 at-spi2-common all 2.59.0-1 [173 kB] Fetched 173 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprp10bfk5/at-spi2-common_2.59.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libatk1.0-0t64 arm64 2.59.0-1 [50.3 kB] Fetched 50.3 kB in 0s (3139 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppqruyzj7/libatk1.0-0t64_2.59.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libpcre2-8-0 arm64 10.46-1 [262 kB] Fetched 262 kB in 0s (14.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6dwjaa9u/libpcre2-8-0_10.46-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Fetched 18.0 kB in 0s (1142 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnnoclnvp/libclass-method-modifiers-perl_2.15-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.2-1 [1613 kB] Fetched 1613 kB in 0s (99.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzp6g9unt/gettext_0.23.2-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-2 [315 kB] Fetched 315 kB in 0s (17.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsrd16lh2/m4_1.4.20-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Fetched 179 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkrqkap6l/libldap2_2.6.10+dfsg-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-3+b1 [23.3 kB] Fetched 23.3 kB in 0s (1434 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb37u5tjq/libffi8_3.5.2-3+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Fetched 58.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxge0j08j/libmoo-perl_2.005005-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Fetched 840 kB in 0s (26.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp04we5xpg/fonts-dejavu-core_2.37-8_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsmartcols1 arm64 2.41.3-3 [139 kB] Fetched 139 kB in 0s (8096 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4u3b58rm/libsmartcols1_2.41.3-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Fetched 12.2 kB in 0s (777 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcb6cizch/dh-autoreconf_21_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-4 [72.2 kB] Fetched 72.2 kB in 0s (4430 kB/s) dpkg-name: info: moved 'libjpeg-dev_1%3a2.1.5-4_arm64.deb' to '/srv/rebuilderd/tmp/tmp5ntraamf/libjpeg-dev_2.1.5-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.22.1-2 [32.2 kB] Fetched 32.2 kB in 0s (1290 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxlsbi6qu/libkrb5support0_1.22.1-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.22.1-2 [56.5 kB] Fetched 56.5 kB in 0s (3470 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd063ixa_/libgssrpc4t64_1.22.1-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhdf5-dev arm64 1.14.5+repack-4 [3219 kB] Fetched 3219 kB in 0s (73.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu9tmzm_b/libhdf5-dev_1.14.5+repack-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 cpp arm64 4:15.2.0-4 [1568 B] Fetched 1568 B in 0s (104 kB/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpabvbv_ly/cpp_15.2.0-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 rpcsvc-proto arm64 1.4.3-1+b1 [60.5 kB] Fetched 60.5 kB in 0s (3726 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpybhtx_41/rpcsvc-proto_1.4.3-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1+b1 [794 kB] Fetched 794 kB in 0s (35.9 MB/s) dpkg-name: info: moved 'libx11-6_2%3a1.8.12-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpl0bo5bul/libx11-6_1.8.12-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dbus-session-bus-common all 1.16.2-2 [52.3 kB] Fetched 52.3 kB in 0s (3127 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvxjf6332/dbus-session-bus-common_1.16.2-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.29 [943 kB] Fetched 943 kB in 0s (39.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcvbimw1c/debhelper_13.29_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libstdc++6 arm64 15.2.0-12 [648 kB] Fetched 648 kB in 0s (29.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7afc0777/libstdc++6_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Fetched 12.2 kB in 0s (769 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_o3fpprd/libdynaloader-functions-perl_0.004-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgmp10 arm64 2:6.3.0+dfsg-5+b1 [544 kB] Fetched 544 kB in 0s (26.8 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpmdizk_sd/libgmp10_6.3.0+dfsg-5+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libngtcp2-dev arm64 1.16.0-1 [183 kB] Fetched 183 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp08ydxxe1/libngtcp2-dev_1.16.0-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Fetched 15.1 kB in 0s (946 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfd0f_9p7/libfile-which-perl_1.27-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxdamage1 arm64 1:1.1.6-1+b3 [15.6 kB] Fetched 15.6 kB in 0s (981 kB/s) dpkg-name: info: moved 'libxdamage1_1%3a1.1.6-1+b3_arm64.deb' to '/srv/rebuilderd/tmp/tmpxc89z6oi/libxdamage1_1.1.6-1+b3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Fetched 11.3 kB in 0s (710 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp21weu6x8/libimport-into-perl_1.002005-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsub-quote-perl all 2.006009-1 [21.3 kB] Fetched 21.3 kB in 0s (1345 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu6lt605s/libsub-quote-perl_2.006009-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libmbedtls-dev arm64 3.6.5-0.1 [821 kB] Fetched 821 kB in 0s (36.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2oe9yfbj/libmbedtls-dev_3.6.5-0.1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Fetched 96.5 kB in 0s (5794 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp1vv_7zy/libexpat1_2.7.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 binutils-common arm64 2.45.50.20251209-1 [2541 kB] Fetched 2541 kB in 0s (70.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdlbijc7s/binutils-common_2.45.50.20251209-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libblkid1 arm64 2.41.3-3 [167 kB] Fetched 167 kB in 0s (9530 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpujtx_vw4/libblkid1_2.41.3-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-4 [24.9 kB] Fetched 24.9 kB in 0s (1567 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd9g9dwbj/libhdf5-hl-cpp-310_1.14.5+repack-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-12 [19.6 MB] Fetched 19.6 MB in 0s (152 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpglrmpaae/gcc-15-aarch64-linux-gnu_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-10 [1130 kB] Fetched 1130 kB in 0s (45.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp78zn2724/groff-base_1.23.0-10_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libatomic1 arm64 15.2.0-12 [9852 B] Fetched 9852 B in 0s (622 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppz6dydn9/libatomic1_15.2.0-12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [173 kB] Fetched 173 kB in 0s (9393 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplr_gwvxn/librtmp-dev_2.4+20151223.gitfa8646d.1-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.194-1 [184 kB] Fetched 184 kB in 0s (10.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgdntmobd/libelf1t64_0.194-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.18.0-2 [373 kB] Fetched 373 kB in 0s (20.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4bt1yvh9/libcurl4t64_8.18.0-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libwayland-client0 arm64 1.24.0-2+b1 [27.5 kB] Fetched 27.5 kB in 0s (1630 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp68wlv7r/libwayland-client0_1.24.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libncbi-vdb3 arm64 3.2.1+dfsg-2 [1096 kB] Fetched 1096 kB in 0s (43.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuyawcp5k/libncbi-vdb3_3.2.1+dfsg-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsz2 arm64 1.1.4-2+b1 [8276 B] Fetched 8276 B in 0s (523 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph2wn4m2a/libsz2_1.1.4-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.8-4+b1 [102 kB] Fetched 102 kB in 0s (5948 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptocsmosw/libidn2-dev_2.3.8-4+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libctf-nobfd0 arm64 2.45.50.20251209-1 [154 kB] Fetched 154 kB in 0s (8654 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5yyjyks5/libctf-nobfd0_2.45.50.20251209-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 jarwrapper all 0.81 [9784 B] Fetched 9784 B in 0s (936 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpafp56v9y/jarwrapper_0.81_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libre2-11 arm64 20250805-1+b2 [153 kB] Fetched 153 kB in 0s (8886 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphc39avag/libre2-11_20250805-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Fetched 7507 kB in 0s (99.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8m19wrfi/libz3-4_4.13.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dpkg-dev all 1.23.3 [1318 kB] Fetched 1318 kB in 0s (48.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphd_37f81/dpkg-dev_1.23.3_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgbm1 arm64 25.3.3-1 [46.2 kB] Fetched 46.2 kB in 0s (2846 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8mwf1ift/libgbm1_25.3.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgdk-pixbuf-2.0-0 arm64 2.44.4+dfsg-1 [133 kB] Fetched 133 kB in 0s (7597 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz5zes9xa/libgdk-pixbuf-2.0-0_2.44.4+dfsg-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 tar arm64 1.35+dfsg-3.1 [802 kB] Fetched 802 kB in 0s (35.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgl10tei3/tar_1.35+dfsg-3.1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dconf-service arm64 0.49.0-4 [32.0 kB] Fetched 32.0 kB in 0s (2008 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzspmelzd/dconf-service_0.49.0-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Fetched 39.3 kB in 0s (2415 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphxk8nwqh/libtimedate-perl_2.3300-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 hicolor-icon-theme all 0.18-2 [11.8 kB] Fetched 11.8 kB in 0s (743 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmk409i3z/hicolor-icon-theme_0.18-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b3 [30.2 kB] Fetched 30.2 kB in 0s (1887 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuhq9ht3v/libjbig0_2.1-6.1+b3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Fetched 10.6 kB in 0s (676 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi80769pl/libb-hooks-op-check-perl_0.22-3+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 default-jre arm64 2:1.21-76 [1068 B] Fetched 1068 B in 0s (66.8 kB/s) dpkg-name: info: moved 'default-jre_2%3a1.21-76_arm64.deb' to '/srv/rebuilderd/tmp/tmp7h7wwdgr/default-jre_1.21-76_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 sqv arm64 1.3.0-5 [599 kB] Fetched 599 kB in 0s (28.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppeitab8v/sqv_1.3.0-5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b9 [295 kB] Fetched 295 kB in 0s (16.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcgbt9jwy/libbrotli1_1.1.0-2+b9_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgcc-s1 arm64 15.2.0-12 [53.4 kB] Fetched 53.4 kB in 0s (3202 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr9p3_suz/libgcc-s1_15.2.0-12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libisl23 arm64 0.27-1 [601 kB] Fetched 601 kB in 0s (28.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxlvac4jn/libisl23_0.27-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Fetched 55.0 kB in 0s (3378 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzk_9w9te/libsasl2-2_2.1.28+dfsg1-10_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libasound2t64 arm64 1.2.15.1-1 [347 kB] Fetched 347 kB in 0s (18.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40biw6ws/libasound2t64_1.2.15.1-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Fetched 6712 B in 0s (421 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnk4xsjn8/perl-openssl-defaults_7+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b2 [80.4 kB] Fetched 80.4 kB in 0s (4943 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj6sm0yz5/libpsl-dev_0.21.2-1.1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libsframe2 arm64 2.45.50.20251209-1 [79.7 kB] Fetched 79.7 kB in 0s (4980 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp89f6ufpi/libsframe2_2.45.50.20251209-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5+b1 [152 kB] Fetched 152 kB in 0s (8790 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprp77f3li/liblerc4_4.0.0+ds-5+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (3710 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdxnf31wr/autotools-dev_20240727.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 fontconfig arm64 2.17.1-3 [190 kB] Fetched 190 kB in 0s (10.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7rdavkv7/fontconfig_2.17.1-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gcc-15-base arm64 15.2.0-12 [54.2 kB] Fetched 54.2 kB in 0s (3344 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpizud36q5/gcc-15-base_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 mount arm64 2.41.3-3 [161 kB] Fetched 161 kB in 0s (9252 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_l70ph3o/mount_2.41.3-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4 [5288 B] Fetched 5288 B in 0s (331 kB/s) dpkg-name: info: moved 'cpp-aarch64-linux-gnu_4%3a15.2.0-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpin73k2tm/cpp-aarch64-linux-gnu_15.2.0-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 default-jdk-headless arm64 2:1.21-76 [1124 B] Fetched 1124 B in 0s (71.7 kB/s) dpkg-name: info: moved 'default-jdk-headless_2%3a1.21-76_arm64.deb' to '/srv/rebuilderd/tmp/tmpvjei6u9c/default-jdk-headless_1.21-76_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 g++ arm64 4:15.2.0-4 [1332 B] Fetched 1332 B in 0s (84.6 kB/s) dpkg-name: info: moved 'g++_4%3a15.2.0-4_arm64.deb' to '/srv/rebuilderd/tmp/tmprccot3vx/g++_15.2.0-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Fetched 56.3 kB in 0s (3420 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvkjq2h5q/librtmp1_2.4+20151223.gitfa8646d.1-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdebconfclient0 arm64 0.282+b2 [11.3 kB] Fetched 11.3 kB in 0s (702 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg4gddsqw/libdebconfclient0_0.282+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.22.1-2 [127 kB] Fetched 127 kB in 0s (7756 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp66rme_65/krb5-multidev_1.22.1-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Fetched 19.1 kB in 0s (1230 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ywjov_h/libhttp-cookies-perl_6.11-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 findutils arm64 4.10.0-3 [696 kB] Fetched 696 kB in 0s (32.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnzwoz6mj/findutils_4.10.0-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libubsan1 arm64 15.2.0-12 [1064 kB] Fetched 1064 kB in 0s (44.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4lga57oz/libubsan1_15.2.0-12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libncbi-wvdb-dev arm64 3.2.1+dfsg-2 [1269 kB] Fetched 1269 kB in 0s (47.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7i5wdpn7/libncbi-wvdb-dev_3.2.1+dfsg-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 fastjar arm64 2:0.98-7+b1 [74.9 kB] Fetched 74.9 kB in 0s (4601 kB/s) dpkg-name: info: moved 'fastjar_2%3a0.98-7+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpad51aa3f/fastjar_0.98-7+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-5 [26.7 kB] Fetched 26.7 kB in 0s (1642 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp38kp_rs8/libfribidi0_1.0.16-5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.17.1-3 [124 kB] Fetched 124 kB in 0s (7466 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0d47exls/libfontconfig1_2.17.1-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dconf-gsettings-backend arm64 0.49.0-4 [28.2 kB] Fetched 28.2 kB in 0s (1772 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp626d2u5q/dconf-gsettings-backend_0.49.0-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gpg-agent arm64 2.4.8-5 [249 kB] Fetched 249 kB in 0s (13.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe4e7pq55/gpg-agent_2.4.8-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libxshmfence1 arm64 1.3.3-1 [11.1 kB] Fetched 11.1 kB in 0s (710 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp53_hw1ec/libxshmfence1_1.3.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhdf5-cpp-310 arm64 1.14.5+repack-4 [129 kB] Fetched 129 kB in 0s (7634 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps70uggvf/libhdf5-cpp-310_1.14.5+repack-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 openjdk-21-jre arm64 21.0.10~6ea-1 [196 kB] Fetched 196 kB in 0s (11.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdw_rsrro/openjdk-21-jre_21.0.10~6ea-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.22.1-2 [41.8 kB] Fetched 41.8 kB in 0s (2550 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprsvsmdn0/libkdb5-10t64_1.22.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libc-gconv-modules-extra arm64 2.42-7 [1158 kB] Fetched 1158 kB in 0s (45.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjw88ix81/libc-gconv-modules-extra_2.42-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 xz-utils arm64 5.8.2-1 [703 kB] Fetched 703 kB in 0s (32.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpme774ze1/xz-utils_5.8.2-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Fetched 100 kB in 0s (6049 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpas8c6pbk/dwz_0.16-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9+b1 [62.4 kB] Fetched 62.4 kB in 0s (3892 kB/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-9+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmp3k01at38/libproc2-0_4.0.4-9+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Fetched 20.6 kB in 0s (1316 kB/s) dpkg-name: info: moved 'libxau6_1%3a1.0.11-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpi3qq2q4g/libxau6_1.0.11-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Fetched 10.8 kB in 0s (697 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaoxftp80/liblwp-protocol-https-perl_6.14-1_all.deb' Downloading dependency 1 of 468: dbus-system-bus-common:arm64=1.16.2-2 Downloading dependency 2 of 468: shared-mime-info:arm64=2.4-5+b3 Downloading dependency 3 of 468: libsensors-config:arm64=1:3.6.2-2 Downloading dependency 4 of 468: libfile-touch-perl:arm64=0.12-2 Downloading dependency 5 of 468: libkadm5srv-mit12:arm64=1.22.1-2 Downloading dependency 6 of 468: libpython3.14-stdlib:arm64=3.14.2-1+b1 Downloading dependency 7 of 468: grep:arm64=3.12-1 Downloading dependency 8 of 468: libaudit1:arm64=1:4.1.2-1+b1 Downloading dependency 9 of 468: dctrl-tools:arm64=2.24-3+b1 Downloading dependency 10 of 468: libgssapi-krb5-2:arm64=1.22.1-2 Downloading dependency 11 of 468: libnghttp3-dev:arm64=1.12.0-1 Downloading dependency 12 of 468: autopoint:arm64=0.23.2-1 Downloading dependency 13 of 468: libgdbm6t64:arm64=1.26-1 Downloading dependency 14 of 468: libksba8:arm64=1.6.7-2+b2 Downloading dependency 15 of 468: libbrotli-dev:arm64=1.1.0-2+b9 Downloading dependency 16 of 468: gettext-base:arm64=0.23.2-1 Downloading dependency 17 of 468: liblz4-1:arm64=1.10.0-6 Downloading dependency 18 of 468: readline-common:arm64=8.3-3 Downloading dependency 19 of 468: libencode-locale-perl:arm64=1.05-3 Downloading dependency 20 of 468: d-shlibs:arm64=0.109 Downloading dependency 21 of 468: libapt-pkg7.0:arm64=3.1.13 Downloading dependency 22 of 468: libbz2-dev:arm64=1.0.8-6+b1 Downloading dependency 23 of 468: libgnutls28-dev:arm64=3.8.11-3 Downloading dependency 24 of 468: sysvinit-utils:arm64=3.15-6 Downloading dependency 25 of 468: libcairo2:arm64=1.18.4-3 Downloading dependency 26 of 468: libcom-err2:arm64=1.47.2-3+b8 Downloading dependency 27 of 468: libxi6:arm64=2:1.8.2-2 Downloading dependency 28 of 468: libxcb-glx0:arm64=1.17.0-2+b2 Downloading dependency 29 of 468: libwayland-egl1:arm64=1.24.0-2+b1 Downloading dependency 30 of 468: nettle-dev:arm64=3.10.2-1 Downloading dependency 31 of 468: base-files:arm64=14 Downloading dependency 32 of 468: at-spi2-common:arm64=2.59.0-1 Downloading dependency 33 of 468: libatk1.0-0t64:arm64=2.59.0-1 Downloading dependency 34 of 468: libpcre2-8-0:arm64=10.46-1 Downloading dependency 35 of 468: libclass-method-modifiers-perl:arm64=2.15-1 Downloading dependency 36 of 468: gettext:arm64=0.23.2-1 Downloading dependency 37 of 468: m4:arm64=1.4.20-2 Downloading dependency 38 of 468: libldap2:arm64=2.6.10+dfsg-1 Downloading dependency 39 of 468: libffi8:arm64=3.5.2-3+b1 Downloading dependency 40 of 468: libmoo-perl:arm64=2.005005-1 Downloading dependency 41 of 468: fonts-dejavu-core:arm64=2.37-8 Downloading dependency 42 of 468: libsmartcols1:arm64=2.41.3-3 Downloading dependency 43 of 468: dh-autoreconf:arm64=21 Downloading dependency 44 of 468: libjpeg-dev:arm64=1:2.1.5-4 Downloading dependency 45 of 468: 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libidn2-dev:arm64=2.3.8-4+b1 Downloading dependency 76 of 468: libctf-nobfd0:arm64=2.45.50.20251209-1 Downloading dependency 77 of 468: jarwrapper:arm64=0.81 Downloading dependency 78 of 468: libre2-11:arm64=20250805-1+b2 Downloading dependency 79 of 468: libz3-4:arm64=4.13.3-1 Downloading dependency 80 of 468: dpkg-dev:arm64=1.23.3 Downloading dependency 81 of 468: libgbm1:arm64=25.3.3-1 Downloading dependency 82 of 468: libgdk-pixbuf-2.0-0:arm64=2.44.4+dfsg-1 Downloading dependency 83 of 468: tar:arm64=1.35+dfsg-3.1 Downloading dependency 84 of 468: dconf-service:arm64=0.49.0-4 Downloading dependency 85 of 468: libtimedate-perl:arm64=2.3300-2 Downloading dependency 86 of 468: hicolor-icon-theme:arm64=0.18-2 Downloading dependency 87 of 468: libjbig0:arm64=2.1-6.1+b3 Downloading dependency 88 of 468: libb-hooks-op-check-perl:arm64=0.22-3+b2 Downloading dependency 89 of 468: default-jre:arm64=2:1.21-76 Downloading dependency 90 of 468: sqv:arm64=1.3.0-5 Downloading dependency 91 of 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Downloading dependency 107 of 468: librtmp1:arm64=2.4+20151223.gitfa8646d.1-3 Downloading dependency 108 of 468: libdebconfclient0:arm64=0.282+b2 Downloading dependency 109 of 468: krb5-multidev:arm64=1.22.1-2 Downloading dependency 110 of 468: libhttp-cookies-perl:arm64=6.11-1 Downloading dependency 111 of 468: findutils:arm64=4.10.0-3 Downloading dependency 112 of 468: libubsan1:arm64=15.2.0-12 Downloading dependency 113 of 468: libncbi-wvdb-dev:arm64=3.2.1+dfsg-2 Downloading dependency 114 of 468: fastjar:arm64=2:0.98-7+b1 Downloading dependency 115 of 468: libfribidi0:arm64=1.0.16-5 Downloading dependency 116 of 468: libfontconfig1:arm64=2.17.1-3 Downloading dependency 117 of 468: dconf-gsettings-backend:arm64=0.49.0-4 Downloading dependency 118 of 468: gpg-agent:arm64=2.4.8-5 Downloading dependency 119 of 468: libxshmfence1:arm64=1.3.3-1 Downloading dependency 120 of 468: libhdf5-cpp-310:arm64=1.14.5+repack-4 Downloading dependency 121 of 468: openjdk-21-jre:arm64=21.0.10~6ea-1 Downloading dependency 122 of 468: libkdb5-10t64:arm64=1.22.1-2 Downloading dependency 123 of 468: libc-gconv-modules-extra:arm64=2.42-7 Downloading dependency 124 of 468: xz-utils:arm64=5.8.2-1 Downloading dependency 125 of 468: dwz:arm64=0.16-2 Downloading dependency 126 of 468: libproc2-0:arm64=2:4.0.4-9+b1 Downloading dependency 127 of 468: libxau6:arm64=1:1.0.11-1 Downloading dependency 128 of 468: liblwp-protocol-https-perl:arm64=6.14-1 Downloading dependency 129 of 468: comerr-dev:arm64=2.1-1.47.2-3+b8Get:1 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-3+b8 [57.0 kB] Fetched 57.0 kB in 0s (3523 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpge22gaq3/comerr-dev_2.1-1.47.2-3+b8_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libtinfo6 arm64 6.6+20251231-1 [346 kB] Fetched 346 kB in 0s (18.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa_h_x0oo/libtinfo6_6.6+20251231-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4 [1432 B] Fetched 1432 B in 0s (88.9 kB/s) dpkg-name: info: moved 'gcc-aarch64-linux-gnu_4%3a15.2.0-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpndhwb2f3/gcc-aarch64-linux-gnu_15.2.0-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libabsl-dev arm64 20240722.0-4 [1223 kB] Fetched 1223 kB in 0s (66.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppnojzb56/libabsl-dev_20240722.0-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libssl3t64 arm64 3.5.4-1+b1 [2725 kB] Fetched 2725 kB in 0s (111 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo1oyfmrj/libssl3t64_3.5.4-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libedit2 arm64 3.1-20251016-1 [88.7 kB] Fetched 88.7 kB in 0s (6188 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc483hb91/libedit2_3.1-20251016-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.14.1+dfsg-2 [457 kB] Fetched 457 kB in 0s (23.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7o80w7r_/libfreetype6_2.14.1+dfsg-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 12.3.0-4 [480 kB] Fetched 480 kB in 0s (24.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpossu8qrp/libharfbuzz0b_12.3.0-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 mesa-libgallium arm64 25.3.3-1 [10.4 MB] Fetched 10.4 MB in 0s (118 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7h8q0cnp/mesa-libgallium_25.3.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b2 [115 kB] Fetched 115 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4xal_ihc/libxcb-render0_1.17.0-2+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libsam-extract3 arm64 3.2.1+dfsg-2 [43.3 kB] Fetched 43.3 kB in 0s (2655 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpskw2x0xo/libsam-extract3_3.2.1+dfsg-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 util-linux arm64 2.41.3-3 [1123 kB] Fetched 1123 kB in 0s (74.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwihp0bpo/util-linux_2.41.3-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Fetched 25.7 kB in 0s (1550 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx41x04_f/libngtcp2-crypto-ossl0_1.16.0-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Fetched 63.6 kB in 0s (3956 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnd8h5kbq/libnghttp3-9_1.12.0-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libtsan2 arm64 15.2.0-12 [2399 kB] Fetched 2399 kB in 0s (67.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprabrgpcd/libtsan2_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libselinux1 arm64 3.9-4+b1 [80.8 kB] Fetched 80.8 kB in 0s (5786 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9chd3rja/libselinux1_3.9-4+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.86.3-4 [1437 kB] Fetched 1437 kB in 0s (77.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn1m9qow5/libglib2.0-0t64_2.86.3-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.11-1+b1 [770 kB] Fetched 770 kB in 0s (52.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu4karihz/python3.13_3.13.11-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 bash arm64 5.3-1 [1507 kB] Fetched 1507 kB in 0s (92.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjmw69iwc/bash_5.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdatrie1 arm64 0.2.14-1 [38.9 kB] Fetched 38.9 kB in 0s (2428 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp82tnyf28/libdatrie1_0.2.14-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 xkb-data all 2.46-2 [830 kB] Fetched 830 kB in 0s (37.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsyuc7hh9/xkb-data_2.46-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 linux-libc-dev all 6.18.3-1 [2548 kB] Fetched 2548 kB in 0s (55.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptinp6ycj/linux-libc-dev_6.18.3-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-9 [540 kB] Fetched 540 kB in 0s (53.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbrthnvae/libtool_2.5.4-9_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5+b1 [338 kB] Fetched 338 kB in 0s (32.0 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmp18bg9qjd/libmagic-mgc_5.46-5+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libassuan9 arm64 3.0.2-2+b1 [59.0 kB] Fetched 59.0 kB in 0s (5817 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp67djurhm/libassuan9_3.0.2-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libmbedx509-7 arm64 3.6.5-0.1 [151 kB] Fetched 151 kB in 0s (2903 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkgufo8qi/libmbedx509-7_3.6.5-0.1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.8.5-1 [329 kB] Fetched 329 kB in 0s (18.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgqlktsjw/libarchive13t64_3.8.5-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b2 [59.6 kB] Fetched 59.6 kB in 0s (5721 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqx2_19xk/libpsl5t64_0.21.2-1.1+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxcb-present0 arm64 1.17.0-2+b2 [106 kB] Fetched 106 kB in 0s (6296 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_cseipbx/libxcb-present0_1.17.0-2+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxcb-sync1 arm64 1.17.0-2+b2 [109 kB] Fetched 109 kB in 0s (7423 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcto9my_j/libxcb-sync1_1.17.0-2+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.22.1-2 [40.7 kB] Fetched 40.7 kB in 0s (3010 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgrvonxrk/libkadm5clnt-mit12_1.22.1-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.11-3 [1400 kB] Fetched 1400 kB in 0s (51.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpglhpkrnf/libgnutls30t64_3.8.11-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 devscripts all 2.26.4 [1093 kB] Fetched 1093 kB in 0s (42.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpen87kb9s/devscripts_2.26.4_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-5 [72.4 kB] Fetched 72.4 kB in 0s (4354 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeg0rq0jo/libjsoncpp26_1.9.6-5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 java-common all 0.76 [6776 B] Fetched 6776 B in 0s (424 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcv41t8zs/java-common_0.76_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 openjdk-21-jre-headless arm64 21.0.10~6ea-1 [40.8 MB] Fetched 40.8 MB in 0s (230 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc5ta7pu1/openjdk-21-jre-headless_21.0.10~6ea-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dh-python all 7.20251231 [119 kB] Fetched 119 kB in 0s (7039 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx8iwh_zo/dh-python_7.20251231_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Fetched 13.7 kB in 0s (872 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfnpu6814/libclone-perl_0.47-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 media-types all 14.0.0 [30.8 kB] Fetched 30.8 kB in 0s (1917 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp26oksfp/media-types_14.0.0_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 diffutils arm64 1:3.12-1 [397 kB] Fetched 397 kB in 0s (20.4 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.12-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpt2ew8v_9/diffutils_3.12-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 15.2.0-12 [372 kB] Fetched 372 kB in 0s (19.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsdokpqam/libgfortran5_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcap-ng0 arm64 0.8.5-4+b2 [17.0 kB] Fetched 17.0 kB in 0s (1123 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm7s51i1s/libcap-ng0_0.8.5-4+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpam-systemd arm64 259-1 [289 kB] Fetched 289 kB in 0s (15.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd6fkxdod/libpam-systemd_259-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.10-1+b1 [421 kB] Fetched 421 kB in 0s (21.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6fpbp77s/libp11-kit0_0.25.10-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxfixes3 arm64 1:6.0.0-2+b5 [20.4 kB] Fetched 20.4 kB in 0s (1305 kB/s) dpkg-name: info: moved 'libxfixes3_1%3a6.0.0-2+b5_arm64.deb' to '/srv/rebuilderd/tmp/tmp97a7wog6/libxfixes3_6.0.0-2+b5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxcb-randr0 arm64 1.17.0-2+b2 [116 kB] Fetched 116 kB in 0s (6786 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvolkuhpi/libxcb-randr0_1.17.0-2+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdrm2 arm64 2.4.129-1 [38.4 kB] Fetched 38.4 kB in 0s (2392 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ysbkuiz/libdrm2_2.4.129-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.11-3 [467 kB] Fetched 467 kB in 0s (24.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_pe4m5x4/libgnutls-openssl27t64_3.8.11-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Fetched 271 kB in 0s (15.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppswu28eb/libwebp7_1.5.0-0.1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (1293 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphcw4tily/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libacl1 arm64 2.3.2-2+b1 [32.2 kB] Fetched 32.2 kB in 0s (2133 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyt6goezf/libacl1_2.3.2-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libaec0 arm64 1.1.4-2+b1 [22.7 kB] Fetched 22.7 kB in 0s (1400 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn8fdddq2/libaec0_1.1.4-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.20.0-2+b1 [97.0 kB] Fetched 97.0 kB in 0s (5884 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx5o5u_79/libtasn1-6-dev_4.20.0-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.17.1-3 [54.8 kB] Fetched 54.8 kB in 0s (3390 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg5gi9n76/fontconfig-config_2.17.1-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libc-dev-bin arm64 2.42-7 [59.8 kB] Fetched 59.8 kB in 0s (3672 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps7ygv0et/libc-dev-bin_2.42-7_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-11 [626 kB] Fetched 626 kB in 0s (30.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpul0sluie/libdb5.3t64_5.3.28+dfsg2-11_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Fetched 3012 kB in 0s (74.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe68_8tqk/perl-modules-5.40_5.40.1-7_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 default-jre-headless arm64 2:1.21-76 [3192 B] Fetched 3192 B in 0s (198 kB/s) dpkg-name: info: moved 'default-jre-headless_2%3a1.21-76_arm64.deb' to '/srv/rebuilderd/tmp/tmpo3aeqqzo/default-jre-headless_1.21-76_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 base-passwd arm64 3.6.8 [54.0 kB] Fetched 54.0 kB in 0s (3336 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf06qhwgs/base-passwd_3.6.8_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.15.0-2 [92.5 kB] Fetched 92.5 kB in 0s (5650 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuyphigz2/python3-typing-extensions_4.15.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [54.5 kB] Fetched 54.5 kB in 0s (3418 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpau2c4xpg/libpangoft2-1.0-0_1.57.0-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhogweed6t64 arm64 3.10.2-1 [332 kB] Fetched 332 kB in 0s (17.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgs806trb/libhogweed6t64_3.10.2-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 mawk arm64 1.3.4.20250131-2 [133 kB] Fetched 133 kB in 0s (8280 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfpm9nld4/mawk_1.3.4.20250131-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 sed arm64 4.9-2+b1 [326 kB] Fetched 326 kB in 0s (16.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxgmx2jok/sed_4.9-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 ca-certificates-java all 20240118 [11.6 kB] Fetched 11.6 kB in 0s (733 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp77o0noj9/ca-certificates-java_20240118_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libre2-dev arm64 20250805-1+b2 [218 kB] Fetched 218 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi7c_p1dp/libre2-dev_20250805-1+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdrm-common all 2.4.129-1 [9128 B] Fetched 9128 B in 0s (557 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqj1kz10o/libdrm-common_2.4.129-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 build-essential arm64 12.12 [4624 B] Fetched 4624 B in 0s (300 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4vmrh438/build-essential_12.12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcap2 arm64 1:2.75-10+b5 [28.2 kB] Fetched 28.2 kB in 0s (1839 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.75-10+b5_arm64.deb' to '/srv/rebuilderd/tmp/tmp0dcsxyuc/libcap2_2.75-10+b5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (557 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprt5qg1tz/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-12 [11.1 MB] Fetched 11.1 MB in 0s (137 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjninqtdw/g++-15-aarch64-linux-gnu_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gosop arm64 1.1.0-3+b2 [2037 kB] Fetched 2037 kB in 0s (75.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8m1acfbf/gosop_1.1.0-3+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdrm-amdgpu1 arm64 2.4.129-1 [23.0 kB] Fetched 23.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnq1l2tfb/libdrm-amdgpu1_2.4.129-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.9-3 [10.5 kB] Fetched 10.5 kB in 0s (583 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa3aoq8ju/libpython3-stdlib_3.13.9-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 cmake arm64 4.2.1-2 [10.7 MB] Fetched 10.7 MB in 0s (236 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt5ltvuur/cmake_4.2.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libattr1 arm64 1:2.5.2-3 [22.7 kB] Fetched 22.7 kB in 0s (1397 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpxfgrpezp/libattr1_2.5.2-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libvulkan1 arm64 1.4.335.0-1 [139 kB] Fetched 139 kB in 0s (8282 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjzid42mf/libvulkan1_1.4.335.0-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.18.1-3 [878 kB] Fetched 878 kB in 0s (40.3 MB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-3_all.deb' to '/srv/rebuilderd/tmp/tmpmkkfe40z/automake_1.18.1-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 debianutils arm64 5.23.2 [92.4 kB] Fetched 92.4 kB in 0s (5600 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeohchezv/debianutils_5.23.2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 patchutils arm64 0.4.3-1 [74.4 kB] Fetched 74.4 kB in 0s (4626 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxlilf536/patchutils_0.4.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 perl arm64 5.40.1-7 [267 kB] Fetched 267 kB in 0s (15.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg4z7oq6j/perl_5.40.1-7_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libapparmor1 arm64 4.1.3-1 [43.0 kB] Fetched 43.0 kB in 0s (2540 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpea_gah6_/libapparmor1_4.1.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-11+b1 [71.1 kB] Fetched 71.1 kB in 0s (4495 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyb63n_fv/libgraphite2-3_1.3.14-11+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libglx-mesa0 arm64 25.3.3-1 [109 kB] Fetched 109 kB in 0s (6623 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz_w4zl44/libglx-mesa0_25.3.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Fetched 22.3 kB in 0s (1451 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp50fe50p/libparams-classify-perl_0.015-2+b4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.8.2-2 [361 kB] Fetched 361 kB in 0s (19.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvhvt22jl/liblzma-dev_5.8.2-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libnpth0t64 arm64 1.8-3+b1 [23.1 kB] Fetched 23.1 kB in 0s (1485 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj59_0zz_/libnpth0t64_1.8-3+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Fetched 29.6 kB in 0s (1925 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw39nizxc/pkgconf-bin_1.8.1-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (560 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgylsh_az/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Fetched 112 kB in 0s (6915 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9r5wb1fc/libnghttp2-dev_1.64.0-1.1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5+b1 [329 kB] Fetched 329 kB in 0s (17.8 MB/s) dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-5+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpnztwp20m/libgmpxx4ldbl_6.3.0+dfsg-5+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcloudproviders0 arm64 0.4.0-1 [27.5 kB] Fetched 27.5 kB in 0s (1746 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfq2thkt5/libcloudproviders0_0.4.0-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Fetched 42.4 kB in 0s (2682 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptq5t1e89/libfile-homedir-perl_1.006-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dbus-bin arm64 1.16.2-2+b1 [79.1 kB] Fetched 79.1 kB in 0s (4938 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbxhj0lju/dbus-bin_1.16.2-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 patch arm64 2.8-2 [128 kB] Fetched 128 kB in 0s (6700 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn6bf2ra5/patch_2.8-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.24.2-1 [561 kB] Fetched 561 kB in 0s (31.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf4t1wdkz/libunbound8_1.24.2-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 hostname arm64 3.25 [10.8 kB] Fetched 10.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkzy96yj6/hostname_3.25_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgtk-3-0t64 arm64 3.24.51-4 [2694 kB] Fetched 2694 kB in 0s (73.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8kgvy2pe/libgtk-3-0t64_3.24.51-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libxxhash0 arm64 0.8.3-2 [22.3 kB] Fetched 22.3 kB in 0s (2140 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpskbduze8/libxxhash0_0.8.3-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libnettle8t64 arm64 3.10.2-1 [305 kB] Fetched 305 kB in 0s (16.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgxv4h09b/libnettle8t64_3.10.2-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libabsl20240722 arm64 20240722.0-4 [452 kB] Fetched 452 kB in 0s (22.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdkv5jfur/libabsl20240722_20240722.0-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.10-1+b1 [221 kB] Fetched 221 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprt1ei0rt/libp11-kit-dev_0.25.10-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libpixman-1-0 arm64 0.46.4-1 [174 kB] Fetched 174 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpowyrza31/libpixman-1-0_0.46.4-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libbz2-1.0 arm64 1.0.8-6+b1 [37.1 kB] Fetched 37.1 kB in 0s (2353 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfb_myobz/libbz2-1.0_1.0.8-6+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxtst6 arm64 2:1.2.5-1+b1 [26.0 kB] Fetched 26.0 kB in 0s (1633 kB/s) dpkg-name: info: moved 'libxtst6_2%3a1.2.5-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpjznv9lh0/libxtst6_1.2.5-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 openssl arm64 3.5.4-1 [1457 kB] Fetched 1457 kB in 0s (54.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3accr1yt/openssl_3.5.4-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.11-1+b1 [859 kB] Fetched 859 kB in 0s (37.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptikmdpdp/libpython3.13-minimal_3.13.11-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgomp1 arm64 15.2.0-12 [126 kB] Fetched 126 kB in 0s (7527 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps4o1745n/libgomp1_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-4 [44.5 kB] Fetched 44.5 kB in 0s (2817 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp90m2iazz/libhdf5-hl-fortran-310_1.14.5+repack-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 cpp-15 arm64 15.2.0-12 [1276 B] Fetched 1276 B in 0s (80.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcahvnbcv/cpp-15_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpython3.14-minimal arm64 3.14.2-1+b1 [890 kB] Fetched 890 kB in 0s (36.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqebk6n8a/libpython3.14-minimal_3.14.2-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libnet-http-perl all 6.24-1 [23.2 kB] Fetched 23.2 kB in 0s (1453 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmponqopxx1/libnet-http-perl_6.24-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.13.9-3 [1048 B] Fetched 1048 B in 0s (66.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvpzg2cjm/python3-all_3.13.9-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 g++-15 arm64 15.2.0-12 [25.0 kB] Fetched 25.0 kB in 0s (1628 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppotsdlha/g++-15_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libasound2-data all 1.2.15.1-1 [21.2 kB] Fetched 21.2 kB in 0s (1304 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppfxw5li_/libasound2-data_1.2.15.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.22 [216 kB] Fetched 216 kB in 0s (12.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphcusk4e3/po-debconf_1.0.22_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.11-1+b1 [1903 kB] Fetched 1903 kB in 0s (114 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqvqv7mqm/libpython3.13-stdlib_3.13.11-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libperl5.40 arm64 5.40.1-7 [4134 kB] Fetched 4134 kB in 0s (72.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgr9vjfu4/libperl5.40_5.40.1-7_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Fetched 1453 kB in 0s (44.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp42db2ow2/man-db_2.13.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libncbi-vdb-dev arm64 3.2.1+dfsg-2 [1572 kB] Fetched 1572 kB in 0s (52.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0cg_dz21/libncbi-vdb-dev_3.2.1+dfsg-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.9-3 [27.6 kB] Fetched 27.6 kB in 0s (1735 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd59cej3k/python3_3.13.9-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxcb-dri3-0 arm64 1.17.0-2+b2 [107 kB] Fetched 107 kB in 0s (6521 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpahmgac0y/libxcb-dri3-0_1.17.0-2+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5+b1 [44.0 kB] Fetched 44.0 kB in 0s (2765 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmp_xhfefzg/file_5.46-5+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libaec-dev arm64 1.1.4-2+b1 [20.3 kB] Fetched 20.3 kB in 0s (1260 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp64ff4qww/libaec-dev_1.1.4-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b2 [170 kB] Fetched 170 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4529kau0/libevent-2.1-7t64_2.1.12-stable-10+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgl1-mesa-dri arm64 25.3.3-1 [48.0 kB] Fetched 48.0 kB in 0s (2978 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7unmsrcc/libgl1-mesa-dri_25.3.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.22.1-2 [77.1 kB] Fetched 77.1 kB in 0s (4756 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptr0x29av/libk5crypto3_1.22.1-2_arm64.deb' Downloading dependency 130 of 468: libtinfo6:arm64=6.6+20251231-1 Downloading dependency 131 of 468: gcc-aarch64-linux-gnu:arm64=4:15.2.0-4 Downloading dependency 132 of 468: libabsl-dev:arm64=20240722.0-4 Downloading dependency 133 of 468: libssl3t64:arm64=3.5.4-1+b1 Downloading dependency 134 of 468: libedit2:arm64=3.1-20251016-1 Downloading dependency 135 of 468: libfreetype6:arm64=2.14.1+dfsg-2 Downloading dependency 136 of 468: libharfbuzz0b:arm64=12.3.0-4 Downloading dependency 137 of 468: mesa-libgallium:arm64=25.3.3-1 Downloading dependency 138 of 468: libxcb-render0:arm64=1.17.0-2+b2 Downloading dependency 139 of 468: libsam-extract3:arm64=3.2.1+dfsg-2 Downloading dependency 140 of 468: 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dependency 202 of 468: libpython3-stdlib:arm64=3.13.9-3 Downloading dependency 203 of 468: cmake:arm64=4.2.1-2 Downloading dependency 204 of 468: libattr1:arm64=1:2.5.2-3 Downloading dependency 205 of 468: libvulkan1:arm64=1.4.335.0-1 Downloading dependency 206 of 468: automake:arm64=1:1.18.1-3 Downloading dependency 207 of 468: debianutils:arm64=5.23.2 Downloading dependency 208 of 468: patchutils:arm64=0.4.3-1 Downloading dependency 209 of 468: perl:arm64=5.40.1-7 Downloading dependency 210 of 468: libapparmor1:arm64=4.1.3-1 Downloading dependency 211 of 468: libgraphite2-3:arm64=1.3.14-11+b1 Downloading dependency 212 of 468: libglx-mesa0:arm64=25.3.3-1 Downloading dependency 213 of 468: libparams-classify-perl:arm64=0.015-2+b4 Downloading dependency 214 of 468: liblzma-dev:arm64=5.8.2-2 Downloading dependency 215 of 468: libnpth0t64:arm64=1.8-3+b1 Downloading dependency 216 of 468: pkgconf-bin:arm64=1.8.1-4 Downloading dependency 217 of 468: dh-strip-nondeterminism:arm64=1.15.0-1 Downloading dependency 218 of 468: libnghttp2-dev:arm64=1.64.0-1.1+b1 Downloading dependency 219 of 468: libgmpxx4ldbl:arm64=2:6.3.0+dfsg-5+b1 Downloading dependency 220 of 468: libcloudproviders0:arm64=0.4.0-1 Downloading dependency 221 of 468: libfile-homedir-perl:arm64=1.006-2 Downloading dependency 222 of 468: dbus-bin:arm64=1.16.2-2+b1 Downloading dependency 223 of 468: patch:arm64=2.8-2 Downloading dependency 224 of 468: libunbound8:arm64=1.24.2-1 Downloading dependency 225 of 468: hostname:arm64=3.25 Downloading dependency 226 of 468: libgtk-3-0t64:arm64=3.24.51-4 Downloading dependency 227 of 468: libxxhash0:arm64=0.8.3-2 Downloading dependency 228 of 468: libnettle8t64:arm64=3.10.2-1 Downloading dependency 229 of 468: libabsl20240722:arm64=20240722.0-4 Downloading dependency 230 of 468: libp11-kit-dev:arm64=0.25.10-1+b1 Downloading dependency 231 of 468: libpixman-1-0:arm64=0.46.4-1 Downloading dependency 232 of 468: libbz2-1.0:arm64=1.0.8-6+b1 Downloading dependency 233 of 468: libxtst6:arm64=2:1.2.5-1+b1 Downloading dependency 234 of 468: openssl:arm64=3.5.4-1 Downloading dependency 235 of 468: libpython3.13-minimal:arm64=3.13.11-1+b1 Downloading dependency 236 of 468: libgomp1:arm64=15.2.0-12 Downloading dependency 237 of 468: libhdf5-hl-fortran-310:arm64=1.14.5+repack-4 Downloading dependency 238 of 468: cpp-15:arm64=15.2.0-12 Downloading dependency 239 of 468: libpython3.14-minimal:arm64=3.14.2-1+b1 Downloading dependency 240 of 468: libnet-http-perl:arm64=6.24-1 Downloading dependency 241 of 468: python3-all:arm64=3.13.9-3 Downloading dependency 242 of 468: g++-15:arm64=15.2.0-12 Downloading dependency 243 of 468: libasound2-data:arm64=1.2.15.1-1 Downloading dependency 244 of 468: po-debconf:arm64=1.0.22 Downloading dependency 245 of 468: libpython3.13-stdlib:arm64=3.13.11-1+b1 Downloading dependency 246 of 468: libperl5.40:arm64=5.40.1-7 Downloading dependency 247 of 468: man-db:arm64=2.13.1-1 Downloading dependency 248 of 468: libncbi-vdb-dev:arm64=3.2.1+dfsg-2 Downloading dependency 249 of 468: python3:arm64=3.13.9-3 Downloading dependency 250 of 468: libxcb-dri3-0:arm64=1.17.0-2+b2 Downloading dependency 251 of 468: file:arm64=1:5.46-5+b1 Downloading dependency 252 of 468: libaec-dev:arm64=1.1.4-2+b1 Downloading dependency 253 of 468: libevent-2.1-7t64:arm64=2.1.12-stable-10+b2 Downloading dependency 254 of 468: libgl1-mesa-dri:arm64=25.3.3-1 Downloading dependency 255 of 468: libk5crypto3:arm64=1.22.1-2 Downloading dependency 256 of 468: python3-setuptools:arm64=78.1.1-0.1Get:1 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Fetched 738 kB in 0s (34.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk5folzxm/python3-setuptools_78.1.1-0.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Fetched 20.2 kB in 0s (1284 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3yvidfnv/liblwp-mediatypes-perl_6.04-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libasan8 arm64 15.2.0-12 [2601 kB] Fetched 2601 kB in 0s (70.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp54cc2aqo/libasan8_15.2.0-12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libgdbm-compat4t64 arm64 1.26-1 [52.8 kB] Fetched 52.8 kB in 0s (3227 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx81fpmyg/libgdbm-compat4t64_1.26-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.12-1+b1 [27.2 kB] Fetched 27.2 kB in 0s (1657 kB/s) dpkg-name: info: moved 'libxrender1_1%3a0.9.12-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmp99bggyxe/libxrender1_0.9.12-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdpkg-perl all 1.23.3 [657 kB] Fetched 657 kB in 0s (31.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1sbmp7o2/libdpkg-perl_1.23.3_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-2 [15.7 kB] Fetched 15.7 kB in 0s (1041 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpielkguup/libdevel-callchecker-perl_0.009-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b4 [49.0 kB] Fetched 49.0 kB in 0s (3129 kB/s) dpkg-name: info: moved 'libxext6_2%3a1.3.4-1+b4_arm64.deb' to '/srv/rebuilderd/tmp/tmp7cj_uuz5/libxext6_1.3.4-1+b4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Fetched 22.9 kB in 0s (514 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiy3krizh/libtry-tiny-perl_0.32-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025c-3 [263 kB] Fetched 263 kB in 0s (14.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9pchdblo/tzdata_2025c-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dbus arm64 1.16.2-2+b1 [70.8 kB] Fetched 70.8 kB in 0s (4465 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqvqvv7zs/dbus_1.16.2-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 flex arm64 2.6.4-8.2+b5 [411 kB] Fetched 411 kB in 0s (22.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0zho_wu7/flex_2.6.4-8.2+b5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 adwaita-icon-theme all 49.0-1 [507 kB] Fetched 507 kB in 0s (24.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfsvtltul/adwaita-icon-theme_49.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcups2t64 arm64 2.4.16-1 [235 kB] Fetched 235 kB in 0s (13.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5s1h2ca1/libcups2t64_2.4.16-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libbinutils arm64 2.45.50.20251209-1 [670 kB] Fetched 670 kB in 0s (32.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp12xhlflw/libbinutils_2.45.50.20251209-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.15.1+dfsg-2+b1 [591 kB] Fetched 591 kB in 0s (29.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8n1jn2vo/libxml2-16_2.15.1+dfsg-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 bzip2 arm64 1.0.8-6+b1 [39.7 kB] Fetched 39.7 kB in 0s (2577 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpapnpx6qk/bzip2_1.0.8-6+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6+b1 [9852 B] Fetched 9852 B in 0s (638 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplen6rwe7/libkeyutils1_1.6.3-6+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgl1 arm64 1.7.0-3 [89.9 kB] Fetched 89.9 kB in 0s (5459 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvvrckfqp/libgl1_1.7.0-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libncursesw6 arm64 6.6+20251231-1 [125 kB] Fetched 125 kB in 0s (7284 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbkzie0ir/libncursesw6_6.6+20251231-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB] Fetched 97.5 kB in 0s (5905 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk0tz9n4h/libhtml-parser-perl_3.83-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 openssl-provider-legacy arm64 3.5.4-1 [306 kB] Fetched 306 kB in 0s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw9ybffzn/openssl-provider-legacy_3.5.4-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 debian-archive-keyring all 2025.1 [179 kB] Fetched 179 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjcc6lm3l/debian-archive-keyring_2025.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2+b1 [47.9 kB] Fetched 47.9 kB in 0s (3012 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptpw7vylg/libtasn1-6_4.20.0-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdbus-1-3 arm64 1.16.2-2+b1 [169 kB] Fetched 169 kB in 0s (9878 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd85qnj_i/libdbus-1-3_1.16.2-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.22.1-2 [315 kB] Fetched 315 kB in 0s (19.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1gljlk6u/libkrb5-3_1.22.1-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpcsclite1 arm64 2.4.1-1 [55.2 kB] Fetched 55.2 kB in 0s (3567 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprfuaru9y/libpcsclite1_2.4.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libmpfr6 arm64 4.2.2-2 [685 kB] Fetched 685 kB in 0s (33.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8ozv22ub/libmpfr6_4.2.2-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3.14 arm64 3.14.2-1+b1 [829 kB] Fetched 829 kB in 0s (33.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpehkmiaki/python3.14_3.14.2-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libc-bin arm64 2.42-7 [574 kB] Fetched 574 kB in 0s (28.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpolgzxfbf/libc-bin_2.42-7_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dbus-daemon arm64 1.16.2-2+b1 [150 kB] Fetched 150 kB in 0s (8517 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw48sunez/dbus-daemon_1.16.2-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Fetched 162 kB in 0s (9455 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkq3e53zl/ca-certificates_20250419_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.29 [92.6 kB] Fetched 92.6 kB in 0s (5668 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwdzsq6uc/libdebhelper-perl_13.29_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4 [1196 B] Fetched 1196 B in 0s (77.5 kB/s) dpkg-name: info: moved 'g++-aarch64-linux-gnu_4%3a15.2.0-4_arm64.deb' to '/srv/rebuilderd/tmp/tmp4y3j61hc/g++-aarch64-linux-gnu_15.2.0-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libc6-dev arm64 2.42-7 [1695 kB] Fetched 1695 kB in 0s (62.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp25j86ytk/libc6-dev_2.42-7_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Fetched 19.8 kB in 0s (1295 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdvsr88et/libsasl2-modules-db_2.1.28+dfsg1-10_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b2 [142 kB] Fetched 142 kB in 0s (8183 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppcu_6wh0/libxcb1_1.17.0-2+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 apt arm64 3.1.13 [1419 kB] Fetched 1419 kB in 0s (46.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6qw8tcms/apt_3.1.13_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libllvm21 arm64 1:21.1.8-1+b1 [25.4 MB] Fetched 25.4 MB in 0s (156 MB/s) dpkg-name: info: moved 'libllvm21_1%3a21.1.8-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpzj8mfvy4/libllvm21_21.1.8-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libmount1 arm64 2.41.3-3 [199 kB] Fetched 199 kB in 0s (11.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8ixzpprj/libmount1_2.41.3-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-1+b2 [85.9 kB] Fetched 85.9 kB in 0s (5088 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b2_arm64.deb' to '/srv/rebuilderd/tmp/tmp5lv88_j5/zlib1g_1.3.dfsg+really1.3.1-1+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libthai-data all 0.1.30-1 [172 kB] Fetched 172 kB in 0s (9833 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmqpytnd/libthai-data_0.1.30-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-4 [68.4 kB] Fetched 68.4 kB in 0s (4224 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsr_7jl5i/libhdf5-hl-310_1.14.5+repack-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Fetched 123 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvh3wvwog/libngtcp2-16_1.16.0-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsystemd0 arm64 259-1 [430 kB] Fetched 430 kB in 0s (22.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyr0gct_u/libsystemd0_259-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsystemd-shared arm64 259-1 [2089 kB] Fetched 2089 kB in 0s (62.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvey3clux/libsystemd-shared_259-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.53-1 [275 kB] Fetched 275 kB in 0s (15.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt67_f2po/libpng16-16t64_1.6.53-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gpg arm64 2.4.8-5 [572 kB] Fetched 572 kB in 0s (28.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_0dur_lw/gpg_2.4.8-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libpam-modules-bin arm64 1.7.0-5 [48.3 kB] Fetched 48.3 kB in 0s (2726 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8ypajp8k/libpam-modules-bin_1.7.0-5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-3+b1 [330 kB] Fetched 330 kB in 0s (18.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdm88993m/libzstd-dev_1.5.7+dfsg-3+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 perl-base arm64 5.40.1-7 [1528 kB] Fetched 1528 kB in 0s (49.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpudhtvx25/perl-base_5.40.1-7_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2+b1 [42.9 kB] Fetched 42.9 kB in 0s (2543 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ap8owig/libdeflate0_1.23-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3.14-minimal arm64 3.14.2-1+b1 [2233 kB] Fetched 2233 kB in 0s (66.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp93s8qwso/python3.14-minimal_3.14.2-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxrandr2 arm64 2:1.5.4-1+b4 [35.6 kB] Fetched 35.6 kB in 0s (2094 kB/s) dpkg-name: info: moved 'libxrandr2_2%3a1.5.4-1+b4_arm64.deb' to '/srv/rebuilderd/tmp/tmp14pz96ez/libxrandr2_1.5.4-1+b4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 default-jdk arm64 2:1.21-76 [1076 B] Fetched 1076 B in 0s (54.5 kB/s) dpkg-name: info: moved 'default-jdk_2%3a1.21-76_arm64.deb' to '/srv/rebuilderd/tmp/tmpi0wd371f/default-jdk_1.21-76_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Fetched 388 kB in 0s (19.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp95rpmson/libssh2-1-dev_1.11.1-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxinerama1 arm64 2:1.1.4-3+b5 [16.0 kB] Fetched 16.0 kB in 0s (996 kB/s) dpkg-name: info: moved 'libxinerama1_2%3a1.1.4-3+b5_arm64.deb' to '/srv/rebuilderd/tmp/tmpat3awhlt/libxinerama1_1.1.4-3+b5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libpam0g arm64 1.7.0-5 [68.8 kB] Fetched 68.8 kB in 0s (4823 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk3qa41cp/libpam0g_1.7.0-5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libavahi-client3 arm64 0.8-17 [48.5 kB] Fetched 48.5 kB in 0s (2876 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprsv7_sd1/libavahi-client3_0.8-17_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.5.4-1+b1 [3377 kB] Fetched 3377 kB in 0s (77.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprlqt3anp/libssl-dev_3.5.4-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 javahelper all 0.81 [79.4 kB] Fetched 79.4 kB in 0s (4772 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2cwdvvp0/javahelper_0.81_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgif7 arm64 5.2.2-1+b2 [43.8 kB] Fetched 43.8 kB in 0s (2720 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpilvmtywk/libgif7_5.2.2-1+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcurl4-openssl-dev arm64 8.18.0-2 [510 kB] Fetched 510 kB in 0s (26.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt6y0ukvt/libcurl4-openssl-dev_8.18.0-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhdf5-fortran-310 arm64 1.14.5+repack-4 [114 kB] Fetched 114 kB in 0s (6678 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsorkqt9h/libhdf5-fortran-310_1.14.5+repack-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.7.1-1 [334 kB] Fetched 334 kB in 0s (29.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpniquierz/libtiff6_4.7.1-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgcc-15-dev arm64 15.2.0-12 [2365 kB] Fetched 2365 kB in 0s (68.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_361y5x7/libgcc-15-dev_15.2.0-12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Fetched 305 kB in 0s (3605 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4xhrwake/libldap-dev_2.6.10+dfsg-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Fetched 17.8 kB in 0s (1145 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7mdnqisq/libmodule-runtime-perl_0.018-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gpgconf arm64 2.4.8-5 [121 kB] Fetched 121 kB in 0s (7371 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx3kp672k/gpgconf_2.4.8-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libmpc3 arm64 1.3.1-2 [50.2 kB] Fetched 50.2 kB in 0s (3005 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ws6b2_9/libmpc3_1.3.1-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-4 [13.7 kB] Fetched 13.7 kB in 0s (878 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpioshshgv/python3-autocommand_2.2.2-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (7392 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxmx0iv77/debconf_1.5.91_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Fetched 71.7 kB in 0s (4420 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_b6ha63z/python3-more-itertools_10.8.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libctf0 arm64 2.45.50.20251209-1 [85.6 kB] Fetched 85.6 kB in 0s (5395 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbusz63yf/libctf0_2.45.50.20251209-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Fetched 114 kB in 0s (6277 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa_xy0udy/libsharpyuv0_1.5.0-0.1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsqlite3-0 arm64 3.46.1-8 [884 kB] Fetched 884 kB in 0s (62.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpupau7dun/libsqlite3-0_3.46.1-8_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Fetched 88.5 kB in 0s (4774 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd6pv0zhs/ncbi-vdb-data_3.2.1+dfsg-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.2-3+b1 [763 kB] Fetched 763 kB in 0s (31.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplfyr6x3e/libgcrypt20_1.11.2-3+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Fetched 37.1 kB in 0s (2330 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjn5a0w9y/python3-typeguard_4.4.4-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.01-1 [80.0 kB] Fetched 80.0 kB in 0s (4676 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptz45wluy/libhttp-message-perl_7.01-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [34.1 kB] Fetched 34.1 kB in 0s (2122 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps689siqp/libpangocairo-1.0-0_1.57.0-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libuuid1 arm64 2.41.3-3 [38.2 kB] Fetched 38.2 kB in 0s (2677 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqv2ca_cs/libuuid1_2.41.3-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 pinentry-curses arm64 1.3.2-3 [85.0 kB] Fetched 85.0 kB in 0s (6128 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpch8a34k6/pinentry-curses_1.3.2-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libmbedtls21 arm64 3.6.5-0.1 [230 kB] Fetched 230 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptt9igjq4/libmbedtls21_3.6.5-0.1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-4 [44.9 kB] Fetched 44.9 kB in 0s (2813 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmn6ytdjy/libconfig-inifiles-perl_3.000003-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Fetched 11.0 kB in 0s (668 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpilt0aoos/python3-zipp_3.23.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (724 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfteo76_7/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libncbi-wvdb3 arm64 3.2.1+dfsg-2 [1097 kB] Fetched 1097 kB in 0s (61.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp239c50si/libncbi-wvdb3_3.2.1+dfsg-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b5 [34.9 kB] Fetched 34.9 kB in 0s (2114 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphktw_o8w/libclass-xsaccessor-perl_1.19-4+b5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 make arm64 4.4.1-3 [453 kB] Fetched 453 kB in 0s (23.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmtpcd_gz/make_4.4.1-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcc1-0 arm64 15.2.0-12 [41.3 kB] Fetched 41.3 kB in 0s (1744 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps7o2fbdd/libcc1-0_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxml2-dev arm64 2.15.1+dfsg-2+b1 [720 kB] Fetched 720 kB in 0s (43.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpml78z4e2/libxml2-dev_2.15.1+dfsg-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (2215 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx6qd9vd1/sensible-utils_0.0.26_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libx11-xcb1 arm64 2:1.8.12-1+b1 [248 kB] Fetched 248 kB in 0s (4404 kB/s) dpkg-name: info: moved 'libx11-xcb1_2%3a1.8.12-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpnu_rt12c/libx11-xcb1_1.8.12-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 liblsan0 arm64 15.2.0-12 [1194 kB] Fetched 1194 kB in 0s (19.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_e4cjpus/liblsan0_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (6515 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1tg5n_zp/libpam-runtime_1.7.0-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9+b1 [871 kB] Fetched 871 kB in 0s (20.8 MB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-9+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmp5r8z11ih/procps_4.0.4-9+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 openjdk-21-jdk-headless arm64 21.0.10~6ea-1 [82.2 MB] Fetched 82.2 MB in 1s (95.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1zm28e90/openjdk-21-jdk-headless_21.0.10~6ea-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.9-3 [27.6 kB] Fetched 27.6 kB in 0s (1772 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmd9uapha/python3-minimal_3.13.9-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libmd0 arm64 1.1.0-2+b1 [33.7 kB] Fetched 33.7 kB in 0s (564 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpypphtxw_/libmd0_1.1.0-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (775 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk4n3nbnn/netbase_6.5_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libatspi2.0-0t64 arm64 2.59.0-1 [77.1 kB] Fetched 77.1 kB in 0s (4707 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw_ebinpn/libatspi2.0-0t64_2.59.0-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxxf86vm1 arm64 1:1.1.4-2 [19.5 kB] Fetched 19.5 kB in 0s (324 kB/s) dpkg-name: info: moved 'libxxf86vm1_1%3a1.1.4-2_arm64.deb' to '/srv/rebuilderd/tmp/tmpjzweynho/libxxf86vm1_1.1.4-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 liblzma5 arm64 5.8.2-2 [320 kB] Fetched 320 kB in 0s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8kx1apd8/liblzma5_5.8.2-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.11-3 [467 kB] Fetched 467 kB in 0s (44.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoz12pxwq/libgnutls-dane0t64_3.8.11-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Fetched 343 kB in 0s (17.3 MB/s) dpkg-name: info: moved 'libx11-data_2%3a1.8.12-1_all.deb' to '/srv/rebuilderd/tmp/tmp65i4z_f5/libx11-data_1.8.12-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgdk-pixbuf2.0-common all 2.44.4+dfsg-1 [313 kB] Fetched 313 kB in 0s (16.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6p973ma5/libgdk-pixbuf2.0-common_2.44.4+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libthai0 arm64 0.1.30-1 [51.1 kB] Fetched 51.1 kB in 0s (3108 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5uy7qqw1/libthai0_0.1.30-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libbsd0 arm64 0.12.2-2+b1 [130 kB] Fetched 130 kB in 0s (7578 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwkug_24a/libbsd0_0.12.2-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Fetched 173 kB in 0s (9276 kB/s) dpkg-name: info: moved 'libjpeg62-turbo_1%3a2.1.5-4_arm64.deb' to '/srv/rebuilderd/tmp/tmp40380e_x/libjpeg62-turbo_2.1.5-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsensors5 arm64 1:3.6.2-2+b1 [36.8 kB] Fetched 36.8 kB in 0s (2214 kB/s) dpkg-name: info: moved 'libsensors5_1%3a3.6.2-2+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpbx2x8isi/libsensors5_3.6.2-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libnspr4 arm64 2:4.38.2-1 [102 kB] Fetched 102 kB in 0s (5803 kB/s) dpkg-name: info: moved 'libnspr4_2%3a4.38.2-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpk8el4ltq/libnspr4_4.38.2-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libavahi-common3 arm64 0.8-17 [44.9 kB] Fetched 44.9 kB in 0s (2777 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwri8oxkz/libavahi-common3_0.8-17_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libmbedcrypto16 arm64 3.6.5-0.1 [345 kB] Fetched 345 kB in 0s (18.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp_dj3pz4/libmbedcrypto16_3.6.5-0.1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b2 [105 kB] Fetched 105 kB in 0s (5816 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkgytl37n/libxcb-shm0_1.17.0-2+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libpam-modules arm64 1.7.0-5 [172 kB] Fetched 172 kB in 0s (9527 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5vxu0ut3/libpam-modules_1.7.0-5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 binfmt-support arm64 2.2.2-8 [68.1 kB] Fetched 68.1 kB in 0s (3732 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5uwpfvb9/binfmt-support_2.2.2-8_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dbus-user-session arm64 1.16.2-2+b1 [52.4 kB] Fetched 52.4 kB in 0s (3368 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl38t7mau/dbus-user-session_1.16.2-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-2 [27.9 kB] Fetched 27.9 kB in 0s (1716 kB/s) dpkg-name: info: moved 'libxdmcp6_1%3a1.1.5-2_arm64.deb' to '/srv/rebuilderd/tmp/tmpas9l_dxm/libxdmcp6_1.1.5-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgtk-3-common all 3.24.51-4 [4923 kB] Fetched 4923 kB in 0s (89.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2wsn6ma7/libgtk-3-common_3.24.51-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdconf1 arm64 0.49.0-4 [41.8 kB] Fetched 41.8 kB in 0s (2468 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa2mx8ubl/libdconf1_0.49.0-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libitm1 arm64 15.2.0-12 [24.1 kB] Fetched 24.1 kB in 0s (1502 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi92o3721/libitm1_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpango-1.0-0 arm64 1.57.0-1 [214 kB] Fetched 214 kB in 0s (12.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1xz7pokb/libpango-1.0-0_1.57.0-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.34-2 [111 kB] Fetched 111 kB in 0s (6210 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4c3fnap/liburi-perl_5.34-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libgprofng0 arm64 2.45.50.20251209-1 [679 kB] Fetched 679 kB in 0s (31.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt646njrc/libgprofng0_2.45.50.20251209-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Fetched 12.1 kB in 0s (598 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy3qqtepm/libio-string-perl_1.08-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.3-3 [97.7 kB] Fetched 97.7 kB in 0s (6542 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpug95_7ov/bsdextrautils_2.41.3-3_arm64.deb' Downloading dependency 257 of 468: liblwp-mediatypes-perl:arm64=6.04-2 Downloading dependency 258 of 468: libasan8:arm64=15.2.0-12 Downloading dependency 259 of 468: libgdbm-compat4t64:arm64=1.26-1 Downloading dependency 260 of 468: libxrender1:arm64=1:0.9.12-1+b1 Downloading dependency 261 of 468: libdpkg-perl:arm64=1.23.3 Downloading dependency 262 of 468: libdevel-callchecker-perl:arm64=0.009-2 Downloading dependency 263 of 468: libxext6:arm64=2:1.3.4-1+b4 Downloading dependency 264 of 468: libtry-tiny-perl:arm64=0.32-1 Downloading dependency 265 of 468: tzdata:arm64=2025c-3 Downloading dependency 266 of 468: dbus:arm64=1.16.2-2+b1 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dependency 282 of 468: libpcsclite1:arm64=2.4.1-1 Downloading dependency 283 of 468: libmpfr6:arm64=4.2.2-2 Downloading dependency 284 of 468: python3.14:arm64=3.14.2-1+b1 Downloading dependency 285 of 468: libc-bin:arm64=2.42-7 Downloading dependency 286 of 468: dbus-daemon:arm64=1.16.2-2+b1 Downloading dependency 287 of 468: ca-certificates:arm64=20250419 Downloading dependency 288 of 468: libdebhelper-perl:arm64=13.29 Downloading dependency 289 of 468: g++-aarch64-linux-gnu:arm64=4:15.2.0-4 Downloading dependency 290 of 468: libc6-dev:arm64=2.42-7 Downloading dependency 291 of 468: libsasl2-modules-db:arm64=2.1.28+dfsg1-10 Downloading dependency 292 of 468: libxcb1:arm64=1.17.0-2+b2 Downloading dependency 293 of 468: apt:arm64=3.1.13 Downloading dependency 294 of 468: libllvm21:arm64=1:21.1.8-1+b1 Downloading dependency 295 of 468: libmount1:arm64=2.41.3-3 Downloading dependency 296 of 468: zlib1g:arm64=1:1.3.dfsg+really1.3.1-1+b2 Downloading dependency 297 of 468: libthai-data:arm64=0.1.30-1 Downloading dependency 298 of 468: libhdf5-hl-310:arm64=1.14.5+repack-4 Downloading dependency 299 of 468: libngtcp2-16:arm64=1.16.0-1 Downloading dependency 300 of 468: libsystemd0:arm64=259-1 Downloading dependency 301 of 468: libsystemd-shared:arm64=259-1 Downloading dependency 302 of 468: libpng16-16t64:arm64=1.6.53-1 Downloading dependency 303 of 468: gpg:arm64=2.4.8-5 Downloading dependency 304 of 468: libpam-modules-bin:arm64=1.7.0-5 Downloading dependency 305 of 468: libzstd-dev:arm64=1.5.7+dfsg-3+b1 Downloading dependency 306 of 468: perl-base:arm64=5.40.1-7 Downloading dependency 307 of 468: libdeflate0:arm64=1.23-2+b1 Downloading dependency 308 of 468: python3.14-minimal:arm64=3.14.2-1+b1 Downloading dependency 309 of 468: libxrandr2:arm64=2:1.5.4-1+b4 Downloading dependency 310 of 468: default-jdk:arm64=2:1.21-76 Downloading dependency 311 of 468: libssh2-1-dev:arm64=1.11.1-1 Downloading dependency 312 of 468: libxinerama1:arm64=2:1.1.4-3+b5 Downloading dependency 313 of 468: libpam0g:arm64=1.7.0-5 Downloading dependency 314 of 468: libavahi-client3:arm64=0.8-17 Downloading dependency 315 of 468: libssl-dev:arm64=3.5.4-1+b1 Downloading dependency 316 of 468: javahelper:arm64=0.81 Downloading dependency 317 of 468: libgif7:arm64=5.2.2-1+b2 Downloading dependency 318 of 468: libcurl4-openssl-dev:arm64=8.18.0-2 Downloading dependency 319 of 468: libhdf5-fortran-310:arm64=1.14.5+repack-4 Downloading dependency 320 of 468: libtiff6:arm64=4.7.1-1 Downloading dependency 321 of 468: libgcc-15-dev:arm64=15.2.0-12 Downloading dependency 322 of 468: libldap-dev:arm64=2.6.10+dfsg-1 Downloading dependency 323 of 468: libmodule-runtime-perl:arm64=0.018-1 Downloading dependency 324 of 468: gpgconf:arm64=2.4.8-5 Downloading dependency 325 of 468: libmpc3:arm64=1.3.1-2 Downloading dependency 326 of 468: python3-autocommand:arm64=2.2.2-4 Downloading dependency 327 of 468: debconf:arm64=1.5.91 Downloading dependency 328 of 468: python3-more-itertools:arm64=10.8.0-1 Downloading dependency 329 of 468: libctf0:arm64=2.45.50.20251209-1 Downloading dependency 330 of 468: libsharpyuv0:arm64=1.5.0-0.1 Downloading dependency 331 of 468: libsqlite3-0:arm64=3.46.1-8 Downloading dependency 332 of 468: ncbi-vdb-data:arm64=3.2.1+dfsg-2 Downloading dependency 333 of 468: libgcrypt20:arm64=1.11.2-3+b1 Downloading dependency 334 of 468: python3-typeguard:arm64=4.4.4-1 Downloading dependency 335 of 468: libhttp-message-perl:arm64=7.01-1 Downloading dependency 336 of 468: libpangocairo-1.0-0:arm64=1.57.0-1 Downloading dependency 337 of 468: libuuid1:arm64=2.41.3-3 Downloading dependency 338 of 468: pinentry-curses:arm64=1.3.2-3 Downloading dependency 339 of 468: libmbedtls21:arm64=3.6.5-0.1 Downloading dependency 340 of 468: libconfig-inifiles-perl:arm64=3.000003-4 Downloading dependency 341 of 468: python3-zipp:arm64=3.23.0-1 Downloading dependency 342 of 468: python3-jaraco.text:arm64=4.0.0-1 Downloading dependency 343 of 468: libncbi-wvdb3:arm64=3.2.1+dfsg-2 Downloading dependency 344 of 468: libclass-xsaccessor-perl:arm64=1.19-4+b5 Downloading dependency 345 of 468: make:arm64=4.4.1-3 Downloading dependency 346 of 468: libcc1-0:arm64=15.2.0-12 Downloading dependency 347 of 468: libxml2-dev:arm64=2.15.1+dfsg-2+b1 Downloading dependency 348 of 468: sensible-utils:arm64=0.0.26 Downloading dependency 349 of 468: libx11-xcb1:arm64=2:1.8.12-1+b1 Downloading dependency 350 of 468: liblsan0:arm64=15.2.0-12 Downloading dependency 351 of 468: libpam-runtime:arm64=1.7.0-5 Downloading dependency 352 of 468: procps:arm64=2:4.0.4-9+b1 Downloading dependency 353 of 468: openjdk-21-jdk-headless:arm64=21.0.10~6ea-1 Downloading dependency 354 of 468: python3-minimal:arm64=3.13.9-3 Downloading dependency 355 of 468: libmd0:arm64=1.1.0-2+b1 Downloading dependency 356 of 468: netbase:arm64=6.5 Downloading dependency 357 of 468: libatspi2.0-0t64:arm64=2.59.0-1 Downloading dependency 358 of 468: libxxf86vm1:arm64=1:1.1.4-2 Downloading dependency 359 of 468: liblzma5:arm64=5.8.2-2 Downloading dependency 360 of 468: libgnutls-dane0t64:arm64=3.8.11-3 Downloading dependency 361 of 468: libx11-data:arm64=2:1.8.12-1 Downloading dependency 362 of 468: libgdk-pixbuf2.0-common:arm64=2.44.4+dfsg-1 Downloading dependency 363 of 468: libthai0:arm64=0.1.30-1 Downloading dependency 364 of 468: libbsd0:arm64=0.12.2-2+b1 Downloading dependency 365 of 468: libjpeg62-turbo:arm64=1:2.1.5-4 Downloading dependency 366 of 468: libsensors5:arm64=1:3.6.2-2+b1 Downloading dependency 367 of 468: libnspr4:arm64=2:4.38.2-1 Downloading dependency 368 of 468: libavahi-common3:arm64=0.8-17 Downloading dependency 369 of 468: libmbedcrypto16:arm64=3.6.5-0.1 Downloading dependency 370 of 468: libxcb-shm0:arm64=1.17.0-2+b2 Downloading dependency 371 of 468: libpam-modules:arm64=1.7.0-5 Downloading dependency 372 of 468: binfmt-support:arm64=2.2.2-8 Downloading dependency 373 of 468: dbus-user-session:arm64=1.16.2-2+b1 Downloading dependency 374 of 468: libxdmcp6:arm64=1:1.1.5-2 Downloading dependency 375 of 468: libgtk-3-common:arm64=3.24.51-4 Downloading dependency 376 of 468: libdconf1:arm64=0.49.0-4 Downloading dependency 377 of 468: libitm1:arm64=15.2.0-12 Downloading dependency 378 of 468: libpango-1.0-0:arm64=1.57.0-1 Downloading dependency 379 of 468: liburi-perl:arm64=5.34-2 Downloading dependency 380 of 468: libgprofng0:arm64=2.45.50.20251209-1 Downloading dependency 381 of 468: libio-string-perl:arm64=1.08-4 Downloading dependency 382 of 468: bsdextrautils:arm64=2.41.3-3 Downloading dependency 383 of 468: librole-tiny-perl:arm64=2.002004-1Get:1 http://deb.debian.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Fetched 21.4 kB in 0s (1371 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwdvme09/librole-tiny-perl_2.002004-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 systemd arm64 259-1 [3061 kB] Fetched 3061 kB in 0s (74.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxmfgigzm/systemd_259-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.6-1.1 [128 kB] Fetched 128 kB in 0s (6479 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4i5e7_mj/librhash1_1.4.6-1.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libsam-extract-dev arm64 3.2.1+dfsg-2 [47.0 kB] Fetched 47.0 kB in 0s (2962 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm7viwcez/libsam-extract-dev_3.2.1+dfsg-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 systemd-sysv arm64 259-1 [64.8 kB] Fetched 64.8 kB in 0s (4038 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkd40a2rv/systemd-sysv_259-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libzstd1 arm64 1.5.7+dfsg-3+b1 [261 kB] Fetched 261 kB in 0s (15.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm5wmuvwf/libzstd1_1.5.7+dfsg-3+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libglx0 arm64 1.7.0-3 [31.5 kB] Fetched 31.5 kB in 0s (1902 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9eh2pb3r/libglx0_1.7.0-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dash arm64 0.5.12-12 [95.6 kB] Fetched 95.6 kB in 0s (5796 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp98qos4dw/dash_0.5.12-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxcursor1 arm64 1:1.2.3-1+b1 [39.4 kB] Fetched 39.4 kB in 0s (2439 kB/s) dpkg-name: info: moved 'libxcursor1_1%3a1.2.3-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpa6xrchwk/libxcursor1_1.2.3-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Fetched 14.7 kB in 0s (894 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6l7nbwyy/libhtml-tagset-perl_3.24-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcrypt1 arm64 1:4.5.1-1 [93.9 kB] Fetched 93.9 kB in 0s (5708 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.5.1-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp_mgmyyok/libcrypt1_4.5.1-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhdf5-310 arm64 1.14.5+repack-4 [1177 kB] Fetched 1177 kB in 0s (44.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp033oiz26/libhdf5-310_1.14.5+repack-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 wdiff arm64 1.2.2-9 [122 kB] Fetched 122 kB in 0s (1991 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7zrkrf7_/wdiff_1.2.2-9_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libmagic-dev arm64 1:5.46-5+b1 [117 kB] Fetched 117 kB in 0s (1767 kB/s) dpkg-name: info: moved 'libmagic-dev_1%3a5.46-5+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmp4yi4k_kv/libmagic-dev_5.46-5+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 maven-repo-helper all 1.12 [136 kB] Fetched 136 kB in 0s (2328 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjf1iomv6/maven-repo-helper_1.12_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (538 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3pbriae0/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 coreutils arm64 9.7-3 [2949 kB] Fetched 2949 kB in 0s (63.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphv64o0yt/coreutils_9.7-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-4 [293 kB] Fetched 293 kB in 0s (15.4 MB/s) dpkg-name: info: moved 'libjpeg62-turbo-dev_1%3a2.1.5-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpouodmr5i/libjpeg62-turbo-dev_2.1.5-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dpkg arm64 1.23.3 [1501 kB] Fetched 1501 kB in 0s (52.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp42hvsgv3/dpkg_1.23.3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 openjdk-21-jdk arm64 21.0.10~6ea-1 [3569 kB] Fetched 3569 kB in 0s (71.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp795py10a/openjdk-21-jdk_21.0.10~6ea-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Fetched 10.7 kB in 0s (647 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc8t_6vwc/libhttp-date-perl_6.06-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gcc-15 arm64 15.2.0-12 [519 kB] Fetched 519 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7zn46rrt/gcc-15_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Fetched 12.9 kB in 0s (459 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd26ldufl/libwww-robotrules-perl_6.02-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Fetched 13.1 kB in 0s (139 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgknwtn82/libhttp-negotiate-perl_6.01-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Fetched 150 kB in 0s (8257 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoxxk0xay/libuv1t64_1.51.0-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libavahi-common-data arm64 0.8-17 [113 kB] Fetched 113 kB in 0s (6471 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmpsmuwe4/libavahi-common-data_0.8-17_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-12 [10.1 MB] Fetched 10.1 MB in 0s (117 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzzppyicy/cpp-15-aarch64-linux-gnu_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-2 [40.3 kB] Fetched 40.3 kB in 0s (2282 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8b4red5c/libpipeline1_1.5.8-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 cmake-data all 4.2.1-2 [2555 kB] Fetched 2555 kB in 0s (65.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4p8a6gqo/cmake-data_4.2.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhwasan0 arm64 15.2.0-12 [1479 kB] Fetched 1479 kB in 0s (51.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6u9ew7qv/libhwasan0_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libglvnd0 arm64 1.7.0-3 [41.5 kB] Fetched 41.5 kB in 0s (2545 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpagifc00p/libglvnd0_1.7.0-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libjansson4 arm64 2.14-2+b4 [38.9 kB] Fetched 38.9 kB in 0s (1732 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpro3_fsj8/libjansson4_2.14-2+b4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxcb-xfixes0 arm64 1.17.0-2+b2 [109 kB] Fetched 109 kB in 0s (6667 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8ecxweax/libxcb-xfixes0_1.17.0-2+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcairo-gobject2 arm64 1.18.4-3 [130 kB] Fetched 130 kB in 0s (7484 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptbtslbgy/libcairo-gobject2_1.18.4-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Fetched 69.0 kB in 0s (4229 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpedl8ka12/libuchardet0_0.0.8-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.098-1 [229 kB] Fetched 229 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphsb5e6ob/libio-socket-ssl-perl_2.098-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Fetched 35.3 kB in 0s (2200 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjoo5kcpe/libpkgconf3_1.8.1-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 bison arm64 2:3.8.2+dfsg-1+b2 [1149 kB] Fetched 1149 kB in 0s (45.7 MB/s) dpkg-name: info: moved 'bison_2%3a3.8.2+dfsg-1+b2_arm64.deb' to '/srv/rebuilderd/tmp/tmpercwuio3/bison_3.8.2+dfsg-1+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Fetched 16.2 kB in 0s (1008 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5z4xi85y/libio-html-perl_1.004-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (6279 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpggvlr9il/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.22.1-2 [16.1 kB] Fetched 16.1 kB in 0s (1024 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu7uj_lg4/libkrb5-dev_1.22.1-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.11-1+b1 [2060 kB] Fetched 2060 kB in 0s (62.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpowu5xjnx/python3.13-minimal_3.13.11-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Fetched 26.1 kB in 0s (1216 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9d9rmgx8/pkgconf_1.8.1-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Fetched 33.0 kB in 0s (1674 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt2v5etib/python3-inflect_7.5.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5+b1 [103 kB] Fetched 103 kB in 0s (3690 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmp3zg9u_93/libmagic1t64_5.46-5+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (789 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmp7wuhb_6p/libaudit-common_4.1.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-3 [323 kB] Fetched 323 kB in 0s (16.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpht5soeic/libnet-ssleay-perl_1.94-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b2 [917 kB] Fetched 917 kB in 0s (39.0 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b2_arm64.deb' to '/srv/rebuilderd/tmp/tmpdd_clm4p/zlib1g-dev_1.3.dfsg+really1.3.1-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Fetched 235 kB in 0s (13.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnks3qifm/libssh2-1t64_1.11.1-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libstdc++-15-dev arm64 15.2.0-12 [2348 kB] Fetched 2348 kB in 0s (66.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaud1wux1/libstdc++-15-dev_15.2.0-12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gtk-update-icon-cache arm64 4.20.3+ds-3 [52.9 kB] Fetched 52.9 kB in 0s (3292 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp24rnw306/gtk-update-icon-cache_4.20.3+ds-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libnss3 arm64 2:3.120-1 [1288 kB] Fetched 1288 kB in 0s (48.6 MB/s) dpkg-name: info: moved 'libnss3_2%3a3.120-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp7hwcqy8b/libnss3_3.120-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5+b1 [633 kB] Fetched 633 kB in 0s (28.0 MB/s) dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-5+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpf130c45w/libgmp-dev_6.3.0+dfsg-5+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 ncurses-base all 6.6+20251231-1 [277 kB] Fetched 277 kB in 0s (14.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw5q1jr4e/ncurses-base_6.6+20251231-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-ossl-dev arm64 1.16.0-1 [27.6 kB] Fetched 27.6 kB in 0s (1680 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr65ootiy/libngtcp2-crypto-ossl-dev_1.16.0-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libudev1 arm64 259-1 [148 kB] Fetched 148 kB in 0s (8850 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuxs8cz8s/libudev1_259-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 8276 B in 0s (504 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvpawjqwl/python3-jaraco.context_6.0.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libfile-dirlist-perl all 0.05-3 [7600 B] Fetched 7600 B in 0s (476 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsqo6y6ij/libfile-dirlist-perl_0.05-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (1413 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi2farwpi/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+26 [217 kB] Fetched 217 kB in 0s (11.8 MB/s) dpkg-name: info: moved 'x11-common_1%3a7.7+26_all.deb' to '/srv/rebuilderd/tmp/tmplksch6pu/x11-common_7.7+26_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxcomposite1 arm64 1:0.4.6-1+b1 [16.7 kB] Fetched 16.7 kB in 0s (1050 kB/s) dpkg-name: info: moved 'libxcomposite1_1%3a0.4.6-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmp_fi0ofjm/libxcomposite1_0.4.6-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcolord2 arm64 1.4.8-2 [127 kB] Fetched 127 kB in 0s (7593 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa6j4yffx/libcolord2_1.4.8-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libwww-perl all 6.81-1 [186 kB] Fetched 186 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg_rwtjrr/libwww-perl_6.81-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 ncurses-bin arm64 6.6+20251231-1 [438 kB] Fetched 438 kB in 0s (22.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp31v0xriy/ncurses-bin_6.6+20251231-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gcc arm64 4:15.2.0-4 [5156 B] Fetched 5156 B in 0s (329 kB/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpp_7cg_lw/gcc_15.2.0-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 binutils arm64 2.45.50.20251209-1 [278 kB] Fetched 278 kB in 0s (15.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfqv7m6i0/binutils_2.45.50.20251209-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libseccomp2 arm64 2.6.0-2+b1 [50.9 kB] Fetched 50.9 kB in 0s (3169 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp55zxn0_r/libseccomp2_2.6.0-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gzip arm64 1.13-1 [135 kB] Fetched 135 kB in 0s (7965 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptrosnqre/gzip_1.13-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Fetched 12.4 kB in 0s (776 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn21qj2iy/libfile-listing-perl_6.16-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libatk-bridge2.0-0t64 arm64 2.59.0-1 [65.3 kB] Fetched 65.3 kB in 0s (4080 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkbcxcgdm/libatk-bridge2.0-0t64_2.59.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libwayland-cursor0 arm64 1.24.0-2+b1 [12.2 kB] Fetched 12.2 kB in 0s (781 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6whtnket/libwayland-cursor0_1.24.0-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Fetched 494 kB in 0s (24.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp62vplgjb/autoconf_2.72-3.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4+b1 [108 kB] Fetched 108 kB in 0s (6200 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpikj2nsc4/libidn2-0_2.3.8-4+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgpg-error0 arm64 1.58-1+b1 [84.8 kB] Fetched 84.8 kB in 0s (5110 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqnwxsz4x/libgpg-error0_1.58-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Fetched 224 kB in 0s (12.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnkggl3kb/python3-pkg-resources_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 binutils-aarch64-linux-gnu arm64 2.45.50.20251209-1 [858 kB] Fetched 858 kB in 0s (36.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8gtowph_/binutils-aarch64-linux-gnu_2.45.50.20251209-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libepoxy0 arm64 1.5.10-2+b1 [202 kB] Fetched 202 kB in 0s (9238 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfhog89n6/libepoxy0_1.5.10-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Fetched 211 kB in 0s (12.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4hg4ao0i/libhtml-tree-perl_5.07-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Fetched 71.7 kB in 0s (4358 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt8l0ae3o/libnghttp2-14_1.64.0-1.1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.17-1 [152 kB] Fetched 152 kB in 0s (8312 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzi2k14ez/liblcms2-2_2.17-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxkbcommon0 arm64 1.12.3-1 [135 kB] Fetched 135 kB in 0s (7919 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphxl5w70x/libxkbcommon0_1.12.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3+b1 [168 kB] Fetched 168 kB in 0s (9964 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvpio9kz9/libreadline8t64_8.3-3+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260116T142445Z forky/main arm64 libc6 arm64 2.42-7 [1462 kB] Fetched 1462 kB in 0s (52.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp01v4akax/libc6_2.42-7_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Fetched 489 kB in 0s (27.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzpqg0rq3/fonts-dejavu-mono_2.37-8_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 hdf5-helpers arm64 1.14.5+repack-4 [26.7 kB] Fetched 26.7 kB in 0s (1547 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaamv1nsj/hdf5-helpers_1.14.5+repack-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2+b1 [459 kB] Fetched 459 kB in 0s (23.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpohc13i5v/libunistring5_1.3-2+b1_arm64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture arm64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_arm64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpvc_emjwi/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture arm64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.7z1xEXX4Eq as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.7z1xEXX4Eq 127.0.0.1 - - [18/Jan/2026 05:53:58] code 404, message File not found 127.0.0.1 - - [18/Jan/2026 05:53:58] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:37035 ./ InRelease 127.0.0.1 - - [18/Jan/2026 05:53:58] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:37035 ./ Release [462 B] 127.0.0.1 - - [18/Jan/2026 05:53:58] code 404, message File not found 127.0.0.1 - - [18/Jan/2026 05:53:58] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:37035 ./ Release.gpg 127.0.0.1 - - [18/Jan/2026 05:53:58] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:37035 ./ Packages [600 kB] Fetched 601 kB in 0s (15.6 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./gcc-15-base_15.2.0-12_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libc-gconv-modules-extra_2.42-7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libc6_2.42-7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libgcc-s1_15.2.0-12_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./mawk_1.3.4.20250131-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./base-files_14_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libtinfo6_6.6%2b20251231-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./debianutils_5.23.2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./bash_5.3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libacl1_2.3.2-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libattr1_2.5.2-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libcap2_2.75-10%2bb5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libgmp10_6.3.0%2bdfsg-5%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libpcre2-8-0_10.46-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libselinux1_3.9-4%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libzstd1_1.5.7%2bdfsg-3%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libssl3t64_3.5.4-1%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./openssl-provider-legacy_3.5.4-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libsystemd0_259-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./coreutils_9.7-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./dash_0.5.12-12_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./diffutils_3.12-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libbz2-1.0_1.0.8-6%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./liblzma5_5.8.2-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libmd0_1.1.0-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./tar_1.35%2bdfsg-3.1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./dpkg_1.23.3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./findutils_4.10.0-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./grep_3.12-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./gzip_1.13-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./hostname_3.25_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./ncurses-bin_6.6%2b20251231-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libcrypt1_4.5.1-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./perl-base_5.40.1-7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./sed_4.9-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libaudit-common_4.1.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libcap-ng0_0.8.5-4%2bb2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libaudit1_4.1.2-1%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libdb5.3t64_5.3.28%2bdfsg2-11_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./debconf_1.5.91_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libpam0g_1.7.0-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libpam-modules-bin_1.7.0-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libpam-modules_1.7.0-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libpam-runtime_1.7.0-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libblkid1_2.41.3-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libmount1_2.41.3-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libsmartcols1_2.41.3-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libudev1_259-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libuuid1_2.41.3-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./util-linux_2.41.3-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libdebconfclient0_0.282%2bb2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./base-passwd_3.6.8_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./init-system-helpers_1.69_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./libc-bin_2.42-7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./ncurses-base_6.6%2b20251231-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:53:59] "GET /./sysvinit-utils_3.15-6_arm64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.7z1xEXX4Eq 127.0.0.1 - - [18/Jan/2026 05:54:02] code 404, message File not found 127.0.0.1 - - [18/Jan/2026 05:54:02] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:37035 ./ InRelease 127.0.0.1 - - [18/Jan/2026 05:54:02] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:37035 ./ Release 127.0.0.1 - - [18/Jan/2026 05:54:02] code 404, message File not found 127.0.0.1 - - [18/Jan/2026 05:54:02] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:37035 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.7z1xEXX4Eq usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [18/Jan/2026 05:54:11] "GET /./mount_2.41.3-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:11] "GET /./libsystemd-shared_259-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:11] "GET /./systemd_259-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:11] "GET /./systemd-sysv_259-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:11] "GET /./libdbus-1-3_1.16.2-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:11] "GET /./dbus-bin_1.16.2-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:11] "GET /./dbus-session-bus-common_1.16.2-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:11] "GET /./libapparmor1_4.1.3-1_arm64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./libconfig-inifiles-perl_3.000003-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./libfile-dirlist-perl_0.05-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./libfile-homedir-perl_1.006-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./libio-string-perl_1.08-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./patchutils_0.4.3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./gosop_1.1.0-3%2bb2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./wdiff_1.2.2-9_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./devscripts_2.26.4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./dh-python_7.20251231_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./python3-typing-extensions_4.15.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./libre2-dev_20250805-1%2bb2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./python3-more-itertools_10.8.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./python3-jaraco.functools_4.1.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./liblzma-dev_5.8.2-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./python3.14_3.14.2-1%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./python3-all_3.13.9-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./libncbi-vdb-dev_3.2.1%2bdfsg-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./python3-autocommand_2.2.2-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./python3-typeguard_4.4.4-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./python3-inflect_7.5.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./python3-jaraco.context_6.0.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./python3-pkg-resources_78.1.1-0.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./python3-jaraco.text_4.0.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./python3-zipp_3.23.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./python3-setuptools_78.1.1-0.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./openjdk-21-jdk_21.0.10%7e6ea-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./default-jdk_1.21-76_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./javahelper_0.81_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./libxml2-dev_2.15.1%2bdfsg-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./libsam-extract-dev_3.2.1%2bdfsg-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./libmagic-dev_5.46-5%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./maven-repo-helper_1.12_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [18/Jan/2026 05:54:14] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpvc_emjwi/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.7z1xEXX4Eq Reading package lists... Building dependency tree... Reading state information... dbus-system-bus-common is already the newest version (1.16.2-2). dbus-system-bus-common set to manually installed. shared-mime-info is already the newest version (2.4-5+b3). shared-mime-info set to manually installed. libsensors-config is already the newest version (1:3.6.2-2). libsensors-config set to manually installed. libfile-touch-perl is already the newest version (0.12-2). libfile-touch-perl set to manually installed. libkadm5srv-mit12 is already the newest version (1.22.1-2). libkadm5srv-mit12 set to manually installed. libpython3.14-stdlib is already the newest version (3.14.2-1+b1). libpython3.14-stdlib set to manually installed. grep is already the newest version (3.12-1). libaudit1 is already the newest version (1:4.1.2-1+b1). dctrl-tools is already the newest version (2.24-3+b1). dctrl-tools set to manually installed. libgssapi-krb5-2 is already the newest version (1.22.1-2). libgssapi-krb5-2 set to manually installed. libnghttp3-dev is already the newest version (1.12.0-1). libnghttp3-dev set to manually installed. autopoint is already the newest version (0.23.2-1). autopoint set to manually installed. libgdbm6t64 is already the newest version (1.26-1). libgdbm6t64 set to manually installed. libksba8 is already the newest version (1.6.7-2+b2). libksba8 set to manually installed. libbrotli-dev is already the newest version (1.1.0-2+b9). libbrotli-dev set to manually installed. gettext-base is already the newest version (0.23.2-1). gettext-base set to manually installed. liblz4-1 is already the newest version (1.10.0-6). liblz4-1 set to manually installed. readline-common is already the newest version (8.3-3). readline-common set to manually installed. libencode-locale-perl is already the newest version (1.05-3). libencode-locale-perl set to manually installed. d-shlibs is already the newest version (0.109). d-shlibs set to manually installed. libapt-pkg7.0 is already the newest version (3.1.13). libapt-pkg7.0 set to manually installed. libbz2-dev is already the newest version (1.0.8-6+b1). libbz2-dev set to manually installed. libgnutls28-dev is already the newest version (3.8.11-3). libgnutls28-dev set to manually installed. sysvinit-utils is already the newest version (3.15-6). libcairo2 is already the newest version (1.18.4-3). libcairo2 set to manually installed. libcom-err2 is already the newest version (1.47.2-3+b8). libcom-err2 set to manually installed. libxi6 is already the newest version (2:1.8.2-2). libxi6 set to manually installed. libxcb-glx0 is already the newest version (1.17.0-2+b2). libxcb-glx0 set to manually installed. libwayland-egl1 is already the newest version (1.24.0-2+b1). libwayland-egl1 set to manually installed. nettle-dev is already the newest version (3.10.2-1). nettle-dev set to manually installed. base-files is already the newest version (14). at-spi2-common is already the newest version (2.59.0-1). at-spi2-common set to manually installed. libatk1.0-0t64 is already the newest version (2.59.0-1). libatk1.0-0t64 set to manually installed. libpcre2-8-0 is already the newest version (10.46-1). libclass-method-modifiers-perl is already the newest version (2.15-1). libclass-method-modifiers-perl set to manually installed. gettext is already the newest version (0.23.2-1). gettext set to manually installed. m4 is already the newest version (1.4.20-2). m4 set to manually installed. libldap2 is already the newest version (2.6.10+dfsg-1). libldap2 set to manually installed. libffi8 is already the newest version (3.5.2-3+b1). libffi8 set to manually installed. libmoo-perl is already the newest version (2.005005-1). libmoo-perl set to manually installed. fonts-dejavu-core is already the newest version (2.37-8). fonts-dejavu-core set to manually installed. libsmartcols1 is already the newest version (2.41.3-3). dh-autoreconf is already the newest version (21). dh-autoreconf set to manually installed. libjpeg-dev is already the newest version (1:2.1.5-4). libjpeg-dev set to manually installed. libkrb5support0 is already the newest version (1.22.1-2). libkrb5support0 set to manually installed. libgssrpc4t64 is already the newest version (1.22.1-2). libgssrpc4t64 set to manually installed. libhdf5-dev is already the newest version (1.14.5+repack-4). libhdf5-dev set to manually installed. cpp is already the newest version (4:15.2.0-4). cpp set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1+b1). rpcsvc-proto set to manually installed. libx11-6 is already the newest version (2:1.8.12-1+b1). libx11-6 set to manually installed. dbus-session-bus-common is already the newest version (1.16.2-2). dbus-session-bus-common set to manually installed. debhelper is already the newest version (13.29). debhelper set to manually installed. libstdc++6 is already the newest version (15.2.0-12). libstdc++6 set to manually installed. libdynaloader-functions-perl is already the newest version (0.004-2). libdynaloader-functions-perl set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5+b1). libngtcp2-dev is already the newest version (1.16.0-1). libngtcp2-dev set to manually installed. libfile-which-perl is already the newest version (1.27-2). libfile-which-perl set to manually installed. libxdamage1 is already the newest version (1:1.1.6-1+b3). libxdamage1 set to manually installed. libimport-into-perl is already the newest version (1.002005-2). libimport-into-perl set to manually installed. libsub-quote-perl is already the newest version (2.006009-1). libsub-quote-perl set to manually installed. libmbedtls-dev is already the newest version (3.6.5-0.1). libmbedtls-dev set to manually installed. libexpat1 is already the newest version (2.7.3-1). libexpat1 set to manually installed. binutils-common is already the newest version (2.45.50.20251209-1). binutils-common set to manually installed. libblkid1 is already the newest version (2.41.3-3). libhdf5-hl-cpp-310 is already the newest version (1.14.5+repack-4). libhdf5-hl-cpp-310 set to manually installed. gcc-15-aarch64-linux-gnu is already the newest version (15.2.0-12). gcc-15-aarch64-linux-gnu set to manually installed. groff-base is already the newest version (1.23.0-10). groff-base set to manually installed. libatomic1 is already the newest version (15.2.0-12). libatomic1 set to manually installed. librtmp-dev is already the newest version (2.4+20151223.gitfa8646d.1-3). librtmp-dev set to manually installed. libelf1t64 is already the newest version (0.194-1). libelf1t64 set to manually installed. libcurl4t64 is already the newest version (8.18.0-2). libcurl4t64 set to manually installed. libwayland-client0 is already the newest version (1.24.0-2+b1). libwayland-client0 set to manually installed. libncbi-vdb3 is already the newest version (3.2.1+dfsg-2). libncbi-vdb3 set to manually installed. libsz2 is already the newest version (1.1.4-2+b1). libsz2 set to manually installed. libidn2-dev is already the newest version (2.3.8-4+b1). libidn2-dev set to manually installed. libctf-nobfd0 is already the newest version (2.45.50.20251209-1). libctf-nobfd0 set to manually installed. jarwrapper is already the newest version (0.81). jarwrapper set to manually installed. libre2-11 is already the newest version (20250805-1+b2). libre2-11 set to manually installed. libz3-4 is already the newest version (4.13.3-1). libz3-4 set to manually installed. dpkg-dev is already the newest version (1.23.3). dpkg-dev set to manually installed. libgbm1 is already the newest version (25.3.3-1). libgbm1 set to manually installed. libgdk-pixbuf-2.0-0 is already the newest version (2.44.4+dfsg-1). libgdk-pixbuf-2.0-0 set to manually installed. tar is already the newest version (1.35+dfsg-3.1). dconf-service is already the newest version (0.49.0-4). dconf-service set to manually installed. libtimedate-perl is already the newest version (2.3300-2). libtimedate-perl set to manually installed. hicolor-icon-theme is already the newest version (0.18-2). hicolor-icon-theme set to manually installed. libjbig0 is already the newest version (2.1-6.1+b3). libjbig0 set to manually installed. libb-hooks-op-check-perl is already the newest version (0.22-3+b2). libb-hooks-op-check-perl set to manually installed. default-jre is already the newest version (2:1.21-76). default-jre set to manually installed. sqv is already the newest version (1.3.0-5). sqv set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b9). libbrotli1 set to manually installed. libgcc-s1 is already the newest version (15.2.0-12). libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-10). libsasl2-2 set to manually installed. libasound2t64 is already the newest version (1.2.15.1-1). libasound2t64 set to manually installed. perl-openssl-defaults is already the newest version (7+b2). perl-openssl-defaults set to manually installed. libpsl-dev is already the newest version (0.21.2-1.1+b2). libpsl-dev set to manually installed. libsframe2 is already the newest version (2.45.50.20251209-1). libsframe2 set to manually installed. liblerc4 is already the newest version (4.0.0+ds-5+b1). liblerc4 set to manually installed. autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. fontconfig is already the newest version (2.17.1-3). fontconfig set to manually installed. gcc-15-base is already the newest version (15.2.0-12). mount is already the newest version (2.41.3-3). mount set to manually installed. cpp-aarch64-linux-gnu is already the newest version (4:15.2.0-4). cpp-aarch64-linux-gnu set to manually installed. default-jdk-headless is already the newest version (2:1.21-76). default-jdk-headless set to manually installed. g++ is already the newest version (4:15.2.0-4). g++ set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-3). librtmp1 set to manually installed. libdebconfclient0 is already the newest version (0.282+b2). krb5-multidev is already the newest version (1.22.1-2). krb5-multidev set to manually installed. libhttp-cookies-perl is already the newest version (6.11-1). libhttp-cookies-perl set to manually installed. findutils is already the newest version (4.10.0-3). libubsan1 is already the newest version (15.2.0-12). libubsan1 set to manually installed. libncbi-wvdb-dev is already the newest version (3.2.1+dfsg-2). libncbi-wvdb-dev set to manually installed. fastjar is already the newest version (2:0.98-7+b1). fastjar set to manually installed. libfribidi0 is already the newest version (1.0.16-5). libfribidi0 set to manually installed. libfontconfig1 is already the newest version (2.17.1-3). libfontconfig1 set to manually installed. dconf-gsettings-backend is already the newest version (0.49.0-4). dconf-gsettings-backend set to manually installed. gpg-agent is already the newest version (2.4.8-5). gpg-agent set to manually installed. libxshmfence1 is already the newest version (1.3.3-1). libxshmfence1 set to manually installed. libhdf5-cpp-310 is already the newest version (1.14.5+repack-4). libhdf5-cpp-310 set to manually installed. openjdk-21-jre is already the newest version (21.0.10~6ea-1). openjdk-21-jre set to manually installed. libkdb5-10t64 is already the newest version (1.22.1-2). libkdb5-10t64 set to manually installed. libc-gconv-modules-extra is already the newest version (2.42-7). xz-utils is already the newest version (5.8.2-1). xz-utils set to manually installed. dwz is already the newest version (0.16-2). dwz set to manually installed. libproc2-0 is already the newest version (2:4.0.4-9+b1). libproc2-0 set to manually installed. libxau6 is already the newest version (1:1.0.11-1). libxau6 set to manually installed. liblwp-protocol-https-perl is already the newest version (6.14-1). liblwp-protocol-https-perl set to manually installed. comerr-dev is already the newest version (2.1-1.47.2-3+b8). comerr-dev set to manually installed. libtinfo6 is already the newest version (6.6+20251231-1). gcc-aarch64-linux-gnu is already the newest version (4:15.2.0-4). gcc-aarch64-linux-gnu set to manually installed. libabsl-dev is already the newest version (20240722.0-4). libabsl-dev set to manually installed. libssl3t64 is already the newest version (3.5.4-1+b1). libedit2 is already the newest version (3.1-20251016-1). libedit2 set to manually installed. libfreetype6 is already the newest version (2.14.1+dfsg-2). libfreetype6 set to manually installed. libharfbuzz0b is already the newest version (12.3.0-4). libharfbuzz0b set to manually installed. mesa-libgallium is already the newest version (25.3.3-1). mesa-libgallium set to manually installed. libxcb-render0 is already the newest version (1.17.0-2+b2). libxcb-render0 set to manually installed. libsam-extract3 is already the newest version (3.2.1+dfsg-2). libsam-extract3 set to manually installed. util-linux is already the newest version (2.41.3-3). libngtcp2-crypto-ossl0 is already the newest version (1.16.0-1). libngtcp2-crypto-ossl0 set to manually installed. libnghttp3-9 is already the newest version (1.12.0-1). libnghttp3-9 set to manually installed. libtsan2 is already the newest version (15.2.0-12). libtsan2 set to manually installed. libselinux1 is already the newest version (3.9-4+b1). libglib2.0-0t64 is already the newest version (2.86.3-4). libglib2.0-0t64 set to manually installed. python3.13 is already the newest version (3.13.11-1+b1). python3.13 set to manually installed. bash is already the newest version (5.3-1). libdatrie1 is already the newest version (0.2.14-1). libdatrie1 set to manually installed. xkb-data is already the newest version (2.46-2). xkb-data set to manually installed. linux-libc-dev is already the newest version (6.18.3-1). linux-libc-dev set to manually installed. libtool is already the newest version (2.5.4-9). libtool set to manually installed. libmagic-mgc is already the newest version (1:5.46-5+b1). libmagic-mgc set to manually installed. libassuan9 is already the newest version (3.0.2-2+b1). libassuan9 set to manually installed. libmbedx509-7 is already the newest version (3.6.5-0.1). libmbedx509-7 set to manually installed. libarchive13t64 is already the newest version (3.8.5-1). libarchive13t64 set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1+b2). libpsl5t64 set to manually installed. libxcb-present0 is already the newest version (1.17.0-2+b2). libxcb-present0 set to manually installed. libxcb-sync1 is already the newest version (1.17.0-2+b2). libxcb-sync1 set to manually installed. libkadm5clnt-mit12 is already the newest version (1.22.1-2). libkadm5clnt-mit12 set to manually installed. libgnutls30t64 is already the newest version (3.8.11-3). libgnutls30t64 set to manually installed. devscripts is already the newest version (2.26.4). devscripts set to manually installed. libjsoncpp26 is already the newest version (1.9.6-5). libjsoncpp26 set to manually installed. java-common is already the newest version (0.76). java-common set to manually installed. openjdk-21-jre-headless is already the newest version (21.0.10~6ea-1). openjdk-21-jre-headless set to manually installed. dh-python is already the newest version (7.20251231). dh-python set to manually installed. libclone-perl is already the newest version (0.47-1+b1). libclone-perl set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. diffutils is already the newest version (1:3.12-1). libgfortran5 is already the newest version (15.2.0-12). libgfortran5 set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b2). libpam-systemd is already the newest version (259-1). libpam-systemd set to manually installed. libp11-kit0 is already the newest version (0.25.10-1+b1). libp11-kit0 set to manually installed. libxfixes3 is already the newest version (1:6.0.0-2+b5). libxfixes3 set to manually installed. libxcb-randr0 is already the newest version (1.17.0-2+b2). libxcb-randr0 set to manually installed. libdrm2 is already the newest version (2.4.129-1). libdrm2 set to manually installed. libgnutls-openssl27t64 is already the newest version (3.8.11-3). libgnutls-openssl27t64 set to manually installed. libwebp7 is already the newest version (1.5.0-0.1). libwebp7 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). libaec0 is already the newest version (1.1.4-2+b1). libaec0 set to manually installed. libtasn1-6-dev is already the newest version (4.20.0-2+b1). libtasn1-6-dev set to manually installed. fontconfig-config is already the newest version (2.17.1-3). fontconfig-config set to manually installed. libc-dev-bin is already the newest version (2.42-7). libc-dev-bin set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-11). perl-modules-5.40 is already the newest version (5.40.1-7). perl-modules-5.40 set to manually installed. default-jre-headless is already the newest version (2:1.21-76). default-jre-headless set to manually installed. base-passwd is already the newest version (3.6.8). python3-typing-extensions is already the newest version (4.15.0-2). python3-typing-extensions set to manually installed. libpangoft2-1.0-0 is already the newest version (1.57.0-1). libpangoft2-1.0-0 set to manually installed. libhogweed6t64 is already the newest version (3.10.2-1). libhogweed6t64 set to manually installed. mawk is already the newest version (1.3.4.20250131-2). sed is already the newest version (4.9-2+b1). ca-certificates-java is already the newest version (20240118). ca-certificates-java set to manually installed. libre2-dev is already the newest version (20250805-1+b2). libre2-dev set to manually installed. libdrm-common is already the newest version (2.4.129-1). libdrm-common set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. libcap2 is already the newest version (1:2.75-10+b5). python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. g++-15-aarch64-linux-gnu is already the newest version (15.2.0-12). g++-15-aarch64-linux-gnu set to manually installed. gosop is already the newest version (1.1.0-3+b2). gosop set to manually installed. libdrm-amdgpu1 is already the newest version (2.4.129-1). libdrm-amdgpu1 set to manually installed. libpython3-stdlib is already the newest version (3.13.9-3). libpython3-stdlib set to manually installed. cmake is already the newest version (4.2.1-2). cmake set to manually installed. libattr1 is already the newest version (1:2.5.2-3). libvulkan1 is already the newest version (1.4.335.0-1). libvulkan1 set to manually installed. automake is already the newest version (1:1.18.1-3). automake set to manually installed. debianutils is already the newest version (5.23.2). patchutils is already the newest version (0.4.3-1). patchutils set to manually installed. perl is already the newest version (5.40.1-7). perl set to manually installed. libapparmor1 is already the newest version (4.1.3-1). libapparmor1 set to manually installed. libgraphite2-3 is already the newest version (1.3.14-11+b1). libgraphite2-3 set to manually installed. libglx-mesa0 is already the newest version (25.3.3-1). libglx-mesa0 set to manually installed. libparams-classify-perl is already the newest version (0.015-2+b4). libparams-classify-perl set to manually installed. liblzma-dev is already the newest version (5.8.2-2). liblzma-dev set to manually installed. libnpth0t64 is already the newest version (1.8-3+b1). libnpth0t64 set to manually installed. pkgconf-bin is already the newest version (1.8.1-4). pkgconf-bin set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. libnghttp2-dev is already the newest version (1.64.0-1.1+b1). libnghttp2-dev set to manually installed. libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-5+b1). libgmpxx4ldbl set to manually installed. libcloudproviders0 is already the newest version (0.4.0-1). libcloudproviders0 set to manually installed. libfile-homedir-perl is already the newest version (1.006-2). libfile-homedir-perl set to manually installed. dbus-bin is already the newest version (1.16.2-2+b1). dbus-bin set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. libunbound8 is already the newest version (1.24.2-1). libunbound8 set to manually installed. hostname is already the newest version (3.25). libgtk-3-0t64 is already the newest version (3.24.51-4). libgtk-3-0t64 set to manually installed. libxxhash0 is already the newest version 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installed. cpp-15 is already the newest version (15.2.0-12). cpp-15 set to manually installed. libpython3.14-minimal is already the newest version (3.14.2-1+b1). libpython3.14-minimal set to manually installed. libnet-http-perl is already the newest version (6.24-1). libnet-http-perl set to manually installed. python3-all is already the newest version (3.13.9-3). python3-all set to manually installed. g++-15 is already the newest version (15.2.0-12). g++-15 set to manually installed. libasound2-data is already the newest version (1.2.15.1-1). libasound2-data set to manually installed. po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. libpython3.13-stdlib is already the newest version (3.13.11-1+b1). libpython3.13-stdlib set to manually installed. libperl5.40 is already the newest version (5.40.1-7). libperl5.40 set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. libncbi-vdb-dev is already the newest version (3.2.1+dfsg-2). libncbi-vdb-dev set to manually installed. python3 is already the newest version (3.13.9-3). python3 set to manually installed. libxcb-dri3-0 is already the newest version (1.17.0-2+b2). libxcb-dri3-0 set to manually installed. file is already the newest version (1:5.46-5+b1). file set to manually installed. libaec-dev is already the newest version (1.1.4-2+b1). libaec-dev set to manually installed. libevent-2.1-7t64 is already the newest version (2.1.12-stable-10+b2). libevent-2.1-7t64 set to manually installed. libgl1-mesa-dri is already the newest version (25.3.3-1). libgl1-mesa-dri set to manually installed. libk5crypto3 is already the newest version (1.22.1-2). libk5crypto3 set to manually installed. python3-setuptools is already the newest version (78.1.1-0.1). python3-setuptools set to manually installed. liblwp-mediatypes-perl is already the newest version (6.04-2). liblwp-mediatypes-perl set to manually installed. libasan8 is already the newest version (15.2.0-12). libasan8 set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1). libgdbm-compat4t64 set to manually installed. libxrender1 is already the newest version (1:0.9.12-1+b1). libxrender1 set to manually installed. libdpkg-perl is already the newest version (1.23.3). libdpkg-perl set to manually installed. libdevel-callchecker-perl is already the newest version (0.009-2). libdevel-callchecker-perl set to manually installed. libxext6 is already the newest version (2:1.3.4-1+b4). libxext6 set to manually installed. libtry-tiny-perl is already the newest version (0.32-1). libtry-tiny-perl set to manually installed. tzdata is already the newest version (2025c-3). tzdata set to manually installed. dbus is already the newest version (1.16.2-2+b1). dbus set to manually installed. flex is already the newest version (2.6.4-8.2+b5). flex set to manually installed. adwaita-icon-theme is already the newest version (49.0-1). adwaita-icon-theme set 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newest version (4.20.0-2+b1). libtasn1-6 set to manually installed. libdbus-1-3 is already the newest version (1.16.2-2+b1). libdbus-1-3 set to manually installed. libkrb5-3 is already the newest version (1.22.1-2). libkrb5-3 set to manually installed. libpcsclite1 is already the newest version (2.4.1-1). libpcsclite1 set to manually installed. libmpfr6 is already the newest version (4.2.2-2). libmpfr6 set to manually installed. python3.14 is already the newest version (3.14.2-1+b1). python3.14 set to manually installed. libc-bin is already the newest version (2.42-7). dbus-daemon is already the newest version (1.16.2-2+b1). dbus-daemon set to manually installed. ca-certificates is already the newest version (20250419). ca-certificates set to manually installed. libdebhelper-perl is already the newest version (13.29). libdebhelper-perl set to manually installed. g++-aarch64-linux-gnu is already the newest version (4:15.2.0-4). g++-aarch64-linux-gnu set to manually installed. libc6-dev is already the newest version (2.42-7). libc6-dev set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-10). libsasl2-modules-db set to manually installed. libxcb1 is already the newest version (1.17.0-2+b2). libxcb1 set to manually installed. apt is already the newest version (3.1.13). apt set to manually installed. libllvm21 is already the newest version (1:21.1.8-1+b1). libllvm21 set to manually installed. libmount1 is already the newest version (2.41.3-3). zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b2). libthai-data is already the newest version (0.1.30-1). libthai-data set to manually installed. libhdf5-hl-310 is already the newest version (1.14.5+repack-4). libhdf5-hl-310 set to manually installed. libngtcp2-16 is already the newest version (1.16.0-1). libngtcp2-16 set to manually installed. libsystemd0 is already the newest version (259-1). libsystemd-shared is already the newest version (259-1). libsystemd-shared set to manually installed. libpng16-16t64 is already the newest version (1.6.53-1). libpng16-16t64 set to manually installed. gpg is already the newest version (2.4.8-5). gpg set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5). libzstd-dev is already the newest version (1.5.7+dfsg-3+b1). libzstd-dev set to manually installed. perl-base is already the newest version (5.40.1-7). libdeflate0 is already the newest version (1.23-2+b1). libdeflate0 set to manually installed. python3.14-minimal is already the newest version (3.14.2-1+b1). python3.14-minimal set to manually installed. libxrandr2 is already the newest version (2:1.5.4-1+b4). libxrandr2 set to manually installed. default-jdk is already the newest version (2:1.21-76). default-jdk set to manually installed. libssh2-1-dev is already the newest version (1.11.1-1). libssh2-1-dev set to manually installed. libxinerama1 is already the newest version (2:1.1.4-3+b5). libxinerama1 set to manually installed. libpam0g is already the newest version (1.7.0-5). libavahi-client3 is already the newest version (0.8-17). libavahi-client3 set to manually installed. libssl-dev is already the newest version (3.5.4-1+b1). libssl-dev set to manually installed. javahelper is already the newest version (0.81). javahelper set to manually installed. libgif7 is already the newest version (5.2.2-1+b2). libgif7 set to manually installed. libcurl4-openssl-dev is already the newest version (8.18.0-2). libcurl4-openssl-dev set to manually installed. libhdf5-fortran-310 is already the newest version (1.14.5+repack-4). libhdf5-fortran-310 set to manually installed. libtiff6 is already the newest version (4.7.1-1). libtiff6 set to manually installed. libgcc-15-dev is already the newest version (15.2.0-12). libgcc-15-dev set to manually installed. libldap-dev is already the newest version (2.6.10+dfsg-1). libldap-dev set to manually installed. libmodule-runtime-perl is already the newest version (0.018-1). libmodule-runtime-perl set to manually installed. gpgconf is already the newest version (2.4.8-5). gpgconf set to manually installed. libmpc3 is already the newest version (1.3.1-2). libmpc3 set to manually installed. python3-autocommand is already the newest version (2.2.2-4). python3-autocommand set to manually installed. debconf is already the newest version (1.5.91). python3-more-itertools is already the newest version (10.8.0-1). python3-more-itertools set to manually installed. libctf0 is already the newest version (2.45.50.20251209-1). libctf0 set to manually installed. libsharpyuv0 is already the newest version (1.5.0-0.1). libsharpyuv0 set to manually installed. libsqlite3-0 is already the newest version (3.46.1-8). libsqlite3-0 set to manually installed. ncbi-vdb-data is already the newest version (3.2.1+dfsg-2). ncbi-vdb-data set to manually installed. libgcrypt20 is already the newest version (1.11.2-3+b1). libgcrypt20 set to manually installed. python3-typeguard is already the newest version (4.4.4-1). python3-typeguard set to manually installed. libhttp-message-perl is already the newest version (7.01-1). libhttp-message-perl set to manually installed. libpangocairo-1.0-0 is already the newest version (1.57.0-1). libpangocairo-1.0-0 set to manually installed. libuuid1 is already the newest version (2.41.3-3). pinentry-curses is already the newest version (1.3.2-3). pinentry-curses set to manually installed. libmbedtls21 is already the newest version (3.6.5-0.1). libmbedtls21 set to manually installed. libconfig-inifiles-perl is already the newest version (3.000003-4). libconfig-inifiles-perl set to manually installed. python3-zipp is already the newest version (3.23.0-1). python3-zipp set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. libncbi-wvdb3 is already the newest version (3.2.1+dfsg-2). libncbi-wvdb3 set to manually installed. libclass-xsaccessor-perl is already the newest version (1.19-4+b5). libclass-xsaccessor-perl set to manually installed. make is already the newest version (4.4.1-3). make set to manually installed. libcc1-0 is already the newest version (15.2.0-12). libcc1-0 set to manually installed. libxml2-dev is already the newest version (2.15.1+dfsg-2+b1). libxml2-dev set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. libx11-xcb1 is already the newest version (2:1.8.12-1+b1). libx11-xcb1 set to manually installed. liblsan0 is already the newest version (15.2.0-12). liblsan0 set to manually installed. libpam-runtime is already the newest version (1.7.0-5). procps is already the newest version (2:4.0.4-9+b1). procps set to manually installed. openjdk-21-jdk-headless is already the newest version (21.0.10~6ea-1). openjdk-21-jdk-headless set to manually installed. python3-minimal is already the newest version (3.13.9-3). python3-minimal set to manually installed. libmd0 is already the newest version (1.1.0-2+b1). netbase is already the newest version (6.5). netbase set to manually installed. libatspi2.0-0t64 is already the newest version (2.59.0-1). libatspi2.0-0t64 set to manually installed. libxxf86vm1 is already the newest version (1:1.1.4-2). libxxf86vm1 set to manually installed. liblzma5 is already the newest version (5.8.2-2). libgnutls-dane0t64 is already the newest version (3.8.11-3). libgnutls-dane0t64 set to manually installed. libx11-data is already the newest version (2:1.8.12-1). libx11-data set to manually installed. libgdk-pixbuf2.0-common is already the newest version (2.44.4+dfsg-1). libgdk-pixbuf2.0-common set to manually installed. libthai0 is already the newest version (0.1.30-1). libthai0 set to manually installed. libbsd0 is already the newest version (0.12.2-2+b1). libbsd0 set to manually installed. libjpeg62-turbo is already the newest version (1:2.1.5-4). libjpeg62-turbo set to manually installed. libsensors5 is already the newest version (1:3.6.2-2+b1). libsensors5 set to manually installed. libnspr4 is already the newest version (2:4.38.2-1). libnspr4 set to manually installed. libavahi-common3 is already the newest version (0.8-17). libavahi-common3 set to manually installed. libmbedcrypto16 is already the newest version (3.6.5-0.1). libmbedcrypto16 set to manually installed. libxcb-shm0 is already the newest version (1.17.0-2+b2). libxcb-shm0 set to manually installed. libpam-modules is already the newest version (1.7.0-5). binfmt-support is already the newest version (2.2.2-8). binfmt-support set to manually installed. dbus-user-session is already the newest version (1.16.2-2+b1). dbus-user-session set to manually installed. libxdmcp6 is already the newest version (1:1.1.5-2). libxdmcp6 set to manually installed. libgtk-3-common is already the newest version (3.24.51-4). libgtk-3-common set to manually installed. libdconf1 is already the newest version (0.49.0-4). libdconf1 set to 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newest version (9.7-3). libjpeg62-turbo-dev is already the newest version (1:2.1.5-4). libjpeg62-turbo-dev set to manually installed. dpkg is already the newest version (1.23.3). openjdk-21-jdk is already the newest version (21.0.10~6ea-1). openjdk-21-jdk set to manually installed. libhttp-date-perl is already the newest version (6.06-1). libhttp-date-perl set to manually installed. gcc-15 is already the newest version (15.2.0-12). gcc-15 set to manually installed. libwww-robotrules-perl is already the newest version (6.02-1). libwww-robotrules-perl set to manually installed. libhttp-negotiate-perl is already the newest version (6.01-2). libhttp-negotiate-perl set to manually installed. libuv1t64 is already the newest version (1.51.0-2). libuv1t64 set to manually installed. libavahi-common-data is already the newest version (0.8-17). libavahi-common-data set to manually installed. cpp-15-aarch64-linux-gnu is already the newest version (15.2.0-12). cpp-15-aarch64-linux-gnu set to manually installed. libpipeline1 is already the newest version (1.5.8-2). libpipeline1 set to manually installed. cmake-data is already the newest version (4.2.1-2). cmake-data set to manually installed. libhwasan0 is already the newest version (15.2.0-12). libhwasan0 set to manually installed. libglvnd0 is already the newest version (1.7.0-3). libglvnd0 set to manually installed. libjansson4 is already the newest version (2.14-2+b4). libjansson4 set to manually installed. libxcb-xfixes0 is already the newest version (1.17.0-2+b2). libxcb-xfixes0 set to manually installed. libcairo-gobject2 is already the newest version (1.18.4-3). libcairo-gobject2 set to manually installed. libuchardet0 is already the newest version (0.0.8-2). libuchardet0 set to manually installed. libio-socket-ssl-perl is already the newest version (2.098-1). libio-socket-ssl-perl set to manually installed. libpkgconf3 is already the newest version (1.8.1-4). libpkgconf3 set to manually installed. bison is already the newest version (2:3.8.2+dfsg-1+b2). bison set to manually installed. libio-html-perl is already the newest version (1.004-3). libio-html-perl set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libkrb5-dev is already the newest version (1.22.1-2). libkrb5-dev set to manually installed. python3.13-minimal is already the newest version (3.13.11-1+b1). python3.13-minimal set to manually installed. pkgconf is already the newest version (1.8.1-4). pkgconf set to manually installed. python3-inflect is already the newest version (7.5.0-1). python3-inflect set to manually installed. libmagic1t64 is already the newest version (1:5.46-5+b1). libmagic1t64 set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). libnet-ssleay-perl is already the newest version (1.94-3). libnet-ssleay-perl set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b2). zlib1g-dev set to manually installed. libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. libstdc++-15-dev is already the newest version (15.2.0-12). libstdc++-15-dev set to manually installed. gtk-update-icon-cache is already the newest version (4.20.3+ds-3). gtk-update-icon-cache set to manually installed. libnss3 is already the newest version (2:3.120-1). libnss3 set to manually installed. libgmp-dev is already the newest version (2:6.3.0+dfsg-5+b1). libgmp-dev set to manually installed. ncurses-base is already the newest version (6.6+20251231-1). libngtcp2-crypto-ossl-dev is already the newest version (1.16.0-1). libngtcp2-crypto-ossl-dev set to manually installed. libudev1 is already the newest version (259-1). python3-jaraco.context is already the newest version (6.0.1-1). python3-jaraco.context set to manually installed. libfile-dirlist-perl is already the newest version (0.05-3). libfile-dirlist-perl set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. x11-common is already the newest version (1:7.7+26). x11-common set to manually installed. libxcomposite1 is already the newest version (1:0.4.6-1+b1). libxcomposite1 set to manually installed. libcolord2 is already the newest version (1.4.8-2). libcolord2 set to manually installed. libwww-perl is already the newest version (6.81-1). libwww-perl set to manually installed. ncurses-bin is already the newest version (6.6+20251231-1). gcc is already the newest version (4:15.2.0-4). gcc set to manually installed. binutils is already the newest version (2.45.50.20251209-1). binutils set to manually installed. libseccomp2 is already the newest version (2.6.0-2+b1). libseccomp2 set to manually installed. gzip is already the newest version (1.13-1). libfile-listing-perl is already the newest version (6.16-1). libfile-listing-perl set to manually installed. libatk-bridge2.0-0t64 is already the newest version (2.59.0-1). libatk-bridge2.0-0t64 set to manually installed. libwayland-cursor0 is already the newest version (1.24.0-2+b1). libwayland-cursor0 set to manually installed. autoconf is already the newest version (2.72-3.1). autoconf set to manually installed. libidn2-0 is already the newest version (2.3.8-4+b1). libidn2-0 set to manually installed. libgpg-error0 is already the newest version (1.58-1+b1). libgpg-error0 set to manually installed. python3-pkg-resources is already the newest version (78.1.1-0.1). python3-pkg-resources set to manually installed. binutils-aarch64-linux-gnu is already the newest version (2.45.50.20251209-1). binutils-aarch64-linux-gnu set to manually installed. libepoxy0 is already the newest version (1.5.10-2+b1). libepoxy0 set to manually installed. libhtml-tree-perl is already the newest version (5.07-3). libhtml-tree-perl set to manually installed. libnghttp2-14 is already the newest version (1.64.0-1.1+b1). libnghttp2-14 set to manually installed. liblcms2-2 is already the newest version (2.17-1). liblcms2-2 set to manually installed. libxkbcommon0 is already the newest version (1.12.3-1). libxkbcommon0 set to manually installed. libreadline8t64 is already the newest version (8.3-3+b1). libreadline8t64 set to manually installed. libc6 is already the newest version (2.42-7). fonts-dejavu-mono is already the newest version (2.37-8). fonts-dejavu-mono set to manually installed. hdf5-helpers is already the newest version (1.14.5+repack-4). hdf5-helpers set to manually installed. libunistring5 is already the newest version (1.3-2+b1). libunistring5 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.7z1xEXX4Eq (Reading database ... 33059 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.7z1xEXX4Eq I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.7z1xEXX4Eq I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.7z1xEXX4Eq... I: success in 102.9089 seconds Downloading dependency 384 of 468: systemd:arm64=259-1 Downloading dependency 385 of 468: librhash1:arm64=1.4.6-1.1 Downloading dependency 386 of 468: libsam-extract-dev:arm64=3.2.1+dfsg-2 Downloading dependency 387 of 468: systemd-sysv:arm64=259-1 Downloading dependency 388 of 468: libzstd1:arm64=1.5.7+dfsg-3+b1 Downloading dependency 389 of 468: libglx0:arm64=1.7.0-3 Downloading dependency 390 of 468: dash:arm64=0.5.12-12 Downloading dependency 391 of 468: libxcursor1:arm64=1:1.2.3-1+b1 Downloading dependency 392 of 468: libhtml-tagset-perl:arm64=3.24-1 Downloading dependency 393 of 468: libcrypt1:arm64=1:4.5.1-1 Downloading dependency 394 of 468: libhdf5-310:arm64=1.14.5+repack-4 Downloading dependency 395 of 468: wdiff:arm64=1.2.2-9 Downloading dependency 396 of 468: libmagic-dev:arm64=1:5.46-5+b1 Downloading dependency 397 of 468: maven-repo-helper:arm64=1.12 Downloading dependency 398 of 468: init-system-helpers:arm64=1.69 Downloading dependency 399 of 468: coreutils:arm64=9.7-3 Downloading dependency 400 of 468: libjpeg62-turbo-dev:arm64=1:2.1.5-4 Downloading dependency 401 of 468: dpkg:arm64=1.23.3 Downloading dependency 402 of 468: openjdk-21-jdk:arm64=21.0.10~6ea-1 Downloading dependency 403 of 468: libhttp-date-perl:arm64=6.06-1 Downloading dependency 404 of 468: gcc-15:arm64=15.2.0-12 Downloading dependency 405 of 468: libwww-robotrules-perl:arm64=6.02-1 Downloading dependency 406 of 468: libhttp-negotiate-perl:arm64=6.01-2 Downloading dependency 407 of 468: libuv1t64:arm64=1.51.0-2 Downloading dependency 408 of 468: libavahi-common-data:arm64=0.8-17 Downloading dependency 409 of 468: cpp-15-aarch64-linux-gnu:arm64=15.2.0-12 Downloading dependency 410 of 468: libpipeline1:arm64=1.5.8-2 Downloading dependency 411 of 468: cmake-data:arm64=4.2.1-2 Downloading dependency 412 of 468: libhwasan0:arm64=15.2.0-12 Downloading dependency 413 of 468: libglvnd0:arm64=1.7.0-3 Downloading dependency 414 of 468: libjansson4:arm64=2.14-2+b4 Downloading dependency 415 of 468: libxcb-xfixes0:arm64=1.17.0-2+b2 Downloading dependency 416 of 468: libcairo-gobject2:arm64=1.18.4-3 Downloading dependency 417 of 468: libuchardet0:arm64=0.0.8-2 Downloading dependency 418 of 468: libio-socket-ssl-perl:arm64=2.098-1 Downloading dependency 419 of 468: libpkgconf3:arm64=1.8.1-4 Downloading dependency 420 of 468: bison:arm64=2:3.8.2+dfsg-1+b2 Downloading dependency 421 of 468: libio-html-perl:arm64=1.004-3 Downloading dependency 422 of 468: libarchive-zip-perl:arm64=1.68-1 Downloading dependency 423 of 468: libkrb5-dev:arm64=1.22.1-2 Downloading dependency 424 of 468: python3.13-minimal:arm64=3.13.11-1+b1 Downloading dependency 425 of 468: pkgconf:arm64=1.8.1-4 Downloading dependency 426 of 468: python3-inflect:arm64=7.5.0-1 Downloading dependency 427 of 468: libmagic1t64:arm64=1:5.46-5+b1 Downloading dependency 428 of 468: libaudit-common:arm64=1:4.1.2-1 Downloading dependency 429 of 468: libnet-ssleay-perl:arm64=1.94-3 Downloading dependency 430 of 468: zlib1g-dev:arm64=1:1.3.dfsg+really1.3.1-1+b2 Downloading dependency 431 of 468: libssh2-1t64:arm64=1.11.1-1 Downloading dependency 432 of 468: libstdc++-15-dev:arm64=15.2.0-12 Downloading dependency 433 of 468: gtk-update-icon-cache:arm64=4.20.3+ds-3 Downloading dependency 434 of 468: libnss3:arm64=2:3.120-1 Downloading dependency 435 of 468: libgmp-dev:arm64=2:6.3.0+dfsg-5+b1 Downloading dependency 436 of 468: ncurses-base:arm64=6.6+20251231-1 Downloading dependency 437 of 468: libngtcp2-crypto-ossl-dev:arm64=1.16.0-1 Downloading dependency 438 of 468: libudev1:arm64=259-1 Downloading dependency 439 of 468: python3-jaraco.context:arm64=6.0.1-1 Downloading dependency 440 of 468: libfile-dirlist-perl:arm64=0.05-3 Downloading dependency 441 of 468: intltool-debian:arm64=0.35.0+20060710.6 Downloading dependency 442 of 468: x11-common:arm64=1:7.7+26 Downloading dependency 443 of 468: libxcomposite1:arm64=1:0.4.6-1+b1 Downloading dependency 444 of 468: libcolord2:arm64=1.4.8-2 Downloading dependency 445 of 468: libwww-perl:arm64=6.81-1 Downloading dependency 446 of 468: ncurses-bin:arm64=6.6+20251231-1 Downloading dependency 447 of 468: gcc:arm64=4:15.2.0-4 Downloading dependency 448 of 468: binutils:arm64=2.45.50.20251209-1 Downloading dependency 449 of 468: libseccomp2:arm64=2.6.0-2+b1 Downloading dependency 450 of 468: gzip:arm64=1.13-1 Downloading dependency 451 of 468: libfile-listing-perl:arm64=6.16-1 Downloading dependency 452 of 468: libatk-bridge2.0-0t64:arm64=2.59.0-1 Downloading dependency 453 of 468: libwayland-cursor0:arm64=1.24.0-2+b1 Downloading dependency 454 of 468: autoconf:arm64=2.72-3.1 Downloading dependency 455 of 468: libidn2-0:arm64=2.3.8-4+b1 Downloading dependency 456 of 468: libgpg-error0:arm64=1.58-1+b1 Downloading dependency 457 of 468: python3-pkg-resources:arm64=78.1.1-0.1 Downloading dependency 458 of 468: binutils-aarch64-linux-gnu:arm64=2.45.50.20251209-1 Downloading dependency 459 of 468: libepoxy0:arm64=1.5.10-2+b1 Downloading dependency 460 of 468: libhtml-tree-perl:arm64=5.07-3 Downloading dependency 461 of 468: libnghttp2-14:arm64=1.64.0-1.1+b1 Downloading dependency 462 of 468: liblcms2-2:arm64=2.17-1 Downloading dependency 463 of 468: libxkbcommon0:arm64=1.12.3-1 Downloading dependency 464 of 468: libreadline8t64:arm64=8.3-3+b1 Downloading dependency 465 of 468: libc6:arm64=2.42-7 Downloading dependency 466 of 468: fonts-dejavu-mono:arm64=2.37-8 Downloading dependency 467 of 468: hdf5-helpers:arm64=1.14.5+repack-4 Downloading dependency 468 of 468: libunistring5:arm64=1.3-2+b1 env --chdir=/srv/rebuilderd/tmp/rebuilderdxra5ZU/out DEB_BUILD_OPTIONS=parallel=8 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1768610988 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildo8RL09/debrebuild.sbuildrc._TtWevP6SBAw sbuild --build=arm64 --host=arm64 --no-source --arch-any --no-arch-all --binNMU-changelog= sra-sdk (3.2.1+dfsg-5+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for arm64; no source changes. * Rebuild to enable GCS on arm64 -- arm Build Daemon (arm-conova-04) Sat, 17 Jan 2026 00:49:48 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildo8RL09/debrebuild.tar.01VuxoiydgTX --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=sra-sdk-3.2.1+dfsg /srv/rebuilderd/tmp/rebuilderdxra5ZU/inputs/sra-sdk_3.2.1+dfsg-5.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on codethink02-arm64 +==============================================================================+ | sra-sdk 3.2.1+dfsg-5+b1 (arm64) Sun, 18 Jan 2026 05:55:42 +0000 | +==============================================================================+ Package: sra-sdk Version: 3.2.1+dfsg-5+b1 Source Version: 3.2.1+dfsg-5 Distribution: unstable Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildo8RL09/debrebuild.tar.01VuxoiydgTX to /srv/rebuilderd/tmp/tmp.sbuild.pjctzABq0F... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Sun, 18 Jan 2026 05:55:51 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdxra5ZU/inputs/sra-sdk_3.2.1+dfsg-5.dsc exists in /srv/rebuilderd/tmp/rebuilderdxra5ZU/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 18 Jan 2026 05:55:54 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, dh-python, javahelper, libabsl-dev, libncbi-vdb-dev (>= 3.2.1+dfsg~), libhdf5-dev, libmagic-dev, libre2-dev, libxml2-dev, libzstd-dev, liblzma-dev, libsam-extract-dev, maven-repo-helper, python3-all, python3-setuptools, python3-vdb, default-jdk, flex, bison, build-essential Filtered Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, dh-python, javahelper, libabsl-dev, libncbi-vdb-dev (>= 3.2.1+dfsg~), libhdf5-dev, libmagic-dev, libre2-dev, libxml2-dev, libzstd-dev, liblzma-dev, libsam-extract-dev, maven-repo-helper, python3-all, python3-setuptools, python3-vdb, default-jdk, flex, bison, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-cEOc9B/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Sun, 18 Jan 2026 05:56:00 +0000 | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in amd64 arm64 all) +------------------------------------------------------------------------------+ | Build environment Sun, 18 Jan 2026 05:56:00 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.63+deb13-cloud-arm64 #1 SMP Debian 6.12.63-1 (2025-12-30) arm64 (aarch64) Toolchain package versions: binutils_2.45.50.20251209-1 dpkg-dev_1.23.3 g++-15_15.2.0-12 gcc-15_15.2.0-12 libc6-dev_2.42-7 libstdc++-15-dev_15.2.0-12 libstdc++6_15.2.0-12 linux-libc-dev_6.18.3-1 Package versions: adwaita-icon-theme_49.0-1 apt_3.1.13 at-spi2-common_2.59.0-1 autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-1 binfmt-support_2.2.2-8 binutils_2.45.50.20251209-1 binutils-aarch64-linux-gnu_2.45.50.20251209-1 binutils-common_2.45.50.20251209-1 bison_2:3.8.2+dfsg-1+b2 bsdextrautils_2.41.3-3 build-essential_12.12 bzip2_1.0.8-6+b1 ca-certificates_20250419 ca-certificates-java_20240118 cmake_4.2.1-2 cmake-data_4.2.1-2 comerr-dev_2.1-1.47.2-3+b8 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-12 cpp-15-aarch64-linux-gnu_15.2.0-12 cpp-aarch64-linux-gnu_4:15.2.0-4 d-shlibs_0.109 dash_0.5.12-12 dbus_1.16.2-2+b1 dbus-bin_1.16.2-2+b1 dbus-daemon_1.16.2-2+b1 dbus-session-bus-common_1.16.2-2 dbus-system-bus-common_1.16.2-2 dbus-user-session_1.16.2-2+b1 dconf-gsettings-backend_0.49.0-4 dconf-service_0.49.0-4 dctrl-tools_2.24-3+b1 debconf_1.5.91 debhelper_13.29 debian-archive-keyring_2025.1 debianutils_5.23.2 default-jdk_2:1.21-76 default-jdk-headless_2:1.21-76 default-jre_2:1.21-76 default-jre-headless_2:1.21-76 devscripts_2.26.4 dh-autoreconf_21 dh-python_7.20251231 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.23.3 dpkg-dev_1.23.3 dwz_0.16-2 fastjar_2:0.98-7+b1 file_1:5.46-5+b1 findutils_4.10.0-3 flex_2.6.4-8.2+b5 fontconfig_2.17.1-3 fontconfig-config_2.17.1-3 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:15.2.0-4 g++-15_15.2.0-12 g++-15-aarch64-linux-gnu_15.2.0-12 g++-aarch64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-12 gcc-15-aarch64-linux-gnu_15.2.0-12 gcc-15-base_15.2.0-12 gcc-aarch64-linux-gnu_4:15.2.0-4 gettext_0.23.2-1 gettext-base_0.23.2-1 gosop_1.1.0-3+b2 gpg_2.4.8-5 gpg-agent_2.4.8-5 gpgconf_2.4.8-5 grep_3.12-1 groff-base_1.23.0-10 gtk-update-icon-cache_4.20.3+ds-3 gzip_1.13-1 hdf5-helpers_1.14.5+repack-4 hicolor-icon-theme_0.18-2 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 jarwrapper_0.81 java-common_0.76 javahelper_0.81 krb5-multidev_1.22.1-2 libabsl-dev_20240722.0-4 libabsl20240722_20240722.0-4 libacl1_2.3.2-2+b1 libaec-dev_1.1.4-2+b1 libaec0_1.1.4-2+b1 libapparmor1_4.1.3-1 libapt-pkg7.0_3.1.13 libarchive-zip-perl_1.68-1 libarchive13t64_3.8.5-1 libasan8_15.2.0-12 libasound2-data_1.2.15.1-1 libasound2t64_1.2.15.1-1 libassuan9_3.0.2-2+b1 libatk-bridge2.0-0t64_2.59.0-1 libatk1.0-0t64_2.59.0-1 libatomic1_15.2.0-12 libatspi2.0-0t64_2.59.0-1 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libavahi-client3_0.8-17 libavahi-common-data_0.8-17 libavahi-common3_0.8-17 libb-hooks-op-check-perl_0.22-3+b2 libbinutils_2.45.50.20251209-1 libblkid1_2.41.3-3 libbrotli-dev_1.1.0-2+b9 libbrotli1_1.1.0-2+b9 libbsd0_0.12.2-2+b1 libbz2-1.0_1.0.8-6+b1 libbz2-dev_1.0.8-6+b1 libc-bin_2.42-7 libc-dev-bin_2.42-7 libc-gconv-modules-extra_2.42-7 libc6_2.42-7 libc6-dev_2.42-7 libcairo-gobject2_1.18.4-3 libcairo2_1.18.4-3 libcap-ng0_0.8.5-4+b2 libcap2_1:2.75-10+b5 libcc1-0_15.2.0-12 libclass-method-modifiers-perl_2.15-1 libclass-xsaccessor-perl_1.19-4+b5 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sqv_1.3.0-5 systemd_259-1 systemd-sysv_259-1 sysvinit-utils_3.15-6 tar_1.35+dfsg-3.1 tzdata_2025c-3 util-linux_2.41.3-3 wdiff_1.2.2-9 x11-common_1:7.7+26 xkb-data_2.46-2 xz-utils_5.8.2-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b2 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b2 +------------------------------------------------------------------------------+ | Build Sun, 18 Jan 2026 05:56:01 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: sra-sdk Binary: sra-toolkit, libngs-c++3, libngs-c++-dev, libncbi-ngs3, libncbi-ngs-dev, libngs-java, libngs-jni, libngs-java-doc, python3-ngs Architecture: amd64 arm64 all Version: 3.2.1+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Aaron M. Ucko Homepage: https://github.com/ncbi/sra-tools/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/sra-sdk Vcs-Git: https://salsa.debian.org/med-team/sra-sdk.git Testsuite: autopkgtest Testsuite-Triggers: ca-certificates Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, dh-python, javahelper, libabsl-dev, libncbi-vdb-dev (>= 3.2.1+dfsg~), libhdf5-dev, libmagic-dev, libre2-dev, libxml2-dev, libzstd-dev, liblzma-dev, libsam-extract-dev, maven-repo-helper, python3-all, python3-setuptools, python3-vdb, default-jdk, flex, bison Package-List: libncbi-ngs-dev deb libdevel optional arch=amd64,arm64 libncbi-ngs3 deb libs optional arch=amd64,arm64 libngs-c++-dev deb libdevel optional arch=amd64,arm64 libngs-c++3 deb libs optional arch=amd64,arm64 libngs-java deb java optional arch=amd64,arm64 libngs-java-doc deb doc optional arch=all libngs-jni deb java optional arch=amd64,arm64 python3-ngs deb python optional arch=all sra-toolkit deb science optional arch=amd64,arm64 Checksums-Sha1: d585cdf3812de6611af566b8d6a5724a069db4af 50260680 sra-sdk_3.2.1+dfsg.orig.tar.xz fef9538ad1a115b25adfe16532f91d620defb1ae 3796012 sra-sdk_3.2.1+dfsg-5.debian.tar.xz Checksums-Sha256: e8ba7358b76d7ff158a0450324901d0466a6d0e61496f1354c8da1167709f7a7 50260680 sra-sdk_3.2.1+dfsg.orig.tar.xz d0c975140d0e55ceca071603643a56425ce31d69805c261b3807c2e2c8bb99e9 3796012 sra-sdk_3.2.1+dfsg-5.debian.tar.xz Files: 5fb6e1fa1abc0dab0f762c2533032db6 50260680 sra-sdk_3.2.1+dfsg.orig.tar.xz 5bdfa6479df1f440c5ad33f08eca7f2d 3796012 sra-sdk_3.2.1+dfsg-5.debian.tar.xz Dgit: 675a223ccaac8808beb394f52a1a161e44b3762f debian archive/debian/3.2.1+dfsg-5 https://git.dgit.debian.org/sra-sdk -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEfDq5z9IwvTDdAJxZHnCRsfFKZKIFAmihT24ACgkQHnCRsfFK ZKJk4A/+OsDGTr4vfwZX9nzi4yPaT9ozQtiBs4Tb9obLXeomlwwqqA+H7BUyrCgk Kl/JoyqYjQqc85lreTyo1ysgFgOvwboNmNdCNdgKFx2U3wndJaKX7F6HCZCTLUi4 2gY0co4BgNHc/DV4+3gWFWZycl5O2i9C+UKlEuMwlnI0iT/Bw7SzAXA2aEXziFCG 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keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting sra-sdk in /build/reproducible-path/sra-sdk-3.2.1+dfsg dpkg-source: info: unpacking sra-sdk_3.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking sra-sdk_3.2.1+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying set_explicit_path_to_schemata.patch dpkg-source: info: applying python3 dpkg-source: info: applying skip_test_using_lots_of_memory.patch dpkg-source: info: applying find_ncbi-vdb-interfaces.patch dpkg-source: info: applying link_vdb_dynamically.patch dpkg-source: info: applying use_debian_packaged_re2.patch dpkg-source: info: applying use_debian_packaged_compression_libs.patch dpkg-source: info: applying use_soversions.patch dpkg-source: info: applying label_online_tests.patch dpkg-source: info: applying prefer_dynamic_libraries.patch dpkg-source: info: applying fix_ngs-c++-underlinkage.patch dpkg-source: info: applying use_c_locale_for_comma.patch dpkg-source: info: applying no_sse4.2.patch dpkg-source: info: applying fix_arm64_build.patch dpkg-source: info: applying support_libre2-11.patch dpkg-source: info: applying pyhon3.12-syntax.patch dpkg-source: info: applying setuptools.patch dpkg-source: info: applying fix_bm_for_gcc15.patch dpkg-source: info: applying include_cstdint_for_gcc15.patch dpkg-source: info: applying bypass-libxml2-ATTRIBUTE_UNUSED.patch dpkg-source: info: applying auto-gitignore Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 3.2.1+dfsg-5+b1 User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1768610988 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package sra-sdk dpkg-buildpackage: info: source version 3.2.1+dfsg-5+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by arm Build Daemon (arm-conova-04) dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=cmake \ --with python3,javahelper,jh_maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' dh_auto_clean rm -rf ngs/ngs-java/aarch64-linux-gnu rm -rf ngs/ngs-bam/aarch64-linux-gnu rm -f ngs/ngs-bam/Makefile.config rm -f ngs/ngs-bam/Makefile.config.install.linux.x86_64.prl rm -f ngs/ngs-bam/Makefile.config.linux.x86_64 rm -f ngs/ngs-bam/reconfigure rm -rf ngs/ngs-sdk/ngs/unix/generic rm -rf ngs/ngs-sdk/aarch64-linux-gnu rm -rf ngs/ngs-python/build ngs/ngs-python/dist rm -rf ngs/ngs-python/ngs.egg-info find test tools -name actual -type d | xargs -rt rm -rf rm -rf ngs/ngs-*/examples/actual/* rm -fv test/*/*/tmp.kfg rm -rf libs/general-writer/test/actual rm -rf libs/ngs-vdb/test/data/SparseFragmentBlobs rm -rf test/external/vdb-dump/db test/loaders/bam-load/out.sra rm -rf test/schema/test_*.db test/vdb/db find tools/loaders/general-loader/test -name input | xargs -rt rm -rf rm -f ngs/ngs-sdk/examples/actual.txt rm -f debian/libngs-jni.links rm -rf .pybuild make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' dh_autoreconf_clean -O--buildsystem=cmake jh_clean -O--buildsystem=cmake Duplicate specification "u=s" for option "u" dh_clean -O--buildsystem=cmake debian/rules binary-arch dh binary-arch --buildsystem=cmake \ --with python3,javahelper,jh_maven_repo_helper dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' dh_auto_configure -- -DVDB_LIBDIR=/usr/lib/aarch64-linux-gnu \ -DVDB_INCDIR=/usr/include/ncbi-vdb -DBUILD_TOOLS_LOADERS=ON \ -DBUILD_TOOLS_INTERNAL=ON -DBUILD_TOOLS_TEST_TOOLS=ON \ -DCMAKE_SKIP_RPATH=ON -DTOOLS_ONLY=OFF \ -DCOMPILER_OPTION_SSE42_SUPPORTED=FALSE cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DVDB_LIBDIR=/usr/lib/aarch64-linux-gnu -DVDB_INCDIR=/usr/include/ncbi-vdb -DBUILD_TOOLS_LOADERS=ON -DBUILD_TOOLS_INTERNAL=ON -DBUILD_TOOLS_TEST_TOOLS=ON -DCMAKE_SKIP_RPATH=ON -DTOOLS_ONLY=OFF -DCOMPILER_OPTION_SSE42_SUPPORTED=FALSE .. CMAKE_VERSION=4.2.1 -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at build/env.cmake:32 (cmake_policy): The OLD behavior for policy CMP0115 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. Call Stack (most recent call first): CMakeLists.txt:62 (include) BUILD_TOOLS_INTERNAL=ON BUILD_TOOLS_LOADERS=ON BUILD_TOOLS_TEST_TOOLS=ON TOOLS_ONLY=OFF VERSION=3.2.1 -- Found FLEX: /usr/bin/flex (found suitable version "2.6.4", minimum required is "2.6") -- Found BISON: /usr/bin/bison (found suitable version "3.8.2", minimum required is "3") -- Found LibXml2: /usr/lib/aarch64-linux-gnu/libxml2.so (found version "2.15.1") LIBXML2_INCLUDE_DIR=/usr/include/libxml2 LIBXML2_LIBRARIES=/usr/lib/aarch64-linux-gnu/libxml2.so -- Found Java: /usr/bin/java (found version "21.0.10") found components: Development -- Found Python3: /usr/bin/python3 (found version "3.13.11") found components: Interpreter Using ncbi-vdb interfaces: /usr/include/ncbi-vdb Using ncbi-vdb binary libraries: /usr/lib/aarch64-linux-gnu -- Looking for C++ include mbedtls/md.h -- Looking for C++ include mbedtls/md.h - found -- Performing Test HAVE_MBEDTLS_F -- Performing Test HAVE_MBEDTLS_F - Failed RUN_SANITIZER_TESTS: OFF -- Found JNI: /usr/lib/jvm/default-java/include found components: AWT JVM -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Found BZip2: /usr/lib/aarch64-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE RE2_FOUND=TRUE -- Found HDF5: /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/aarch64-linux-gnu/libcrypto.so;/usr/lib/aarch64-linux-gnu/libcurl.so;/usr/lib/aarch64-linux-gnu/libpthread.a;/usr/lib/aarch64-linux-gnu/libsz.so;/usr/lib/aarch64-linux-gnu/libz.so;/usr/lib/aarch64-linux-gnu/libdl.a;/usr/lib/aarch64-linux-gnu/libm.so (found version "1.14.5") found components: C CMake Deprecation Warning at tools/test-tools/qa-stats/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at tools/test-tools/rnd2sra/CMakeLists.txt:25 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. RE2_FOUND=TRUE -- Configuring done (3.5s) -- Generating done (0.7s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' jh_linkjars -a -O--buildsystem=cmake Duplicate specification "unlink|u" for option "u" dh_auto_build -a -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j8 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/sra-sdk-3.2.1+dfsg -B/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f shared/CMakeFiles/tk-version.dir/build.make shared/CMakeFiles/tk-version.dir/depend make -f ngs/ncbi/ngs/CMakeFiles/ngs.dir/build.make ngs/ncbi/ngs/CMakeFiles/ngs.dir/depend make -f ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build.make ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/depend make -f ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build.make ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/depend make -f ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build.make ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/depend make -f ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build.make ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/depend make -f ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build.make ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/shared /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/shared /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/shared/CMakeFiles/tk-version.dir/DependInfo.cmake "--color=" tk-version make -f ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build.make ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/DependInfo.cmake "--color=" ngs-jni make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-py /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/DependInfo.cmake "--color=" ngs-py make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs/CMakeFiles/ngs.dir/DependInfo.cmake "--color=" ngs make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/DependInfo.cmake "--color=" ngs-disp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/DependInfo.cmake "--color=" ngs-bind-c++ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/DependInfo.cmake "--color=" ngs-bind-java cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/DependInfo.cmake "--color=" ngs-bind-python make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build.make ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f shared/CMakeFiles/tk-version.dir/build.make shared/CMakeFiles/tk-version.dir/build make -f ngs/ncbi/ngs/CMakeFiles/ngs.dir/build.make ngs/ncbi/ngs/CMakeFiles/ngs.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build.make ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build make -f ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build.make ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build make -f ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build.make ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build make -f ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build.make ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build make -f ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build.make ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 0%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o [ 0%] Building C object shared/CMakeFiles/tk-version.dir/toolkit.vers.c.o [ 0%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadCollectionItf.cpp [ 0%] Building C object ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o [ 0%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o -MF CMakeFiles/ngs.dir/NCBI-NGS.c.o.d -o CMakeFiles/ngs.dir/NCBI-NGS.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NCBI-NGS.c [ 0%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/shared && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"shared\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT shared/CMakeFiles/tk-version.dir/toolkit.vers.c.o -MF CMakeFiles/tk-version.dir/toolkit.vers.c.o.d -o CMakeFiles/tk-version.dir/toolkit.vers.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/shared/toolkit.vers.c [ 0%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs-py\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o -MF CMakeFiles/ngs-py.dir/py_Manager.c.o.d -o CMakeFiles/ngs-py.dir/py_Manager.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py/py_Manager.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReadCollectionItf.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs-jni\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o -MF CMakeFiles/ngs-jni.dir/jni_Manager.c.o.d -o CMakeFiles/ngs-jni.dir/jni_Manager.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni/jni_Manager.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadCollection.cpp [ 0%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_AlignmentItf.cpp [ 0%] Linking C static library ../ilib/libtk-version.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/shared && /usr/bin/cmake -P CMakeFiles/tk-version.dir/cmake_clean_target.cmake [ 0%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o -MF CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o.d -o CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_PileupEvent.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/shared && /usr/bin/cmake -E cmake_link_script CMakeFiles/tk-version.dir/link.txt --verbose=1 /usr/bin/ar qc ../ilib/libtk-version.a "CMakeFiles/tk-version.dir/toolkit.vers.c.o" /usr/bin/ranlib ../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 0%] Linking C static library ../../../ilib/libngs-py.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cmake -P CMakeFiles/ngs-py.dir/cmake_clean_target.cmake [ 0%] Built target tk-version [ 0%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-py.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs-jni\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o -MF CMakeFiles/ngs-jni.dir/jni_String.c.o.d -o CMakeFiles/ngs-jni.dir/jni_String.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni/jni_String.c [ 0%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_AlignmentIteratorItf.cpp /usr/bin/ar qc ../../../ilib/libngs-py.a "CMakeFiles/ngs-py.dir/py_Manager.c.o" /usr/bin/ranlib ../../../ilib/libngs-py.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 0%] Built target ngs-py [ 1%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReferenceItf.cpp [ 1%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs-jni\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -MF CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o.d -o CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni/jni_ErrorMsg.c [ 1%] Linking C static library ../../../ilib/libngs-jni.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cmake -P CMakeFiles/ngs-jni.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-jni.dir/link.txt --verbose=1 [ 1%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReferenceSequence.cpp /usr/bin/ar qc ../../../ilib/libngs-jni.a "CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "CMakeFiles/ngs-jni.dir/jni_String.c.o" "CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" /usr/bin/ranlib ../../../ilib/libngs-jni.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target ngs-jni [ 1%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReferenceSequenceItf.cpp [ 1%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_Pileup.c [ 2%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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-Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceItf.cpp [ 2%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReferenceIterator.cpp [ 2%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Reference.cpp [ 2%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -MF CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o.d -o CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_ReferenceWindow.c [ 2%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_FragmentIteratorItf.cpp [ 2%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PileupItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/PileupItf.cpp [ 2%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceSequenceItf.cpp [ 2%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o -MF CMakeFiles/ngs.dir/CSRA1_Reference.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Reference.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_Reference.c [ 2%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o -MF CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_ReadCollection.c [ 2%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/PileupIterator.cpp [ 2%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PackageItf.cpp make -f ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build.make ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/DependInfo.cmake "--color=" ngs-adapt-c++ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build.make ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 2%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReadCollectionItf.cpp [ 2%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/PileupEventItf.cpp [ 2%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Pileup.cpp [ 2%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupIteratorItf.cpp [ 2%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupItf.cpp [ 2%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_Read.c [ 3%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupEventItf.cpp [ 3%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/EBI_ReferenceSequence.c [ 3%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/PileupItf.cpp [ 3%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/PileupEventIterator.cpp [ 3%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o cd 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ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/PileupEvent.cpp [ 4%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/AlignmentIterator.cpp [ 4%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o -MF CMakeFiles/ngs.dir/SRA_Statistics.c.o.d -o CMakeFiles/ngs.dir/SRA_Statistics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_Statistics.c [ 4%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupEventIteratorItf.cpp [ 4%] Building CXX object 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CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/PileupEventItf.cpp [ 4%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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-fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Alignment.cpp [ 5%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -MF CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_DB_ReadCollection.c [ 5%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupItf.cpp [ 6%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReferenceItf.cpp [ 6%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_Read.c [ 6%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReadGroupItf.cpp [ 6%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReferenceSequenceItf.cpp [ 6%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_AlignmentItf.cpp [ 6%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadGroupIterator.cpp [ 6%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/AlignmentItf.cpp [ 6%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o [ 6%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReadItf.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupIteratorItf.cpp [ 7%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o [ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -MF CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/FragmentItf.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -MF CMakeFiles/ngs.dir/SRA_ReadGroup.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReadGroup.c [ 7%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadCollectionItf.cpp [ 7%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadGroup.cpp [ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -MF CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReadGroupInfo.c [ 7%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReadGroupItf.cpp [ 7%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReadItf.cpp [ 7%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadGroupIteratorItf.cpp [ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o -MF CMakeFiles/ngs.dir/SRA_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReadCollection.c [ 7%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadGroupItf.cpp [ 7%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o -MF CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/StatisticsItf.cpp [ 7%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadGroupItf.cpp [ 7%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadIterator.cpp [ 7%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Read.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Read.cpp [ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReferenceSequence.c [ 7%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/FragmentItf.cpp [ 7%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/StatisticsItf.cpp [ 7%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o [ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o -MF CMakeFiles/ngs.dir/NGS_Statistics.c.o.d -o CMakeFiles/ngs.dir/NGS_Statistics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Statistics.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadIteratorItf.cpp [ 8%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PackageItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/PackageItf.cpp [ 8%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadGroupIteratorItf.cpp [ 8%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -MF CMakeFiles/ngs.dir/NGS_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReadCollection.c [ 8%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/FragmentIterator.cpp [ 8%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -MF CMakeFiles/ngs.dir/NGS_PileupEvent.c.o.d -o CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_PileupEvent.c [ 8%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/StringItf.cpp [ 8%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/Refcount.cpp [ 8%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadItf.cpp [ 8%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadItf.cpp [ 8%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/StringItf.cpp [ 8%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o -MF CMakeFiles/ngs-disp.dir/Refcount.cpp.o.d -o CMakeFiles/ngs-disp.dir/Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/Refcount.cpp [ 8%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o -MF CMakeFiles/ngs.dir/NGS_Pileup.c.o.d -o CMakeFiles/ngs.dir/NGS_Pileup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Pileup.c [ 8%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -MF CMakeFiles/ngs.dir/NGS_ReadGroup.c.o.d -o CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReadGroup.c [ 8%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Fragment.cpp [ 8%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ErrorMsg.cpp [ 8%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o -MF CMakeFiles/ngs-disp.dir/VTable.cpp.o.d -o CMakeFiles/ngs-disp.dir/VTable.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/VTable.cpp [ 9%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o -MF CMakeFiles/ngs.dir/NGS_Alignment.c.o.d -o CMakeFiles/ngs.dir/NGS_Alignment.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Alignment.c [ 9%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o -MF CMakeFiles/ngs.dir/NGS_Reference.c.o.d -o CMakeFiles/ngs.dir/NGS_Reference.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Reference.c [ 9%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -MF CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o.d -o CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ErrBlock.cpp [ 9%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadIteratorItf.cpp [ 9%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_FragmentItf.cpp [ 9%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Statistics.cpp [ 10%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ErrBlock.cpp [ 10%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_StatisticsItf.cpp [ 10%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -MF CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o.d -o CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ErrorMsg.cpp [ 11%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_Package.cpp [ 12%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReferenceItf.cpp [ 12%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o make -f ngs/ngs-java/CMakeFiles/ngs-java.dir/build.make ngs/ngs-java/CMakeFiles/ngs-java.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir/DependInfo.cmake "--color=" ngs-java cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReferenceSequence.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-java/CMakeFiles/ngs-java.dir/build.make ngs/ngs-java/CMakeFiles/ngs-java.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 12%] Building Java objects for ngs-java.jar [ 12%] Linking CXX static library ../../../ilib/libngs-adapt-c++.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-4.2/Modules/UseJava/ClearClassFiles.cmake --log-level STATUS cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/cmake -P CMakeFiles/ngs-adapt-c++.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-adapt-c++.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/javac -classpath :/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib -d /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir -h ./jni @/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir/java_sources [ 13%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/StringRef.cpp /usr/bin/ar qc ../../../ilib/libngs-adapt-c++.a "CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o" /usr/bin/ranlib ../../../ilib/libngs-adapt-c++.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 13%] Built target ngs-adapt-c++ [ 13%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o -MF CMakeFiles/ngs.dir/NGS_Read.c.o.d -o CMakeFiles/ngs.dir/NGS_Read.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Read.c [ 13%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReferenceIteratorItf.cpp make -f ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/DependInfo.cmake "--color=" ngs-doc_javadoc make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/javadoc -d /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc -sourcepath "/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java" gov.nih.nlm.ncbi.ngs ngs [ 13%] Linking CXX static library ../../../ilib/libngs-disp.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/cmake -P CMakeFiles/ngs-disp.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-disp.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../ilib/libngs-disp.a "CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "CMakeFiles/ngs-disp.dir/VTable.cpp.o" "CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" /usr/bin/ranlib ../../../ilib/libngs-disp.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 13%] Built target ngs-disp [ 13%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReferenceSequenceItf.cpp make -f libs/kxml/CMakeFiles/kxml.dir/build.make libs/kxml/CMakeFiles/kxml.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml/CMakeFiles/kxml.dir/DependInfo.cmake "--color=" kxml [ 13%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/kxml/CMakeFiles/kxml.dir/build.make libs/kxml/CMakeFiles/kxml.dir/build cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_String.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 14%] Building C object libs/kxml/CMakeFiles/kxml.dir/xml.c.o [ 14%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o -MF CMakeFiles/ngs.dir/NGS_Fragment.c.o.d -o CMakeFiles/ngs.dir/NGS_Fragment.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Fragment.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/kxml\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/libxml2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xml.c.o -MF CMakeFiles/kxml.dir/xml.c.o.d -o CMakeFiles/kxml.dir/xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml/xml.c [ 14%] Building C object libs/kxml/CMakeFiles/kxml.dir/xtoc-parsexml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/kxml\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/libxml2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xtoc-parsexml.c.o -MF CMakeFiles/kxml.dir/xtoc-parsexml.c.o.d -o CMakeFiles/kxml.dir/xtoc-parsexml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml/xtoc-parsexml.c [ 14%] Linking CXX static library ../../../../ilib/libngs-bind-c++.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/cmake -P CMakeFiles/ngs-bind-c++.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-c++.dir/link.txt --verbose=1 [ 14%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o -MF CMakeFiles/ngs.dir/NGS_Cursor.c.o.d -o CMakeFiles/ngs.dir/NGS_Cursor.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Cursor.c /usr/bin/ar qc ../../../../ilib/libngs-bind-c++.a "CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" /usr/bin/ranlib ../../../../ilib/libngs-bind-c++.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 14%] Built target ngs-bind-c++ [ 14%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_Refcount.cpp [ 14%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_StatisticsItf.cpp [ 14%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o -MF CMakeFiles/ngs.dir/NGS_Refcount.c.o.d -o CMakeFiles/ngs.dir/NGS_Refcount.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Refcount.c [ 14%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o -MF CMakeFiles/ngs.dir/NGS_String.c.o.d -o CMakeFiles/ngs.dir/NGS_String.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_String.c Loading source files for package gov.nih.nlm.ncbi.ngs... make -f libs/loader/CMakeFiles/loader.dir/build.make libs/loader/CMakeFiles/loader.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader/CMakeFiles/loader.dir/DependInfo.cmake "--color=" loader make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/loader/CMakeFiles/loader.dir/build.make libs/loader/CMakeFiles/loader.dir/build Loading source files for package ngs... make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 14%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o [ 14%] Building C object libs/loader/CMakeFiles/loader.dir/progressbar.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/progressbar.c.o -MF CMakeFiles/loader.dir/progressbar.c.o.d -o CMakeFiles/loader.dir/progressbar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/progressbar.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o -MF CMakeFiles/ngs.dir/NGS_Id.c.o.d -o CMakeFiles/ngs.dir/NGS_Id.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Id.c [ 14%] Building C object libs/kxml/CMakeFiles/kxml.dir/xtoc.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/kxml\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/libxml2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xtoc.c.o -MF CMakeFiles/kxml.dir/xtoc.c.o.d -o CMakeFiles/kxml.dir/xtoc.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml/xtoc.c [ 14%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ErrorMsg.cpp [ 14%] Building C object libs/loader/CMakeFiles/loader.dir/loader-file.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/loader-file.c.o -MF CMakeFiles/loader.dir/loader-file.c.o.d -o CMakeFiles/loader.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/loader-file.c [ 15%] Building C object libs/loader/CMakeFiles/loader.dir/loader-meta.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/loader-meta.c.o -MF CMakeFiles/loader.dir/loader-meta.c.o.d -o CMakeFiles/loader.dir/loader-meta.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/loader-meta.c [ 15%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -MF CMakeFiles/ngs.dir/NGS_ErrBlock.c.o.d -o CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ErrBlock.c Constructing Javadoc information... [ 16%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o -MF CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o.d -o CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_FragmentBlob.c [ 16%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_Refcount.cpp [ 16%] Building C object libs/loader/CMakeFiles/loader.dir/queue-file.c.o [ 16%] Linking CXX static library ../../../../ilib/libngs-bind-java.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/queue-file.c.o -MF CMakeFiles/loader.dir/queue-file.c.o.d -o CMakeFiles/loader.dir/queue-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/queue-file.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/cmake -P CMakeFiles/ngs-bind-java.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-java.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../ilib/libngs-bind-java.a "CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" /usr/bin/ranlib ../../../../ilib/libngs-bind-java.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build.make libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/vdb-sqlite /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/DependInfo.cmake "--color=" vdb-sqlite [ 16%] Built target ngs-bind-java [ 16%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_StringItf.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build.make libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 16%] Building C object libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/vdb-sqlite && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/vdb-sqlite\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3.c.o -MF CMakeFiles/vdb-sqlite.dir/sqlite3.c.o.d -o CMakeFiles/vdb-sqlite.dir/sqlite3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c [ 16%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -MF CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o.d -o CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_FragmentBlobIterator.c [ 16%] Building C object libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o -MF CMakeFiles/loader.dir/alignment-writer.c.o.d -o CMakeFiles/loader.dir/alignment-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/alignment-writer.c [ 16%] Building C object libs/loader/CMakeFiles/loader.dir/common-reader.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/common-reader.c.o -MF CMakeFiles/loader.dir/common-reader.c.o.d -o CMakeFiles/loader.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/common-reader.c [ 16%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReferenceBlob.c [ 16%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReferenceBlobIterator.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c: In function ‘sqlite3DefaultRowEst’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102377:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 102377 | if( pIdx->pPartIdxWhere!=0 ) a[0] -= 10; assert( 10==sqlite3LogEst(2) ); | ^~ In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:11540: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102377:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 102377 | if( pIdx->pPartIdxWhere!=0 ) a[0] -= 10; assert( 10==sqlite3LogEst(2) ); | ^~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102378:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 102378 | if( a[0]<33 ) a[0] = 33; assert( 33==sqlite3LogEst(10) ); | ^~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102378:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 102378 | if( a[0]<33 ) a[0] = 33; assert( 33==sqlite3LogEst(10) ); | ^~~~~~ Creating destination directory: "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/" ngs/itf/Refcount.java:57: warning: [removal] finalize() in Object has been deprecated and marked for removal protected void finalize () ^ [ 16%] Building C object libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/vdb-sqlite && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/vdb-sqlite\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -MF CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o.d -o CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3vdb.c [ 16%] Linking CXX static library ../../../../ilib/libngs-bind-python.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/cmake -P CMakeFiles/ngs-bind-python.dir/cmake_clean_target.cmake [ 16%] Building C object libs/loader/CMakeFiles/loader.dir/common-writer.c.o [ 16%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/common-writer.c.o -MF CMakeFiles/loader.dir/common-writer.c.o.d -o CMakeFiles/loader.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/common-writer.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o -MF CMakeFiles/ngs.dir/VByteBlob.c.o.d -o CMakeFiles/ngs.dir/VByteBlob.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/VByteBlob.c Building index for all the packages and classes... Standard Doclet version 21.0.10-ea+6-Debian-1 Building tree for all the packages and classes... cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-python.dir/link.txt --verbose=1 [ 16%] Linking C static library ../../ilib/libkxml.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml && /usr/bin/cmake -P CMakeFiles/kxml.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/kxml && /usr/bin/cmake -E cmake_link_script CMakeFiles/kxml.dir/link.txt --verbose=1 Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Alignment.html... /usr/bin/ar qc ../../ilib/libkxml.a CMakeFiles/kxml.dir/xml.c.o "CMakeFiles/kxml.dir/xtoc-parsexml.c.o" CMakeFiles/kxml.dir/xtoc.c.o /usr/bin/ranlib ../../ilib/libkxml.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/ar qc ../../../../ilib/libngs-bind-python.a "CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" /usr/bin/ranlib ../../../../ilib/libngs-bind-python.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 16%] Built target kxml make -f libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build.make libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/DependInfo.cmake "--color=" ngs-vdb [ 16%] Built target ngs-bind-python make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build.make libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 16%] Building C object libs/loader/CMakeFiles/loader.dir/mmarray.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/mmarray.c.o -MF CMakeFiles/loader.dir/mmarray.c.o.d -o CMakeFiles/loader.dir/mmarray.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/mmarray.c [ 16%] Linking C static library ../../../ilib/libngs.a [ 16%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cmake -P CMakeFiles/ngs.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/VdbReadCollection.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs.dir/link.txt --verbose=1 /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:140: warning: no comment static int all = primaryAlignment | secondaryAlignment; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:176: warning: no comment static int clipLeft = 0; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:177: warning: no comment static int clipRight = 1; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:132: warning: no comment static int maxMapQuality = 8; // pass alignments with mappingQuality <= param ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:131: warning: no comment static int minMapQuality = 4; // pass alignments with mappingQuality >= param ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:133: warning: no comment static int noWraparound = 16; // do not include leading wrapped around alignments to circular references ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:130: warning: no comment static int passDuplicates = 2; // either a PCR or optical duplicate ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:129: warning: no comment static int passFailed = 1; // reads rejected due to platform/vendor quality criteria ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:138: warning: no comment static int primaryAlignment = 1; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:139: warning: no comment static int secondaryAlignment = 2; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:134: warning: no comment static int startWithinSlice = 32; // change slice intersection criteria so that start pos is within slice ^ /usr/bin/ar qc ../../../ilib/libngs.a "CMakeFiles/ngs.dir/NCBI-NGS.c.o" CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o CMakeFiles/ngs.dir/CSRA1_Pileup.c.o CMakeFiles/ngs.dir/CSRA1_Alignment.c.o CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o CMakeFiles/ngs.dir/CSRA1_Reference.c.o CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o CMakeFiles/ngs.dir/CSRA1_Read.c.o CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o CMakeFiles/ngs.dir/SRA_Statistics.c.o CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o CMakeFiles/ngs.dir/SRA_Read.c.o CMakeFiles/ngs.dir/SRA_ReadGroup.c.o CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o CMakeFiles/ngs.dir/SRA_ReadCollection.c.o CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o CMakeFiles/ngs.dir/NGS_Statistics.c.o CMakeFiles/ngs.dir/NGS_ReadCollection.c.o CMakeFiles/ngs.dir/NGS_PileupEvent.c.o CMakeFiles/ngs.dir/NGS_Pileup.c.o CMakeFiles/ngs.dir/NGS_ReadGroup.c.o CMakeFiles/ngs.dir/NGS_Alignment.c.o CMakeFiles/ngs.dir/NGS_Reference.c.o CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o CMakeFiles/ngs.dir/NGS_Read.c.o CMakeFiles/ngs.dir/NGS_Fragment.c.o CMakeFiles/ngs.dir/NGS_Cursor.c.o CMakeFiles/ngs.dir/NGS_Refcount.c.o CMakeFiles/ngs.dir/NGS_String.c.o CMakeFiles/ngs.dir/NGS_Id.c.o CMakeFiles/ngs.dir/NGS_ErrBlock.c.o CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o CMakeFiles/ngs.dir/VByteBlob.c.o /usr/bin/ranlib ../../../ilib/libngs.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 16%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -MF CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o.d -o CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlobIterator.cpp [ 16%] Built target ngs [ 16%] Building C object libs/loader/CMakeFiles/loader.dir/reference-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/reference-writer.c.o -MF CMakeFiles/loader.dir/reference-writer.c.o.d -o CMakeFiles/loader.dir/reference-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/reference-writer.c Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/AlignmentIterator.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ErrorMsg.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:38: warning: no main description * @return What went wrong ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:49: warning: no comment public ErrorMsg () ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:53: warning: no comment public ErrorMsg ( String message ) ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:58: warning: no comment public ErrorMsg ( ErrorMsg obj ) ^ Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Fragment.html... make -f libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/build.make libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/DependInfo.cmake "--color=" ngs-makedb Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/FragmentIterator.html... make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/build.make libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/LibDependencies.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:29: warning: no comment public class LibDependencies { ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:34: warning: no comment public final static String NCBI_VDB = "ncbi-ngs"; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:30: warning: no comment public final static String NGS_SDK = "ngs-sdk"; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:29: warning: use of default constructor, which does not provide a comment public class LibDependencies { ^ Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/NGS.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:40: warning: no comment public class NGS ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:40: warning: use of default constructor, which does not provide a comment public class NGS ^ [ 16%] Building CXX object libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:133: warning: no comment public static void main(String[] args) { ^ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o -MF CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o.d -o CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_makedb.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Package.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Package.java:37: warning: no main description * @return package version as a 1..3 part string ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Package.java:33: warning: use of default constructor, which does not provide a comment public class Package ^ [ 16%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -MF CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o.d -o CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp make -f libs/ascp/CMakeFiles/ascp.dir/build.make libs/ascp/CMakeFiles/ascp.dir/depend Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Pileup.html... make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ascp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ascp/CMakeFiles/ascp.dir/DependInfo.cmake "--color=" ascp /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Pileup.java:58: warning: no main description * @return base at current Reference position ^ Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupEvent.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:118: warning: no comment static int alignment_minus_strand = 0x20; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:116: warning: no comment static int alignment_start = 0x80; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:117: warning: no comment static int alignment_stop = 0x40; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:98: warning: no comment static int deletion = 2; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:104: warning: no comment static int insertion = 0x08; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:112: warning: no comment static int insertion_before_deletion = insertion | deletion; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:107: warning: no comment static int insertion_before_match = insertion | match; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:108: warning: no comment static int insertion_before_mismatch = insertion | mismatch; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:180: warning: no comment static int intron_minus = 2; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:179: warning: no comment static int intron_plus = 1; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:181: warning: no comment static int intron_unknown = 3; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:97: warning: no comment static int mismatch = 1; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:191: warning: no comment static int read_gap = 5; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:186: warning: no comment static int read_overlap = 4; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:113: warning: no comment static int replacement = insertion_before_deletion; ^ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ascp/CMakeFiles/ascp.dir/build.make libs/ascp/CMakeFiles/ascp.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 16%] Building C object libs/ascp/CMakeFiles/ascp.dir/ascp.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ascp && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/ascp\" -Darm64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/ascp/CMakeFiles/ascp.dir/ascp.c.o -MF CMakeFiles/ascp.dir/ascp.c.o.d -o CMakeFiles/ascp.dir/ascp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp/ascp.c Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupEventIterator.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupIterator.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Read.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Read.java:35: warning: no comment public interface Read ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Read.java:79: warning: no comment static int aligned = fullyAligned | partiallyAligned; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Read.java:81: warning: no comment static int all = aligned | unaligned; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Read.java:78: warning: no comment static int partiallyAligned = 2; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Read.java:80: warning: no comment static int unaligned = 4; ^ Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadCollection.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ReadCollection.java:88: warning: no main description * @param spec the name of a contained read group ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ReadCollection.java:121: warning: no main description * @param spec the name of a contained Reference ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp: In member function ‘void ncbi::ngs::vdb::FragmentBlob::GetFragmentInfo(uint64_t, std::string*, uint64_t*, uint64_t*, bool*) const’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp:125:24: warning: ignoring return value of ‘bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, declared with attribute ‘nodiscard’ [-Wunused-result] 125 | fragId . empty (); | ~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/15/string:56, from /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/ngs/itf/ErrorMsg.hpp:35, from /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/ngs/ErrorMsg.hpp:31, from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/ngs-vdb/FragmentBlob.hpp:30, from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp:27: /usr/include/c++/15/bits/basic_string.h:1331:7: note: declared here 1331 | empty() const _GLIBCXX_NOEXCEPT | ^~~~~ Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadGroup.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadGroupIterator.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadIterator.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ReadIterator.java:34: warning: no comment public interface ReadIterator ^ Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Reference.html... [ 17%] Building C object libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ascp && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/ascp\" -Darm64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -Wno-unused-result -MD -MT libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o -MF CMakeFiles/ascp.dir/unix/connect.c.o.d -o CMakeFiles/ascp.dir/unix/connect.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp/unix/connect.c Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReferenceIterator.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReferenceSequence.html... [ 17%] Building C object libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o -MF CMakeFiles/loader.dir/sequence-writer.c.o.d -o CMakeFiles/loader.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/sequence-writer.c Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Statistics.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Statistics.java:41: warning: no comment static int int64 = 2; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Statistics.java:43: warning: no comment static int real = 4; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Statistics.java:40: warning: no comment static int string = 1; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Statistics.java:42: warning: no comment static int uint64 = 3; ^ Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-summary.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-tree.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/package-summary.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/package-tree.html... [ 17%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/VdbReference.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/constant-values.html... [ 17%] Building C object libs/ascp/CMakeFiles/ascp.dir/linux/ascp-path.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ascp && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/ascp\" -Darm64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/ascp/CMakeFiles/ascp.dir/linux/ascp-path.c.o -MF CMakeFiles/ascp.dir/linux/ascp-path.c.o.d -o CMakeFiles/ascp.dir/linux/ascp-path.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp/linux/ascp-path.c Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/serialized-form.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/overview-tree.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/index.html... Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Building index for all classes... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/allclasses-index.html... 1 warning Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/allpackages-index.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/index-all.html... cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir/java_compiled_ngs-java [ 17%] Generating CMakeFiles/ngs-java.dir/java_class_filelist cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-4.2/Modules/UseJava/ClassFilelist.cmake [ 17%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/search.html... cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -MF CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o.d -o CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/ReferenceBlob.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/overview-summary.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/help-doc.html... 52 warnings [ 17%] Linking C static library ../../ilib/libloader.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cmake -P CMakeFiles/loader.dir/cmake_clean_target.cmake [ 18%] Creating Java archive ngs-java.jar cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-java.jar @java_class_filelist cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/loader.dir/link.txt --verbose=1 [ 18%] Linking C static library ../../ilib/libascp.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ascp && /usr/bin/cmake -P CMakeFiles/ascp.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ascp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ascp.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/ar qc ../../ilib/libloader.a CMakeFiles/loader.dir/progressbar.c.o "CMakeFiles/loader.dir/loader-file.c.o" "CMakeFiles/loader.dir/loader-meta.c.o" "CMakeFiles/loader.dir/queue-file.c.o" "CMakeFiles/loader.dir/alignment-writer.c.o" "CMakeFiles/loader.dir/common-reader.c.o" "CMakeFiles/loader.dir/common-writer.c.o" CMakeFiles/loader.dir/mmarray.c.o "CMakeFiles/loader.dir/reference-writer.c.o" "CMakeFiles/loader.dir/sequence-writer.c.o" /usr/bin/ranlib ../../ilib/libloader.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 18%] Built target ngs-doc_javadoc make -f libs/diagnose/CMakeFiles/diagnose.dir/build.make libs/diagnose/CMakeFiles/diagnose.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose/CMakeFiles/diagnose.dir/DependInfo.cmake "--color=" diagnose [ 18%] Built target loader make -f libs/schema/CMakeFiles/sra.dir/build.make libs/schema/CMakeFiles/sra.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/schema/CMakeFiles/sra.dir/DependInfo.cmake "--color=" sra make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/diagnose/CMakeFiles/diagnose.dir/build.make libs/diagnose/CMakeFiles/diagnose.dir/build /usr/bin/ar qc ../../ilib/libascp.a CMakeFiles/ascp.dir/ascp.c.o CMakeFiles/ascp.dir/unix/connect.c.o "CMakeFiles/ascp.dir/linux/ascp-path.c.o" /usr/bin/ranlib ../../ilib/libascp.a make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/schema/CMakeFiles/sra.dir/build.make libs/schema/CMakeFiles/sra.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 18%] Building C object libs/diagnose/CMakeFiles/diagnose.dir/diagnose.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/ascp\" -Darm64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/diagnose/CMakeFiles/diagnose.dir/diagnose.c.o -MF CMakeFiles/diagnose.dir/diagnose.c.o.d -o CMakeFiles/diagnose.dir/diagnose.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose/diagnose.c [ 19%] Built target ascp [ 19%] Building CXX object libs/schema/CMakeFiles/sra.dir/SraSchema.cpp.o [ 19%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-java.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-4.2/Modules/UseJava/Symlinks.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/schema && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/schema/CMakeFiles/sra.dir/SraSchema.cpp.o -MF CMakeFiles/sra.dir/SraSchema.cpp.o.d -o CMakeFiles/sra.dir/SraSchema.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema/SraSchema.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -MF CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o.d -o CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/ReferenceBlobIterator.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 19%] Building C object libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o [ 19%] Built target ngs-java cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/ascp\" -Darm64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o -MF CMakeFiles/diagnose.dir/endpoint.c.o.d -o CMakeFiles/diagnose.dir/endpoint.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose/endpoint.c [ 19%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/VdbAlignment.cpp make -f libs/search/CMakeFiles/ksrch.dir/build.make libs/search/CMakeFiles/ksrch.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search/CMakeFiles/ksrch.dir/DependInfo.cmake "--color=" ksrch [ 19%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -MF CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o.d -o CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/NGS-VDB.cpp [ 19%] Linking CXX executable ../../../test-bin/ngs-makedb cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-makedb.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/search/CMakeFiles/ksrch.dir/build.make libs/search/CMakeFiles/ksrch.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 19%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-dp.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-dp.c.o -MF CMakeFiles/ksrch.dir/agrep-dp.c.o.d -o CMakeFiles/ksrch.dir/agrep-dp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/agrep-dp.c [ 19%] Linking CXX static library ../../ilib/libsra.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/schema && /usr/bin/cmake -P CMakeFiles/sra.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/schema && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/ngs-makedb.dir/link.d "CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o" -o ../../../test-bin/ngs-makedb -Wl,-Bstatic -lktst -lkapp -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 19%] Built target ngs-makedb /usr/bin/ar qc ../../ilib/libsra.a CMakeFiles/sra.dir/SraSchema.cpp.o /usr/bin/ranlib ../../ilib/libsra.a [ 20%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-myers.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-myers.c.o -MF CMakeFiles/ksrch.dir/agrep-myers.c.o.d -o CMakeFiles/ksrch.dir/agrep-myers.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/agrep-myers.c make -f libs/general-writer/CMakeFiles/general-writer.dir/build.make libs/general-writer/CMakeFiles/general-writer.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/CMakeFiles/general-writer.dir/DependInfo.cmake "--color=" general-writer [ 20%] Built target sra make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/general-writer/CMakeFiles/general-writer.dir/build.make libs/general-writer/CMakeFiles/general-writer.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 20%] Building CXX object libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o -MF CMakeFiles/general-writer.dir/general-writer.cpp.o.d -o CMakeFiles/general-writer.dir/general-writer.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/general-writer.cpp [ 20%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o cd 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-c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/agrep-myersunltd.c make -f tools/loaders/bam-loader/CMakeFiles/bam-load.dir/build.make tools/loaders/bam-loader/CMakeFiles/bam-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader/CMakeFiles/bam-load.dir/DependInfo.cmake "--color=" bam-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam-loader.c.o -MF CMakeFiles/bam-load.dir/bam-loader.c.o.d -o CMakeFiles/bam-load.dir/bam-loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam-loader.c [ 20%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-wumanber.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-wumanber.c.o -MF CMakeFiles/ksrch.dir/agrep-wumanber.c.o.d -o CMakeFiles/ksrch.dir/agrep-wumanber.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/agrep-wumanber.c [ 20%] Linking CXX static library ../../ilib/libngs-vdb.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/cmake -P CMakeFiles/ngs-vdb.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-vdb.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libngs-vdb.a "CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o" "CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o" "CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o" "CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o" "CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o" "CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o" "CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o" "CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o" /usr/bin/ranlib ../../ilib/libngs-vdb.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 20%] Building C object libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -MF CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o.d -o CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/utf8-like-int-codec.c [ 20%] Built target ngs-vdb [ 20%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-aho.c.o cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/fgrep-aho.c make -f tools/loaders/bam-loader/CMakeFiles/samview.dir/build.make tools/loaders/bam-loader/CMakeFiles/samview.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader/CMakeFiles/samview.dir/DependInfo.cmake "--color=" samview [ 20%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam.c.o cd 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-I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/bam.c.o -MF CMakeFiles/samview.dir/bam.c.o.d -o CMakeFiles/samview.dir/bam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c [ 21%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-dumb.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG 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libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o -MF CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o.d -o CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/fgrep-boyermoore.c make -f tools/loaders/kar/CMakeFiles/kar.dir/build.make tools/loaders/kar/CMakeFiles/kar.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar/CMakeFiles/kar.dir/DependInfo.cmake "--color=" kar make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/kar/CMakeFiles/kar.dir/build.make tools/loaders/kar/CMakeFiles/kar.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 21%] Building C object tools/loaders/kar/CMakeFiles/kar.dir/kar-path.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar.dir/kar-path.c.o -MF CMakeFiles/kar.dir/kar-path.c.o.d -o CMakeFiles/kar.dir/kar-path.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar-path.c [ 21%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sam.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sam.c.o -MF CMakeFiles/bam-load.dir/sam.c.o.d -o CMakeFiles/bam-load.dir/sam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/sam.c [ 21%] Building C object tools/loaders/kar/CMakeFiles/kar.dir/kar-args.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar.dir/kar-args.c.o -MF CMakeFiles/kar.dir/kar-args.c.o.d -o CMakeFiles/kar.dir/kar-args.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar-args.c [ 21%] Building C object libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o -MF CMakeFiles/ksrch.dir/nucstrstr.c.o.d -o CMakeFiles/ksrch.dir/nucstrstr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c In function ‘nss_unary_expr’, inlined from ‘nss_expr’ at /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1415:13: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1387:29: warning: array subscript ‘NucStrExpr {aka NucStrstr}[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 1387 | e -> sub . type = type_EXPR; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1382:25: note: object of size 16 allocated by ‘malloc’ 1382 | NucStrExpr *e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1388:27: warning: array subscript ‘NucStrExpr {aka NucStrstr}[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 1388 | e -> sub . op = op_NOT; | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1382:25: note: object of size 16 allocated by ‘malloc’ 1382 | NucStrExpr *e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1389:29: warning: array subscript ‘NucStrExpr {aka NucStrstr}[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 1389 | e -> sub . expr = NULL; | ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1382:25: note: object of size 16 allocated by ‘malloc’ 1382 | NucStrExpr *e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘nss_primary_expr’, inlined from ‘nss_unary_expr’ at /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1367:16, inlined from ‘nss_expr’ at /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1415:13: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1306:29: warning: array subscript ‘NucStrExpr {aka NucStrstr}[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 1306 | e -> sub . type = type_EXPR; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1301:13: note: object of size 16 allocated by ‘malloc’ 1301 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1307:27: warning: array subscript ‘NucStrExpr {aka NucStrstr}[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 1307 | e -> sub . op = op_HEAD; | ~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1301:13: note: object of size 16 allocated by ‘malloc’ 1301 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1308:29: warning: array subscript ‘NucStrExpr {aka NucStrstr}[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 1308 | e -> sub . expr = NULL; | ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1301:13: note: object of size 16 allocated by ‘malloc’ 1301 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1321:29: warning: array subscript ‘NucStrExpr {aka NucStrstr}[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 1321 | e -> sub . type = type_EXPR; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1316:13: note: object of size 16 allocated by ‘malloc’ 1316 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1322:27: warning: array subscript ‘NucStrExpr {aka NucStrstr}[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 1322 | e -> sub . op = 0; | ~~~~~~~~~~~~~~^~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1316:13: note: object of size 16 allocated by ‘malloc’ 1316 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1328:31: warning: array subscript ‘NucStrExpr {aka NucStrstr}[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 1328 | if ( e -> sub . expr == NULL || p == end || * p ++ != ')' ) | ~~~~~~~~~^~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1316:13: note: object of size 16 allocated by ‘malloc’ 1316 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1348:33: warning: array subscript ‘NucStrExpr {aka NucStrstr}[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 1348 | e -> sub . type = type_EXPR; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1343:17: note: object of size 16 allocated by ‘malloc’ 1343 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1349:31: warning: array subscript ‘NucStrExpr {aka NucStrstr}[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 1349 | e -> sub . op = op_TAIL; | ~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1343:17: note: object of size 16 allocated by ‘malloc’ 1343 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1350:33: warning: array subscript ‘NucStrExpr {aka NucStrstr}[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 1350 | e -> sub . expr = * expr; | ~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1343:17: note: object of size 16 allocated by ‘malloc’ 1343 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c: In function ‘nss_expr’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1461:19: warning: array subscript ‘NucStrExpr {aka NucStrstr}[0]’ is partly outside array bounds of ‘unsigned char[24]’ [-Warray-bounds=] 1461 | e -> boolean . type = type_OP; | ^~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1454:21: note: object of size 24 allocated by ‘malloc’ 1454 | e = malloc ( sizeof e -> boolean ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1462:19: warning: array subscript ‘NucStrExpr {aka NucStrstr}[0]’ is partly outside array bounds of ‘unsigned char[24]’ [-Warray-bounds=] 1462 | e -> boolean . op = op; | ^~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1454:21: note: object of size 24 allocated by ‘malloc’ 1454 | e = malloc ( sizeof e -> boolean ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1463:19: warning: array subscript ‘NucStrExpr {aka NucStrstr}[0]’ is partly outside array bounds of ‘unsigned char[24]’ [-Warray-bounds=] 1463 | e -> boolean . left = * expr; | ^~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1454:21: note: object of size 24 allocated by ‘malloc’ 1454 | e = malloc ( sizeof e -> boolean ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 21%] Building C object tools/loaders/kar/CMakeFiles/kar.dir/kar.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar.dir/kar.c.o -MF CMakeFiles/kar.dir/kar.c.o.d -o CMakeFiles/kar.dir/kar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c: In function ‘BAM_FileMakeAlignment’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1777:14: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1777 | if (!BAM_AlignmentInit(y, rsltsize, datasize, &y->extra[numExtra])) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1697:13: note: by argument 4 of type ‘const void * const’ to ‘BAM_AlignmentInit’ declared here 1697 | static bool BAM_AlignmentInit(BAM_Alignment *const self, unsigned const maxsize, | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c: In function ‘BAM_FileMakeAlignment’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1777:14: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1777 | if (!BAM_AlignmentInit(y, rsltsize, datasize, &y->extra[numExtra])) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1697:13: note: by argument 4 of type ‘const void * const’ to ‘BAM_AlignmentInit’ declared here 1697 | static bool BAM_AlignmentInit(BAM_Alignment *const self, unsigned const maxsize, | ^~~~~~~~~~~~~~~~~ [ 22%] Linking C static library ../../ilib/libdiagnose.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose && /usr/bin/cmake -P CMakeFiles/diagnose.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/diagnose && /usr/bin/cmake -E cmake_link_script CMakeFiles/diagnose.dir/link.txt --verbose=1 [ 22%] Building C object libs/search/CMakeFiles/ksrch.dir/search.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/search.c.o -MF CMakeFiles/ksrch.dir/search.c.o.d -o CMakeFiles/ksrch.dir/search.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/search.c /usr/bin/ar qc ../../ilib/libdiagnose.a CMakeFiles/diagnose.dir/diagnose.c.o CMakeFiles/diagnose.dir/endpoint.c.o /usr/bin/ranlib ../../ilib/libdiagnose.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 22%] Built target diagnose make -f tools/loaders/kar/CMakeFiles/kar+.dir/build.make tools/loaders/kar/CMakeFiles/kar+.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar/CMakeFiles/kar+.dir/DependInfo.cmake "--color=" kar+ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/kar/CMakeFiles/kar+.dir/build.make tools/loaders/kar/CMakeFiles/kar+.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 22%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar-path.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb 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tools/loaders/kar/CMakeFiles/kar+meta.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar/CMakeFiles/kar+meta.dir/DependInfo.cmake "--color=" kar+meta [ 22%] Building C object libs/search/CMakeFiles/ksrch.dir/sw-search.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/sw-search.c.o -MF CMakeFiles/ksrch.dir/sw-search.c.o.d -o CMakeFiles/ksrch.dir/sw-search.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/sw-search.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/kar/CMakeFiles/kar+meta.dir/build.make tools/loaders/kar/CMakeFiles/kar+meta.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 22%] Building C object tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+util.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+util.c.o -MF CMakeFiles/kar+meta.dir/kar+util.c.o.d -o CMakeFiles/kar+meta.dir/kar+util.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+util.c [ 22%] Linking CXX static library ../../ilib/libgeneral-writer.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/cmake -P CMakeFiles/general-writer.dir/cmake_clean_target.cmake [ 22%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+print.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+print.c.o -MF CMakeFiles/kar+.dir/kar+print.c.o.d -o CMakeFiles/kar+.dir/kar+print.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+print.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/cmake -E cmake_link_script CMakeFiles/general-writer.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libgeneral-writer.a "CMakeFiles/general-writer.dir/general-writer.cpp.o" "CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o" /usr/bin/ranlib ../../ilib/libgeneral-writer.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 22%] Built target general-writer [ 22%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+util.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+util.c.o -MF CMakeFiles/kar+.dir/kar+util.c.o.d -o CMakeFiles/kar+.dir/kar+util.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+util.c [ 22%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/alignment-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/alignment-writer.c.o -MF CMakeFiles/bam-load.dir/alignment-writer.c.o.d -o CMakeFiles/bam-load.dir/alignment-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/alignment-writer.c [ 22%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/sam.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/sam.c.o -MF CMakeFiles/samview.dir/sam.c.o.d -o CMakeFiles/samview.dir/sam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/sam.c [ 22%] Linking CXX executable ../../../bin/kar cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cmake -E cmake_link_script CMakeFiles/kar.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/kar.dir/link.d "CMakeFiles/kar.dir/kar-path.c.o" "CMakeFiles/kar.dir/kar-args.c.o" CMakeFiles/kar.dir/kar.c.o -o ../../../bin/kar /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f kar.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv kar kar.3.2.1 [ 22%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+.c.o -MF CMakeFiles/kar+.dir/kar+.c.o.d -o CMakeFiles/kar+.dir/kar+.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kar.3.2.1 kar.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kar.3 kar make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 22%] Built target kar [ 22%] Building C object tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+meta.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/kar\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+meta.c.o -MF CMakeFiles/kar+meta.dir/kar+meta.c.o.d -o CMakeFiles/kar+meta.dir/kar+meta.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+meta.c [ 22%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/reference-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/reference-writer.c.o -MF CMakeFiles/bam-load.dir/reference-writer.c.o.d -o CMakeFiles/bam-load.dir/reference-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/reference-writer.c [ 22%] Linking C static library ../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cmake -P CMakeFiles/ksrch.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksrch.dir/link.txt --verbose=1 make -f tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/build.make tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/DependInfo.cmake "--color=" dump-blob-boundaries make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/build.make tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/ar qc ../../ilib/libksrch.a "CMakeFiles/ksrch.dir/agrep-dp.c.o" "CMakeFiles/ksrch.dir/agrep-myers.c.o" "CMakeFiles/ksrch.dir/agrep-myersunltd.c.o" "CMakeFiles/ksrch.dir/agrep-wumanber.c.o" "CMakeFiles/ksrch.dir/fgrep-aho.c.o" "CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o" "CMakeFiles/ksrch.dir/fgrep-dumb.c.o" CMakeFiles/ksrch.dir/nucstrstr.c.o CMakeFiles/ksrch.dir/search.c.o "CMakeFiles/ksrch.dir/sw-search.c.o" /usr/bin/ranlib ../../ilib/libksrch.a [ 22%] Building C object tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o -MF CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o.d -o CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/dump-blob-boundaries.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 22%] Built target ksrch make -f tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/DependInfo.cmake "--color=" sra-sort [ 22%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/samview.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/samview.c.o -MF CMakeFiles/samview.dir/samview.c.o.d -o CMakeFiles/samview.dir/samview.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/samview.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 22%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/caps.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/caps.c.o -MF CMakeFiles/sra-sort.dir/caps.c.o.d -o 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mem.c.o -MF CMakeFiles/sra-sort.dir/mem.c.o.d -o CMakeFiles/sra-sort.dir/mem.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mem.c /usr/lib/aarch64-linux-gnu/libncbi-vdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. [ 22%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sequence-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/membank.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv dump-blob-boundaries dump-blob-boundaries.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/build cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/membank.c.o -MF CMakeFiles/sra-sort.dir/membank.c.o.d -o CMakeFiles/sra-sort.dir/membank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/membank.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s dump-blob-boundaries.3.2.1 dump-blob-boundaries.3 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s dump-blob-boundaries.3 dump-blob-boundaries make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 22%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/caps.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/caps.c.o -MF CMakeFiles/sra-sort-cg.dir/caps.c.o.d -o CMakeFiles/sra-sort-cg.dir/caps.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/caps.c [ 22%] Built target dump-blob-boundaries [ 22%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mem.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mem.c.o -MF CMakeFiles/sra-sort-cg.dir/mem.c.o.d -o CMakeFiles/sra-sort-cg.dir/mem.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mem.c [ 22%] Linking CXX executable ../../../bin/samview cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/samview.dir/link.txt --verbose=1 [ 22%] Linking CXX executable ../../../bin/kar+meta cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cmake -E cmake_link_script CMakeFiles/kar+meta.dir/link.txt --verbose=1 make -f tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/build.make tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/DependInfo.cmake "--color=" fastqloader make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/build.make tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 22%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/membank.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/membank.c.o -MF CMakeFiles/sra-sort-cg.dir/membank.c.o.d -o CMakeFiles/sra-sort-cg.dir/membank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/membank.c [ 22%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/spot-assembler.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/spot-assembler.c.o -MF CMakeFiles/fastqloader.dir/spot-assembler.c.o.d -o CMakeFiles/fastqloader.dir/spot-assembler.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/spot-assembler.c [ 23%] Linking CXX executable ../../../bin/kar+ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/kar && /usr/bin/cmake -E cmake_link_script CMakeFiles/kar+.dir/link.txt --verbose=1 [ 24%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/loader-imp.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/loader-imp.c.o -MF CMakeFiles/bam-load.dir/loader-imp.c.o.d -o CMakeFiles/bam-load.dir/loader-imp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c [ 24%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-membank.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-membank.c.o -MF CMakeFiles/sra-sort.dir/paged-membank.c.o.d -o CMakeFiles/sra-sort.dir/paged-membank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-membank.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/kar+meta.dir/link.d CMakeFiles/kar+meta.dir/kar+util.c.o CMakeFiles/kar+meta.dir/kar+meta.c.o -o ../../../bin/kar+meta /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f kar+meta.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv kar+meta kar+meta.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kar+meta.3.2.1 kar+meta.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kar+meta.3 kar+meta make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/samview.dir/link.d CMakeFiles/samview.dir/bam.c.o CMakeFiles/samview.dir/sam.c.o CMakeFiles/samview.dir/samview.c.o -o ../../../bin/samview /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lz cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f samview.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv samview samview.3.2.1 [ 24%] Built target kar+meta cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s samview.3.2.1 samview.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s samview.3 samview make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 24%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-writer.c.o -MF CMakeFiles/fastqloader.dir/common-writer.c.o.d -o CMakeFiles/fastqloader.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-writer.c [ 24%] Built target samview /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/kar+.dir/link.d "CMakeFiles/kar+.dir/kar-path.c.o" CMakeFiles/kar+.dir/kar+args.c.o CMakeFiles/kar+.dir/kar+print.c.o CMakeFiles/kar+.dir/kar+util.c.o CMakeFiles/kar+.dir/kar+.c.o -o ../../../bin/kar+ /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f kar+.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv kar+ kar+.3.2.1 [ 25%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/sequence-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kar+.3.2.1 kar+.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/sequence-writer.c.o -MF CMakeFiles/fastqloader.dir/sequence-writer.c.o.d -o CMakeFiles/fastqloader.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/sequence-writer.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kar+.3 kar+ [ 26%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-membank.c.o [ 27%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-mmapbank.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-membank.c.o -MF CMakeFiles/sra-sort-cg.dir/paged-membank.c.o.d -o CMakeFiles/sra-sort-cg.dir/paged-membank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-membank.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-mmapbank.c.o -MF CMakeFiles/sra-sort.dir/paged-mmapbank.c.o.d -o CMakeFiles/sra-sort.dir/paged-mmapbank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-mmapbank.c [ 27%] Built target kar+ make -f tools/loaders/sharq/CMakeFiles/sharq.py.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.py.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq/CMakeFiles/sharq.py.dir/DependInfo.cmake "--color=" sharq.py make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/sharq/CMakeFiles/sharq.py.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.py.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq && /usr/bin/cmake -E copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/sharq.py /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq.py make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 27%] Built target sharq.py make -f tools/loaders/sra-load/CMakeFiles/sff-load.dir/build.make tools/loaders/sra-load/CMakeFiles/sff-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/sff-load.dir/DependInfo.cmake "--color=" sff-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/sra-load/CMakeFiles/sff-load.dir/build.make tools/loaders/sra-load/CMakeFiles/sff-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 27%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o -MF CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o.d -o CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-mmapbank.c [ 27%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/pstring.c.o cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c [ 27%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/except.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/fastq-load.dir/DependInfo.cmake "--color=" fastq-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/sra-load/CMakeFiles/fastq-load.dir/build.make tools/loaders/sra-load/CMakeFiles/fastq-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 27%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/idx-mapping.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/idx-mapping.c.o -MF CMakeFiles/sra-sort.dir/idx-mapping.c.o.d -o CMakeFiles/sra-sort.dir/idx-mapping.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/idx-mapping.c [ 27%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/pstring.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/pstring.c.o -MF CMakeFiles/fastq-load.dir/pstring.c.o.d -o CMakeFiles/fastq-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:3599:44: warning: ‘/*’ within comment [-Wcomment] 3599 | int const logLevel = klogWarn; /*G.assembleWithSecondary ? klogWarn : klogErr; /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:4332:48: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 4332 | rc = KLoaderMeta_Write(node, progName, __DATE__, "BAM", KAppVersion()); | ^~~~~~~~ [ 27%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/map-file.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/map-file.c.o -MF CMakeFiles/sra-sort.dir/map-file.c.o.d -o CMakeFiles/sra-sort.dir/map-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/map-file.c [ 27%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/except.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/except.c.o -MF CMakeFiles/sra-sort-cg.dir/except.c.o.d -o CMakeFiles/sra-sort-cg.dir/except.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/except.c [ 27%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/common-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/common-xml.c.o -MF CMakeFiles/sff-load.dir/common-xml.c.o.d -o CMakeFiles/sff-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c [ 27%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/mem-bank.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/mem-bank.cpp.o -MF CMakeFiles/bam-load.dir/mem-bank.cpp.o.d -o CMakeFiles/bam-load.dir/mem-bank.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/mem-bank.cpp [ 27%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o [ 27%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/common-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o -MF CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o.d -o CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/idx-mapping.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/common-xml.c.o -MF CMakeFiles/fastq-load.dir/common-xml.c.o.d -o CMakeFiles/fastq-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c [ 27%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-reader.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 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CMakeFiles/sra-sort-cg.dir/map-file.c.o.d -o CMakeFiles/sra-sort-cg.dir/map-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/map-file.c [ 27%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/col-pair.c.o [ 27%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/fastq-reader.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/fastq-reader.c.o -MF CMakeFiles/fastqloader.dir/fastq-reader.c.o.d -o CMakeFiles/fastqloader.dir/fastq-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/fastq-reader.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/col-pair.c.o -MF CMakeFiles/sra-sort.dir/col-pair.c.o.d -o CMakeFiles/sra-sort.dir/col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/col-pair.c [ 27%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/experiment-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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[ 27%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o -MF CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o.d -o CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-grammar.c [ 27%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/col-pair.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/col-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/col-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/col-pair.c [ 27%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/row-set.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux 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-D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/simple-row-set.c.o -MF CMakeFiles/sra-sort.dir/simple-row-set.c.o.d -o CMakeFiles/sra-sort.dir/simple-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/simple-row-set.c [ 27%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-misleading-indentation -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -MF CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o.d -o CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-lex.c [ 27%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mapping-row-set.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mapping-row-set.c.o -MF CMakeFiles/sra-sort.dir/mapping-row-set.c.o.d -o CMakeFiles/sra-sort.dir/mapping-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mapping-row-set.c [ 27%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/row-set.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mapping-row-set.c [ 27%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/run-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 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tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/meta-pair.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/dir-pair.c.o 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sorting-row-set.c [ 28%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/id2name.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-file.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/bam-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT 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-mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/tbl-pair.c.o -MF CMakeFiles/sra-sort.dir/tbl-pair.c.o.d -o CMakeFiles/sra-sort.dir/tbl-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/tbl-pair.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-file.c.o -MF CMakeFiles/sff-load.dir/loader-file.c.o.d -o CMakeFiles/sff-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c [ 29%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/meta-pair.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/meta-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/meta-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/meta-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/meta-pair.c [ 29%] Linking C static library ../../../ilib/libfastqloader.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -P CMakeFiles/fastqloader.dir/cmake_clean_target.cmake [ 29%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-file.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastqloader.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-file.c.o -MF CMakeFiles/fastq-load.dir/loader-file.c.o.d -o CMakeFiles/fastq-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c [ 30%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-fmt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-fmt.c.o -MF CMakeFiles/sff-load.dir/loader-fmt.c.o.d -o CMakeFiles/sff-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c /usr/bin/ar qc ../../../ilib/libfastqloader.a "CMakeFiles/fastqloader.dir/spot-assembler.c.o" "CMakeFiles/fastqloader.dir/common-writer.c.o" "CMakeFiles/fastqloader.dir/sequence-writer.c.o" "CMakeFiles/fastqloader.dir/common-reader.c.o" "CMakeFiles/fastqloader.dir/fastq-reader.c.o" "CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o" "CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o" CMakeFiles/fastqloader.dir/id2name.c.o /usr/bin/ranlib ../../../ilib/libfastqloader.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 30%] Built target fastqloader [ 30%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/sra-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/sra-writer.c.o -MF CMakeFiles/sff-load.dir/sra-writer.c.o.d -o CMakeFiles/sff-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c make -f tools/loaders/sra-load/CMakeFiles/srf-load.dir/build.make tools/loaders/sra-load/CMakeFiles/srf-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/srf-load.dir/DependInfo.cmake "--color=" srf-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/sra-load/CMakeFiles/srf-load.dir/build.make tools/loaders/sra-load/CMakeFiles/srf-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 30%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-fmt.c.o [ 30%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/dir-pair.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-fmt.c.o -MF CMakeFiles/fastq-load.dir/loader-fmt.c.o.d -o CMakeFiles/fastq-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/dir-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/dir-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/dir-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/dir-pair.c [ 30%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/pstring.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/pstring.c.o -MF CMakeFiles/srf-load.dir/pstring.c.o.d -o CMakeFiles/srf-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c [ 30%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/sra-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/sra-writer.c.o -MF CMakeFiles/fastq-load.dir/sra-writer.c.o.d -o CMakeFiles/fastq-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c [ 30%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/db-pair.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/db-pair.c.o -MF CMakeFiles/sra-sort.dir/db-pair.c.o.d -o CMakeFiles/sra-sort.dir/db-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/db-pair.c [ 30%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader.c.o [ 30%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/common-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader.c.o -MF CMakeFiles/sff-load.dir/loader.c.o.d -o CMakeFiles/sff-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/common-xml.c.o -MF CMakeFiles/srf-load.dir/common-xml.c.o.d -o CMakeFiles/srf-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c [ 30%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/tbl-pair.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function ‘WriteSoftwareVersionsMeta’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); | ^~~~~~~~ In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:113: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/hashing.hpp:214:7: warning: ‘sha1_filter’ has a base ‘sha_filter’ which has internal linkage [-Wsubobject-linkage] 214 | class sha1_filter : public sha_filter | ^~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/hashing.hpp:218:7: warning: ‘sha224_filter’ has a base ‘sha_filter’ which has internal linkage [-Wsubobject-linkage] 218 | class sha224_filter : public sha_filter | ^~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/hashing.hpp:222:7: warning: ‘sha256_filter’ has a base ‘sha_filter’ which has internal linkage [-Wsubobject-linkage] 222 | class sha256_filter : public sha_filter | ^~~~~~~~~~~~~ [ 30%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/experiment-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/experiment-xml.c.o -MF CMakeFiles/srf-load.dir/experiment-xml.c.o.d -o CMakeFiles/srf-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c [ 30%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader.c.o -MF CMakeFiles/fastq-load.dir/loader.c.o.d -o CMakeFiles/fastq-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function ‘WriteSoftwareVersionsMeta’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); | ^~~~~~~~ [ 30%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/glob-poslen.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/glob-poslen.c.o -MF CMakeFiles/sra-sort.dir/glob-poslen.c.o.d -o CMakeFiles/sra-sort.dir/glob-poslen.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/glob-poslen.c [ 30%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/poslen-col-pair.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -MF CMakeFiles/sra-sort.dir/poslen-col-pair.c.o.d -o CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/poslen-col-pair.c [ 30%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/db-pair.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/db-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/db-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/db-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/db-pair.c [ 31%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-illumina.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-illumina.c.o -MF CMakeFiles/fastq-load.dir/writer-illumina.c.o.d -o CMakeFiles/fastq-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-illumina.c [ 31%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/ref-alignid-col.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -MF CMakeFiles/sra-sort.dir/ref-alignid-col.c.o.d -o CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/ref-alignid-col.c [ 31%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-454.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-454.c.o -MF CMakeFiles/sff-load.dir/writer-454.c.o.d -o CMakeFiles/sff-load.dir/writer-454.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-454.c [ 31%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/run-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/run-xml.c.o -MF CMakeFiles/srf-load.dir/run-xml.c.o.d -o CMakeFiles/srf-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c [ 31%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -MF CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o.d -o CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/glob-poslen.c [ 31%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/buff-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/buff-writer.c.o -MF CMakeFiles/sra-sort.dir/buff-writer.c.o.d -o CMakeFiles/sra-sort.dir/buff-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/buff-writer.c [ 31%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-454.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-454.c.o -MF CMakeFiles/fastq-load.dir/writer-454.c.o.d -o CMakeFiles/fastq-load.dir/writer-454.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-454.c [ 31%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-ion-torrent.c.o [ 31%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/sff-fmt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-ion-torrent.c.o -MF CMakeFiles/sff-load.dir/writer-ion-torrent.c.o.d -o CMakeFiles/sff-load.dir/writer-ion-torrent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-ion-torrent.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/sff-fmt.c.o -MF CMakeFiles/sff-load.dir/sff-fmt.c.o.d -o CMakeFiles/sff-load.dir/sff-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sff-fmt.c [ 31%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/poslen-col-pair.c [ 31%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-file.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-file.c.o -MF CMakeFiles/srf-load.dir/loader-file.c.o.d -o CMakeFiles/srf-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c [ 31%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o -MF CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o.d -o CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-ion-torrent.c [ 31%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o -MF CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o.d -o CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/ref-alignid-col.c [ 31%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/id-mapper-col.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/id-mapper-col.c.o -MF CMakeFiles/sra-sort.dir/id-mapper-col.c.o.d -o CMakeFiles/sra-sort.dir/id-mapper-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/id-mapper-col.c [ 31%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/fastq-fmt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/fastq-fmt.c.o -MF CMakeFiles/fastq-load.dir/fastq-fmt.c.o.d -o CMakeFiles/fastq-load.dir/fastq-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/fastq-fmt.c [ 31%] Linking CXX executable ../../../bin/sff-load cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/sff-load.dir/link.txt --verbose=1 [ 32%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-fmt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-fmt.c.o -MF CMakeFiles/srf-load.dir/loader-fmt.c.o.d -o CMakeFiles/srf-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c [ 32%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -MF CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o.d -o CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/capture-first-half-aligned.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/sff-load.dir/link.d "CMakeFiles/sff-load.dir/pstring.c.o" "CMakeFiles/sff-load.dir/common-xml.c.o" "CMakeFiles/sff-load.dir/experiment-xml.c.o" "CMakeFiles/sff-load.dir/run-xml.c.o" "CMakeFiles/sff-load.dir/loader-file.c.o" "CMakeFiles/sff-load.dir/loader-fmt.c.o" "CMakeFiles/sff-load.dir/sra-writer.c.o" "CMakeFiles/sff-load.dir/loader.c.o" "CMakeFiles/sff-load.dir/writer-454.c.o" "CMakeFiles/sff-load.dir/writer-ion-torrent.c.o" "CMakeFiles/sff-load.dir/sff-fmt.c.o" -o ../../../bin/sff-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sff-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sff-load sff-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sff-load.3.2.1 sff-load.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sff-load.3 sff-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 32%] Built target sff-load [ 32%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/sra-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/sra-writer.c.o -MF CMakeFiles/srf-load.dir/sra-writer.c.o.d -o CMakeFiles/srf-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c [ 33%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/run.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/run.c.o -MF CMakeFiles/sra-sort.dir/run.c.o.d -o CMakeFiles/sra-sort.dir/run.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/run.c [ 33%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader.c.o -MF CMakeFiles/srf-load.dir/loader.c.o.d -o CMakeFiles/srf-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c [ 33%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/buff-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -MF CMakeFiles/sra-sort-cg.dir/buff-writer.c.o.d -o CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/buff-writer.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function ‘WriteSoftwareVersionsMeta’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); | ^~~~~~~~ [ 33%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf.c.o -MF CMakeFiles/srf-load.dir/srf.c.o.d -o CMakeFiles/srf-load.dir/srf.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf.c [ 33%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sra-sort.c.o [ 33%] Linking CXX executable ../../../bin/fastq-load cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sra-sort.c.o -MF CMakeFiles/sra-sort.dir/sra-sort.c.o.d -o CMakeFiles/sra-sort.dir/sra-sort.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sra-sort.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastq-load.dir/link.txt --verbose=1 make -f tools/loaders/sra-load/CMakeFiles/abi-load.dir/build.make tools/loaders/sra-load/CMakeFiles/abi-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/abi-load.dir/DependInfo.cmake "--color=" abi-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/sra-load/CMakeFiles/abi-load.dir/build.make tools/loaders/sra-load/CMakeFiles/abi-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 33%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/pstring.c.o [ 33%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/common-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/pstring.c.o -MF CMakeFiles/abi-load.dir/pstring.c.o.d -o CMakeFiles/abi-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/common-xml.c.o -MF CMakeFiles/abi-load.dir/common-xml.c.o.d -o CMakeFiles/abi-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/fastq-load.dir/link.d "CMakeFiles/fastq-load.dir/pstring.c.o" "CMakeFiles/fastq-load.dir/common-xml.c.o" "CMakeFiles/fastq-load.dir/experiment-xml.c.o" "CMakeFiles/fastq-load.dir/run-xml.c.o" "CMakeFiles/fastq-load.dir/loader-file.c.o" "CMakeFiles/fastq-load.dir/loader-fmt.c.o" "CMakeFiles/fastq-load.dir/sra-writer.c.o" "CMakeFiles/fastq-load.dir/loader.c.o" "CMakeFiles/fastq-load.dir/writer-illumina.c.o" "CMakeFiles/fastq-load.dir/writer-454.c.o" "CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o" "CMakeFiles/fastq-load.dir/fastq-fmt.c.o" -o ../../../bin/fastq-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f fastq-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv fastq-load fastq-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastq-load.3.2.1 fastq-load.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastq-load.3 fastq-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 33%] Built target fastq-load make -f tools/loaders/sra-load/CMakeFiles/illumina-load.dir/build.make tools/loaders/sra-load/CMakeFiles/illumina-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/illumina-load.dir/DependInfo.cmake "--color=" illumina-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/sra-load/CMakeFiles/illumina-load.dir/build.make tools/loaders/sra-load/CMakeFiles/illumina-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 33%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o -MF CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o.d -o CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/id-mapper-col.c [ 33%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-fmt.c.o [ 33%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/pstring.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-fmt.c.o -MF CMakeFiles/srf-load.dir/srf-fmt.c.o.d -o CMakeFiles/srf-load.dir/srf-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf-fmt.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/pstring.c.o -MF CMakeFiles/illumina-load.dir/pstring.c.o.d -o CMakeFiles/illumina-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c [ 33%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 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/usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o -MF CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o.d -o CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/capture-first-half-aligned.c [ 35%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/common-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/common-xml.c.o -MF CMakeFiles/illumina-load.dir/common-xml.c.o.d -o CMakeFiles/illumina-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c [ 35%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-tbl.c.o make -f tools/loaders/sra-load/CMakeFiles/helicos-load.dir/build.make tools/loaders/sra-load/CMakeFiles/helicos-load.dir/depend cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-tbl.c.o -MF CMakeFiles/sra-sort.dir/csra-tbl.c.o.d -o CMakeFiles/sra-sort.dir/csra-tbl.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-tbl.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/helicos-load.dir/DependInfo.cmake "--color=" helicos-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/sra-load/CMakeFiles/helicos-load.dir/build.make tools/loaders/sra-load/CMakeFiles/helicos-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 35%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/pstring.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/pstring.c.o -MF CMakeFiles/helicos-load.dir/pstring.c.o.d -o CMakeFiles/helicos-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c [ 35%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-illumina.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-illumina.c.o -MF CMakeFiles/srf-load.dir/writer-illumina.c.o.d -o 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Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/common-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/common-xml.c.o -MF CMakeFiles/helicos-load.dir/common-xml.c.o.d -o CMakeFiles/helicos-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c [ 35%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sra-sort.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -MF CMakeFiles/sra-sort-cg.dir/sra-sort.c.o.d -o CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sra-sort.c [ 35%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-pair.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-pair.c.o -MF CMakeFiles/sra-sort.dir/csra-pair.c.o.d -o CMakeFiles/sra-sort.dir/csra-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-pair.c [ 35%] Linking CXX executable ../../../bin/sra-sort cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-sort.dir/link.txt --verbose=1 [ 35%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/experiment-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/experiment-xml.c.o -MF CMakeFiles/illumina-load.dir/experiment-xml.c.o.d -o CMakeFiles/illumina-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c [ 35%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-illumina.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-illumina.c.o -MF CMakeFiles/srf-load.dir/ztr-illumina.c.o.d -o CMakeFiles/srf-load.dir/ztr-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/ztr-illumina.c [ 35%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -MF CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o.d -o CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/xcheck-ref-align.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/sra-sort.dir/link.d "CMakeFiles/sra-sort.dir/caps.c.o" "CMakeFiles/sra-sort.dir/mem.c.o" "CMakeFiles/sra-sort.dir/membank.c.o" "CMakeFiles/sra-sort.dir/paged-membank.c.o" "CMakeFiles/sra-sort.dir/paged-mmapbank.c.o" "CMakeFiles/sra-sort.dir/except.c.o" "CMakeFiles/sra-sort.dir/idx-mapping.c.o" "CMakeFiles/sra-sort.dir/map-file.c.o" "CMakeFiles/sra-sort.dir/col-pair.c.o" "CMakeFiles/sra-sort.dir/row-set.c.o" "CMakeFiles/sra-sort.dir/simple-row-set.c.o" "CMakeFiles/sra-sort.dir/mapping-row-set.c.o" "CMakeFiles/sra-sort.dir/sorting-row-set.c.o" "CMakeFiles/sra-sort.dir/meta-pair.c.o" "CMakeFiles/sra-sort.dir/dir-pair.c.o" "CMakeFiles/sra-sort.dir/tbl-pair.c.o" "CMakeFiles/sra-sort.dir/db-pair.c.o" "CMakeFiles/sra-sort.dir/glob-poslen.c.o" "CMakeFiles/sra-sort.dir/poslen-col-pair.c.o" "CMakeFiles/sra-sort.dir/ref-alignid-col.c.o" "CMakeFiles/sra-sort.dir/buff-writer.c.o" "CMakeFiles/sra-sort.dir/id-mapper-col.c.o" "CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o" "CMakeFiles/sra-sort.dir/run.c.o" "CMakeFiles/sra-sort.dir/sra-sort.c.o" "CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o" "CMakeFiles/sra-sort.dir/csra-tbl.c.o" "CMakeFiles/sra-sort.dir/csra-pair.c.o" -o ../../../bin/sra-sort /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lbz2 -llzma cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-sort.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-sort sra-sort.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-sort.3.2.1 sra-sort.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-sort.3 sra-sort make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 35%] Built target sra-sort [ 36%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/experiment-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/experiment-xml.c.o -MF CMakeFiles/helicos-load.dir/experiment-xml.c.o.d -o CMakeFiles/helicos-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c [ 36%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/run-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/run-xml.c.o -MF CMakeFiles/abi-load.dir/run-xml.c.o.d -o CMakeFiles/abi-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c [ 36%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -MF CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o.d -o CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-tbl.c [ 36%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-file.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-file.c.o -MF CMakeFiles/abi-load.dir/loader-file.c.o.d -o CMakeFiles/abi-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c [ 36%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-illumina.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-illumina.c.o -MF CMakeFiles/srf-load.dir/srf-illumina.c.o.d -o CMakeFiles/srf-load.dir/srf-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf-illumina.c [ 36%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-pair.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-sort\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/csra-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/csra-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-pair.c [ 36%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/run-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/run-xml.c.o -MF CMakeFiles/illumina-load.dir/run-xml.c.o.d -o CMakeFiles/illumina-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c [ 36%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-fmt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-fmt.c.o -MF CMakeFiles/abi-load.dir/loader-fmt.c.o.d -o CMakeFiles/abi-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c make -f tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/build.make tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/DependInfo.cmake "--color=" pacbio-loadxml [ 36%] Linking CXX executable ../../../bin/sra-sort-cg cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-sort-cg.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/build.make tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 36%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pstring.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pstring.c.o -MF CMakeFiles/pacbio-loadxml.dir/pstring.c.o.d -o CMakeFiles/pacbio-loadxml.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c [ 36%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-absolid.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-absolid.c.o -MF CMakeFiles/srf-load.dir/writer-absolid.c.o.d -o CMakeFiles/srf-load.dir/writer-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-absolid.c [ 36%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/sra-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/sra-writer.c.o -MF CMakeFiles/abi-load.dir/sra-writer.c.o.d -o CMakeFiles/abi-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/sra-sort-cg.dir/link.d "CMakeFiles/sra-sort-cg.dir/caps.c.o" "CMakeFiles/sra-sort-cg.dir/mem.c.o" "CMakeFiles/sra-sort-cg.dir/membank.c.o" "CMakeFiles/sra-sort-cg.dir/paged-membank.c.o" "CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o" "CMakeFiles/sra-sort-cg.dir/except.c.o" "CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o" "CMakeFiles/sra-sort-cg.dir/map-file.c.o" "CMakeFiles/sra-sort-cg.dir/col-pair.c.o" "CMakeFiles/sra-sort-cg.dir/row-set.c.o" "CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/meta-pair.c.o" "CMakeFiles/sra-sort-cg.dir/dir-pair.c.o" "CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o" "CMakeFiles/sra-sort-cg.dir/db-pair.c.o" "CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o" "CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o" "CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o" "CMakeFiles/sra-sort-cg.dir/buff-writer.c.o" "CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o" "CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o" "CMakeFiles/sra-sort-cg.dir/run.c.o" "CMakeFiles/sra-sort-cg.dir/sra-sort.c.o" "CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o" "CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o" "CMakeFiles/sra-sort-cg.dir/csra-pair.c.o" -o ../../../bin/sra-sort-cg /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lbz2 -llzma cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-sort-cg.3.2.1 [ 36%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/run-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-sort-cg sra-sort-cg.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/run-xml.c.o -MF CMakeFiles/helicos-load.dir/run-xml.c.o.d -o CMakeFiles/helicos-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-sort-cg.3.2.1 sra-sort-cg.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-sort-cg.3 sra-sort-cg make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 36%] Built target sra-sort-cg [ 36%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/common-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/common-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/common-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c [ 36%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-absolid.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-absolid.c.o -MF CMakeFiles/srf-load.dir/ztr-absolid.c.o.d -o CMakeFiles/srf-load.dir/ztr-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/ztr-absolid.c [ 37%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader.c.o -MF CMakeFiles/abi-load.dir/loader.c.o.d -o CMakeFiles/abi-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c [ 37%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c [ 37%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-file.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-file.c.o -MF CMakeFiles/illumina-load.dir/loader-file.c.o.d -o CMakeFiles/illumina-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function ‘WriteSoftwareVersionsMeta’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); | ^~~~~~~~ [ 38%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-huffman.c.o [ 38%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-fmt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-huffman.c.o 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-file.c.o -MF CMakeFiles/helicos-load.dir/loader-file.c.o.d -o CMakeFiles/helicos-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c [ 38%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/sra-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/sra-writer.c.o -MF CMakeFiles/illumina-load.dir/sra-writer.c.o.d -o CMakeFiles/illumina-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c [ 38%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/writer-absolid.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/writer-absolid.c.o -MF CMakeFiles/abi-load.dir/writer-absolid.c.o.d -o CMakeFiles/abi-load.dir/writer-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-absolid.c [ 38%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-fmt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-fmt.c.o -MF CMakeFiles/helicos-load.dir/loader-fmt.c.o.d -o CMakeFiles/helicos-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c [ 38%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/sra-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/sra-writer.c.o -MF CMakeFiles/helicos-load.dir/sra-writer.c.o.d -o CMakeFiles/helicos-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c [ 38%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-absolid.c.o [ 38%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-absolid.c.o -MF CMakeFiles/srf-load.dir/srf-absolid.c.o.d -o CMakeFiles/srf-load.dir/srf-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf-absolid.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader.c.o -MF CMakeFiles/illumina-load.dir/loader.c.o.d -o CMakeFiles/illumina-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c [ 38%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/run-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX 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tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-file.c.o [ 38%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/absolid-fmt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-file.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader-file.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/absolid-fmt.c.o -MF CMakeFiles/abi-load.dir/absolid-fmt.c.o.d -o CMakeFiles/abi-load.dir/absolid-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/absolid-fmt.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function ‘WriteSoftwareVersionsMeta’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); | ^~~~~~~~ make -f tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/build.make tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/DependInfo.cmake "--color=" pacbio-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/build.make tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 38%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader.c.o -MF CMakeFiles/helicos-load.dir/loader.c.o.d -o CMakeFiles/helicos-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c [ 38%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o -MF CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o.d -o CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/hdf5/hdf5arrayfile.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function ‘WriteSoftwareVersionsMeta’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); | ^~~~~~~~ [ 38%] Linking CXX executable ../../../bin/srf-load cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/srf-load.dir/link.txt --verbose=1 [ 38%] Linking CXX executable ../../../bin/abi-load cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/abi-load.dir/link.txt --verbose=1 [ 38%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/srf-load.dir/link.d "CMakeFiles/srf-load.dir/pstring.c.o" "CMakeFiles/srf-load.dir/common-xml.c.o" "CMakeFiles/srf-load.dir/experiment-xml.c.o" "CMakeFiles/srf-load.dir/run-xml.c.o" "CMakeFiles/srf-load.dir/loader-file.c.o" "CMakeFiles/srf-load.dir/loader-fmt.c.o" "CMakeFiles/srf-load.dir/sra-writer.c.o" "CMakeFiles/srf-load.dir/loader.c.o" "CMakeFiles/srf-load.dir/srf.c.o" "CMakeFiles/srf-load.dir/srf-fmt.c.o" "CMakeFiles/srf-load.dir/writer-illumina.c.o" "CMakeFiles/srf-load.dir/ztr-illumina.c.o" "CMakeFiles/srf-load.dir/srf-illumina.c.o" "CMakeFiles/srf-load.dir/writer-absolid.c.o" "CMakeFiles/srf-load.dir/ztr-absolid.c.o" "CMakeFiles/srf-load.dir/ztr-huffman.c.o" "CMakeFiles/srf-load.dir/srf-absolid.c.o" -o ../../../bin/srf-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f srf-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv srf-load srf-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s srf-load.3.2.1 srf-load.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s srf-load.3 srf-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 38%] Built target srf-load [ 38%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o -MF CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o.d -o CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/hdf5/hdf5dir.c [ 38%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o -MF CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o.d -o CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/hdf5/hdf5file.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/abi-load.dir/link.d "CMakeFiles/abi-load.dir/pstring.c.o" "CMakeFiles/abi-load.dir/common-xml.c.o" "CMakeFiles/abi-load.dir/experiment-xml.c.o" "CMakeFiles/abi-load.dir/run-xml.c.o" "CMakeFiles/abi-load.dir/loader-file.c.o" "CMakeFiles/abi-load.dir/loader-fmt.c.o" "CMakeFiles/abi-load.dir/sra-writer.c.o" "CMakeFiles/abi-load.dir/loader.c.o" "CMakeFiles/abi-load.dir/writer-absolid.c.o" "CMakeFiles/abi-load.dir/absolid-fmt.c.o" -o ../../../bin/abi-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f abi-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv abi-load abi-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s abi-load.3.2.1 abi-load.3 [ 38%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s abi-load.3 abi-load cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -MF CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o.d -o CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 38%] Built target abi-load [ 38%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/writer-illumina.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/writer-illumina.c.o -MF CMakeFiles/illumina-load.dir/writer-illumina.c.o.d -o CMakeFiles/illumina-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-illumina.c [ 39%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c [ 40%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-context.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-context.c.o -MF CMakeFiles/pacbio-load.dir/pl-context.c.o.d -o CMakeFiles/pacbio-load.dir/pl-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-context.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function ‘WriteSoftwareVersionsMeta’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); | ^~~~~~~~ make -f tools/loaders/cg-load/CMakeFiles/cg-load.dir/build.make tools/loaders/cg-load/CMakeFiles/cg-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load/CMakeFiles/cg-load.dir/DependInfo.cmake "--color=" cg-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/cg-load/CMakeFiles/cg-load.dir/build.make tools/loaders/cg-load/CMakeFiles/cg-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 40%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/cg-load.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/cg-load.c.o -MF CMakeFiles/cg-load.dir/cg-load.c.o.d -o CMakeFiles/cg-load.dir/cg-load.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/cg-load.c [ 40%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-tools.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-tools.c.o -MF CMakeFiles/pacbio-load.dir/pl-tools.c.o.d -o CMakeFiles/pacbio-load.dir/pl-tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-tools.c [ 40%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/illumina-fmt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/illumina-fmt.c.o -MF CMakeFiles/illumina-load.dir/illumina-fmt.c.o.d -o CMakeFiles/illumina-load.dir/illumina-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/illumina-fmt.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/cg-load.c: In function ‘DB_Fini’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/cg-load.c:229:65: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 229 | if( (rc = KLoaderMeta_Write(node, p->argv0, __DATE__, "Complete Genomics", KAppVersion())) != 0 ) { | ^~~~~~~~ [ 40%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/writer-helicos.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/writer-helicos.c.o -MF CMakeFiles/helicos-load.dir/writer-helicos.c.o.d -o CMakeFiles/helicos-load.dir/writer-helicos.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-helicos.c [ 40%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/helicos-fmt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/helicos-fmt.c.o -MF CMakeFiles/helicos-load.dir/helicos-fmt.c.o.d -o CMakeFiles/helicos-load.dir/helicos-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/helicos-fmt.c make -f tools/loaders/general-loader/CMakeFiles/general-loader.dir/build.make tools/loaders/general-loader/CMakeFiles/general-loader.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/CMakeFiles/general-loader.dir/DependInfo.cmake "--color=" general-loader make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/general-loader/CMakeFiles/general-loader.dir/build.make tools/loaders/general-loader/CMakeFiles/general-loader.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 40%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/general-loader.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/general-loader.cpp.o -MF CMakeFiles/general-loader.dir/general-loader.cpp.o.d -o CMakeFiles/general-loader.dir/general-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/general-loader.cpp [ 40%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-zmw.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-zmw.c.o -MF CMakeFiles/pacbio-load.dir/pl-zmw.c.o.d -o CMakeFiles/pacbio-load.dir/pl-zmw.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-zmw.c [ 40%] Linking CXX executable ../../../bin/helicos-load cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/helicos-load.dir/link.txt --verbose=1 [ 41%] Linking CXX executable ../../../bin/illumina-load cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/illumina-load.dir/link.txt --verbose=1 [ 41%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o -MF CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o.d -o CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-basecalls_cmn.c [ 41%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -MF CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o.d -o CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pacbio-fmt.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/helicos-load.dir/link.d "CMakeFiles/helicos-load.dir/pstring.c.o" "CMakeFiles/helicos-load.dir/common-xml.c.o" "CMakeFiles/helicos-load.dir/experiment-xml.c.o" "CMakeFiles/helicos-load.dir/run-xml.c.o" "CMakeFiles/helicos-load.dir/loader-file.c.o" "CMakeFiles/helicos-load.dir/loader-fmt.c.o" "CMakeFiles/helicos-load.dir/sra-writer.c.o" "CMakeFiles/helicos-load.dir/loader.c.o" "CMakeFiles/helicos-load.dir/writer-helicos.c.o" "CMakeFiles/helicos-load.dir/helicos-fmt.c.o" -o ../../../bin/helicos-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f helicos-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv helicos-load helicos-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s helicos-load.3.2.1 helicos-load.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s helicos-load.3 helicos-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 41%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o [ 41%] Built target helicos-load cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o -MF CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o.d -o CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-evidence-intervals.c [ 41%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-sequence.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-sequence.c.o -MF CMakeFiles/pacbio-load.dir/pl-sequence.c.o.d -o CMakeFiles/pacbio-load.dir/pl-sequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-sequence.c [ 41%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/protocol-parser.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/protocol-parser.cpp.o -MF CMakeFiles/general-loader.dir/protocol-parser.cpp.o.d -o CMakeFiles/general-loader.dir/protocol-parser.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/protocol-parser.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/illumina-load.dir/link.d "CMakeFiles/illumina-load.dir/pstring.c.o" "CMakeFiles/illumina-load.dir/common-xml.c.o" "CMakeFiles/illumina-load.dir/experiment-xml.c.o" "CMakeFiles/illumina-load.dir/run-xml.c.o" "CMakeFiles/illumina-load.dir/loader-file.c.o" "CMakeFiles/illumina-load.dir/loader-fmt.c.o" "CMakeFiles/illumina-load.dir/sra-writer.c.o" "CMakeFiles/illumina-load.dir/loader.c.o" "CMakeFiles/illumina-load.dir/writer-illumina.c.o" "CMakeFiles/illumina-load.dir/illumina-fmt.c.o" -o ../../../bin/illumina-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f illumina-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv illumina-load illumina-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s illumina-load.3.2.1 illumina-load.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s illumina-load.3 illumina-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 41%] Built target illumina-load make -f tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build.make tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/DependInfo.cmake "--color=" kdbmeta [ 41%] Linking CXX executable ../../../bin/pacbio-loadxml cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-loadxml.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build.make tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 41%] Building C object tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/kdbmeta.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/kdbmeta && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/util\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/kdbmeta.c.o -MF CMakeFiles/kdbmeta.dir/kdbmeta.c.o.d -o CMakeFiles/kdbmeta.dir/kdbmeta.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/kdbmeta/kdbmeta.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/pacbio-loadxml.dir/link.d "CMakeFiles/pacbio-loadxml.dir/pstring.c.o" "CMakeFiles/pacbio-loadxml.dir/common-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/run-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/loader-file.c.o" "CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o" "CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o" "CMakeFiles/pacbio-loadxml.dir/loader.c.o" "CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o" -o ../../../bin/pacbio-loadxml ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libxml2.so ../../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f pacbio-loadxml.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv pacbio-loadxml pacbio-loadxml.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-loadxml.3.2.1 pacbio-loadxml.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-loadxml.3 pacbio-loadxml make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 41%] Built target pacbio-loadxml [ 41%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-consensus.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-consensus.c.o -MF CMakeFiles/pacbio-load.dir/pl-consensus.c.o.d -o CMakeFiles/pacbio-load.dir/pl-consensus.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-consensus.c [ 41%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o -MF CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o.d -o CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-evidence-dnbs.c make -f tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build.make tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/DependInfo.cmake "--color=" makeinputs make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build.make tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 41%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/makeinputs.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/makeinputs.cpp.o -MF CMakeFiles/makeinputs.dir/makeinputs.cpp.o.d -o CMakeFiles/makeinputs.dir/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/makeinputs.cpp [ 41%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/testsource.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/testsource.cpp.o -MF CMakeFiles/makeinputs.dir/testsource.cpp.o.d -o CMakeFiles/makeinputs.dir/testsource.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp [ 41%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-passes.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-passes.c.o -MF CMakeFiles/pacbio-load.dir/pl-passes.c.o.d -o CMakeFiles/pacbio-load.dir/pl-passes.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-passes.c [ 41%] Linking CXX executable ../../../bin/kdbmeta cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/kdbmeta && /usr/bin/cmake -E cmake_link_script CMakeFiles/kdbmeta.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/kdbmeta.dir/link.d CMakeFiles/kdbmeta.dir/kdbmeta.c.o -o ../../../bin/kdbmeta /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f kdbmeta.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv kdbmeta kdbmeta.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kdbmeta.3.2.1 kdbmeta.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kdbmeta.3 kdbmeta make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 41%] Built target kdbmeta [ 41%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/database-loader.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/database-loader.cpp.o -MF CMakeFiles/general-loader.dir/database-loader.cpp.o.d -o CMakeFiles/general-loader.dir/database-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/database-loader.cpp [ 41%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-metrics.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-metrics.c.o -MF CMakeFiles/pacbio-load.dir/pl-metrics.c.o.d -o CMakeFiles/pacbio-load.dir/pl-metrics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-metrics.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/database-loader.cpp:833:90: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 833 | rc = KLoaderMeta_WriteWithVersion ( node, m_programName.c_str(), __DATE__, KAppVersion(), m_softwareName.c_str(), m_softwareVersion ); | ^~~~~~~~ [ 41%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-mappings.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-mappings.c.o -MF CMakeFiles/cg-load.dir/factory-mappings.c.o.d -o CMakeFiles/cg-load.dir/factory-mappings.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp: In constructor ‘TestSource::Buffer::Buffer(const std::string&, uint32_t, uint32_t, bool)’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp:47:13: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 8 equals destination size [-Wstringop-truncation] 47 | strncpy ( m_header . dad . signature, p_signature . c_str(), sizeof m_header . dad . signature ); | ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c: In function ‘CGMappings15_Read’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:248:16: warning: ‘tmp’ may be used uninitialized [-Wmaybe-uninitialized] 248 | if( tmp[0] < 33 || tmp[0] > 126 ) { | ~~~^~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:225:14: note: ‘tmp’ declared here 225 | char tmp[2]; | ^~~ [ 41%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-regions.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-regions.c.o -MF CMakeFiles/pacbio-load.dir/pl-regions.c.o.d -o CMakeFiles/pacbio-load.dir/pl-regions.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-regions.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c: In function ‘CGMappings22_Read’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:311:16: warning: ‘tmp’ may be used uninitialized [-Wmaybe-uninitialized] 311 | if( tmp[0] < 33 || tmp[0] > 126 ) { | ~~~^~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:287:14: note: ‘tmp’ declared here 287 | char tmp[2]; | ^~~ [ 42%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/main.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/main.cpp.o -MF CMakeFiles/general-loader.dir/main.cpp.o.d -o CMakeFiles/general-loader.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/main.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c: In function ‘CGMappings25_Read’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:382:16: warning: ‘tmp’ may be used uninitialized [-Wmaybe-uninitialized] 382 | if( tmp[0] < 33 || tmp[0] > 126 ) { | ~~~^~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:358:14: note: ‘tmp’ declared here 358 | char tmp[2]; | ^~~ [ 42%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-reads.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-reads.c.o -MF CMakeFiles/cg-load.dir/factory-reads.c.o.d -o CMakeFiles/cg-load.dir/factory-reads.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-reads.c [ 42%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-progress.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-progress.c.o -MF CMakeFiles/pacbio-load.dir/pl-progress.c.o.d -o CMakeFiles/pacbio-load.dir/pl-progress.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-progress.c [ 42%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-tag-lfr.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-tag-lfr.c.o -MF CMakeFiles/cg-load.dir/factory-tag-lfr.c.o.d -o CMakeFiles/cg-load.dir/factory-tag-lfr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-tag-lfr.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c: In function ‘sqlite3VdbeExpandSql’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77729:10: warning: function may return address of local variable [-Wreturn-local-addr] 77729 | return sqlite3StrAccumFinish(&out); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here 77625 | char zBase[100]; /* Initial working space */ | ^~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77729:10: warning: function may return address of local variable [-Wreturn-local-addr] 77729 | return sqlite3StrAccumFinish(&out); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here 77625 | char zBase[100]; /* Initial working space */ | ^~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here [ 43%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pacbio-load.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/pacbio-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pacbio-load.c.o -MF CMakeFiles/pacbio-load.dir/pacbio-load.c.o.d -o CMakeFiles/pacbio-load.dir/pacbio-load.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pacbio-load.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pacbio-load.c: In function ‘pacbio_meta_entry’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pacbio-load.c:219:53: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 219 | rc = KLoaderMeta_Write( node, toolname, __DATE__, "PacBio HDF5", KAppVersion() ); | ^~~~~~~~ [ 43%] Linking CXX executable ../../../../test-bin/makeinputs cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/makeinputs.dir/link.txt --verbose=1 [ 43%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_3.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_3.c.o -MF CMakeFiles/cg-load.dir/f1_3.c.o.d -o CMakeFiles/cg-load.dir/f1_3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f1_3.c [ 43%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_5.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_5.c.o -MF CMakeFiles/cg-load.dir/f1_5.c.o.d -o CMakeFiles/cg-load.dir/f1_5.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f1_5.c make -f tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema 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The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build [ 43%] Linking CXX executable ../../../bin/pacbio-load make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-load.dir/link.txt --verbose=1 make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/DependInfo.cmake "--color=" idx-text-makeinputs [ 43%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o [ 43%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_7.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o -MF CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o.d -o CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_7.c.o -MF CMakeFiles/cg-load.dir/f1_7.c.o.d -o CMakeFiles/cg-load.dir/f1_7.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f1_7.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 43%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o -MF CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o.d -o CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/makeinputs.dir/link.d CMakeFiles/makeinputs.dir/makeinputs.cpp.o CMakeFiles/makeinputs.dir/testsource.cpp.o -o ../../../../test-bin/makeinputs ../../../../ilib/libgeneral-writer.a -lncbi-vdb make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 43%] Built target makeinputs make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/DependInfo.cmake "--color=" idx-text-checklookup [ 44%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_0.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_0.c.o -MF CMakeFiles/cg-load.dir/f2_0.c.o.d -o CMakeFiles/cg-load.dir/f2_0.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_0.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 44%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o -MF CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o.d -o CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/checklookup.cpp [ 44%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_2.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_2.c.o -MF CMakeFiles/cg-load.dir/f2_2.c.o.d -o CMakeFiles/cg-load.dir/f2_2.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_2.c [ 44%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_4.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_4.c.o -MF CMakeFiles/cg-load.dir/f2_4.c.o.d -o CMakeFiles/cg-load.dir/f2_4.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_4.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/pacbio-load.dir/link.d "CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o" "CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o" "CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o" "CMakeFiles/pacbio-load.dir/pl-context.c.o" "CMakeFiles/pacbio-load.dir/pl-tools.c.o" "CMakeFiles/pacbio-load.dir/pl-zmw.c.o" "CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o" "CMakeFiles/pacbio-load.dir/pl-sequence.c.o" "CMakeFiles/pacbio-load.dir/pl-consensus.c.o" "CMakeFiles/pacbio-load.dir/pl-passes.c.o" "CMakeFiles/pacbio-load.dir/pl-metrics.c.o" "CMakeFiles/pacbio-load.dir/pl-regions.c.o" "CMakeFiles/pacbio-load.dir/pl-progress.c.o" "CMakeFiles/pacbio-load.dir/pacbio-load.c.o" -o ../../../bin/pacbio-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f pacbio-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv pacbio-load pacbio-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-load.3.2.1 pacbio-load.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-load.3 pacbio-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 44%] Built target pacbio-load make -f tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build.make tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/vdb-lock /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-lock /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/DependInfo.cmake "--color=" vdb-lock [ 44%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_5.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_5.c.o -MF CMakeFiles/cg-load.dir/f2_5.c.o.d -o CMakeFiles/cg-load.dir/f2_5.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_5.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build.make tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 44%] Building C object tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/vdb-lock.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-lock && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-lock\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/vdb-lock.c.o -MF CMakeFiles/vdb-lock.dir/vdb-lock.c.o.d -o CMakeFiles/vdb-lock.dir/vdb-lock.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/vdb-lock/vdb-lock.c [ 44%] Linking CXX executable ../../../bin/vdb-lock cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-lock && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-lock.dir/link.txt --verbose=1 [ 44%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/file.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/file.c.o -MF CMakeFiles/cg-load.dir/file.c.o.d -o CMakeFiles/cg-load.dir/file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/file.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp: In function ‘void run(const char*, bool, const int32_t*, const int32_t*, const int8_t*, int)’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp:76:16: warning: ‘gw’ may be used uninitialized [-Wmaybe-uninitialized] 76 | delete gw; | ^~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp:45:20: note: ‘gw’ was declared here 45 | GeneralWriter *gw; | ^~ /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/vdb-lock.dir/link.d "CMakeFiles/vdb-lock.dir/vdb-lock.c.o" -o ../../../bin/vdb-lock /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-lock.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-lock vdb-lock.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-lock.3.2.1 vdb-lock.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-lock.3 vdb-lock make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' In file included from /usr/include/c++/15/ios:44, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/general-writer/general-writer.hpp:34, from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:30: In static member function ‘static constexpr std::size_t std::char_traits::length(const char_type*)’, inlined from ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const _CharT*, const _Alloc&) [with = std::allocator; _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:713:49, inlined from ‘void run(const char*, TestCaseType, const std::string*, int)’ at /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:77:40: /usr/include/c++/15/bits/char_traits.h:393:32: warning: ‘db_schema’ may be used uninitialized [-Wmaybe-uninitialized] 393 | return __builtin_strlen(__s); | ~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp: In function ‘void run(const char*, TestCaseType, const std::string*, int)’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:57:21: note: ‘db_schema’ was declared here 57 | const char* db_schema; | ^~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:101:16: warning: ‘gw’ may be used uninitialized [-Wmaybe-uninitialized] 101 | delete gw; | ^~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:54:20: note: ‘gw’ was declared here 54 | GeneralWriter *gw; | ^~ [ 44%] Built target vdb-lock make -f tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/build.make tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/vdb-unlock /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-unlock /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/DependInfo.cmake "--color=" vdb-unlock make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/build.make tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 44%] Building C object tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-unlock && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-unlock\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o -MF CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o.d -o CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/vdb-unlock/vdb-unlock.c [ 44%] Linking CXX executable ../../../../../test-bin/bio-end-makeinputs cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/bio-end-makeinputs.dir/link.txt --verbose=1 [ 44%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/file-version-factory.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/file-version-factory.c.o -MF CMakeFiles/cg-load.dir/file-version-factory.c.o.d -o CMakeFiles/cg-load.dir/file-version-factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/file-version-factory.c [ 44%] Linking CXX executable ../../../bin/vdb-unlock cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/vdb-unlock && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-unlock.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/bio-end-makeinputs.dir/link.d "CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o" -o ../../../../../test-bin/bio-end-makeinputs ../../../../../ilib/libgeneral-writer.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 44%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/formats.c.o [ 44%] Built target bio-end-makeinputs cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/formats.c.o -MF CMakeFiles/cg-load.dir/formats.c.o.d -o CMakeFiles/cg-load.dir/formats.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/formats.c make -f tools/external/prefetch/CMakeFiles/prefetch.dir/build.make tools/external/prefetch/CMakeFiles/prefetch.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch/CMakeFiles/prefetch.dir/DependInfo.cmake "--color=" prefetch make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/prefetch/CMakeFiles/prefetch.dir/build.make tools/external/prefetch/CMakeFiles/prefetch.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 44%] Linking CXX executable ../../../../../test-bin/idx-text-makeinputs cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/idx-text-makeinputs.dir/link.txt --verbose=1 [ 44%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/kfile-no-q.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/prefetch\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/kfile-no-q.c.o -MF CMakeFiles/prefetch.dir/kfile-no-q.c.o.d -o CMakeFiles/prefetch.dir/kfile-no-q.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/kfile-no-q.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/vdb-unlock.dir/link.d "CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o" -o ../../../bin/vdb-unlock /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto [ 44%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-algn.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-unlock.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-algn.c.o -MF CMakeFiles/cg-load.dir/writer-algn.c.o.d -o CMakeFiles/cg-load.dir/writer-algn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-algn.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-unlock vdb-unlock.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-unlock.3.2.1 vdb-unlock.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-unlock.3 vdb-unlock make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 44%] Built target vdb-unlock [ 44%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX 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Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfMain.c.o /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/idx-text-makeinputs.dir/link.d "CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o" -o ../../../../../test-bin/idx-text-makeinputs ../../../../../ilib/libgeneral-writer.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/prefetch\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfMain.c.o -MF CMakeFiles/prefetch.dir/PrfMain.c.o.d -o CMakeFiles/prefetch.dir/PrfMain.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/PrfMain.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 44%] Built target idx-text-makeinputs [ 45%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o -MF CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o.d -o CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-evidence-intervals.c make -f tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/DependInfo.cmake "--color=" tui_cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -MF CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o.d -o CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_cpp.cpp [ 45%] Linking CXX executable ../../../bin/general-loader cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/general-loader.dir/link.txt --verbose=1 make -f tools/external/vdb-config/tui/CMakeFiles/tui.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui/CMakeFiles/tui.dir/DependInfo.cmake "--color=" tui make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/vdb-config/tui/CMakeFiles/tui.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 45%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/dir_dlg.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/dir_dlg.c.o -MF CMakeFiles/tui.dir/dir_dlg.c.o.d -o CMakeFiles/tui.dir/dir_dlg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/dir_dlg.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/general-loader.dir/link.d "CMakeFiles/general-loader.dir/general-loader.cpp.o" "CMakeFiles/general-loader.dir/protocol-parser.cpp.o" "CMakeFiles/general-loader.dir/database-loader.cpp.o" "CMakeFiles/general-loader.dir/main.cpp.o" -o ../../../bin/general-loader ../../../ilib/libgeneral-writer.a ../../../ilib/libloader.a -lkapp ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f general-loader.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv general-loader general-loader.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s general-loader.3.2.1 general-loader.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s general-loader.3 general-loader make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 45%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-seq.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cg-load\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-seq.c.o -MF CMakeFiles/cg-load.dir/writer-seq.c.o.d -o CMakeFiles/cg-load.dir/writer-seq.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-seq.c [ 45%] Built target general-loader [ 45%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o -MF CMakeFiles/tui.dir/eventring.c.o.d -o CMakeFiles/tui.dir/eventring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/eventring.c make -f tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build.make tools/external/sra-dump/CMakeFiles/fastq-dump.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump/CMakeFiles/fastq-dump.dir/DependInfo.cmake "--color=" fastq-dump make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build.make tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 45%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o [ 45%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/file_dlg.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o -MF CMakeFiles/fastq-dump.dir/factory.c.o.d -o CMakeFiles/fastq-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/file_dlg.c.o -MF CMakeFiles/tui.dir/file_dlg.c.o.d -o CMakeFiles/tui.dir/file_dlg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/file_dlg.c [ 45%] Linking CXX executable ../../../bin/cg-load cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/cg-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/cg-load.dir/link.txt --verbose=1 [ 45%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/prefetch\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o -MF CMakeFiles/prefetch.dir/prefetch.c.o.d -o CMakeFiles/prefetch.dir/prefetch.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/prefetch.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/cg-load.dir/link.d "CMakeFiles/cg-load.dir/cg-load.c.o" "CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o" "CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o" "CMakeFiles/cg-load.dir/factory-mappings.c.o" "CMakeFiles/cg-load.dir/factory-reads.c.o" "CMakeFiles/cg-load.dir/factory-tag-lfr.c.o" "CMakeFiles/cg-load.dir/f1_3.c.o" "CMakeFiles/cg-load.dir/f1_5.c.o" "CMakeFiles/cg-load.dir/f1_7.c.o" "CMakeFiles/cg-load.dir/f2_0.c.o" "CMakeFiles/cg-load.dir/f2_2.c.o" "CMakeFiles/cg-load.dir/f2_4.c.o" "CMakeFiles/cg-load.dir/f2_5.c.o" "CMakeFiles/cg-load.dir/file.c.o" "CMakeFiles/cg-load.dir/file-version-factory.c.o" "CMakeFiles/cg-load.dir/formats.c.o" "CMakeFiles/cg-load.dir/writer-algn.c.o" "CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o" "CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o" "CMakeFiles/cg-load.dir/writer-seq.c.o" -o ../../../bin/cg-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto [ 45%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f cg-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o -MF CMakeFiles/tui.dir/line_policy.c.o.d -o CMakeFiles/tui.dir/line_policy.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/line_policy.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv cg-load cg-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s cg-load.3.2.1 cg-load.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s cg-load.3 cg-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target cg-load [ 45%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o -MF CMakeFiles/tui.dir/screen.c.o.d -o CMakeFiles/tui.dir/screen.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/screen.c [ 46%] Linking CXX executable ../../../../../test-bin/idx-text-checklookup cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/idx-text-checklookup.dir/link.txt --verbose=1 /usr/lib/aarch64-linux-gnu/libncbi-vdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make -f tools/external/sra-dump/CMakeFiles/sff-dump.dir/build.make tools/external/sra-dump/CMakeFiles/sff-dump.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump/CMakeFiles/sff-dump.dir/DependInfo.cmake "--color=" sff-dump /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/idx-text-checklookup.dir/link.d "CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o" -o ../../../../../test-bin/idx-text-checklookup /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto [ 46%] Linking CXX static library ../../../../ilib/libtui_cpp.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -P CMakeFiles/tui_cpp.dir/cmake_clean_target.cmake make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/sra-dump/CMakeFiles/sff-dump.dir/build.make tools/external/sra-dump/CMakeFiles/sff-dump.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 46%] Built target idx-text-checklookup cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -E cmake_link_script CMakeFiles/tui_cpp.dir/link.txt --verbose=1 [ 46%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o -MF CMakeFiles/sff-dump.dir/factory.c.o.d -o CMakeFiles/sff-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c [ 46%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o -MF CMakeFiles/fastq-dump.dir/fasta_dump.c.o.d -o CMakeFiles/fastq-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c /usr/bin/ar qc ../../../../ilib/libtui_cpp.a CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o /usr/bin/ranlib ../../../../ilib/libtui_cpp.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 47%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfRetrier.c.o -MF CMakeFiles/prefetch.dir/PrfRetrier.c.o.d -o CMakeFiles/prefetch.dir/PrfRetrier.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/PrfRetrier.c [ 47%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfOutFile.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/prefetch\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfOutFile.c.o -MF CMakeFiles/prefetch.dir/PrfOutFile.c.o.d -o CMakeFiles/prefetch.dir/PrfOutFile.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/PrfOutFile.c [ 48%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o -MF CMakeFiles/sff-dump.dir/fasta_dump.c.o.d -o CMakeFiles/sff-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c [ 48%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o -MF CMakeFiles/tui.dir/tui.c.o.d -o CMakeFiles/tui.dir/tui.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui.c [ 48%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o -MF CMakeFiles/fastq-dump.dir/core.c.o.d -o CMakeFiles/fastq-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c: In function ‘KMain’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 1011 | ReportBuildDate ( __DATE__ ); | ^~~~~~~~ [ 48%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o -MF CMakeFiles/tui.dir/tui_dlg.c.o.d -o CMakeFiles/tui.dir/tui_dlg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_dlg.c [ 48%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o -MF CMakeFiles/tui.dir/tui_dlg_helper.c.o.d -o CMakeFiles/tui.dir/tui_dlg_helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_dlg_helper.c [ 48%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o -MF CMakeFiles/sff-dump.dir/core.c.o.d -o CMakeFiles/sff-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c: In function ‘KMain’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 1011 | ReportBuildDate ( __DATE__ ); | ^~~~~~~~ make -f tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build.make tools/external/sra-dump/CMakeFiles/illumina-dump.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump/CMakeFiles/illumina-dump.dir/DependInfo.cmake "--color=" illumina-dump make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build.make tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 48%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX 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tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o -MF CMakeFiles/sff-dump.dir/sff.c.o.d -o CMakeFiles/sff-dump.dir/sff.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/sff.c make -f tools/external/sra-dump/CMakeFiles/abi-dump.dir/build.make tools/external/sra-dump/CMakeFiles/abi-dump.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump/CMakeFiles/abi-dump.dir/DependInfo.cmake "--color=" abi-dump make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/sra-dump/CMakeFiles/abi-dump.dir/build.make tools/external/sra-dump/CMakeFiles/abi-dump.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 48%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/factory.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto [ 50%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/fasta_dump.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sff-dump.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o -MF CMakeFiles/tui.dir/tui_menu.c.o.d -o CMakeFiles/tui.dir/tui_menu.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_menu.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 prefetch-driver make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 50%] Built target prefetch make -f tools/external/sra-pileup/CMakeFiles/sam-dump.dir/build.make tools/external/sra-pileup/CMakeFiles/sam-dump.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup/CMakeFiles/sam-dump.dir/DependInfo.cmake "--color=" 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/inputfiles.c.o -MF CMakeFiles/sam-dump.dir/inputfiles.c.o.d -o CMakeFiles/sam-dump.dir/inputfiles.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/inputfiles.c [ 51%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 1011 | ReportBuildDate ( __DATE__ ); | ^~~~~~~~ [ 51%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o -MF CMakeFiles/sam-dump.dir/perf_log.c.o.d -o CMakeFiles/sam-dump.dir/perf_log.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/perf_log.c [ 51%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_palette.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_palette.c.o -MF CMakeFiles/tui.dir/tui_palette.c.o.d -o CMakeFiles/tui.dir/tui_palette.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_palette.c [ 52%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o -MF CMakeFiles/sra-pileup.dir/out_redir.c.o.d -o CMakeFiles/sra-pileup.dir/out_redir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/out_redir.c [ 52%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o cd 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-Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_std_dlg.c.o -MF CMakeFiles/tui.dir/tui_std_dlg.c.o.d -o CMakeFiles/tui.dir/tui_std_dlg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_std_dlg.c [ 52%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o -MF CMakeFiles/sra-pileup.dir/perf_log.c.o.d -o CMakeFiles/sra-pileup.dir/perf_log.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/perf_log.c [ 52%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump-opts.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump-opts.c.o -MF CMakeFiles/sam-dump.dir/sam-dump-opts.c.o.d -o CMakeFiles/sam-dump.dir/sam-dump-opts.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump-opts.c [ 52%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/illumina.c.o cd 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CMakeFiles/illumina-dump.dir/illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/illumina.c [ 52%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o -MF CMakeFiles/sra-pileup.dir/reref.c.o.d -o CMakeFiles/sra-pileup.dir/reref.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/reref.c [ 52%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o -MF CMakeFiles/tui.dir/tui_widget.c.o.d -o CMakeFiles/tui.dir/tui_widget.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget.c [ 52%] Linking CXX executable ../../../bin/fastq-dump cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastq-dump.dir/link.txt --verbose=1 [ 52%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc 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-Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/fastq-dump.dir/link.d "CMakeFiles/fastq-dump.dir/factory.c.o" "CMakeFiles/fastq-dump.dir/fasta_dump.c.o" "CMakeFiles/fastq-dump.dir/core.c.o" "CMakeFiles/fastq-dump.dir/fastq.c.o" -o ../../../bin/fastq-dump /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f fastq-dump.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv fastq-dump fastq-dump.3.2.1 [ 52%] Linking CXX executable ../../../bin/illumina-dump [ 53%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastq-dump.3.2.1 fastq-dump.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/illumina-dump.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration 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cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv illumina-dump illumina-dump.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s illumina-dump.3.2.1 illumina-dump.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s illumina-dump.3 illumina-dump make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 53%] Built target illumina-dump [ 53%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/out_redir.c.o [ 53%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/out_redir.c.o -MF CMakeFiles/sam-dump.dir/out_redir.c.o.d -o CMakeFiles/sam-dump.dir/out_redir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/out_redir.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ 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make -f tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/build.make tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/DependInfo.cmake "--color=" fasterq-dump make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/build.make 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o -MF CMakeFiles/fasterq-dump.dir/helper.c.o.d -o CMakeFiles/fasterq-dump.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/helper.c [ 53%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_checkbox.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_regions.c.o -MF CMakeFiles/sra-pileup.dir/ref_regions.c.o.d -o CMakeFiles/sra-pileup.dir/ref_regions.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/ref_regions.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_checkbox.c.o -MF CMakeFiles/tui.dir/tui_widget_checkbox.c.o.d -o CMakeFiles/tui.dir/tui_widget_checkbox.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_checkbox.c [ 53%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr.c.o cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-hdr.c [ 54%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_grid.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/abi-dump.dir/link.d "CMakeFiles/abi-dump.dir/factory.c.o" "CMakeFiles/abi-dump.dir/fasta_dump.c.o" "CMakeFiles/abi-dump.dir/core.c.o" "CMakeFiles/abi-dump.dir/abi.c.o" -o ../../../bin/abi-dump /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto [ 54%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/4na_ascii.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f abi-dump.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE 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abi-dump abi-dump.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s abi-dump.3.2.1 abi-dump.3 [ 54%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o -MF CMakeFiles/tui.dir/tui_widget_label.c.o.d -o CMakeFiles/tui.dir/tui_widget_label.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_label.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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55%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_progress.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o -MF CMakeFiles/fasterq-dump.dir/tool_ctx.c.o.d -o CMakeFiles/fasterq-dump.dir/tool_ctx.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/tool_ctx.c [ 55%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/walk_debug.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/walk_debug.c.o -MF CMakeFiles/sra-pileup.dir/walk_debug.c.o.d -o CMakeFiles/sra-pileup.dir/walk_debug.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/walk_debug.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/tool_ctx.c: In function ‘tctx_extract_short_accession’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/tool_ctx.c:362:22: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 362 | ReportBuildDate( __DATE__ ); | ^~~~~~~~ [ 55%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -MF CMakeFiles/tui.dir/tui_widget_spin_edit.c.o.d -o CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_spin_edit.c make -f tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build.make tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/DependInfo.cmake "--color=" vdb-dump make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build.make tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 55%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX 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tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o -MF CMakeFiles/sra-pileup.dir/pileup_counters.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_counters.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_counters.c [ 56%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o -MF CMakeFiles/fasterq-dump.dir/inspector.c.o.d -o CMakeFiles/fasterq-dump.dir/inspector.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c [ 56%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix 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tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-aligned.c.o -MF CMakeFiles/sam-dump.dir/sam-aligned.c.o.d -o CMakeFiles/sam-dump.dir/sam-aligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-aligned.c [ 57%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_tabhdr.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"libs/tui\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_tabhdr.c.o -MF CMakeFiles/tui.dir/tui_widget_tabhdr.c.o.d -o CMakeFiles/tui.dir/tui_widget_tabhdr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_tabhdr.c [ 57%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_index.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_index.c.o -MF CMakeFiles/sra-pileup.dir/pileup_index.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_index.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_index.c [ 57%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/linux/systui.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DBMNEONOPT -DLINUX 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_varcount.c.o -MF CMakeFiles/sra-pileup.dir/pileup_varcount.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_varcount.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_varcount.c [ 57%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-coldefs.c [ 57%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-unaligned.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-unaligned.c.o -MF CMakeFiles/sam-dump.dir/sam-unaligned.c.o.d -o CMakeFiles/sam-dump.dir/sam-unaligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-unaligned.c [ 57%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_stat.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_stat.c.o -MF CMakeFiles/sra-pileup.dir/pileup_stat.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_stat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_stat.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c: In function ‘insp_report’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c:1155:14: warning: ‘res’ may be used uninitialized [-Wmaybe-uninitialized] 1155 | rc = KOutMsg( "... is %s\n", s_acc_type ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c:248:18: note: ‘res’ was declared here 248 | const char * res; | ^~~ [ 58%] Linking C static library ../../../../ilib/libtui.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -P CMakeFiles/tui.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -E cmake_link_script CMakeFiles/tui.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../ilib/libtui.a CMakeFiles/tui.dir/dir_dlg.c.o CMakeFiles/tui.dir/eventring.c.o CMakeFiles/tui.dir/file_dlg.c.o CMakeFiles/tui.dir/line_policy.c.o CMakeFiles/tui.dir/screen.c.o CMakeFiles/tui.dir/string_cache.c.o CMakeFiles/tui.dir/tui.c.o CMakeFiles/tui.dir/tui_dlg.c.o CMakeFiles/tui.dir/tui_dlg_helper.c.o CMakeFiles/tui.dir/tui_menu.c.o CMakeFiles/tui.dir/tui_palette.c.o CMakeFiles/tui.dir/tui_std_dlg.c.o CMakeFiles/tui.dir/tui_widget.c.o CMakeFiles/tui.dir/tui_widget_button.c.o CMakeFiles/tui.dir/tui_widget_checkbox.c.o CMakeFiles/tui.dir/tui_widget_grid.c.o CMakeFiles/tui.dir/tui_widget_inputline.c.o CMakeFiles/tui.dir/tui_widget_label.c.o CMakeFiles/tui.dir/tui_widget_progress.c.o CMakeFiles/tui.dir/tui_widget_radiobox.c.o CMakeFiles/tui.dir/tui_widget_spin_edit.c.o CMakeFiles/tui.dir/tui_widget_string_list.c.o CMakeFiles/tui.dir/tui_widget_tabhdr.c.o CMakeFiles/tui.dir/linux/systui.c.o /usr/bin/ranlib ../../../../ilib/libtui.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 58%] Built target tui make -f tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build.make tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/DependInfo.cmake "--color=" vdb-validate [ 58%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o -MF CMakeFiles/fasterq-dump.dir/sbuffer.c.o.d -o CMakeFiles/fasterq-dump.dir/sbuffer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/sbuffer.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build.make tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 58%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/main.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-validate\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/main.c.o -MF CMakeFiles/vdb-validate.dir/main.c.o.d -o CMakeFiles/vdb-validate.dir/main.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/main.c [ 58%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_v2.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_v2.c.o -MF CMakeFiles/sra-pileup.dir/pileup_v2.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_v2.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_v2.c [ 58%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o -MF CMakeFiles/fasterq-dump.dir/err_msg.c.o.d -o CMakeFiles/fasterq-dump.dir/err_msg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/err_msg.c [ 58%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/sra-pileup.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/sra-pileup.c.o -MF CMakeFiles/sra-pileup.dir/sra-pileup.c.o.d -o CMakeFiles/sra-pileup.dir/sra-pileup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sra-pileup.c [ 58%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-validate\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o -MF CMakeFiles/vdb-validate.dir/vdb-validate.c.o.d -o CMakeFiles/vdb-validate.dir/vdb-validate.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/vdb-validate.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sra-pileup.c: In function ‘KMain’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sra-pileup.c:1416:22: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 1416 | ReportBuildDate( __DATE__ ); | ^~~~~~~~ [ 58%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-tools.c make -f tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build.make tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/DependInfo.cmake "--color=" check-corrupt make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build.make tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 59%] Building CXX object tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-validate\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o -MF CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o.d -o CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/check-corrupt.cpp [ 59%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/var_fmt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/var_fmt.c.o -MF CMakeFiles/fasterq-dump.dir/var_fmt.c.o.d -o CMakeFiles/fasterq-dump.dir/var_fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/var_fmt.c [ 59%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o -MF CMakeFiles/sam-dump.dir/md_flag.c.o.d -o CMakeFiles/sam-dump.dir/md_flag.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/md_flag.c [ 59%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o -MF CMakeFiles/fasterq-dump.dir/flex_printer.c.o.d -o CMakeFiles/fasterq-dump.dir/flex_printer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/flex_printer.c [ 59%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o -MF CMakeFiles/sam-dump.dir/cg_tools.c.o.d -o CMakeFiles/sam-dump.dir/cg_tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/cg_tools.c [ 59%] Linking CXX executable ../../../bin/sra-pileup cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-pileup.dir/link.txt --verbose=1 [ 59%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o -MF CMakeFiles/fasterq-dump.dir/temp_dir.c.o.d -o CMakeFiles/fasterq-dump.dir/temp_dir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/temp_dir.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/sra-pileup.dir/link.d "CMakeFiles/sra-pileup.dir/dyn_string.c.o" "CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o" "CMakeFiles/sra-pileup.dir/out_redir.c.o" "CMakeFiles/sra-pileup.dir/perf_log.c.o" "CMakeFiles/sra-pileup.dir/reref.c.o" "CMakeFiles/sra-pileup.dir/cg_tools.c.o" "CMakeFiles/sra-pileup.dir/report_deletes.c.o" "CMakeFiles/sra-pileup.dir/ref_regions.c.o" "CMakeFiles/sra-pileup.dir/4na_ascii.c.o" "CMakeFiles/sra-pileup.dir/ref_walker_0.c.o" "CMakeFiles/sra-pileup.dir/ref_walker.c.o" "CMakeFiles/sra-pileup.dir/walk_debug.c.o" "CMakeFiles/sra-pileup.dir/pileup_counters.c.o" "CMakeFiles/sra-pileup.dir/pileup_index.c.o" "CMakeFiles/sra-pileup.dir/pileup_indels.c.o" "CMakeFiles/sra-pileup.dir/pileup_varcount.c.o" "CMakeFiles/sra-pileup.dir/pileup_stat.c.o" "CMakeFiles/sra-pileup.dir/pileup_v2.c.o" "CMakeFiles/sra-pileup.dir/sra-pileup.c.o" -o ../../../bin/sra-pileup /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-pileup.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-pileup sra-pileup.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-pileup.3.2.1 sra-pileup.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-pileup.3 sra-pileup cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 sra-pileup-driver make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 59%] Built target sra-pileup [ 59%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o -MF CMakeFiles/sam-dump.dir/sam-dump.c.o.d -o CMakeFiles/sam-dump.dir/sam-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump.c [ 59%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o -MF CMakeFiles/fasterq-dump.dir/progress_thread.c.o.d -o CMakeFiles/fasterq-dump.dir/progress_thread.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/progress_thread.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump.c: In function ‘SAM_Dump_Main’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump.c:4387:22: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 4387 | ReportBuildDate( __DATE__ ); | ^~~~~~~~ [ 60%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o -MF CMakeFiles/fasterq-dump.dir/cleanup_task.c.o.d -o CMakeFiles/fasterq-dump.dir/cleanup_task.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/cleanup_task.c [ 60%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-validate\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o -MF CMakeFiles/vdb-validate.dir/check-redact.c.o.d -o CMakeFiles/vdb-validate.dir/check-redact.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/check-redact.c [ 60%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o -MF CMakeFiles/fasterq-dump.dir/index.c.o.d -o CMakeFiles/fasterq-dump.dir/index.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/index.c make -f tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/DependInfo.cmake "--color=" vdb-decrypt make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 60%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-decrypt\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function 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tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_writer.c.o -MF CMakeFiles/fasterq-dump.dir/lookup_writer.c.o.d -o CMakeFiles/fasterq-dump.dir/lookup_writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/lookup_writer.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/vdb-validate.dir/link.d "CMakeFiles/vdb-validate.dir/main.c.o" "CMakeFiles/vdb-validate.dir/vdb-validate.c.o" "CMakeFiles/vdb-validate.dir/check-redact.c.o" -o ../../../bin/vdb-validate /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-validate.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-validate vdb-validate.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-validate.3.2.1 vdb-validate.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-validate.3 vdb-validate make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 61%] Built target vdb-validate /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/check-corrupt.dir/link.d "CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o" -o ../../../bin/check-corrupt /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f check-corrupt.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv check-corrupt check-corrupt.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s check-corrupt.3.2.1 check-corrupt.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s check-corrupt.3 check-corrupt [ 61%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT 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check-corrupt [ 61%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-helper.c [ 61%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_reader.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_reader.c.o -MF CMakeFiles/fasterq-dump.dir/lookup_reader.c.o.d -o CMakeFiles/fasterq-dump.dir/lookup_reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/lookup_reader.c [ 61%] Linking CXX executable ../../../bin/vdb-decrypt cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-decrypt.dir/link.txt --verbose=1 make -f tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/DependInfo.cmake "--color=" vdb-encrypt make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 61%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o cd 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CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt/vdb-encrypt.c [ 61%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_file_list.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char 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-lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-decrypt.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-decrypt vdb-decrypt.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-decrypt.3.2.1 vdb-decrypt.3 [ 61%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/shared.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-decrypt.3 vdb-decrypt cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-decrypt\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/shared.c.o -MF CMakeFiles/vdb-encrypt.dir/shared.c.o.d -o CMakeFiles/vdb-encrypt.dir/shared.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt/shared.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 61%] Built target vdb-decrypt [ 61%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && 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Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_value.c.o [ 61%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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-Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o -MF CMakeFiles/sam-dump.dir/dyn_string.c.o.d -o CMakeFiles/sam-dump.dir/dyn_string.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/dyn_string.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump3.c: In function ‘KMain’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump3.c:557:38: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 557 | ReportBuildDate( __DATE__ ); | ^~~~~~~~ [ 61%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_printer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_printer.c.o -MF CMakeFiles/fasterq-dump.dir/file_printer.c.o.d -o CMakeFiles/fasterq-dump.dir/file_printer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/file_printer.c make -f tools/external/srapath/CMakeFiles/srapath.dir/build.make tools/external/srapath/CMakeFiles/srapath.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath/CMakeFiles/srapath.dir/DependInfo.cmake "--color=" srapath make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/srapath/CMakeFiles/srapath.dir/build.make tools/external/srapath/CMakeFiles/srapath.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 61%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/merge_sorter.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/merge_sorter.c.o -MF CMakeFiles/fasterq-dump.dir/merge_sorter.c.o.d -o CMakeFiles/fasterq-dump.dir/merge_sorter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/merge_sorter.c [ 61%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/line_iter.c.o [ 61%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/helper.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/srapath\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/helper.c.o -MF CMakeFiles/srapath.dir/helper.c.o.d -o CMakeFiles/srapath.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/helper.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/srapath\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/line_iter.c.o -MF CMakeFiles/srapath.dir/line_iter.c.o.d -o CMakeFiles/srapath.dir/line_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/line_iter.c [ 61%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-formats.c [ 61%] Linking CXX executable ../../../bin/vdb-encrypt cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-encrypt.dir/link.txt --verbose=1 [ 61%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sorter.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sorter.c.o -MF CMakeFiles/fasterq-dump.dir/sorter.c.o.d -o CMakeFiles/fasterq-dump.dir/sorter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/sorter.c [ 61%] Linking CXX executable ../../../bin/sam-dump /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/vdb-encrypt.dir/link.d "CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o" "CMakeFiles/vdb-encrypt.dir/shared.c.o" -o ../../../bin/vdb-encrypt /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-dump.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-encrypt.3.2.1 [ 61%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-encrypt vdb-encrypt.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-redir.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-encrypt.3.2.1 vdb-encrypt.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-encrypt.3 vdb-encrypt make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 61%] Built target vdb-encrypt make -f tools/external/sra-stat/CMakeFiles/sra-stat.dir/build.make tools/external/sra-stat/CMakeFiles/sra-stat.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-stat/CMakeFiles/sra-stat.dir/DependInfo.cmake "--color=" sra-stat [ 61%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/repository-mgr.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/srapath\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/repository-mgr.c.o -MF CMakeFiles/srapath.dir/repository-mgr.c.o.d -o CMakeFiles/srapath.dir/repository-mgr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/repository-mgr.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/sra-stat/CMakeFiles/sra-stat.dir/build.make tools/external/sra-stat/CMakeFiles/sra-stat.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 62%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -MF CMakeFiles/fasterq-dump.dir/cmn_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/cmn_iter.c [ 62%] Building C object tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-stat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-stat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o -MF CMakeFiles/sra-stat.dir/assembly-statistics.c.o.d -o CMakeFiles/sra-stat.dir/assembly-statistics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat/assembly-statistics.c [ 62%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-fastq.c [ 62%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/services.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/srapath\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/services.c.o -MF CMakeFiles/srapath.dir/services.c.o.d -o CMakeFiles/srapath.dir/services.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/services.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/sam-dump.dir/link.d "CMakeFiles/sam-dump.dir/inputfiles.c.o" "CMakeFiles/sam-dump.dir/perf_log.c.o" "CMakeFiles/sam-dump.dir/rna_splice_log.c.o" "CMakeFiles/sam-dump.dir/sam-dump-opts.c.o" "CMakeFiles/sam-dump.dir/out_redir.c.o" "CMakeFiles/sam-dump.dir/sam-hdr.c.o" "CMakeFiles/sam-dump.dir/sam-hdr1.c.o" "CMakeFiles/sam-dump.dir/matecache.c.o" "CMakeFiles/sam-dump.dir/read_fkt.c.o" "CMakeFiles/sam-dump.dir/sam-aligned.c.o" "CMakeFiles/sam-dump.dir/sam-unaligned.c.o" "CMakeFiles/sam-dump.dir/md_flag.c.o" "CMakeFiles/sam-dump.dir/cg_tools.c.o" "CMakeFiles/sam-dump.dir/sam-dump.c.o" "CMakeFiles/sam-dump.dir/sam-dump3.c.o" "CMakeFiles/sam-dump.dir/dyn_string.c.o" -o ../../../bin/sam-dump /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sam-dump.3.2.1 [ 62%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sam-dump sam-dump.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sam-dump.3.2.1 sam-dump.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-view-spec.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sam-dump.3 sam-dump cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 sam-dump-driver make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 62%] Built target sam-dump [ 62%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/cgi_request.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/srapath\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb_info.c.o -MF CMakeFiles/vdb-dump.dir/vdb_info.c.o.d -o CMakeFiles/vdb-dump.dir/vdb_info.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb_info.c [ 62%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat/sra-stat.c: In function ‘print_results’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat/sra-stat.c:3263:22: warning: unused variable ‘rc_fmt’ [-Wunused-variable] 3263 | rc_t rc_fmt = formatLoadTime(ctx->info->loadTimestamp, buf, sizeof(buf), &sz); | ^~~~~~ make -f tools/external/align-info/CMakeFiles/align-info.dir/build.make tools/external/align-info/CMakeFiles/align-info.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/align-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/align-info 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/align_iter.c.o -MF CMakeFiles/fasterq-dump.dir/align_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/align_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/align_iter.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s rcexplain.3 rcexplain make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 62%] Building C object tools/external/align-info/CMakeFiles/align-info.dir/align-info.c.o cd 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CMakeFiles/align-info.dir/align-info.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/align-info/align-info.c [ 62%] Built target rcexplain [ 62%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump.c [ 62%] Linking CXX executable ../../../bin/srapath cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/srapath && /usr/bin/cmake -E cmake_link_script CMakeFiles/srapath.dir/link.txt --verbose=1 [ 62%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o -MF CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/simple_fasta_iter.c [ 62%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o -MF CMakeFiles/fasterq-dump.dir/db_join.c.o.d -o CMakeFiles/fasterq-dump.dir/db_join.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/db_join.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/srapath.dir/link.d CMakeFiles/srapath.dir/helper.c.o CMakeFiles/srapath.dir/line_iter.c.o "CMakeFiles/srapath.dir/repository-mgr.c.o" CMakeFiles/srapath.dir/services.c.o CMakeFiles/srapath.dir/cgi_request.c.o CMakeFiles/srapath.dir/srapath.c.o -o ../../../bin/srapath /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f srapath.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv srapath srapath.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s srapath.3.2.1 srapath.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s srapath.3 srapath cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 srapath-driver make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 62%] Built target srapath make -f tools/external/test-sra/CMakeFiles/test-sra.dir/build.make tools/external/test-sra/CMakeFiles/test-sra.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/test-sra /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/test-sra /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/test-sra/CMakeFiles/test-sra.dir/DependInfo.cmake "--color=" test-sra make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/test-sra/CMakeFiles/test-sra.dir/build.make tools/external/test-sra/CMakeFiles/test-sra.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 62%] Building C object tools/external/test-sra/CMakeFiles/test-sra.dir/test-sra.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/test-sra && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/test-sra\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/test-sra/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/test-sra/CMakeFiles/test-sra.dir/test-sra.c.o -MF CMakeFiles/test-sra.dir/test-sra.c.o.d -o CMakeFiles/test-sra.dir/test-sra.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/test-sra/test-sra.c [ 62%] Linking CXX executable ../../../bin/align-info cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/align-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-info.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/align-info.dir/link.d "CMakeFiles/align-info.dir/align-info.c.o" -o ../../../bin/align-info /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f align-info.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv align-info align-info.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s align-info.3.2.1 align-info.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s align-info.3 align-info make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 62%] Built target align-info make -f tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/build.make tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/cache-mgr /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/DependInfo.cmake "--color=" cache-mgr [ 62%] Building C object tools/external/test-sra/CMakeFiles/test-sra.dir/unix/PrintOS.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/build.make tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/test-sra && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/test-sra\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/test-sra/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/test-sra/CMakeFiles/test-sra.dir/unix/PrintOS.c.o -MF CMakeFiles/test-sra.dir/unix/PrintOS.c.o.d -o CMakeFiles/test-sra.dir/unix/PrintOS.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/test-sra/unix/PrintOS.c [ 62%] Building C object tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/cache-mgr.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/cache-mgr && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/cache-mgr\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/cache-mgr.c.o -MF CMakeFiles/cache-mgr.dir/cache-mgr.c.o.d -o CMakeFiles/cache-mgr.dir/cache-mgr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c make -f tools/external/driver-tool/CMakeFiles/sratools.dir/build.make tools/external/driver-tool/CMakeFiles/sratools.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool/CMakeFiles/sratools.dir/DependInfo.cmake "--color=" sratools /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c: In function ‘perform_report’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c:702:16: warning: storing the address of local variable ‘data’ in ‘*octx.data’ [-Wdangling-pointer=] 702 | octx->data = &data; | ~~~~~~~~~~~^~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c:699:17: note: ‘data’ declared here 699 | report_data data; | ^~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c:696:41: note: ‘octx’ declared here 696 | static rc_t perform_report( visit_ctx * octx ) | ~~~~~~~~~~~~^~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c: In function ‘perform_unlock’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c:905:16: warning: storing the address of local variable ‘data’ in ‘*octx.data’ [-Wdangling-pointer=] 905 | octx->data = &data; | ~~~~~~~~~~~^~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c:902:17: note: ‘data’ declared here 902 | unlock_data data; | ^~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c:899:41: note: ‘octx’ declared here 899 | static rc_t perform_unlock( visit_ctx * octx ) | ~~~~~~~~~~~~^~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c: In function ‘perform_clear’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c:990:16: warning: storing the address of local variable ‘data’ in ‘*octx.data’ [-Wdangling-pointer=] 990 | octx->data = &data; | ~~~~~~~~~~~^~~~~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c:987:16: note: ‘data’ declared here 987 | clear_data data; | ^~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c:984:40: note: ‘octx’ declared here 984 | static rc_t perform_clear( visit_ctx * octx ) | ~~~~~~~~~~~~^~~~ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/driver-tool/CMakeFiles/sratools.dir/build.make tools/external/driver-tool/CMakeFiles/sratools.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 62%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/sratools.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/sratools.cpp.o -MF CMakeFiles/sratools.dir/sratools.cpp.o.d -o CMakeFiles/sratools.dir/sratools.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/sratools.cpp [ 63%] Linking CXX executable ../../../bin/vdb-dump cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-dump.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/vdb-dump.dir/link.d "CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o" "CMakeFiles/vdb-dump.dir/vdb_info.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump.c.o" -o ../../../bin/vdb-dump /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-dump.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-dump vdb-dump.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-dump.3.2.1 vdb-dump.3 [ 63%] Linking CXX executable ../../../bin/cache-mgr cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-dump.3 vdb-dump cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/cache-mgr && /usr/bin/cmake -E cmake_link_script CMakeFiles/cache-mgr.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 vdb-dump-driver [ 63%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o -MF CMakeFiles/fasterq-dump.dir/tbl_join.c.o.d -o CMakeFiles/fasterq-dump.dir/tbl_join.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/tbl_join.c [ 63%] Built target vdb-dump [ 64%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o -MF CMakeFiles/sratools.dir/config.cpp.o.d -o CMakeFiles/sratools.dir/config.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/config.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/cache-mgr.dir/link.d "CMakeFiles/cache-mgr.dir/cache-mgr.c.o" -o ../../../bin/cache-mgr /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f cache-mgr.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv cache-mgr cache-mgr.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s cache-mgr.3.2.1 cache-mgr.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s cache-mgr.3 cache-mgr make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target cache-mgr [ 64%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o -MF CMakeFiles/sratools.dir/command-line.cpp.o.d -o CMakeFiles/sratools.dir/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/command-line.cpp [ 64%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_registry.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_registry.c.o -MF CMakeFiles/fasterq-dump.dir/temp_registry.c.o.d -o CMakeFiles/fasterq-dump.dir/temp_registry.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/temp_registry.c [ 65%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o -MF CMakeFiles/fasterq-dump.dir/copy_machine.c.o.d -o CMakeFiles/fasterq-dump.dir/copy_machine.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/copy_machine.c make -f tools/external/sra-info/CMakeFiles/sra-info.dir/build.make tools/external/sra-info/CMakeFiles/sra-info.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-info/CMakeFiles/sra-info.dir/DependInfo.cmake "--color=" sra-info make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/sra-info/CMakeFiles/sra-info.dir/build.make tools/external/sra-info/CMakeFiles/sra-info.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 65%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-info\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o -MF CMakeFiles/sra-info.dir/main.cpp.o.d -o CMakeFiles/sra-info.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info/main.cpp [ 65%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o -MF CMakeFiles/fasterq-dump.dir/multi_writer.c.o.d -o CMakeFiles/fasterq-dump.dir/multi_writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/multi_writer.c [ 65%] Linking CXX executable ../../../bin/test-sra cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/test-sra && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-sra.dir/link.txt --verbose=1 [ 65%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o -MF CMakeFiles/fasterq-dump.dir/concatenator.c.o.d -o CMakeFiles/fasterq-dump.dir/concatenator.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/concatenator.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-sra.dir/link.d "CMakeFiles/test-sra.dir/test-sra.c.o" "CMakeFiles/test-sra.dir/unix/PrintOS.c.o" -o ../../../bin/test-sra ../../../ilib/libascp.a ../../../ilib/libdiagnose.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f test-sra.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv test-sra test-sra.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s test-sra.3.2.1 test-sra.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s test-sra.3 test-sra make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 65%] Built target test-sra [ 65%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o [ 65%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -MF CMakeFiles/fasterq-dump.dir/ref_inventory.c.o.d -o CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/ref_inventory.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-info\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o -MF CMakeFiles/sra-info.dir/sra-info.cpp.o.d -o CMakeFiles/sra-info.dir/sra-info.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info/sra-info.cpp [ 65%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o -MF CMakeFiles/sratools.dir/run-source.cpp.o.d -o CMakeFiles/sratools.dir/run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp [ 66%] Linking CXX executable ../../../bin/sra-stat cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-stat && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-stat.dir/link.txt --verbose=1 [ 66%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fasterq-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -MF CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o.d -o CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/fasterq-dump.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/sra-stat.dir/link.d "CMakeFiles/sra-stat.dir/assembly-statistics.c.o" "CMakeFiles/sra-stat.dir/sra.c.o" "CMakeFiles/sra-stat.dir/sra-stat.c.o" -o ../../../bin/sra-stat ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-stat.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-stat sra-stat.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-stat.3.2.1 sra-stat.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-stat.3 sra-stat make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 66%] Built target sra-stat [ 66%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o -MF CMakeFiles/sratools.dir/proc.cpp.o.d -o CMakeFiles/sratools.dir/proc.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp [ 66%] Linking CXX executable ../../../bin/fasterq-dump cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/fasterq-dump.dir/link.txt --verbose=1 make -f tools/internal/align-cache/CMakeFiles/align-cache.dir/build.make tools/internal/align-cache/CMakeFiles/align-cache.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/align-cache /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/align-cache /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/align-cache/CMakeFiles/align-cache.dir/DependInfo.cmake "--color=" align-cache make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/align-cache/CMakeFiles/align-cache.dir/build.make tools/internal/align-cache/CMakeFiles/align-cache.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 66%] Building CXX object tools/internal/align-cache/CMakeFiles/align-cache.dir/align-cache.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/align-cache && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/align-cache\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/align-cache/CMakeFiles/align-cache.dir/align-cache.cpp.o -MF CMakeFiles/align-cache.dir/align-cache.cpp.o.d -o CMakeFiles/align-cache.dir/align-cache.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/align-cache/align-cache.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/fasterq-dump.dir/link.d "CMakeFiles/fasterq-dump.dir/helper.c.o" "CMakeFiles/fasterq-dump.dir/arg_helper.c.o" "CMakeFiles/fasterq-dump.dir/dflt_defline.c.o" "CMakeFiles/fasterq-dump.dir/tool_ctx.c.o" "CMakeFiles/fasterq-dump.dir/inspector.c.o" "CMakeFiles/fasterq-dump.dir/sbuffer.c.o" "CMakeFiles/fasterq-dump.dir/err_msg.c.o" "CMakeFiles/fasterq-dump.dir/file_tools.c.o" "CMakeFiles/fasterq-dump.dir/var_fmt.c.o" "CMakeFiles/fasterq-dump.dir/flex_printer.c.o" "CMakeFiles/fasterq-dump.dir/temp_dir.c.o" "CMakeFiles/fasterq-dump.dir/progress_thread.c.o" "CMakeFiles/fasterq-dump.dir/cleanup_task.c.o" "CMakeFiles/fasterq-dump.dir/index.c.o" "CMakeFiles/fasterq-dump.dir/lookup_writer.c.o" "CMakeFiles/fasterq-dump.dir/lookup_reader.c.o" "CMakeFiles/fasterq-dump.dir/locked_file_list.c.o" "CMakeFiles/fasterq-dump.dir/locked_value.c.o" "CMakeFiles/fasterq-dump.dir/file_printer.c.o" "CMakeFiles/fasterq-dump.dir/merge_sorter.c.o" "CMakeFiles/fasterq-dump.dir/sorter.c.o" "CMakeFiles/fasterq-dump.dir/cmn_iter.c.o" "CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o" "CMakeFiles/fasterq-dump.dir/special_iter.c.o" "CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o" "CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o" "CMakeFiles/fasterq-dump.dir/align_iter.c.o" "CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o" "CMakeFiles/fasterq-dump.dir/db_join.c.o" "CMakeFiles/fasterq-dump.dir/tbl_join.c.o" "CMakeFiles/fasterq-dump.dir/temp_registry.c.o" "CMakeFiles/fasterq-dump.dir/copy_machine.c.o" "CMakeFiles/fasterq-dump.dir/multi_writer.c.o" "CMakeFiles/fasterq-dump.dir/concatenator.c.o" "CMakeFiles/fasterq-dump.dir/ref_inventory.c.o" "CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o" -o ../../../bin/fasterq-dump /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f fasterq-dump.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv fasterq-dump fasterq-dump.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fasterq-dump.3.2.1 fasterq-dump.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fasterq-dump.3 fasterq-dump cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 fasterq-dump-driver make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 66%] Built target fasterq-dump [ 66%] Building CXX object tools/internal/align-cache/CMakeFiles/align-cache.dir/helper.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/align-cache && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/align-cache\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/align-cache/CMakeFiles/align-cache.dir/helper.cpp.o -MF CMakeFiles/align-cache.dir/helper.cpp.o.d -o CMakeFiles/align-cache.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/align-cache/helper.cpp [ 66%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-info\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o -MF CMakeFiles/sra-info.dir/formatter.cpp.o.d -o CMakeFiles/sra-info.dir/formatter.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info/formatter.cpp [ 66%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o -MF CMakeFiles/sratools.dir/uuid.cpp.o.d -o CMakeFiles/sratools.dir/uuid.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/uuid.cpp [ 66%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o -MF CMakeFiles/sratools.dir/accession.cpp.o.d -o CMakeFiles/sratools.dir/accession.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.cpp [ 66%] Linking CXX executable ../../../bin/align-cache cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/align-cache && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-cache.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/align-cache.dir/link.d "CMakeFiles/align-cache.dir/align-cache.cpp.o" "CMakeFiles/align-cache.dir/helper.cpp.o" -o ../../../bin/align-cache /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f align-cache.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv align-cache align-cache.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s align-cache.3.2.1 align-cache.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s align-cache.3 align-cache make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 66%] Built target align-cache [ 66%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o -MF CMakeFiles/sratools.dir/service.cpp.o.d -o CMakeFiles/sratools.dir/service.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/service.cpp make -f tools/internal/ccextract/CMakeFiles/ccextract.dir/build.make tools/internal/ccextract/CMakeFiles/ccextract.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/ccextract /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/ccextract /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/ccextract/CMakeFiles/ccextract.dir/DependInfo.cmake "--color=" ccextract make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/ccextract/CMakeFiles/ccextract.dir/build.make tools/internal/ccextract/CMakeFiles/ccextract.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 66%] Building C object tools/internal/ccextract/CMakeFiles/ccextract.dir/ccextract.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/ccextract && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/ccextract\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/ccextract/CMakeFiles/ccextract.dir/ccextract.c.o -MF CMakeFiles/ccextract.dir/ccextract.c.o.d -o CMakeFiles/ccextract.dir/ccextract.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/ccextract/ccextract.c [ 67%] Linking CXX executable ../../../bin/ccextract cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/ccextract && /usr/bin/cmake -E cmake_link_script CMakeFiles/ccextract.dir/link.txt --verbose=1 [ 67%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o -MF CMakeFiles/sratools.dir/json-parse.cpp.o.d -o CMakeFiles/sratools.dir/json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/json-parse.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/ccextract.dir/link.d CMakeFiles/ccextract.dir/ccextract.c.o -o ../../../bin/ccextract /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libkxml.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libxml2.so cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f ccextract.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv ccextract ccextract.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ccextract.3.2.1 ccextract.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ccextract.3 ccextract make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 67%] Built target ccextract make -f tools/internal/check-redact/CMakeFiles/check-redact.dir/build.make tools/internal/check-redact/CMakeFiles/check-redact.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/check-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/check-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/check-redact/CMakeFiles/check-redact.dir/DependInfo.cmake "--color=" check-redact make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/check-redact/CMakeFiles/check-redact.dir/build.make tools/internal/check-redact/CMakeFiles/check-redact.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 67%] Building C object tools/internal/check-redact/CMakeFiles/check-redact.dir/check-redact.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/check-redact && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/check-redact\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/check-redact/CMakeFiles/check-redact.dir/check-redact.c.o -MF CMakeFiles/check-redact.dir/check-redact.c.o.d -o CMakeFiles/check-redact.dir/check-redact.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/check-redact/check-redact.c [ 67%] Linking CXX executable ../../../bin/check-redact cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/check-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/check-redact.dir/link.txt --verbose=1 make -f tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/DependInfo.cmake "--color=" compute-coverage make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 67%] Building CXX object tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o -MF CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o.d -o CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/compute-coverage/compute-coverage.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/check-redact.dir/link.d "CMakeFiles/check-redact.dir/check-redact.c.o" -o ../../../bin/check-redact /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f check-redact.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv check-redact check-redact.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s check-redact.3.2.1 check-redact.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s check-redact.3 check-redact make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 67%] Built target check-redact make -f tools/internal/copycat/CMakeFiles/copycat.dir/build.make tools/internal/copycat/CMakeFiles/copycat.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat/CMakeFiles/copycat.dir/DependInfo.cmake "--color=" copycat make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/copycat/CMakeFiles/copycat.dir/build.make tools/internal/copycat/CMakeFiles/copycat.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 67%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/copycat.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/DependInfo.cmake "--color=" make-read-filter make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/build.make tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 68%] Building C object tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/make-read-filter.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/make-read-filter && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-unused-result -MD -MT tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/make-read-filter.c.o -MF CMakeFiles/make-read-filter.dir/make-read-filter.c.o.d -o CMakeFiles/make-read-filter.dir/make-read-filter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/make-read-filter/make-read-filter.c [ 68%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccfileformat.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cccat.c.o -MF CMakeFiles/copycat.dir/cccat.c.o.d -o CMakeFiles/copycat.dir/cccat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cccat.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/compute-coverage.dir/link.d "CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o" -o ../../../bin/compute-coverage ../../../ilib/libtk-version.a -lkapp /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f compute-coverage.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv compute-coverage compute-coverage.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s compute-coverage.3.2.1 compute-coverage.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s compute-coverage.3 compute-coverage make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 68%] Built target compute-coverage [ 68%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctree.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cctree.c.o -MF CMakeFiles/copycat.dir/cctree.c.o.d -o CMakeFiles/copycat.dir/cctree.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree.c make -f tools/internal/md5cp/CMakeFiles/md5cp.dir/build.make tools/internal/md5cp/CMakeFiles/md5cp.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/md5cp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/md5cp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/md5cp/CMakeFiles/md5cp.dir/DependInfo.cmake "--color=" md5cp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/md5cp/CMakeFiles/md5cp.dir/build.make tools/internal/md5cp/CMakeFiles/md5cp.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 68%] Building C object tools/internal/md5cp/CMakeFiles/md5cp.dir/md5cp.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/md5cp && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/md5cp/CMakeFiles/md5cp.dir/md5cp.c.o -MF CMakeFiles/md5cp.dir/md5cp.c.o.d -o CMakeFiles/md5cp.dir/md5cp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/md5cp/md5cp.c [ 68%] Linking CXX executable ../../../bin/make-read-filter cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/make-read-filter && /usr/bin/cmake -E cmake_link_script CMakeFiles/make-read-filter.dir/link.txt --verbose=1 [ 68%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o -MF CMakeFiles/sratools.dir/SDL-response.cpp.o.d -o CMakeFiles/sratools.dir/SDL-response.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/SDL-response.cpp [ 68%] Linking CXX executable ../../../bin/md5cp cd 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mv make-read-filter make-read-filter.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s make-read-filter.3.2.1 make-read-filter.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s make-read-filter.3 make-read-filter make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 68%] Built target make-read-filter make -f tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/build.make tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-cmp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-cmp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/DependInfo.cmake "--color=" meta-cmp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/build.make tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/md5cp.dir/link.d CMakeFiles/md5cp.dir/md5cp.c.o -o ../../../bin/md5cp /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f md5cp.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv md5cp md5cp.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s md5cp.3.2.1 md5cp.3 [ 68%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctree-dump.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cctree-dump.c.o -MF CMakeFiles/copycat.dir/cctree-dump.c.o.d -o CMakeFiles/copycat.dir/cctree-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree-dump.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s md5cp.3 md5cp [ 68%] Building C object tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/meta-cmp.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-cmp && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/meta-cmp\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/meta-cmp.c.o -MF CMakeFiles/meta-cmp.dir/meta-cmp.c.o.d -o CMakeFiles/meta-cmp.dir/meta-cmp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-cmp/meta-cmp.c [ 68%] Built target md5cp [ 68%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctar.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cctar.c.o -MF CMakeFiles/copycat.dir/cctar.c.o.d -o CMakeFiles/copycat.dir/cctar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctar.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree-dump.c:39:9: warning: ‘__USE_POSIX’ redefined 39 | #define __USE_POSIX | ^~~~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/aarch64-linux-gnu/15/include/stdint.h:11, from /usr/include/ncbi-vdb/kfc/defs.h:34, from /usr/include/ncbi-vdb/klib/defs.h:31, from /usr/include/ncbi-vdb/klib/container.h:35, from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree-priv.h:31, from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree-dump.c:27: /usr/include/features.h:348:10: note: this is the location of the previous definition 348 | # define __USE_POSIX 1 | ^~~~~~~~~~~ [ 68%] Linking CXX executable ../../../bin/meta-cmp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-cmp && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-cmp.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/meta-cmp.dir/link.d "CMakeFiles/meta-cmp.dir/meta-cmp.c.o" -o ../../../bin/meta-cmp /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f meta-cmp.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv meta-cmp meta-cmp.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-cmp.3.2.1 meta-cmp.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-cmp.3 meta-cmp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 68%] Built target meta-cmp [ 68%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccsra.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb 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Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-copy/CMakeFiles/meta-copy.dir/DependInfo.cmake "--color=" meta-copy [ 68%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o -MF CMakeFiles/sratools.dir/tool-args.cpp.o.d -o CMakeFiles/sratools.dir/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/tool-args.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/meta-copy/CMakeFiles/meta-copy.dir/build.make tools/internal/meta-copy/CMakeFiles/meta-copy.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 68%] Building C object tools/internal/meta-copy/CMakeFiles/meta-copy.dir/meta-copy.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/meta-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/meta-copy/CMakeFiles/meta-copy.dir/meta-copy.c.o -MF CMakeFiles/meta-copy.dir/meta-copy.c.o.d -o CMakeFiles/meta-copy.dir/meta-copy.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-copy/meta-copy.c [ 69%] Linking CXX executable ../../../bin/meta-copy cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-copy && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-copy.dir/link.txt --verbose=1 [ 69%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccsubchunk.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccsubchunk.c.o -MF CMakeFiles/copycat.dir/ccsubchunk.c.o.d -o CMakeFiles/copycat.dir/ccsubchunk.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccsubchunk.c [ 70%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccfile.c.o /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/meta-copy.dir/link.d "CMakeFiles/meta-copy.dir/meta-copy.c.o" -o ../../../bin/meta-copy /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f meta-copy.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccfile.c.o -MF CMakeFiles/copycat.dir/ccfile.c.o.d -o CMakeFiles/copycat.dir/ccfile.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfile.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv meta-copy meta-copy.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-copy.3.2.1 meta-copy.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-copy.3 meta-copy make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 70%] Built target meta-copy make -f tools/internal/meta-repair/CMakeFiles/meta-repair.dir/build.make tools/internal/meta-repair/CMakeFiles/meta-repair.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-repair /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-repair /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-repair/CMakeFiles/meta-repair.dir/DependInfo.cmake "--color=" meta-repair make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/meta-repair/CMakeFiles/meta-repair.dir/build.make tools/internal/meta-repair/CMakeFiles/meta-repair.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 70%] Building C object tools/internal/meta-repair/CMakeFiles/meta-repair.dir/meta-repair.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-repair && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/meta-repair\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/meta-repair/CMakeFiles/meta-repair.dir/meta-repair.c.o -MF CMakeFiles/meta-repair.dir/meta-repair.c.o.d -o CMakeFiles/meta-repair.dir/meta-repair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-repair/meta-repair.c [ 70%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/fileformat.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ 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Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffext.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffext.c.o -MF CMakeFiles/copycat.dir/kff/ffext.c.o.d -o CMakeFiles/copycat.dir/kff/ffext.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffext.c make -f tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/DependInfo.cmake "--color=" test-read-write-cursor make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 70%] Building C object tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/rd-filter-redact\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o -MF CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o.d -o CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact/test-read-write-cursor.c [ 70%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffkey.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffkey.c.o -MF CMakeFiles/copycat.dir/kff/ffkey.c.o.d -o CMakeFiles/copycat.dir/kff/ffkey.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffkey.c [ 70%] Linking CXX executable ../../../bin/test-read-write-cursor cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-read-write-cursor.dir/link.txt --verbose=1 [ 70%] Linking CXX executable ../../../bin/meta-repair cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/meta-repair && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-repair.dir/link.txt --verbose=1 [ 70%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffmagic.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffmagic.c.o -MF CMakeFiles/copycat.dir/kff/ffmagic.c.o.d -o CMakeFiles/copycat.dir/kff/ffmagic.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffmagic.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-read-write-cursor.dir/link.d "CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o" -o ../../../bin/test-read-write-cursor /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f test-read-write-cursor.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv test-read-write-cursor test-read-write-cursor.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s test-read-write-cursor.3.2.1 test-read-write-cursor.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s test-read-write-cursor.3 test-read-write-cursor make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 70%] Built target test-read-write-cursor [ 71%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o -MF CMakeFiles/sratools.dir/build-version.cpp.o.d -o CMakeFiles/sratools.dir/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/build-version.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/meta-repair.dir/link.d "CMakeFiles/meta-repair.dir/meta-repair.c.o" -o ../../../bin/meta-repair /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f meta-repair.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv meta-repair meta-repair.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-repair.3.2.1 meta-repair.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s meta-repair.3 meta-repair make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 71%] Built target meta-repair [ 71%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o -MF CMakeFiles/sratools.dir/file-path.posix.cpp.o.d -o CMakeFiles/sratools.dir/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/file-path.posix.cpp [ 71%] Linking CXX executable ../../../bin/copycat cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/copycat && /usr/bin/cmake -E cmake_link_script CMakeFiles/copycat.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/copycat.dir/link.d CMakeFiles/copycat.dir/copycat.c.o CMakeFiles/copycat.dir/ccfileformat.c.o CMakeFiles/copycat.dir/cccat.c.o CMakeFiles/copycat.dir/cctree.c.o "CMakeFiles/copycat.dir/cctree-dump.c.o" CMakeFiles/copycat.dir/cctar.c.o CMakeFiles/copycat.dir/ccsra.c.o CMakeFiles/copycat.dir/ccsubchunk.c.o CMakeFiles/copycat.dir/ccfile.c.o CMakeFiles/copycat.dir/kff/fileformat.c.o CMakeFiles/copycat.dir/kff/ffext.c.o CMakeFiles/copycat.dir/kff/ffkey.c.o CMakeFiles/copycat.dir/kff/ffmagic.c.o -o ../../../bin/copycat /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libmagic.so cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f copycat.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv copycat copycat.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s copycat.3.2.1 copycat.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s copycat.3 copycat make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 71%] Built target copycat [ 71%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/driver-tool\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o -MF CMakeFiles/sratools.dir/proc.posix.cpp.o.d -o CMakeFiles/sratools.dir/proc.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.posix.cpp make -f tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/DependInfo.cmake "--color=" read-filter-redact make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 71%] Building C object tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/rd-filter-redact\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o -MF CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o.d -o CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact/read-filter-redact.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact/read-filter-redact.c: In function ‘enter_date_name_vers’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact/read-filter-redact.c:755:59: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 755 | rc = KMDataNodeWriteAttr ( node, "build", __DATE__ ); | ^~~~~~~~ make -f tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/build.make tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/DependInfo.cmake "--color=" vdb-copy make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/build.make tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 71%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/context.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/context.c.o -MF CMakeFiles/vdb-copy.dir/context.c.o.d -o CMakeFiles/vdb-copy.dir/context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/context.c [ 71%] Linking CXX executable ../../../bin/sra-info cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-info.dir/link.txt --verbose=1 [ 71%] Linking CXX executable ../../../bin/read-filter-redact cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/read-filter-redact.dir/link.txt --verbose=1 [ 71%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/helper.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/helper.c.o -MF CMakeFiles/vdb-copy.dir/helper.c.o.d -o CMakeFiles/vdb-copy.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/helper.c [ 71%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/coldefs.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/coldefs.c.o -MF CMakeFiles/vdb-copy.dir/coldefs.c.o.d -o CMakeFiles/vdb-copy.dir/coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/coldefs.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/read-filter-redact.dir/link.d "CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o" -o ../../../bin/read-filter-redact /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f read-filter-redact.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv read-filter-redact read-filter-redact.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s read-filter-redact.3.2.1 read-filter-redact.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s read-filter-redact.3 read-filter-redact make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/build.make tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/DependInfo.cmake "--color=" vdb-diff [ 71%] Built target read-filter-redact [ 71%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/get_platform.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/get_platform.c.o -MF CMakeFiles/vdb-copy.dir/get_platform.c.o.d -o CMakeFiles/vdb-copy.dir/get_platform.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/get_platform.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/sra-info.dir/link.d "CMakeFiles/sra-info.dir/main.cpp.o" "CMakeFiles/sra-info.dir/sra-info.cpp.o" "CMakeFiles/sra-info.dir/formatter.cpp.o" -o ../../../bin/sra-info /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/build.make tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-info.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-info sra-info.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-info.3.2.1 sra-info.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-info.3 sra-info make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 71%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/namelist_tools.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/namelist_tools.c.o -MF CMakeFiles/vdb-diff.dir/namelist_tools.c.o.d -o CMakeFiles/vdb-diff.dir/namelist_tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/namelist_tools.c [ 71%] Built target sra-info [ 72%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/coldefs.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/coldefs.c.o -MF CMakeFiles/vdb-diff.dir/coldefs.c.o.d -o CMakeFiles/vdb-diff.dir/coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/coldefs.c [ 73%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/copy_meta.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/copy_meta.c.o -MF CMakeFiles/vdb-copy.dir/copy_meta.c.o.d -o CMakeFiles/vdb-copy.dir/copy_meta.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/copy_meta.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/copy_meta.c: In function ‘enter_date_name_vers’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/copy_meta.c:301:59: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 301 | rc = KMDataNodeWriteAttr ( node, "build", __DATE__ ); | ^~~~~~~~ make -f tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/build.make tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/crc32sum /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/crc32sum /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/DependInfo.cmake "--color=" crc32sum make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/build.make tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Building C object tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/crc32sum.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/crc32sum && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/crc32sum.c.o -MF CMakeFiles/crc32sum.dir/crc32sum.c.o.d -o CMakeFiles/crc32sum.dir/crc32sum.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/crc32sum/crc32sum.c [ 73%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -MF CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o.d -o CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/vdb-diff-context.c [ 73%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/type_matcher.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/type_matcher.c.o -MF CMakeFiles/vdb-copy.dir/type_matcher.c.o.d -o CMakeFiles/vdb-copy.dir/type_matcher.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/type_matcher.c make -f tools/test-tools/test-download/CMakeFiles/test-download.dir/build.make tools/test-tools/test-download/CMakeFiles/test-download.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/test-download /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/test-download /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/test-download/CMakeFiles/test-download.dir/DependInfo.cmake "--color=" test-download make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/test-download/CMakeFiles/test-download.dir/build.make tools/test-tools/test-download/CMakeFiles/test-download.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Building C object tools/test-tools/test-download/CMakeFiles/test-download.dir/test-download.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/test-download && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/test-download/CMakeFiles/test-download.dir/test-download.c.o -MF CMakeFiles/test-download.dir/test-download.c.o.d -o CMakeFiles/test-download.dir/test-download.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/test-download/test-download.c [ 73%] Linking CXX executable ../../../bin/crc32sum make -f tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/build.make tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/kdb-index /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/kdb-index /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/DependInfo.cmake "--color=" kdb-index cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/crc32sum && /usr/bin/cmake -E cmake_link_script CMakeFiles/crc32sum.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/build.make tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Building C object tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/kdb-index.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/kdb-index && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/kdb-index.c.o -MF CMakeFiles/kdb-index.dir/kdb-index.c.o.d -o CMakeFiles/kdb-index.dir/kdb-index.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/kdb-index/kdb-index.c [ 73%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/cmn.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/cmn.c.o -MF CMakeFiles/vdb-diff.dir/cmn.c.o.d -o CMakeFiles/vdb-diff.dir/cmn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/cmn.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/crc32sum.dir/link.d CMakeFiles/crc32sum.dir/crc32sum.c.o -o ../../../bin/crc32sum /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f crc32sum.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv crc32sum crc32sum.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s crc32sum.3.2.1 crc32sum.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s crc32sum.3 crc32sum make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Built target crc32sum [ 73%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/row_by_row.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/row_by_row.c.o -MF CMakeFiles/vdb-diff.dir/row_by_row.c.o.d -o CMakeFiles/vdb-diff.dir/row_by_row.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/row_by_row.c [ 73%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/redactval.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/redactval.c.o -MF CMakeFiles/vdb-copy.dir/redactval.c.o.d -o CMakeFiles/vdb-copy.dir/redactval.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/redactval.c [ 73%] Linking CXX executable ../../../bin/kdb-index cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/kdb-index && /usr/bin/cmake -E cmake_link_script CMakeFiles/kdb-index.dir/link.txt --verbose=1 make -f tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build.make tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/pacbio-correct /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pacbio-correct /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/DependInfo.cmake "--color=" pacbio-correct make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build.make tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Building C object tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pacbio-correct && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o -MF CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o.d -o CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/pacbio-correct/pacbio-correct.c [ 73%] Linking CXX executable ../../../bin/test-download cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/test-download && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-download.dir/link.txt --verbose=1 [ 73%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/col_by_col.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/col_by_col.c.o -MF CMakeFiles/vdb-diff.dir/col_by_col.c.o.d -o CMakeFiles/vdb-diff.dir/col_by_col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/col_by_col.c [ 73%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/config_values.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/config_values.c.o -MF CMakeFiles/vdb-copy.dir/config_values.c.o.d -o CMakeFiles/vdb-copy.dir/config_values.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/config_values.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/kdb-index.dir/link.d "CMakeFiles/kdb-index.dir/kdb-index.c.o" -o ../../../bin/kdb-index /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f kdb-index.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv kdb-index kdb-index.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kdb-index.3.2.1 kdb-index.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s kdb-index.3 kdb-index make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Built target kdb-index [ 73%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/vdb-copy.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-copy\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/vdb-copy.c.o -MF CMakeFiles/vdb-copy.dir/vdb-copy.c.o.d -o CMakeFiles/vdb-copy.dir/vdb-copy.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/vdb-copy.c [ 73%] Linking CXX executable ../../../bin/pacbio-correct cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pacbio-correct && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-correct.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-download.dir/link.d "CMakeFiles/test-download.dir/test-download.c.o" -o ../../../bin/test-download /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f test-download.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv test-download test-download.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s test-download.3.2.1 test-download.3 [ 73%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-diff\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff.c.o -MF CMakeFiles/vdb-diff.dir/vdb-diff.c.o.d -o CMakeFiles/vdb-diff.dir/vdb-diff.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/vdb-diff.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s test-download.3 test-download make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build.make tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/schema-replace /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/schema-replace /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/DependInfo.cmake "--color=" schema-replace [ 73%] Built target test-download make -f tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build.make tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sortreadtest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sortreadtest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/DependInfo.cmake "--color=" sortreadtest make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build.make tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Building C object tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/schema-replace.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build.make tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/schema-replace && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/schema-replace.c.o -MF CMakeFiles/schema-replace.dir/schema-replace.c.o.d -o CMakeFiles/schema-replace.dir/schema-replace.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/schema-replace/schema-replace.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Building C object tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/sortreadtest.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sortreadtest && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/sortreadtest.c.o -MF CMakeFiles/sortreadtest.dir/sortreadtest.c.o.d -o CMakeFiles/sortreadtest.dir/sortreadtest.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sortreadtest/sortreadtest.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/pacbio-correct.dir/link.d "CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o" -o ../../../bin/pacbio-correct /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f pacbio-correct.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv pacbio-correct pacbio-correct.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-correct.3.2.1 pacbio-correct.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pacbio-correct.3 pacbio-correct make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Built target pacbio-correct make -f tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/build.make tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rowwritetest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rowwritetest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/DependInfo.cmake "--color=" rowwritetest make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/build.make tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Linking CXX executable ../../../bin/vdb-diff [ 73%] Building C object tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/rowwritetest.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rowwritetest && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/rowwritetest.c.o -MF CMakeFiles/rowwritetest.dir/rowwritetest.c.o.d -o CMakeFiles/rowwritetest.dir/rowwritetest.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rowwritetest/rowwritetest.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-diff.dir/link.txt --verbose=1 [ 74%] Linking CXX executable ../../../bin/sortreadtest cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sortreadtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/sortreadtest.dir/link.txt --verbose=1 [ 74%] Linking CXX executable ../../../bin/schema-replace cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/schema-replace && /usr/bin/cmake -E cmake_link_script CMakeFiles/schema-replace.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/vdb-diff.dir/link.d "CMakeFiles/vdb-diff.dir/namelist_tools.c.o" "CMakeFiles/vdb-diff.dir/coldefs.c.o" "CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o" "CMakeFiles/vdb-diff.dir/cmn.c.o" "CMakeFiles/vdb-diff.dir/row_by_row.c.o" "CMakeFiles/vdb-diff.dir/col_by_col.c.o" "CMakeFiles/vdb-diff.dir/vdb-diff.c.o" -o ../../../bin/vdb-diff /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-diff.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-diff vdb-diff.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-diff.3.2.1 vdb-diff.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-diff.3 vdb-diff make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/sortreadtest.dir/link.d CMakeFiles/sortreadtest.dir/sortreadtest.c.o -o ../../../bin/sortreadtest /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/schema-replace.dir/link.d "CMakeFiles/schema-replace.dir/schema-replace.c.o" -o ../../../bin/schema-replace /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sortreadtest.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f schema-replace.3.2.1 [ 74%] Built target vdb-diff cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv schema-replace schema-replace.3.2.1 make -f tools/test-tools/samview-util/CMakeFiles/samview-util.dir/build.make tools/test-tools/samview-util/CMakeFiles/samview-util.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/samview-util /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/samview-util /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/samview-util/CMakeFiles/samview-util.dir/DependInfo.cmake "--color=" samview-util cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s schema-replace.3.2.1 schema-replace.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sortreadtest sortreadtest.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sortreadtest.3.2.1 sortreadtest.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s schema-replace.3 schema-replace cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sortreadtest.3 sortreadtest make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/samview-util/CMakeFiles/samview-util.dir/build.make tools/test-tools/samview-util/CMakeFiles/samview-util.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Built target sortreadtest [ 74%] Built target schema-replace make -f tools/test-tools/testld/CMakeFiles/testld.dir/build.make tools/test-tools/testld/CMakeFiles/testld.dir/depend make -f tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build.make tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/testld /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/testld /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/testld/CMakeFiles/testld.dir/DependInfo.cmake "--color=" testld make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/txt2kdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/txt2kdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/DependInfo.cmake "--color=" txt2kdb [ 74%] Building C object tools/test-tools/samview-util/CMakeFiles/samview-util.dir/samview.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/testld/CMakeFiles/testld.dir/build.make tools/test-tools/testld/CMakeFiles/testld.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build.make tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/samview-util && /usr/bin/cc -DBMNEONOPT -DLINUX 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'/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Building C object tools/test-tools/testld/CMakeFiles/testld.dir/testld.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/testld && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/testld/CMakeFiles/testld.dir/testld.c.o -MF CMakeFiles/testld.dir/testld.c.o.d -o CMakeFiles/testld.dir/testld.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/testld/testld.c [ 74%] Building C object tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/txt2kdb.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/txt2kdb && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/txt2kdb.c.o -MF CMakeFiles/txt2kdb.dir/txt2kdb.c.o.d -o CMakeFiles/txt2kdb.dir/txt2kdb.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/txt2kdb/txt2kdb.c [ 74%] Linking CXX executable ../../../bin/vdb-copy cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-copy.dir/link.txt --verbose=1 [ 74%] Linking CXX executable ../../../bin/rowwritetest cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rowwritetest && /usr/bin/cmake -E cmake_link_script CMakeFiles/rowwritetest.dir/link.txt --verbose=1 [ 74%] Linking CXX executable ../../../bin/samview-util cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/samview-util && /usr/bin/cmake -E cmake_link_script CMakeFiles/samview-util.dir/link.txt --verbose=1 [ 74%] Linking CXX executable ../../../bin/testld cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/testld && /usr/bin/cmake -E cmake_link_script CMakeFiles/testld.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/vdb-copy.dir/link.d "CMakeFiles/vdb-copy.dir/context.c.o" "CMakeFiles/vdb-copy.dir/helper.c.o" "CMakeFiles/vdb-copy.dir/coldefs.c.o" "CMakeFiles/vdb-copy.dir/get_platform.c.o" "CMakeFiles/vdb-copy.dir/copy_meta.c.o" "CMakeFiles/vdb-copy.dir/type_matcher.c.o" "CMakeFiles/vdb-copy.dir/redactval.c.o" "CMakeFiles/vdb-copy.dir/config_values.c.o" "CMakeFiles/vdb-copy.dir/vdb-copy.c.o" -o ../../../bin/vdb-copy /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-copy.3.2.1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/rowwritetest.dir/link.d CMakeFiles/rowwritetest.dir/rowwritetest.c.o -o ../../../bin/rowwritetest /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-copy vdb-copy.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f rowwritetest.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-copy.3.2.1 vdb-copy.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv rowwritetest rowwritetest.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-copy.3 vdb-copy cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s rowwritetest.3.2.1 rowwritetest.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cmake -E copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/vdb-copy.kfg /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/ncbi/vdb-copy.kfg cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s rowwritetest.3 rowwritetest make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Built target rowwritetest make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build.make tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/depend /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/samview-util.dir/link.d "CMakeFiles/samview-util.dir/samview.c.o" -o ../../../bin/samview-util /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-factory /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-factory /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/DependInfo.cmake "--color=" sam-factory cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f samview-util.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv samview-util samview-util.3.2.1 [ 74%] Built target vdb-copy cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s samview-util.3.2.1 samview-util.3 make -f tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build.make tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-analyze /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-analyze /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/DependInfo.cmake "--color=" sam-analyze cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s samview-util.3 samview-util make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Linking CXX executable ../../../bin/txt2kdb make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build.make tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/txt2kdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/txt2kdb.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build.make tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Built target samview-util make -f tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build.make tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/depend [ 74%] Building CXX object tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/sam-factory.cpp.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/DependInfo.cmake "--color=" qa-stats cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-factory && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/sam-factory.cpp.o -MF CMakeFiles/sam-factory.dir/sam-factory.cpp.o.d -o CMakeFiles/sam-factory.dir/sam-factory.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-factory/sam-factory.cpp [ 74%] Building CXX object tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/main.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/main.cpp.o -MF CMakeFiles/sam-analyze.dir/main.cpp.o.d -o CMakeFiles/sam-analyze.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-analyze/main.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build.make tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/testld.dir/link.d CMakeFiles/testld.dir/testld.c.o -o ../../../bin/testld /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f testld.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv testld testld.3.2.1 [ 74%] Building CXX object tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/main.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s testld.3.2.1 testld.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/main.cpp.o -MF CMakeFiles/qa-stats.dir/main.cpp.o.d -o CMakeFiles/qa-stats.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats/main.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s testld.3 testld make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Built target testld make -f tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/build.make tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rnd2sra /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rnd2sra /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/DependInfo.cmake "--color=" rnd2sra make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/build.make tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Building CXX object tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rnd2sra && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o -MF CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o.d -o CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rnd2sra/src/rnd2sra.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/txt2kdb.dir/link.d CMakeFiles/txt2kdb.dir/txt2kdb.c.o -o ../../../bin/txt2kdb /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f txt2kdb.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv txt2kdb txt2kdb.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s txt2kdb.3.2.1 txt2kdb.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s txt2kdb.3 txt2kdb make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Built target txt2kdb make -f test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/build.make test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/libs/kfile_stream /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/libs/kfile_stream /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/DependInfo.cmake "--color=" Test_KFile_Stream make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/build.make test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Building CXX object test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/libs/kfile_stream && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o -MF CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o.d -o CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/libs/kfile_stream/custom_stream.cpp [ 74%] Linking C static library ../../ilib/libvdb-sqlite.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/vdb-sqlite && /usr/bin/cmake -P CMakeFiles/vdb-sqlite.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/vdb-sqlite && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-sqlite.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libvdb-sqlite.a "CMakeFiles/vdb-sqlite.dir/sqlite3.c.o" "CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o" /usr/bin/ranlib ../../ilib/libvdb-sqlite.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Built target vdb-sqlite make -f test/vdb/CMakeFiles/Test_VDB.dir/build.make test/vdb/CMakeFiles/Test_VDB.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb/CMakeFiles/Test_VDB.dir/DependInfo.cmake "--color=" Test_VDB make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/vdb/CMakeFiles/Test_VDB.dir/build.make test/vdb/CMakeFiles/Test_VDB.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Building CXX object test/vdb/CMakeFiles/Test_VDB.dir/test-vdb.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/vdb/CMakeFiles/Test_VDB.dir/test-vdb.cpp.o -MF CMakeFiles/Test_VDB.dir/test-vdb.cpp.o.d -o CMakeFiles/Test_VDB.dir/test-vdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb/test-vdb.cpp [ 74%] Linking CXX executable ../../../bin/sratools cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/sratools.dir/link.txt --verbose=1 /usr/lib/aarch64-linux-gnu/libncbi-vdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/sratools.dir/link.d CMakeFiles/sratools.dir/sratools.cpp.o CMakeFiles/sratools.dir/config.cpp.o "CMakeFiles/sratools.dir/command-line.cpp.o" "CMakeFiles/sratools.dir/run-source.cpp.o" CMakeFiles/sratools.dir/proc.cpp.o CMakeFiles/sratools.dir/uuid.cpp.o CMakeFiles/sratools.dir/accession.cpp.o CMakeFiles/sratools.dir/service.cpp.o "CMakeFiles/sratools.dir/json-parse.cpp.o" "CMakeFiles/sratools.dir/SDL-response.cpp.o" "CMakeFiles/sratools.dir/tool-args.cpp.o" "CMakeFiles/sratools.dir/build-version.cpp.o" "CMakeFiles/sratools.dir/file-path.posix.cpp.o" CMakeFiles/sratools.dir/proc.posix.cpp.o -o ../../../bin/sratools /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sratools.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sratools sratools.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3.2.1 sratools.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sratools.3 sratools make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Built target sratools make -f test/vdb/CMakeFiles/Test_WVDB.dir/build.make test/vdb/CMakeFiles/Test_WVDB.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb/CMakeFiles/Test_WVDB.dir/DependInfo.cmake "--color=" Test_WVDB make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/vdb/CMakeFiles/Test_WVDB.dir/build.make test/vdb/CMakeFiles/Test_WVDB.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Building CXX object test/vdb/CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/vdb/CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o -MF CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o.d -o CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb/test-wvdb.cpp [ 74%] Linking CXX executable ../../../test-bin/Test_KFile_Stream cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/libs/kfile_stream && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_KFile_Stream.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_KFile_Stream.dir/link.d CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o -o ../../../test-bin/Test_KFile_Stream /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Built target Test_KFile_Stream [ 74%] Building C object tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/sqlite3.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/sqlite3.c.o -MF CMakeFiles/sam-analyze.dir/sqlite3.c.o.d -o CMakeFiles/sam-analyze.dir/sqlite3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-analyze/sqlite3.c [ 74%] Linking CXX executable ../../test-bin/Test_WVDB cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_WVDB.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_WVDB.dir/link.d "CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o" -o ../../test-bin/Test_WVDB -lkapp /usr/lib/aarch64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Built target Test_WVDB [ 74%] Building CXX object tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/input.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/input.cpp.o -MF CMakeFiles/qa-stats.dir/input.cpp.o.d -o CMakeFiles/qa-stats.dir/input.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats/input.cpp make -f test/schema/CMakeFiles/Test_SraSchema_Unit.dir/build.make test/schema/CMakeFiles/Test_SraSchema_Unit.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/schema/CMakeFiles/Test_SraSchema_Unit.dir/DependInfo.cmake "--color=" Test_SraSchema_Unit [ 74%] Linking CXX executable ../../../bin/sam-factory cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-factory && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-factory.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/schema/CMakeFiles/Test_SraSchema_Unit.dir/build.make test/schema/CMakeFiles/Test_SraSchema_Unit.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Building CXX object test/schema/CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/schema && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/schema/CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o -MF CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o.d -o CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/schema/test-schema.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/sam-factory.dir/link.d "CMakeFiles/sam-factory.dir/sam-factory.cpp.o" -o ../../../bin/sam-factory /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Built target sam-factory make -f test/search/CMakeFiles/Test_SEARCH_agrep.dir/build.make test/search/CMakeFiles/Test_SEARCH_agrep.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/search/CMakeFiles/Test_SEARCH_agrep.dir/DependInfo.cmake "--color=" Test_SEARCH_agrep make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/search/CMakeFiles/Test_SEARCH_agrep.dir/build.make test/search/CMakeFiles/Test_SEARCH_agrep.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Building CXX object test/search/CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/search/CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o -MF CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o.d -o CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/test-agrep.cpp [ 74%] Linking CXX executable ../../test-bin/Test_SraSchema_Unit cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/schema && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSchema_Unit.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_SraSchema_Unit.dir/link.d "CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o" -o ../../test-bin/Test_SraSchema_Unit ../../ilib/libsra.a -lkapp /usr/lib/aarch64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Built target Test_SraSchema_Unit make -f test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/build.make test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/DependInfo.cmake "--color=" test-ngs-java make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/build.make test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/align-info/CMakeFiles/Build-align-info.dir/build.make test/external/align-info/CMakeFiles/Build-align-info.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/align-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/align-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/align-info/CMakeFiles/Build-align-info.dir/DependInfo.cmake "--color=" Build-align-info [ 75%] Building Java objects for test-ngs-java.jar cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-4.2/Modules/UseJava/ClearClassFiles.cmake --log-level STATUS make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/align-info/CMakeFiles/Build-align-info.dir/build.make test/external/align-info/CMakeFiles/Build-align-info.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/align-info/CMakeFiles/Build-align-info.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/javac -classpath :/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-java.jar:/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java/junit-4.11.jar:/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-java.jar:/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java/junit-4.11.jar -d /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir @/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/java_sources [ 75%] Built target Build-align-info [ 75%] Building C object test/search/CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/search && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/search/CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o -MF CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o.d -o CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c: In function ‘main_agrep_test’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c:229:13: warning: variable ‘slow’ set but not used [-Wunused-but-set-variable] 229 | int32_t slow = 0; | ^~~~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c:228:13: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 228 | int32_t count; | ^~~~~ make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/DependInfo.cmake "--color=" Test_Drivertool_BuildVersion make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o -MF CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-build-version.cpp [ 75%] Linking CXX executable ../../test-bin/Test_VDB cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_VDB.dir/link.txt --verbose=1 [ 75%] Linking CXX executable ../../../bin/qa-stats cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qa-stats.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_VDB.dir/link.d "CMakeFiles/Test_VDB.dir/test-vdb.cpp.o" -o ../../test-bin/Test_VDB -lkapp /usr/lib/aarch64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target Test_VDB [ 75%] Building CXX object test/search/CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/search/CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o -MF CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o.d -o CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/search-vdb.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/qa-stats.dir/link.d "CMakeFiles/qa-stats.dir/main.cpp.o" "CMakeFiles/qa-stats.dir/input.cpp.o" -o ../../../bin/qa-stats make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target qa-stats make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/DependInfo.cmake "--color=" Test_Drivertool_FilePath make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o -MF CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o.d -o CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-filepath.cpp [ 75%] Linking CXX executable ../../../test-bin/Test_Drivertool_BuildVersion cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_BuildVersion.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_Drivertool_BuildVersion.dir/link.d "CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o" -o ../../../test-bin/Test_Drivertool_BuildVersion make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target Test_Drivertool_BuildVersion make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/DependInfo.cmake "--color=" Test_Drivertool_CommandLine make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o -MF CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-command-line.cpp Note: ngs_test_lib_load.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/java_compiled_test-ngs-java [ 75%] Generating CMakeFiles/test-ngs-java.dir/java_class_filelist cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-4.2/Modules/UseJava/ClassFilelist.cmake [ 75%] Creating Java archive test-ngs-java.jar cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/test-ngs-java.jar @java_class_filelist cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=test-ngs-java.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-4.2/Modules/UseJava/Symlinks.cmake make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target test-ngs-java make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/DependInfo.cmake "--color=" Test_Drivertool_JsonParsing make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 76%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o -MF CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o.d -o CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-json-parse.cpp make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/DependInfo.cmake "--color=" Test_Drivertool_SDLResponse make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 76%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o -MF CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o.d -o CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-sdl-response.cpp [ 76%] Linking CXX executable ../../../test-bin/Test_Drivertool_CommandLine cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_CommandLine.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_Drivertool_CommandLine.dir/link.d "CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o" -o ../../../test-bin/Test_Drivertool_CommandLine make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 76%] Built target Test_Drivertool_CommandLine make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/DependInfo.cmake "--color=" Test_Drivertool_Accession make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 76%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o -MF CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o.d -o CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-accession.cpp [ 76%] Linking CXX executable ../../../bin/rnd2sra cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/rnd2sra && /usr/bin/cmake -E cmake_link_script CMakeFiles/rnd2sra.dir/link.txt --verbose=1 /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/rnd2sra.dir/link.d CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o -o ../../../bin/rnd2sra /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lstdc++fs make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 76%] Built target rnd2sra make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/DependInfo.cmake "--color=" Test_Drivertool_UUID make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o -MF CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o.d -o CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-uuid.cpp [ 77%] Linking CXX executable ../../../test-bin/Test_Drivertool_Accession cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_Accession.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_Drivertool_Accession.dir/link.d "CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o" -o ../../../test-bin/Test_Drivertool_Accession make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target Test_Drivertool_Accession make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/DependInfo.cmake "--color=" Test_Drivertool_RunSource make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-run-source.cpp [ 77%] Linking CXX executable ../../../test-bin/Test_Drivertool_UUID cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_UUID.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_Drivertool_UUID.dir/link.d "CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o" -o ../../../test-bin/Test_Drivertool_UUID make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target Test_Drivertool_UUID make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/DependInfo.cmake "--color=" Test_Drivertool_ToolArgs [ 77%] Linking CXX executable ../../../test-bin/Test_Drivertool_JsonParsing make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_JsonParsing.dir/link.txt --verbose=1 [ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-tool-args.cpp [ 77%] Linking CXX executable ../../test-bin/Test_SEARCH_agrep cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SEARCH_agrep.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_Drivertool_JsonParsing.dir/link.d "CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o" -o ../../../test-bin/Test_Drivertool_JsonParsing make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target Test_Drivertool_JsonParsing [ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/tool-args.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_SEARCH_agrep.dir/link.d "CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o" "CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o" "CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o" -o ../../test-bin/Test_SEARCH_agrep /usr/lib/aarch64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a -lncbi-vdb ../../ilib/libksrch.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target Test_SEARCH_agrep make -f test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build.make test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/DependInfo.cmake "--color=" Build-kdbmeta make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build.make test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target Build-kdbmeta [ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp [ 77%] Linking CXX executable ../../../test-bin/Test_Drivertool_FilePath cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_FilePath.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_Drivertool_FilePath.dir/link.d "CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o" -o ../../../test-bin/Test_Drivertool_FilePath /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target Test_Drivertool_FilePath [ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/command-line.cpp [ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/build-version.cpp [ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/file-path.posix.cpp make -f test/external/prefetch/CMakeFiles/Build-prefetch.dir/build.make test/external/prefetch/CMakeFiles/Build-prefetch.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/prefetch/CMakeFiles/Build-prefetch.dir/DependInfo.cmake "--color=" Build-prefetch make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/prefetch/CMakeFiles/Build-prefetch.dir/build.make test/external/prefetch/CMakeFiles/Build-prefetch.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/prefetch/CMakeFiles/Build-prefetch.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target Build-prefetch make -f test/external/prefetch/CMakeFiles/test-quality.dir/build.make test/external/prefetch/CMakeFiles/test-quality.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/prefetch/CMakeFiles/test-quality.dir/DependInfo.cmake "--color=" test-quality make -f test/external/srapath/CMakeFiles/Build-srapath.dir/build.make test/external/srapath/CMakeFiles/Build-srapath.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/srapath/CMakeFiles/Build-srapath.dir/DependInfo.cmake "--color=" Build-srapath make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/srapath/CMakeFiles/Build-srapath.dir/build.make test/external/srapath/CMakeFiles/Build-srapath.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/srapath/CMakeFiles/Build-srapath.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/prefetch/CMakeFiles/test-quality.dir/build.make test/external/prefetch/CMakeFiles/test-quality.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target Build-srapath [ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o [ 77%] Building CXX object test/external/prefetch/CMakeFiles/test-quality.dir/test-quality.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/command-line.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/prefetch && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/prefetch\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/prefetch/CMakeFiles/test-quality.dir/test-quality.cpp.o -MF CMakeFiles/test-quality.dir/test-quality.cpp.o.d -o CMakeFiles/test-quality.dir/test-quality.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/prefetch/test-quality.cpp [ 77%] Linking CXX executable ../../../test-bin/Test_Drivertool_SDLResponse cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_SDLResponse.dir/link.txt --verbose=1 [ 77%] Linking CXX executable ../../../test-bin/test-quality cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/prefetch && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-quality.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_Drivertool_SDLResponse.dir/link.d "CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o" -o ../../../test-bin/Test_Drivertool_SDLResponse make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target Test_Drivertool_SDLResponse [ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/SDL-response.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-quality.dir/link.d "CMakeFiles/test-quality.dir/test-quality.cpp.o" -o ../../../test-bin/test-quality /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target test-quality [ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/file-path.posix.cpp [ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/json-parse.cpp [ 77%] Linking CXX executable ../../../test-bin/Test_Drivertool_ToolArgs cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_ToolArgs.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_Drivertool_ToolArgs.dir/link.d "CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o" -o ../../../test-bin/Test_Drivertool_ToolArgs /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target Test_Drivertool_ToolArgs make -f test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build.make test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/DependInfo.cmake "--color=" Build-sra-pileup make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build.make test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target Build-sra-pileup make -f test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build.make test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/DependInfo.cmake "--color=" Build-sra-stat make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build.make test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target Build-sra-stat make -f test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build.make test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/DependInfo.cmake "--color=" testAssemblyStatistics make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build.make test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Building CXX object test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/sra-stat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -MF CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o.d -o CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-stat/testAssemblyStatistics.cpp [ 77%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/build-version.cpp [ 77%] Linking CXX executable ../../../bin/bam-load cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam-load.dir/link.txt --verbose=1 make -f test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build.make test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/DependInfo.cmake "--color=" test-vdb-config-model make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build.make test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Building CXX object test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-config && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o -MF CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o.d -o CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config/test-vdb-config-model.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/bam-load.dir/link.d "CMakeFiles/bam-load.dir/bam-loader.c.o" "CMakeFiles/bam-load.dir/bam.c.o" "CMakeFiles/bam-load.dir/sam.c.o" "CMakeFiles/bam-load.dir/alignment-writer.c.o" "CMakeFiles/bam-load.dir/reference-writer.c.o" "CMakeFiles/bam-load.dir/sequence-writer.c.o" "CMakeFiles/bam-load.dir/loader-imp.c.o" "CMakeFiles/bam-load.dir/mem-bank.cpp.o" "CMakeFiles/bam-load.dir/low-match-count.cpp.o" -o ../../../bin/bam-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lz cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f bam-load.3.2.1 make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/depend cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv bam-load bam-load.3.2.1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/DependInfo.cmake "--color=" Test_Vdb_dump_view-spec cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s bam-load.3.2.1 bam-load.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s bam-load.3 bam-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Building CXX object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump/test-view-spec.cpp [ 77%] Built target bam-load [ 77%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-view-spec.c [ 78%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-helper.c [ 79%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/tool-args.cpp [ 79%] Linking CXX executable ../../../test-bin/testAssemblyStatistics cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-stat && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAssemblyStatistics.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/testAssemblyStatistics.dir/link.d CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -o ../../../test-bin/testAssemblyStatistics /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 79%] Built target testAssemblyStatistics make -f test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build.make test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/DependInfo.cmake "--color=" vdb-dump-makedb make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build.make test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 79%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o [ 79%] Building CXX object test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -MF CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o.d -o CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump/makedb.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-context.c make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/DependInfo.cmake "--color=" Test_Vdb_dump_view-alias make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 79%] Building CXX object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -MF CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o.d -o CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump/test-view-alias.cpp [ 79%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-coldefs.c [ 79%] Linking CXX executable ../../../test-bin/vdb-dump-makedb cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-dump-makedb.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/vdb-dump-makedb.dir/link.d "CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o" -o ../../../test-bin/vdb-dump-makedb /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 79%] Built target vdb-dump-makedb make -f test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/build.make test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/DependInfo.cmake "--color=" Test_VdbValidate_Unit make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/build.make test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 79%] Building CXX object test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-validate && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-validate\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o -MF CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o.d -o CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-validate/test-vdb-validate.cpp [ 79%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/vdb-dump\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-str.c [ 79%] Linking CXX executable ../../../test-bin/Test_Vdb_dump_view-alias cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Vdb_dump_view-alias.dir/link.txt --verbose=1 make -f test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build.make test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/DependInfo.cmake "--color=" Build-vdb-validate make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build.make test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 79%] Built target Build-vdb-validate make -f test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build.make test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/DependInfo.cmake "--color=" Test_SraInfo_Unit make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build.make test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_Vdb_dump_view-alias.dir/link.d "CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o" -o ../../../test-bin/Test_Vdb_dump_view-alias /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 79%] Built target Test_Vdb_dump_view-alias [ 80%] Building CXX object test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o make -f test/external/sra-info/CMakeFiles/Build-sra-info.dir/build.make test/external/sra-info/CMakeFiles/Build-sra-info.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-info/CMakeFiles/Build-sra-info.dir/DependInfo.cmake "--color=" Build-sra-info cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-info && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/external/sra-info\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o -MF CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o.d -o CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/test-sra-info.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/sra-info/CMakeFiles/Build-sra-info.dir/build.make test/external/sra-info/CMakeFiles/Build-sra-info.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/sra-info/CMakeFiles/Build-sra-info.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 80%] Built target Build-sra-info make -f test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build.make test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/DependInfo.cmake "--color=" Build-bam-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build.make test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 80%] Built target Build-bam-load make -f test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build.make test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/DependInfo.cmake "--color=" Test_BamLoader_platform make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build.make test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 81%] Building CXX object test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o -MF CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o.d -o CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load/sam-platform.cpp make -f test/loaders/kar/CMakeFiles/Build-kar.dir/build.make test/loaders/kar/CMakeFiles/Build-kar.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/kar/CMakeFiles/Build-kar.dir/DependInfo.cmake "--color=" Build-kar [ 81%] Linking CXX executable ../../../test-bin/Test_BamLoader_platform cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/bam-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_BamLoader_platform.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/kar/CMakeFiles/Build-kar.dir/build.make test/loaders/kar/CMakeFiles/Build-kar.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/loaders/kar/CMakeFiles/Build-kar.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 81%] Built target Build-kar make -f test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/build.make test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/DependInfo.cmake "--color=" Test_KAPP_qfile make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/build.make test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 81%] Building C object test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/loaders/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o -MF CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o.d -o CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/qfiletest.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_BamLoader_platform.dir/link.d "CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o" -o ../../../test-bin/Test_BamLoader_platform make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 81%] Built target Test_BamLoader_platform make -f test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/DependInfo.cmake "--color=" Test_LOADERFILE make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 81%] Building CXX object test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/loaders/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o -MF CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o.d -o CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/test-loaderfile.cpp [ 82%] Linking CXX executable ../../../test-bin/Test_KAPP_qfile cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_KAPP_qfile.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_KAPP_qfile.dir/link.d CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o -o ../../../test-bin/Test_KAPP_qfile ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Built target Test_KAPP_qfile make -f test/loaders/loader/CMakeFiles/Test_LOADER.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADER.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader/CMakeFiles/Test_LOADER.dir/DependInfo.cmake "--color=" Test_LOADER make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/loader/CMakeFiles/Test_LOADER.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADER.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Building CXX object test/loaders/loader/CMakeFiles/Test_LOADER.dir/loadertest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/loaders/loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/loader/CMakeFiles/Test_LOADER.dir/loadertest.cpp.o -MF CMakeFiles/Test_LOADER.dir/loadertest.cpp.o.d -o CMakeFiles/Test_LOADER.dir/loadertest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/loadertest.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/loadertest.cpp:307:117: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 307 | REQUIRE_RC ( KLoaderMeta_Write ( node, LoaderName.c_str(), __DATE__, FormatterName.c_str(), KAppVersion() ) ); | ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/loadertest.cpp:321:80: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 321 | REQUIRE_EQ ( string ( __DATE__), GetMetadata ( "SOFTWARE/loader", "date" ) ); | ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/loadertest.cpp:350:143: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 350 | REQUIRE_RC ( KLoaderMeta_WriteWithVersion ( node, LoaderName.c_str(), __DATE__, LoaderVersion, FormatterName.c_str(), KAppVersion() ) ); | ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/loadertest.cpp:364:80: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 364 | REQUIRE_EQ ( string ( __DATE__), GetMetadata ( "SOFTWARE/loader", "date" ) ); | ^ [ 82%] Linking CXX executable ../../../test-bin/Test_VdbValidate_Unit cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-validate && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_VdbValidate_Unit.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_VdbValidate_Unit.dir/link.d "CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o" -o ../../../test-bin/Test_VdbValidate_Unit /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Built target Test_VdbValidate_Unit make -f test/loaders/sharq/CMakeFiles/test-regexpr.dir/build.make test/loaders/sharq/CMakeFiles/test-regexpr.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq/CMakeFiles/test-regexpr.dir/DependInfo.cmake "--color=" test-regexpr make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/sharq/CMakeFiles/test-regexpr.dir/build.make test/loaders/sharq/CMakeFiles/test-regexpr.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Building CXX object test/loaders/sharq/CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/include -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o -MF CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o.d -o CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-regexpr.cpp [ 82%] Linking CXX executable ../../../test-bin/Test_Drivertool_RunSource cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_RunSource.dir/link.txt --verbose=1 [ 82%] Linking CXX executable ../../../test-bin/Test_Vdb_dump_view-spec cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Vdb_dump_view-spec.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_Drivertool_RunSource.dir/link.d "CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o" -o ../../../test-bin/Test_Drivertool_RunSource /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Built target Test_Drivertool_RunSource make -f test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build.make test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/DependInfo.cmake "--color=" Build-sra-sort make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build.make test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Built target Build-sra-sort make -f test/internal/align/CMakeFiles/Test_Align_samextract.dir/build.make test/internal/align/CMakeFiles/Test_Align_samextract.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align/CMakeFiles/Test_Align_samextract.dir/DependInfo.cmake "--color=" Test_Align_samextract make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/internal/align/CMakeFiles/Test_Align_samextract.dir/build.make test/internal/align/CMakeFiles/Test_Align_samextract.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Building CXX object test/internal/align/CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/align\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/../ncbi-vdb/interfaces/ext -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/internal/align/CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o -MF CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o.d -o CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align/test-samextract.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_Vdb_dump_view-spec.dir/link.d "CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o" -o ../../../test-bin/Test_Vdb_dump_view-spec /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Built target Test_Vdb_dump_view-spec make -f test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build.make test/internal/align-cache/CMakeFiles/Build-align-cache.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align-cache /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align-cache /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align-cache/CMakeFiles/Build-align-cache.dir/DependInfo.cmake "--color=" Build-align-cache make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build.make test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Built target Build-align-cache make -f test/internal/copycat/CMakeFiles/Build-copycat.dir/build.make test/internal/copycat/CMakeFiles/Build-copycat.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat/CMakeFiles/Build-copycat.dir/DependInfo.cmake "--color=" Build-copycat make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/internal/copycat/CMakeFiles/Build-copycat.dir/build.make test/internal/copycat/CMakeFiles/Build-copycat.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/internal/copycat/CMakeFiles/Build-copycat.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Built target Build-copycat make -f test/internal/copycat/CMakeFiles/Test_KFF.dir/build.make test/internal/copycat/CMakeFiles/Test_KFF.dir/depend [ 82%] Linking CXX executable ../../../test-bin/Test_LOADERFILE make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat/CMakeFiles/Test_KFF.dir/DependInfo.cmake "--color=" Test_KFF cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_LOADERFILE.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/internal/copycat/CMakeFiles/Test_KFF.dir/build.make test/internal/copycat/CMakeFiles/Test_KFF.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Building CXX object test/internal/copycat/CMakeFiles/Test_KFF.dir/kfftest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/kfftest.cpp.o -MF CMakeFiles/Test_KFF.dir/kfftest.cpp.o.d -o CMakeFiles/Test_KFF.dir/kfftest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat/kfftest.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_LOADERFILE.dir/link.d "CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o" -o ../../../test-bin/Test_LOADERFILE ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Built target Test_LOADERFILE make -f test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build.make test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/make-read-filter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/make-read-filter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/DependInfo.cmake "--color=" Build-make-read-filter make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build.make test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Built target Build-make-read-filter make -f test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build.make test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/read-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/read-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/DependInfo.cmake "--color=" Build-read-filter-redact make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build.make test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 83%] Linking CXX executable ../../../test-bin/Test_LOADER cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_LOADER.dir/link.txt --verbose=1 [ 83%] Built target Build-read-filter-redact [ 83%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffext.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_LOADER.dir/link.d CMakeFiles/Test_LOADER.dir/loadertest.cpp.o -o ../../../test-bin/Test_LOADER ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 83%] Built target Test_LOADER make -f test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build.make test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/vdb-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/vdb-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/DependInfo.cmake "--color=" Build-vdb-copy make -f test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build.make test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/vdb-diff /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/vdb-diff /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/DependInfo.cmake "--color=" Build-vdb-diff make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build.make test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build.make test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 83%] Built target Build-vdb-copy make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/DependInfo.cmake "--color=" Test_qa-stats_Input [ 83%] Built target Build-vdb-diff make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 83%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffkey.c [ 83%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o -MF CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o.d -o CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-input.cpp [ 83%] Linking CXX executable ../../../test-bin/test-vdb-config-model cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-config && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vdb-config-model.dir/link.txt --verbose=1 [ 83%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/fileformat.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-vdb-config-model.dir/link.d "CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o" -o ../../../test-bin/test-vdb-config-model /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 83%] Built target test-vdb-config-model [ 83%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/copycat\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffmagic.c [ 83%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o -MF CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o.d -o CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats/input.cpp make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/DependInfo.cmake "--color=" Test_qa-stats_Output make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 83%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o -MF CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o.d -o CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-output.cpp [ 83%] Linking CXX executable ../../../test-bin/Test_KFF cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/copycat && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_KFF.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_KFF.dir/link.d CMakeFiles/Test_KFF.dir/kfftest.cpp.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o -o ../../../test-bin/Test_KFF /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmagic make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 83%] Built target Test_KFF make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/DependInfo.cmake "--color=" Test_qa-stats_Fingerprint make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 83%] Linking CXX executable ../../../test-bin/test-regexpr cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-regexpr.dir/link.txt --verbose=1 [ 83%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o -MF CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o.d -o CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-finger.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-regexpr.dir/link.d "CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o" -o ../../../test-bin/test-regexpr /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lre2 -labsl_string_view make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 83%] Built target test-regexpr make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/DependInfo.cmake "--color=" Test_qa-stats_Hashing make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o -MF CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o.d -o CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-hashing.cpp make -f ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build.make ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-c++ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-c++ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/DependInfo.cmake "--color=" ncbi-ngs-c++ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build.make ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Building CXX object ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"ngs/ncbi/ngs-c++\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o -MF CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o.d -o CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-c++/NCBI-NGS.cpp [ 84%] Linking CXX static library ../../../lib/libncbi-ngs-c++.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -P CMakeFiles/ncbi-ngs-c++.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs-c++.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libncbi-ngs-c++.a "CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" /usr/bin/ranlib ../../../lib/libncbi-ngs-c++.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && rm -f libncbi-ngs-c++.a.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && mv libncbi-ngs-c++.a libncbi-ngs-c++.a.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a.3.2.1 libncbi-ngs-c++.a.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a.3 libncbi-ngs-c++.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a libncbi-ngs-c++-static.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Built target ncbi-ngs-c++ make -f ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/DependInfo.cmake "--color=" ngs-doc-jar make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc && sh -c /usr/bin/jar\ -cf\ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-doc.jar\ . make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Built target ngs-doc-jar make -f ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/DependInfo.cmake "--color=" ngs-src-jar make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && sh -c /usr/bin/jar\ -cf\ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-src.jar\ \ ngs/ErrorMsg.java\ ngs/Statistics.java\ ngs/Fragment.java\ ngs/FragmentIterator.java\ ngs/Read.java\ ngs/ReadIterator.java\ ngs/ReadGroup.java\ ngs/ReadGroupIterator.java\ ngs/Alignment.java\ ngs/AlignmentIterator.java\ ngs/PileupEvent.java\ ngs/PileupEventIterator.java\ ngs/Pileup.java\ ngs/PileupIterator.java\ ngs/Reference.java\ ngs/ReferenceIterator.java\ ngs/ReadCollection.java\ ngs/Package.java\ ngs/itf/Refcount.java\ ngs/itf/StatisticsItf.java\ ngs/itf/FragmentItf.java\ ngs/itf/FragmentIteratorItf.java\ ngs/itf/ReadItf.java\ ngs/itf/ReadIteratorItf.java\ ngs/itf/ReadGroupItf.java\ ngs/itf/ReadGroupIteratorItf.java\ ngs/itf/AlignmentItf.java\ ngs/itf/AlignmentIteratorItf.java\ ngs/itf/PileupEventItf.java\ ngs/itf/PileupEventIteratorItf.java\ ngs/itf/PileupItf.java\ ngs/itf/PileupIteratorItf.java\ ngs/itf/ReferenceItf.java\ ngs/itf/ReferenceIteratorItf.java\ ngs/itf/ReadCollectionItf.java\ gov/nih/nlm/ncbi/ngs/DownloadManager.java\ gov/nih/nlm/ncbi/ngs/FileCreator.java\ gov/nih/nlm/ncbi/ngs/HttpManager.java\ gov/nih/nlm/ncbi/ngs/LibDependencies.java\ gov/nih/nlm/ncbi/ngs/LibManager.java\ gov/nih/nlm/ncbi/ngs/LibPathIterator.java\ gov/nih/nlm/ncbi/ngs/LibVersionChecker.java\ gov/nih/nlm/ncbi/ngs/LMProperties.java\ gov/nih/nlm/ncbi/ngs/Logger.java\ gov/nih/nlm/ncbi/ngs/Manager.java\ gov/nih/nlm/ncbi/ngs/NGS.java\ gov/nih/nlm/ncbi/ngs/Version.java\ gov/nih/nlm/ncbi/ngs/error/LibraryLoadError.java\ gov/nih/nlm/ncbi/ngs/error/LibraryNotFoundError.java\ gov/nih/nlm/ncbi/ngs/error/LibraryIncompatibleVersionError.java\ gov/nih/nlm/ncbi/ngs/error/cause/ConnectionProblemCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/DownloadDisabledCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/InvalidLibraryCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/JvmErrorCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/LibraryLoadCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/OutdatedJarCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/PrereleaseReqLibCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/UnsupportedArchCause.java make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Built target ngs-src-jar make -f ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/build.make ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/DependInfo.cmake "--color=" ngs-examples make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/build.make ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Building Java objects for ngs-examples.jar cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-4.2/Modules/UseJava/ClearClassFiles.cmake --log-level STATUS cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/javac -classpath :/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-java.jar -d /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir @/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/java_sources [ 84%] Linking CXX executable ../../../test-bin/Test_Align_samextract cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Align_samextract.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_Align_samextract.dir/link.d "CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o" -o ../../../test-bin/Test_Align_samextract -lsam-extract /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Built target Test_Align_samextract make -f libs/general-writer/CMakeFiles/gw-dumper.dir/build.make libs/general-writer/CMakeFiles/gw-dumper.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/CMakeFiles/gw-dumper.dir/DependInfo.cmake "--color=" gw-dumper make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/general-writer/CMakeFiles/gw-dumper.dir/build.make libs/general-writer/CMakeFiles/gw-dumper.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Building CXX object libs/general-writer/CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/general-writer/CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o -MF CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o.d -o CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/gw-dumper.cpp [ 84%] Linking CXX executable ../../../test-bin/Test_SraInfo_Unit cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sra-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraInfo_Unit.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/java_compiled_ngs-examples [ 84%] Linking CXX executable ../../../test-bin/Test_qa-stats_Input cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Input.dir/link.txt --verbose=1 [ 84%] Generating CMakeFiles/ngs-examples.dir/java_class_filelist cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-4.2/Modules/UseJava/ClassFilelist.cmake [ 84%] Creating Java archive ngs-examples.jar cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-examples.jar @java_class_filelist /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_SraInfo_Unit.dir/link.d "CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o" -o ../../../test-bin/Test_SraInfo_Unit /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Built target Test_SraInfo_Unit make -f libs/general-writer/test/CMakeFiles/test-general-writer.dir/build.make libs/general-writer/test/CMakeFiles/test-general-writer.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/test/CMakeFiles/test-general-writer.dir/DependInfo.cmake "--color=" test-general-writer [ 84%] Linking CXX executable ../../../test-bin/Test_qa-stats_Fingerprint make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/general-writer/test/CMakeFiles/test-general-writer.dir/build.make libs/general-writer/test/CMakeFiles/test-general-writer.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Fingerprint.dir/link.txt --verbose=1 [ 84%] Building CXX object libs/general-writer/test/CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/general-writer/test/CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o -MF CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o.d -o CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test/test-general-writer.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Input.dir/link.d "CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o" "CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o" -o ../../../test-bin/Test_qa-stats_Input /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Built target Test_qa-stats_Input make -f tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build.make tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/DependInfo.cmake "--color=" latf-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build.make tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/spot-assembler.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/spot-assembler.c.o -MF CMakeFiles/latf-load.dir/spot-assembler.c.o.d -o CMakeFiles/latf-load.dir/spot-assembler.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/spot-assembler.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Fingerprint.dir/link.d "CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o" -o ../../../test-bin/Test_qa-stats_Fingerprint /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-examples.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-4.2/Modules/UseJava/Symlinks.cmake [ 84%] Built target Test_qa-stats_Fingerprint make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-writer.c.o -MF CMakeFiles/latf-load.dir/common-writer.c.o.d -o CMakeFiles/latf-load.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-writer.c [ 84%] Built target ngs-examples make -f tools/loaders/sharq/CMakeFiles/sharq.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq/CMakeFiles/sharq.dir/DependInfo.cmake "--color=" sharq make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/sharq/CMakeFiles/sharq.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Building CXX object tools/loaders/sharq/CMakeFiles/sharq.dir/fastq_parse.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/include -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/../../.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/sharq/CMakeFiles/sharq.dir/fastq_parse.cpp.o -MF CMakeFiles/sharq.dir/fastq_parse.cpp.o.d -o CMakeFiles/sharq.dir/fastq_parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_parse.cpp [ 84%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/sequence-writer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/sequence-writer.c.o -MF CMakeFiles/latf-load.dir/sequence-writer.c.o.d -o CMakeFiles/latf-load.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/sequence-writer.c [ 85%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-reader.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-reader.c.o -MF CMakeFiles/latf-load.dir/common-reader.c.o.d -o CMakeFiles/latf-load.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-reader.c [ 85%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-reader.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-reader.c.o -MF CMakeFiles/latf-load.dir/fastq-reader.c.o.d -o CMakeFiles/latf-load.dir/fastq-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/fastq-reader.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test/test-general-writer.cpp: In function ‘void ncbi::runTest(int, const char**, const char*, const char*)’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test/test-general-writer.cpp:295:20: warning: ‘gw’ may be used uninitialized [-Wmaybe-uninitialized] 295 | delete gw; | ^~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test/test-general-writer.cpp:232:24: note: ‘gw’ was declared here 232 | GeneralWriter *gw; | ^~ [ 85%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o -MF CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o.d -o CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-grammar.c [ 85%] Linking CXX executable ../../../test-bin/Test_qa-stats_Output cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Output.dir/link.txt --verbose=1 make -f tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/DependInfo.cmake "--color=" Build-general-loader make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build'. make[3]: 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config/CMakeFiles/vdb-config.dir/DependInfo.cmake "--color=" vdb-config make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/vdb-config/CMakeFiles/vdb-config.dir/build.make tools/external/vdb-config/CMakeFiles/vdb-config.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 85%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT 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'/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Built target Test_qa-stats_Output [ 86%] Building C object tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o -MF CMakeFiles/vdb-config.dir/vdb-config.c.o.d -o CMakeFiles/vdb-config.dir/vdb-config.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/vdb-config.c [ 86%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-lex.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-misleading-indentation -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -MF CMakeFiles/latf-load.dir/zz_fastq-lex.c.o.d -o CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-lex.c [ 86%] Linking CXX executable ../../../test-bin/Test_qa-stats_Hashing cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Hashing.dir/link.txt --verbose=1 [ 86%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/id2name.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/id2name.c.o -MF CMakeFiles/latf-load.dir/id2name.c.o.d -o 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tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-loader.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-loader.c.o -MF CMakeFiles/latf-load.dir/fastq-loader.c.o.d -o CMakeFiles/latf-load.dir/fastq-loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/fastq-loader.c [ 86%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o -MF CMakeFiles/vdb-config.dir/interactive2.cpp.o.d -o CMakeFiles/vdb-config.dir/interactive2.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/interactive2.cpp [ 86%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/loader-imp.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/fastq-loader\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/loader-imp.c.o -MF CMakeFiles/latf-load.dir/loader-imp.c.o.d -o CMakeFiles/latf-load.dir/loader-imp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/loader-imp.c make -f tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/build.make tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-sql /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/DependInfo.cmake "--color=" vdb-sql make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/build.make tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/loader-imp.c: In function ‘WriteLoaderSignature’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/loader-imp.c:180:48: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 180 | rc = KLoaderMeta_Write(node, progName, __DATE__, "FASTQ", KAppVersion()); | ^~~~~~~~ [ 86%] Building C object tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/vdb_shell.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-sql\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/vdb_shell.c.o -MF CMakeFiles/vdb-sql.dir/vdb_shell.c.o.d -o CMakeFiles/vdb-sql.dir/vdb_shell.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-sql/vdb_shell.c [ 86%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/vdb-config\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -MF CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o.d -o CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/vdb-config-model.cpp [ 86%] Linking CXX executable ../../../bin/latf-load cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/latf-load.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/latf-load.dir/link.d "CMakeFiles/latf-load.dir/spot-assembler.c.o" "CMakeFiles/latf-load.dir/common-writer.c.o" "CMakeFiles/latf-load.dir/sequence-writer.c.o" "CMakeFiles/latf-load.dir/common-reader.c.o" "CMakeFiles/latf-load.dir/fastq-reader.c.o" "CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o" "CMakeFiles/latf-load.dir/zz_fastq-lex.c.o" "CMakeFiles/latf-load.dir/id2name.c.o" "CMakeFiles/latf-load.dir/fastq-loader.c.o" "CMakeFiles/latf-load.dir/loader-imp.c.o" -o ../../../bin/latf-load ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f latf-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv latf-load latf-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s latf-load.3.2.1 latf-load.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s latf-load.3 latf-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Built target latf-load make -f tools/internal/vdb-sql/CMakeFiles/fastconv.dir/build.make tools/internal/vdb-sql/CMakeFiles/fastconv.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-sql /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql/CMakeFiles/fastconv.dir/DependInfo.cmake "--color=" fastconv make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/vdb-sql/CMakeFiles/fastconv.dir/build.make tools/internal/vdb-sql/CMakeFiles/fastconv.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Building C object tools/internal/vdb-sql/CMakeFiles/fastconv.dir/fastconv.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql && /usr/bin/cc -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/internal/vdb-sql\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-sql/CMakeFiles/fastconv.dir/fastconv.c.o -MF CMakeFiles/fastconv.dir/fastconv.c.o.d -o CMakeFiles/fastconv.dir/fastconv.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-sql/fastconv.c [ 86%] Linking CXX executable ../../../bin/fastconv cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastconv.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/fastconv.dir/link.d CMakeFiles/fastconv.dir/fastconv.c.o -o ../../../bin/fastconv /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libvdb-sqlite.a ../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f fastconv.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv fastconv fastconv.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastconv.3.2.1 fastconv.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s fastconv.3 fastconv make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Built target fastconv make -f test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build.make test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/fasterq-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/fasterq-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/DependInfo.cmake "--color=" Build-fasterq-dump make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build.make test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Built target Build-fasterq-dump make -f test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build.make test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sam-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/DependInfo.cmake "--color=" Build-sam-dump [ 86%] Linking CXX executable ../../bin/gw-dumper make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build.make test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer && /usr/bin/cmake -E cmake_link_script CMakeFiles/gw-dumper.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Built target Build-sam-dump make -f test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build.make test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/DependInfo.cmake "--color=" Build-latf-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build.make test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Built target Build-latf-load make -f test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build.make test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/DependInfo.cmake "--color=" SlowTest_FastqLoader_id2name make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build.make test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build /usr/lib/aarch64-linux-gnu/libncbi-vdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Building CXX object test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -MF CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o.d -o CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/test-id2name.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/gw-dumper.dir/link.d "CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o" -o ../../bin/gw-dumper ../../ilib/libgeneral-writer.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Built target gw-dumper make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/DependInfo.cmake "--color=" Test_FastqLoader_WbFastq_dflt make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/wb-test-fastq.cpp make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/DependInfo.cmake "--color=" Test_FastqLoader_WbFastqParse make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/wb-test-fastq-parse.cpp make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/DependInfo.cmake "--color=" Test_FastqLoader_WbFastqLoader make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/test-fastq-loader.cpp [ 86%] Linking CXX executable ../../../bin/vdb-config cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-config.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/vdb-config.dir/link.d "CMakeFiles/vdb-config.dir/configure.cpp.o" "CMakeFiles/vdb-config.dir/util.cpp.o" "CMakeFiles/vdb-config.dir/vdb-config.c.o" "CMakeFiles/vdb-config.dir/interactive2.cpp.o" "CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o" -o ../../../bin/vdb-config ../../../ilib/libtui_cpp.a ../../../ilib/libtui.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-config.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-config vdb-config.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-config.3.2.1 vdb-config.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-config.3 vdb-config cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/vdb-config && /usr/bin/cmake -E copy /usr/include/ncbi-vdb/kfg/ncbi/default.kfg /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/ncbi/default.kfg make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Built target vdb-config make -f ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/DependInfo.cmake "--color=" ngs-c++ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Linking CXX static library ../../lib/libngs-c++.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -P CMakeFiles/ngs-c++.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-c++.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libngs-c++.a "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" "../ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o" ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" /usr/bin/ranlib ../../lib/libngs-c++.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && rm -f libngs-c++.a.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && mv libngs-c++.a libngs-c++.a.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libngs-c++.a.3.2.1 libngs-c++.a.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libngs-c++.a.3 libngs-c++.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libngs-c++.a libngs-c++-static.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Built target ngs-c++ make -f ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/DependInfo.cmake "--color=" ngs-c++-shared make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Linking CXX shared library ../../lib/libngs-c++.so cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-c++-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -shared -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/ngs-c++-shared.dir/link.d -Wl,-soname,libngs-c++.so.3 -o ../../lib/libngs-c++.so.3.2.1 "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" "../ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o" ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobI[ 87%] Linking CXX executable ../../../bin/vdb-sql cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/vdb-sql && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-sql.dir/link.txt --verbose=1 terator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_symlink_library ../../lib/libngs-c++.so.3.2.1 ../../lib/libngs-c++.so.3 ../../lib/libngs-c++.so make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 87%] Built target ngs-c++-shared make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/DependInfo.cmake "--color=" ncbi-ngs make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 87%] Linking CXX static library ../../lib/libncbi-ngs.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -P CMakeFiles/ncbi-ngs.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libncbi-ngs.a "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" "../ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o" ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadColle/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/vdb-sql.dir/link.d "CMakeFiles/vdb-sql.dir/vdb_shell.c.o" -o ../../../bin/vdb-sql ../../../ilib/libvdb-sqlite.a ../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f vdb-sql.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv vdb-sql vdb-sql.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-sql.3.2.1 vdb-sql.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s vdb-sql.3 vdb-sql make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 87%] Built target vdb-sql make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/DependInfo.cmake "--color=" ncbi-ngs-shared make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' ction.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" /usr/bin/ranlib ../../lib/libncbi-ngs.a make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && rm -f libncbi-ngs.a.3.2.1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && mv libncbi-ngs.a libncbi-ngs.a.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libncbi-ngs.a.3.2.1 libncbi-ngs.a.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libncbi-ngs.a.3 libncbi-ngs.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib && ln -f -s libncbi-ngs.a libncbi-ngs-static.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 87%] Linking CXX shared library ../../lib/libncbi-ngs.so cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs-shared.dir/link.txt --verbose=1 [ 87%] Built target ncbi-ngs make -f libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build.make libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/depend /usr/bin/c++ -fPIC -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -shared -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/ncbi-ngs-shared.dir/link.d -Wl,-soname,libncbi-ngs.so.3 -o ../../lib/libncbi-ngs.so.3.2.1 "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dimake[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/DependInfo.cmake "--color=" Build-gw-dumper make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build.make libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 87%] Built target Build-gw-dumper make -f tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/DependInfo.cmake "--color=" test-general-loader make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o -MF CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o.d -o CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp /usr/lib/aarch64-linux-gnu/libncbi-vdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp:32: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/../database-loader.cpp:833:90: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 833 | rc = KLoaderMeta_WriteWithVersion ( node, m_programName.c_str(), __DATE__, KAppVersion(), m_softwareName.c_str(), m_softwareVersion ); | ^~~~~~~~ r/jni_Refcount.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" "../ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o" ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" /usr/lib/aarch64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_symlink_library ../../lib/libncbi-ngs.so.3.2.1 ../../lib/libncbi-ngs.so.3 ../../lib/libncbi-ngs.so /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp:636:92: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 636 | REQUIRE_EQ ( string ( __DATE__), GetDbMetadataAttr ( m_db, "SOFTWARE/loader", "date" ) ); | ^ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 88%] Linking CXX executable ../../../test-bin/SlowTest_FastqLoader_id2name cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/SlowTest_FastqLoader_id2name.dir/link.txt --verbose=1 [ 88%] Built target ncbi-ngs-shared [ 88%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/testsource.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/testsource.cpp.o -MF CMakeFiles/test-general-loader.dir/testsource.cpp.o.d -o CMakeFiles/test-general-loader.dir/testsource.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/SlowTest_FastqLoader_id2name.dir/link.d "CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o" -o ../../../test-bin/SlowTest_FastqLoader_id2name ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target SlowTest_FastqLoader_id2name make -f tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build.make tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/DependInfo.cmake "--color=" ngs-pileup make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build.make tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 89%] Building CXX object tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ngs-pileup && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/ngs-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o -MF CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o.d -o CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ngs-pileup/ngs-pileup.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp: In constructor ‘TestSource::Buffer::Buffer(const std::string&, uint32_t, uint32_t, bool)’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp:47:13: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 8 equals destination size [-Wstringop-truncation] 47 | strncpy ( m_header . dad . signature, p_signature . c_str(), sizeof m_header . dad . signature ); | ^ [ 89%] Building CXX object tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ngs-pileup && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/ngs-pileup\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o -MF CMakeFiles/ngs-pileup.dir/main.cpp.o.d -o CMakeFiles/ngs-pileup.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ngs-pileup/main.cpp make -f tools/external/ref-variation/CMakeFiles/ref-variation.dir/build.make tools/external/ref-variation/CMakeFiles/ref-variation.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation/CMakeFiles/ref-variation.dir/DependInfo.cmake "--color=" ref-variation make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/ref-variation/CMakeFiles/ref-variation.dir/build.make tools/external/ref-variation/CMakeFiles/ref-variation.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 89%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/common.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/ref-variation\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/common.cpp.o -MF CMakeFiles/ref-variation.dir/common.cpp.o.d -o CMakeFiles/ref-variation.dir/common.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/common.cpp [ 90%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/ref-variation\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o -MF CMakeFiles/ref-variation.dir/helper.cpp.o.d -o CMakeFiles/ref-variation.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/helper.cpp [ 90%] Linking CXX executable ../../../bin/ngs-pileup cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ngs-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-pileup.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/ngs-pileup.dir/link.d "CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o" "CMakeFiles/ngs-pileup.dir/main.cpp.o" -o ../../../bin/ngs-pileup ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a ../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f ngs-pileup.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv ngs-pileup ngs-pileup.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ngs-pileup.3.2.1 ngs-pileup.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ngs-pileup.3 ngs-pileup make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 90%] Built target ngs-pileup make -f tools/external/ref-variation/CMakeFiles/var-expand.dir/build.make tools/external/ref-variation/CMakeFiles/var-expand.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation/CMakeFiles/var-expand.dir/DependInfo.cmake "--color=" var-expand make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/ref-variation/CMakeFiles/var-expand.dir/build.make tools/external/ref-variation/CMakeFiles/var-expand.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 90%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/var-expand\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o -MF CMakeFiles/var-expand.dir/common.cpp.o.d -o CMakeFiles/var-expand.dir/common.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/common.cpp [ 90%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastqLoader cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/link.txt --verbose=1 [ 90%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/helper.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/var-expand\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/helper.cpp.o -MF CMakeFiles/var-expand.dir/helper.cpp.o.d -o CMakeFiles/var-expand.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/helper.cpp [ 90%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/ref-variation\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o -MF CMakeFiles/ref-variation.dir/ref-variation.cpp.o.d -o CMakeFiles/ref-variation.dir/ref-variation.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/ref-variation.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/link.d "CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastqLoader ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 90%] Built target Test_FastqLoader_WbFastqLoader [ 90%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/var-expand\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o -MF CMakeFiles/var-expand.dir/var-expand.cpp.o.d -o CMakeFiles/var-expand.dir/var-expand.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/var-expand.cpp [ 90%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastqParse cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastqParse.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_FastqLoader_WbFastqParse.dir/link.d "CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastqParse ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 90%] Built target Test_FastqLoader_WbFastqParse make -f tools/external/sra-search/CMakeFiles/sra-search.dir/build.make tools/external/sra-search/CMakeFiles/sra-search.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/CMakeFiles/sra-search.dir/DependInfo.cmake "--color=" sra-search make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/sra-search/CMakeFiles/sra-search.dir/build.make tools/external/sra-search/CMakeFiles/sra-search.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 90%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o -MF CMakeFiles/sra-search.dir/main.cpp.o.d -o CMakeFiles/sra-search.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/main.cpp make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/DependInfo.cmake "--color=" Test_SraSearch make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 90%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o -MF CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/test-sra-search.cpp [ 90%] Linking CXX executable ../../../bin/var-expand cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/cmake -E cmake_link_script CMakeFiles/var-expand.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/var-expand.dir/link.d "CMakeFiles/var-expand.dir/common.cpp.o" "CMakeFiles/var-expand.dir/helper.cpp.o" "CMakeFiles/var-expand.dir/var-expand.cpp.o" -o ../../../bin/var-expand ../../../ilib/libtk-version.a -lkapp ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f var-expand.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv var-expand var-expand.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s var-expand.3.2.1 var-expand.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s var-expand.3 var-expand make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 90%] Built target var-expand [ 90%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/vdb-search.cpp [ 91%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o -MF CMakeFiles/sra-search.dir/searchblock.cpp.o.d -o CMakeFiles/sra-search.dir/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp [ 91%] Linking CXX executable ../../../bin/ref-variation cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/ref-variation && /usr/bin/cmake -E cmake_link_script CMakeFiles/ref-variation.dir/link.txt --verbose=1 [ 91%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -MF CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/ref-variation.dir/link.d "CMakeFiles/ref-variation.dir/common.cpp.o" "CMakeFiles/ref-variation.dir/helper.cpp.o" "CMakeFiles/ref-variation.dir/ref-variation.cpp.o" -o ../../../bin/ref-variation ../../../ilib/libtk-version.a -lkapp ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f ref-variation.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv ref-variation ref-variation.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ref-variation.3.2.1 ref-variation.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s ref-variation.3 ref-variation make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 91%] Built target ref-variation [ 91%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -MF CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/blobmatchiterator.cpp [ 91%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -MF CMakeFiles/sra-search.dir/referencematchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/referencematchiterator.cpp [ 91%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"tools/sra-search\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o -MF CMakeFiles/sra-search.dir/vdb-search.cpp.o.d -o CMakeFiles/sra-search.dir/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/vdb-search.cpp [ 91%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/DependInfo.cmake "--color=" Test_SraSearchSlow make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 91%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/test-sra-search-slow.cpp [ 91%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/vdb-search.cpp [ 91%] Linking CXX executable ../../../bin/sra-search cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-search.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/sra-search.dir/link.d "CMakeFiles/sra-search.dir/main.cpp.o" "CMakeFiles/sra-search.dir/searchblock.cpp.o" "CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o" "CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o" "CMakeFiles/sra-search.dir/referencematchiterator.cpp.o" "CMakeFiles/sra-search.dir/vdb-search.cpp.o" -o ../../../bin/sra-search ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libtk-version.a -Wl,-Bstatic -lkapp -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sra-search.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sra-search sra-search.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-search.3.2.1 sra-search.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sra-search.3 sra-search make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 91%] Built target sra-search [ 91%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/blobmatchiterator.cpp [ 91%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/DependInfo.cmake "--color=" Test_SraSearch_SearchBlock make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 91%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o -MF CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o.d -o CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/test-searchblock.cpp [ 91%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp [ 91%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/referencematchiterator.cpp make -f tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build.make tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/DependInfo.cmake "--color=" Build-sra-search make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build.make tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 91%] Built target Build-sra-search [ 92%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -MF CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o.d -o CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp [ 92%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/blobmatchiterator.cpp [ 93%] Linking CXX executable ../../../../test-bin/Test_SraSearch cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSearch.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_SraSearch.dir/link.d "CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o" "CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o" CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o -o ../../../../test-bin/Test_SraSearch ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a ../../../../ilib/libksrch.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 93%] Built target Test_SraSearch make -f tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/DependInfo.cmake "--color=" compute-coverage-ngs make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 93%] Linking CXX executable ../../../../test-bin/Test_SraSearch_SearchBlock cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSearch_SearchBlock.dir/link.txt --verbose=1 [ 93%] Building CXX object tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o -MF CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o.d -o CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/compute-coverage/compute-coverage-ngs.cpp make -f tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/build.make tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/dump_ref_fasta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/DependInfo.cmake "--color=" dump-ref-fasta make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/build.make tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 93%] Building CXX object tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/dump_ref_fasta && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o -MF CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o.d -o CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/DumpReferenceFASTA.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_SraSearch_SearchBlock.dir/link.d "CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o" CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -o ../../../../test-bin/Test_SraSearch_SearchBlock ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lncbi-vdb ../../../../ilib/libksrch.a /usr/lib/aarch64-linux-gnu/libkapp.a -lncbi-vdb make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 93%] Built target Test_SraSearch_SearchBlock [ 93%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/DumpReferenceFASTA.cpp: In static member function ‘static void DumpReferenceFASTA::process(const ngs::Reference&, const Range&)’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/DumpReferenceFASTA.cpp:184:30: warning: catching polymorphic type ‘class ngs::ErrorMsg’ by value [-Wcatch-value=] 184 | catch ( ErrorMsg x ) | ^ [ 94%] Linking CXX executable ../../../bin/compute-coverage-ngs cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/compute-coverage && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute-coverage-ngs.dir/link.txt --verbose=1 [ 94%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/referencematchiterator.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/compute-coverage-ngs.dir/link.d "CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o" -o ../../../bin/compute-coverage-ngs ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f compute-coverage-ngs.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv compute-coverage-ngs compute-coverage-ngs.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s compute-coverage-ngs.3.2.1 compute-coverage-ngs.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s compute-coverage-ngs.3 compute-coverage-ngs make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 94%] Built target compute-coverage-ngs make -f tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/build.make tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/pileup-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/DependInfo.cmake "--color=" pileup-stats make -f test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/build.make test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/testy-the-bear /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/testy-the-bear /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/DependInfo.cmake "--color=" testy-the-bear make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/build.make tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/build.make test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 94%] Building CXX object tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o -MF CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o.d -o CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/pileup-stats/pileup-stats.cpp [ 95%] Building CXX object test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/testy-the-bear && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/ngs/testy-the-bear\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o -MF CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o.d -o CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/testy-the-bear/testy-the-bear.cpp [ 95%] Linking CXX executable ../../../bin/dump-ref-fasta cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/internal/dump_ref_fasta && /usr/bin/cmake -E cmake_link_script CMakeFiles/dump-ref-fasta.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/dump-ref-fasta.dir/link.d "CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o" -o ../../../bin/dump-ref-fasta ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f dump-ref-fasta.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv dump-ref-fasta dump-ref-fasta.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s dump-ref-fasta.3.2.1 dump-ref-fasta.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s dump-ref-fasta.3 dump-ref-fasta make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Built target dump-ref-fasta make -f test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/DependInfo.cmake "--color=" Test_Ngs_Pileup make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Building CXX object test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs-pileup && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o -MF CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o.d -o CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs-pileup/test-ngs-pileup.cpp [ 95%] Linking CXX executable ../../../../test-bin/testy-the-bear cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs/testy-the-bear && /usr/bin/cmake -E cmake_link_script CMakeFiles/testy-the-bear.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/testy-the-bear.dir/link.d "CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o" -o ../../../../test-bin/testy-the-bear /usr/lib/aarch64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a ../../../../lib/libncbi-ngs-c++.a ../../../../lib/libncbi-ngs.a ../../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Built target testy-the-bear make -f test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/DependInfo.cmake "--color=" Build-ngs-pileup make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Built target Build-ngs-pileup make -f test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build.make test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/DependInfo.cmake "--color=" Build-vdb-config make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build.make test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Built target Build-vdb-config make -f test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build.make test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/DependInfo.cmake "--color=" SlowTest_Align_estimator make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build.make test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Building CXX object test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -D__mod__=\"test/internal/align\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/../ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -MF CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o.d -o CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align/pileup_estimator.cpp [ 95%] Linking CXX executable ../../../../test-bin/Test_SraSearchSlow cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSearchSlow.dir/link.txt --verbose=1 [ 95%] Linking CXX executable ../../../bin/pileup-stats cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pileup-stats.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_SraSearchSlow.dir/link.d "CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o" "CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o" CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -o ../../../../test-bin/Test_SraSearchSlow ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a ../../../../ilib/libksrch.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Built target Test_SraSearchSlow make -f ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/DependInfo.cmake "--color=" FragTest make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/pileup-stats.dir/link.d "CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o" -o ../../../bin/pileup-stats ../../../ilib/libgeneral-writer.a ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f pileup-stats.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv pileup-stats pileup-stats.3.2.1 [ 95%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/FragTest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pileup-stats.3.2.1 pileup-stats.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/FragTest.cpp.o -MF CMakeFiles/FragTest.dir/FragTest.cpp.o.d -o CMakeFiles/FragTest.dir/FragTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/FragTest.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s pileup-stats.3 pileup-stats make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Built target pileup-stats make -f ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/DependInfo.cmake "--color=" AlignTest make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/AlignTest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/AlignTest.cpp.o -MF CMakeFiles/AlignTest.dir/AlignTest.cpp.o.d -o CMakeFiles/AlignTest.dir/AlignTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/AlignTest.cpp [ 95%] Linking CXX executable ../../../test-bin/FragTest cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragTest.dir/link.txt --verbose=1 /usr/lib/aarch64-linux-gnu/libncbi-vdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/FragTest.dir/link.d CMakeFiles/FragTest.dir/FragTest.cpp.o -o ../../../test-bin/FragTest ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Linking CXX executable ../../../test-bin/AlignTest cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignTest.dir/link.txt --verbose=1 [ 95%] Built target FragTest make -f ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/DependInfo.cmake "--color=" AlignSliceTest [ 95%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastq_dflt cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -MF CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o.d -o CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/AlignSliceTest.cpp /usr/lib/aarch64-linux-gnu/libncbi-vdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/AlignTest.dir/link.d CMakeFiles/AlignTest.dir/AlignTest.cpp.o -o ../../../test-bin/AlignTest ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Built target AlignTest make -f ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/DependInfo.cmake "--color=" PileupTest make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/PileupTest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/PileupTest.cpp.o -MF CMakeFiles/PileupTest.dir/PileupTest.cpp.o.d -o CMakeFiles/PileupTest.dir/PileupTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/PileupTest.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/link.d "CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastq_dflt ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Built target Test_FastqLoader_WbFastq_dflt make -f ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/DependInfo.cmake "--color=" RefTest make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/RefTest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/RefTest.cpp.o -MF CMakeFiles/RefTest.dir/RefTest.cpp.o.d -o CMakeFiles/RefTest.dir/RefTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/RefTest.cpp [ 95%] Linking CXX executable ../../../test-bin/AlignSliceTest cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignSliceTest.dir/link.txt --verbose=1 /usr/lib/aarch64-linux-gnu/libncbi-vdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/AlignSliceTest.dir/link.d CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -o ../../../test-bin/AlignSliceTest ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Built target AlignSliceTest make -f ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/DependInfo.cmake "--color=" DumpReferenceFASTA make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/build [ 95%] Linking CXX executable ../../../test-bin/RefTest make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/RefTest.dir/link.txt --verbose=1 [ 95%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -MF CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o.d -o CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/DumpReferenceFASTA.cpp /usr/lib/aarch64-linux-gnu/libncbi-vdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. [ 96%] Linking CXX executable ../../../test-bin/PileupTest cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/PileupTest.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/RefTest.dir/link.d CMakeFiles/RefTest.dir/RefTest.cpp.o -o ../../../test-bin/RefTest ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Built target RefTest make -f libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/DependInfo.cmake "--color=" test-ngs /usr/lib/aarch64-linux-gnu/libncbi-vdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/ngstest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/ngstest.cpp.o -MF CMakeFiles/test-ngs.dir/ngstest.cpp.o.d -o CMakeFiles/test-ngs.dir/ngstest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/PileupTest.dir/link.d CMakeFiles/PileupTest.dir/PileupTest.cpp.o -o ../../../test-bin/PileupTest ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Built target PileupTest make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/DependInfo.cmake "--color=" test-ngs_sra make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o -MF CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o.d -o CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_sra.cpp [ 96%] Linking CXX executable ../../../test-bin/Test_Ngs_Pileup cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/ngs-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Ngs_Pileup.dir/link.txt --verbose=1 [ 96%] Linking CXX executable ../../../test-bin/DumpReferenceFASTA cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/DumpReferenceFASTA.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/Test_Ngs_Pileup.dir/link.d "CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o" -o ../../../test-bin/Test_Ngs_Pileup ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a ../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Built target Test_Ngs_Pileup make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/DependInfo.cmake "--color=" test-ngs_sradb /usr/lib/aarch64-linux-gnu/libncbi-vdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o -MF CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o.d -o CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_sradb.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/DumpReferenceFASTA.dir/link.d CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -o ../../../test-bin/DumpReferenceFASTA ../../../lib/libncbi-ngs.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Built target DumpReferenceFASTA make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/DependInfo.cmake "--color=" test-ngs_csra1 [ 96%] Linking CXX executable ../../../test-bin/test-ngs cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o -MF CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o.d -o CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-ngs.dir/link.d "CMakeFiles/test-ngs.dir/ngstest.cpp.o" -o ../../../test-bin/test-ngs -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Built target test-ngs make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/DependInfo.cmake "--color=" test-ngs_csra1_readcollection make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o -MF CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o.d -o CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_readcollection.cpp [ 96%] Linking CXX executable ../../../test-bin/SlowTest_Align_estimator cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/internal/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/SlowTest_Align_estimator.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/SlowTest_Align_estimator.dir/link.d CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -o ../../../test-bin/SlowTest_Align_estimator ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libngs.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Built target SlowTest_Align_estimator make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/DependInfo.cmake "--color=" test-ngs_csra1_refwin [ 96%] Linking CXX executable ../../../../test-bin/test-general-loader cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-general-loader.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o -MF CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o.d -o CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-general-loader.dir/link.d "CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o" "CMakeFiles/test-general-loader.dir/testsource.cpp.o" -o ../../../../test-bin/test-general-loader ../../../../ilib/libgeneral-writer.a -lkapp -lktst ../../../../ilib/libloader.a /usr/lib/aarch64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Built target test-general-loader make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/DependInfo.cmake "--color=" test-ngs_csra1_pileup make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o -MF CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o.d -o CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_pileup.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function ‘void CSRA1_NGS_ReferenceWindow_Slice_Filtered::Instance::test_method()’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:591:196: note: ‘#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.’ 591 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) | ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function ‘void CSRA1_NGS_ReferenceGetFilteredAlignmentSlice_Wraparound::Instance::test_method()’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:669:196: note: ‘#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.’ 669 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) | ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function ‘void CSRA1_NGS_ReferenceGetFilteredAlignmentSlice_Wraparound_StartInWindow::Instance::test_method()’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:696:196: note: ‘#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.’ 696 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) | ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function ‘void CSRA1_NGS_ReferenceGetFilteredAlignmentSlice_NoWraparound::Instance::test_method()’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:719:196: note: ‘#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.’ 719 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) | ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function ‘void CSRA1_NGS_ReferenceGetFilteredAlignmentSlice_NoWraparound_StartInWindow::Instance::test_method()’: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:740:196: note: ‘#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.’ 740 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) | ^ [ 96%] Linking CXX executable ../../../bin/sam-analyze cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-analyze.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/sam-analyze.dir/link.d "CMakeFiles/sam-analyze.dir/main.cpp.o" "CMakeFiles/sam-analyze.dir/sqlite3.c.o" -o ../../../bin/sam-analyze /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Built target sam-analyze make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/DependInfo.cmake "--color=" test-ngs_reference make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o -MF CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o.d -o CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_reference.cpp [ 96%] Linking CXX executable ../../../test-bin/test-ngs_csra1_pileup cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_pileup.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-ngs_csra1_pileup.dir/link.d "CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o" -o ../../../test-bin/test-ngs_csra1_pileup -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Built target test-ngs_csra1_pileup make -f libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/DependInfo.cmake "--color=" test-fragmentblob make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o -MF CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o.d -o CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_fragmentblob.cpp [ 96%] Linking CXX executable ../../../test-bin/test-ngs_csra1_refwin cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_refwin.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-ngs_csra1_refwin.dir/link.d "CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o" -o ../../../test-bin/test-ngs_csra1_refwin -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Built target test-ngs_csra1_refwin make -f libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/DependInfo.cmake "--color=" test-referenceblob make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 97%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o -MF CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o.d -o CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_referenceblob.cpp [ 98%] Linking CXX executable ../../../test-bin/test-ngs_csra1_readcollection cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_readcollection.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-ngs_csra1_readcollection.dir/link.d "CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o" -o ../../../test-bin/test-ngs_csra1_readcollection -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target test-ngs_csra1_readcollection make -f libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/DependInfo.cmake "--color=" test-byteblob make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 98%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o -MF CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o.d -o CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_byteblob.cpp [ 98%] Linking CXX executable ../../../test-bin/test-ngs_sradb cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sradb.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-ngs_sradb.dir/link.d "CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o" -o ../../../test-bin/test-ngs_sradb -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target test-ngs_sradb make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/DependInfo.cmake "--color=" test-ngs_sra_c++ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o -MF CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o.d -o CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/SRAtest.cpp [ 99%] Linking CXX executable ../../../test-bin/test-ngs_sra cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sra.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-ngs_sra.dir/link.d "CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o" -o ../../../test-bin/test-ngs_sra -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test-ngs_sra make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/DependInfo.cmake "--color=" test-ngs_sradb_c++ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o -MF CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o.d -o CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/SRADBtest.cpp [ 99%] Linking CXX executable ../../../test-bin/test-fragmentblob cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fragmentblob.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-fragmentblob.dir/link.d "CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o" -o ../../../test-bin/test-fragmentblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test-fragmentblob make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/DependInfo.cmake "--color=" test-ngs_csra1_c++ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o -MF CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o.d -o CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/CSRA1test.cpp [ 99%] Linking CXX executable ../../../test-bin/test-ngs_csra1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-ngs_csra1.dir/link.d "CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o" -o ../../../test-bin/test-ngs_csra1 -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test-ngs_csra1 make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/DependInfo.cmake "--color=" test-ngs_csra1pileup++ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o -MF CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o.d -o CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/CSRA1PileupTest.cpp [ 99%] Linking CXX executable ../../../test-bin/test-ngs_reference cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_reference.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-ngs_reference.dir/link.d "CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o" -o ../../../test-bin/test-ngs_reference -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test-ngs_reference make -f libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/DependInfo.cmake "--color=" test-ngs-vdb make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__arm64__ -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__float128=_Float128 -D__mod__=\"NGS_TEST\" -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o -MF CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o.d -o CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/test-ngs-vdb.cpp [ 99%] Linking CXX executable ../../../test-bin/test-byteblob cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-byteblob.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-byteblob.dir/link.d "CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o" -o ../../../test-bin/test-byteblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test-byteblob [ 99%] Linking CXX executable ../../../test-bin/test-referenceblob cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-referenceblob.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-referenceblob.dir/link.d "CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o" -o ../../../test-bin/test-referenceblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test-referenceblob [ 99%] Linking CXX executable ../../../test-bin/test-ngs_csra1pileup++ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1pileup++.dir/link.txt --verbose=1 [ 99%] Linking CXX executable ../../../test-bin/test-ngs_sra_c++ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sra_c++.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-ngs_csra1pileup++.dir/link.d "CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o" -o ../../../test-bin/test-ngs_csra1pileup++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test-ngs_csra1pileup++ /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-ngs_sra_c++.dir/link.d "CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o" -o ../../../test-bin/test-ngs_sra_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test-ngs_sra_c++ [ 99%] Linking CXX executable ../../../test-bin/test-ngs-vdb cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs-vdb.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-ngs-vdb.dir/link.d "CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o" -o ../../../test-bin/test-ngs-vdb ../../../ilib/libtk-version.a ../../../ilib/libngs-vdb.a -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test-ngs-vdb [ 99%] Linking CXX executable ../../../test-bin/test-ngs_sradb_c++ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sradb_c++.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-ngs_sradb_c++.dir/link.d "CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o" -o ../../../test-bin/test-ngs_sradb_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test-ngs_sradb_c++ [ 99%] Linking CXX executable ../../../test-bin/test-ngs_csra1_c++ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_c++.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-ngs_csra1_c++.dir/link.d "CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o" -o ../../../test-bin/test-ngs_csra1_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test-ngs_csra1_c++ [ 99%] Linking CXX executable ../../../bin/sharq cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/loaders/sharq && /usr/bin/cmake -E cmake_link_script CMakeFiles/sharq.dir/link.txt --verbose=1 /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libabsl_string_view.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libncbi-vdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/sharq.dir/link.d CMakeFiles/sharq.dir/fastq_parse.cpp.o -o ../../../bin/sharq -lstdc++fs /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lre2 -labsl_string_view /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && rm -f sharq.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && mv sharq sharq.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sharq.3.2.1 sharq.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin && ln -f -s sharq.3 sharq make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target sharq make -f test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/build.make test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/depend make -f test/loaders/sharq/CMakeFiles/test-sharq-parser.dir/build.make test/loaders/sharq/CMakeFiles/test-sharq-parser.dir/depend make -f test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/build.make test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/DependInfo.cmake "--color=" test-sharq-reader make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq/CMakeFiles/test-sharq-parser.dir/DependInfo.cmake "--color=" test-sharq-parser make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/DependInfo.cmake "--color=" test-sharq-writer make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/sharq/CMakeFiles/test-sharq-parser.dir/build.make test/loaders/sharq/CMakeFiles/test-sharq-parser.dir/build make -f test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/build.make test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make -f test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/build.make test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Building CXX object test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o [ 99%] Building CXX object test/loaders/sharq/CMakeFiles/test-sharq-parser.dir/test-sharq-parser.cpp.o [ 99%] Building CXX object test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/include -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/../../../tools/loaders/sharq -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o -MF CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o.d -o CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-sharq-reader.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/include -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/../../../tools/loaders/sharq -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-sharq-parser.dir/test-sharq-parser.cpp.o -MF CMakeFiles/test-sharq-parser.dir/test-sharq-parser.cpp.o.d -o CMakeFiles/test-sharq-parser.dir/test-sharq-parser.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-sharq-parser.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DBMNEONOPT -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__arm64__ -D__float128=_Float128 -Darm64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/arm64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/include -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/../../../tools/loaders/sharq -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o -MF CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o.d -o CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-sharq-writer.cpp [100%] Linking CXX executable ../../../test-bin/test-sharq-writer cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-sharq-writer.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-sharq-writer.dir/link.d "CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o" -o ../../../test-bin/test-sharq-writer /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [100%] Built target test-sharq-writer [100%] Linking CXX executable ../../../test-bin/test-sharq-parser cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-sharq-parser.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-sharq-parser.dir/link.d "CMakeFiles/test-sharq-parser.dir/test-sharq-parser.cpp.o" -o ../../../test-bin/test-sharq-parser -lstdc++fs /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libbz2.so -lre2 -labsl_string_view make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [100%] Built target test-sharq-parser [100%] Linking CXX executable ../../../test-bin/test-sharq-reader cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/loaders/sharq && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-sharq-reader.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -mbranch-protection=standard -Wl,--dependency-file=CMakeFiles/test-sharq-reader.dir/link.d "CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o" -o ../../../test-bin/test-sharq-reader -lstdc++fs /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/aarch64-linux-gnu/libktst.a /usr/lib/aarch64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/aarch64-linux-gnu/libbz2.so -lre2 -labsl_string_view make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' [100%] Built target test-sharq-reader make[2]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' jh_build -a -O--buildsystem=cmake debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' cd obj-aarch64-linux-gnu && \ ctest --force-new-ctest-process --verbose -j1 -LE online UpdateCTestConfiguration from :/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 9 Start 9: Test_NGS_Python_install 9: Test command: /usr/bin/python3 "/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-python/setup.py" "-q" "install" "--user" 9: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-python 9: Environment variables: 9: PYTHONUSERBASE=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/tmp/python 9: Test timeout computed to be: 1500 9: /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 9: !! 9: 9: ******************************************************************************** 9: Please avoid running ``setup.py`` directly. 9: Instead, use pypa/build, pypa/installer or other 9: standards-based tools. 9: 9: See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 9: ******************************************************************************** 9: 9: !! 9: self.initialize_options() 9: /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: EasyInstallDeprecationWarning: easy_install command is deprecated. 9: !! 9: 9: ******************************************************************************** 9: Please avoid running ``setup.py`` and ``easy_install``. 9: Instead, use pypa/build, pypa/installer or other 9: standards-based tools. 9: 9: See https://github.com/pypa/setuptools/issues/917 for details. 9: ******************************************************************************** 9: 9: !! 9: self.initialize_options() 9: zip_safe flag not set; analyzing archive contents... 1/426 Test #9: Test_NGS_Python_install ................................ Passed 0.35 sec test 15 Start 15: Ngs_MakeDB 15: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/ngs-makedb 15: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/data 15: Test timeout computed to be: 1500 15: Running 1 test case... 15: SparseFragmentBlobs (0 s) 15: 15: *** No errors detected (0 s total) 2/426 Test #15: Ngs_MakeDB ............................................. Passed 0.09 sec test 16 Start 16: Test_Ngs 16: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/test-ngs 16: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test 16: Test timeout computed to be: 1500 16: 16: *** No errors detected (0 s total) 3/426 Test #16: Test_Ngs ............................................... Passed 0.01 sec test 32 Start 32: Test_GeneralWriter_RoundTrip 32: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/test-general-writer && /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/gw-dumper -v ./actual/test-general-writer.gw | grep --text -v timestamp | grep --text -v pid >./actual/test-general-writer.stdout && diff ./actual/test-general-writer.stdout ./expected/test-general-writer.stdout" 32: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test 32: Test timeout computed to be: 1500 32: CreateGw Success 32: --------------------------------- 32: addTable Success 32: --------------------------------- 32: addColumn Success 32: --------------------------------- 32: dbAddDatabase Success 32: --------------------------------- 32: dbAddTable Success 32: --------------------------------- 32: write Success 32: --------------------------------- 32: setDBMetadataNode Success 32: --------------------------------- 32: setTblMetadataNode Success 32: --------------------------------- 32: setColMetadataNode Success 32: --------------------------------- 32: setProgMsg Success 32: --------------------------------- 32: Attempting add table after endStream 32: state violation adding table 32: addTable correctly failed 32: endStream Success 32: --------------------------------- 4/426 Test #32: Test_GeneralWriter_RoundTrip ........................... Passed 0.01 sec test 33 Start 33: GeneralLoaderWhiteBox 33: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/test-general-loader 33: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 33: Test timeout computed to be: 1500 33: Unpacked protocol: Running 65 test cases... 33: EmptyInput (0 s) 33: ShortInput (0 s) 33: BadSignature (0 s) 33: BadEndianness (0 s) 33: ReverseEndianness (0 s) 33: LaterVersion (0 s) 33: BadSchemaFileName (0 s) 33: BadSchemaFileName_Long (0 s) 33: BadSchemaName (0 s) 33: BadSchemaName_Long (0 s) 33: BadTableName (0 s) 33: BadTableName_Long (0 s) 33: DuplicateTableId (0 s) 33: BadColumnName (0 s) 33: BadTableId (0 s) 33: DuplicateColumnName (0 s) 33: DuplicateColumnId (0 s) 33: NoOpenStreamEvent (0 s) 33: NoCloseStreamEvent (0 s) 33: NoColumns (0 s) 33: SoftwareName (0 s) 33: SoftwareName_BadVersion (0 s) 33: DBAddDatabase (0 s) 33: DBAddSubDatabase (0 s) 33: DBAddTable (0 s) 33: DBAddTableToSubDb (0 s) 33: DBMetadataNode (0 s) 33: DBMetadataNodeAttr (0 s) 33: SubDBMetadataNode (0 s) 33: TblMetadataNode (0 s) 33: TblMetadataNodeAttr (0 s) 33: ColMetadataNode (0 s) 33: ColMetadataNodeAttr (0 s) 33: NoData (0 s) 33: Chunk_BadColumnId (0 s) 33: WriteNoCommit (0 s) 33: CommitBadTableId (0 s) 33: OneColumnOneCellOneChunk (0 s) 33: OneColumnOneCellOneChunk_Long (0 s) 33: OneColumnOneCellManyChunks (0 s) 33: IntegerCompression_MinimumCompression (0 s) 33: IntegerCompression_MaximumCompression (0 s) 33: IntegerCompression_MultipleValues (0 s) 33: OneColumnDefaultNoWrite (0 s) 33: OneColumnDefaultNoWrite_Long (0 s) 33: MoveAhead (0 s) 33: OneColumnDefaultOverwite (0 s) 33: OneColumnChangeDefault (0 s) 33: OneColumnDataAndDefaultsMixed (0 s) 33: TwoColumnsFullRow (0 s) 33: TwoColumnsIncompleteRow (0 s) 33: TwoColumnsPartialRowWithDefaults (0 s) 33: TwoColumnsPartialRowWithDefaultsAndOverride (0 s) 33: EmptyDefault_String (0 s) 33: EmptyDefault_Int (0 s) 33: MultipleTables_Multiple_Columns_MultipleRows (0 s) 33: AdditionalSchemaIncludePaths_Single (0 s) 33: AdditionalSchemaIncludePaths_Multiple (0 s) 33: AdditionalSchemaFiles_Single (0 s) 33: AdditionalSchemaFiles_Multiple (0 s) 33: ErrorMessage (0 s) 33: ErrorMessage_Long (0 s) 33: LogMessage (0 s) 33: ProgressMessage (0 s) 33: TargetOverride (0 s) 33: 33: *** No errors detected (0 s total) 33: Packed protocol: Running 65 test cases... 33: EmptyInput (0 s) 33: ShortInput (0 s) 33: BadSignature (0 s) 33: BadEndianness (0 s) 33: ReverseEndianness (0 s) 33: LaterVersion (0 s) 33: BadSchemaFileName (0 s) 33: BadSchemaFileName_Long (0 s) 33: BadSchemaName (0 s) 33: BadSchemaName_Long (0 s) 33: BadTableName (0 s) 33: BadTableName_Long (0 s) 33: DuplicateTableId (0 s) 33: BadColumnName (0 s) 33: BadTableId (0 s) 33: DuplicateColumnName (0 s) 33: DuplicateColumnId (0 s) 33: NoOpenStreamEvent (0 s) 33: NoCloseStreamEvent (0 s) 33: NoColumns (0 s) 33: SoftwareName (0 s) 33: SoftwareName_BadVersion (0 s) 33: DBAddDatabase (0 s) 33: DBAddSubDatabase (0 s) 33: DBAddTable (0 s) 33: DBAddTableToSubDb (0 s) 33: DBMetadataNode (0 s) 33: DBMetadataNodeAttr (0 s) 33: SubDBMetadataNode (0 s) 33: TblMetadataNode (0 s) 33: TblMetadataNodeAttr (0 s) 33: ColMetadataNode (0 s) 33: ColMetadataNodeAttr (0 s) 33: NoData (0 s) 33: Chunk_BadColumnId (0 s) 33: WriteNoCommit (0 s) 33: CommitBadTableId (0 s) 33: OneColumnOneCellOneChunk (0 s) 33: OneColumnOneCellOneChunk_Long (0 s) 33: OneColumnOneCellManyChunks (0 s) 33: IntegerCompression_MinimumCompression (0 s) 33: IntegerCompression_MaximumCompression (0 s) 33: IntegerCompression_MultipleValues (0 s) 33: OneColumnDefaultNoWrite (0 s) 33: OneColumnDefaultNoWrite_Long (0 s) 33: MoveAhead (0 s) 33: OneColumnDefaultOverwite (0 s) 33: OneColumnChangeDefault (0 s) 33: OneColumnDataAndDefaultsMixed (0 s) 33: TwoColumnsFullRow (0 s) 33: TwoColumnsIncompleteRow (0 s) 33: TwoColumnsPartialRowWithDefaults (0 s) 33: TwoColumnsPartialRowWithDefaultsAndOverride (0 s) 33: EmptyDefault_String (0 s) 33: EmptyDefault_Int (0 s) 33: MultipleTables_Multiple_Columns_MultipleRows (0 s) 33: AdditionalSchemaIncludePaths_Single (0 s) 33: AdditionalSchemaIncludePaths_Multiple (0 s) 33: AdditionalSchemaFiles_Single (0 s) 33: AdditionalSchemaFiles_Multiple (0 s) 33: ErrorMessage (0 s) 33: ErrorMessage_Long (0 s) 33: LogMessage (0 s) 33: ProgressMessage (0 s) 33: TargetOverride (0 s) 33: 33: *** No errors detected (0 s total) 5/426 Test #33: GeneralLoaderWhiteBox .................................. Passed 0.69 sec test 34 Start 34: makeinputs 34: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/makeinputs 34: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 34: Test timeout computed to be: 1500 6/426 Test #34: makeinputs ............................................. Passed 0.01 sec test 35 Start 35: GeneralLoader-1.0-Basic-Unpacked 35: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "1" "0" 35: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 35: Test timeout computed to be: 1500 35: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 1 0 35: running test case 0 35: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator 35: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 7/426 Test #35: GeneralLoader-1.0-Basic-Unpacked ....................... Passed 0.00 sec test 36 Start 36: GeneralLoader-1.1-Basic-Packed 36: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "1packed" "0" 36: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 36: Test timeout computed to be: 1500 36: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 1packed 0 36: running test case 0 36: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator 36: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 8/426 Test #36: GeneralLoader-1.1-Basic-Packed ......................... Passed 0.00 sec test 37 Start 37: GeneralLoader-1.2-TargetDbOverride 37: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "1override" "0" "--target actual/1override/db" 37: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 37: Test timeout computed to be: 1500 37: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 1override 0 --target actual/1override/db 37: running test case 0 37: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator 37: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 9/426 Test #37: GeneralLoader-1.2-TargetDbOverride ..................... Passed 0.00 sec test 38 Start 38: GeneralLoader-1.3-TargetDbOverrideShorthand 38: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "1override" "0" "-T actual/1override/db" 38: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 38: Test timeout computed to be: 1500 38: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 1override 0 -T actual/1override/db 38: running test case 0 38: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator 38: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 10/426 Test #38: GeneralLoader-1.3-TargetDbOverrideShorthand ............ Passed 0.00 sec test 39 Start 39: GeneralLoader-2.0-ErrorMessageEvent-Unpacked 39: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "2" "3" "-L=err" 39: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 39: Test timeout computed to be: 1500 39: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 2 3 -L=err 39: running test case 3 39: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator 39: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 11/426 Test #39: GeneralLoader-2.0-ErrorMessageEvent-Unpacked ........... Passed 0.00 sec test 40 Start 40: GeneralLoader-2.1-ErrorMessageEvent-Packed 40: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "2packed" "3" "-L=err" 40: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 40: Test timeout computed to be: 1500 40: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 2packed 3 -L=err 40: running test case 3 40: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator 40: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 12/426 Test #40: GeneralLoader-2.1-ErrorMessageEvent-Packed ............. Passed 0.00 sec test 41 Start 41: GeneralLoader-3.0-EmptyDefaultValues-Unpacked 41: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "3" "0" 41: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 41: Test timeout computed to be: 1500 41: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 3 0 41: running test case 0 41: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator 41: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 13/426 Test #41: GeneralLoader-3.0-EmptyDefaultValues-Unpacked .......... Passed 0.00 sec test 42 Start 42: GeneralLoader-3.1-EmptyDefaultValues-Packed 42: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "3" "0" 42: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 42: Test timeout computed to be: 1500 42: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 3 0 42: running test case 0 42: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator 42: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 14/426 Test #42: GeneralLoader-3.1-EmptyDefaultValues-Packed ............ Passed 0.00 sec test 43 Start 43: GeneralLoader-4.0-MoveAheadEvent-Unpacked 43: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "4" "0" 43: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 43: Test timeout computed to be: 1500 43: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 4 0 43: running test case 0 43: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator 43: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 15/426 Test #43: GeneralLoader-4.0-MoveAheadEvent-Unpacked .............. Passed 0.00 sec test 44 Start 44: GeneralLoader-4.1-MoveAheadEvent-Packed 44: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "4packed" "0" 44: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 44: Test timeout computed to be: 1500 44: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 4packed 0 44: running test case 0 44: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator 44: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 16/426 Test #44: GeneralLoader-4.1-MoveAheadEvent-Packed ................ Passed 0.00 sec test 45 Start 45: GeneralLoader-5.0-IntegerConversion 45: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "5packed" "0" 45: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 45: Test timeout computed to be: 1500 45: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 5packed 0 45: running test case 0 45: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin: unexpected operator 45: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 17/426 Test #45: GeneralLoader-5.0-IntegerConversion .................... Passed 0.00 sec test 46 Start 46: GeneralLoader-6.0-SoftwareName-Unpacked 46: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "6" "0" "-L=info" "SOFTWARE/formatter" 46: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 46: Test timeout computed to be: 1500 46: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 6 0 -L=info SOFTWARE/formatter 46: running test case 6 46: cat input/6.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6/load.stderr 46: Load succeeded, dumping and matching stdout 46: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db SOFTWARE/formatter 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6/dump.stderr 18/426 Test #46: GeneralLoader-6.0-SoftwareName-Unpacked ................ Passed 0.25 sec test 47 Start 47: GeneralLoader-6.1-SoftwareName-Packed 47: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "6packed" "0" "-L=info" "SOFTWARE/formatter" 47: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 47: Test timeout computed to be: 1500 47: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 6packed 0 -L=info SOFTWARE/formatter 47: running test case 6packed 47: cat input/6packed.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6packed/load.stderr 47: Load succeeded, dumping and matching stdout 47: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db SOFTWARE/formatter 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6packed/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6packed/dump.stderr 19/426 Test #47: GeneralLoader-6.1-SoftwareName-Packed .................. Passed 0.20 sec test 48 Start 48: GeneralLoader-7.0-MetadataAttrsDb-Unpacked 48: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "7" "0" "-L=info" "dbmeta" 48: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 48: Test timeout computed to be: 1500 48: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 7 0 -L=info dbmeta 48: running test case 7 48: cat input/7.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7/load.stderr 48: Load succeeded, dumping and matching stdout 48: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db dbmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7/dump.stderr 20/426 Test #48: GeneralLoader-7.0-MetadataAttrsDb-Unpacked ............. Passed 0.26 sec test 49 Start 49: GeneralLoader-7.1-MetadataAttrsDb-Packed 49: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "7packed" "0" "-L=info" "dbmeta" 49: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 49: Test timeout computed to be: 1500 49: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 7packed 0 -L=info dbmeta 49: running test case 7packed 49: cat input/7packed.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7packed/load.stderr 49: Load succeeded, dumping and matching stdout 49: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db dbmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7packed/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7packed/dump.stderr 21/426 Test #49: GeneralLoader-7.1-MetadataAttrsDb-Packed ............... Passed 0.27 sec test 50 Start 50: GeneralLoader-8.0-MetadataAttrsTbl-Unpacked 50: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "8" "0" "-L=info" "tblmeta" 50: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 50: Test timeout computed to be: 1500 50: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 8 0 -L=info tblmeta 50: running test case 8 50: cat input/8.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8/load.stderr 50: Load succeeded, dumping and matching stdout 50: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE tblmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8/dump.stderr 22/426 Test #50: GeneralLoader-8.0-MetadataAttrsTbl-Unpacked ............ Passed 0.23 sec test 51 Start 51: GeneralLoader-8.1-MetadataAttrsTbl-Packed 51: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "8packed" "0" "-L=info" "tblmeta" 51: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 51: Test timeout computed to be: 1500 51: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 8packed 0 -L=info tblmeta 51: running test case 8packed 51: cat input/8packed.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8packed/load.stderr 51: Load succeeded, dumping and matching stdout 51: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE tblmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8packed/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8packed/dump.stderr 23/426 Test #51: GeneralLoader-8.1-MetadataAttrsTbl-Packed .............. Passed 0.28 sec test 52 Start 52: GeneralLoader-9.0-MetadataAttrsCol-Unpacked 52: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE/col/PRIMARY_ALIGNMENT_IDS" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "9" "0" "-L=info" "colmeta" 52: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 52: Test timeout computed to be: 1500 52: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE/col/PRIMARY_ALIGNMENT_IDS /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 9 0 -L=info colmeta 52: running test case 9 52: cat input/9.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9/load.stderr 52: Load succeeded, dumping and matching stdout 52: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE/col/PRIMARY_ALIGNMENT_IDS colmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9/dump.stderr 24/426 Test #52: GeneralLoader-9.0-MetadataAttrsCol-Unpacked ............ Passed 0.23 sec test 53 Start 53: GeneralLoader-9.1-MetadataAttrsCol-Packed 53: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE/col/PRIMARY_ALIGNMENT_IDS" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test" "9packed" "0" "-L=info" "colmeta" 53: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 53: Test timeout computed to be: 1500 53: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE/col/PRIMARY_ALIGNMENT_IDS /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 9packed 0 -L=info colmeta 53: running test case 9packed 53: cat input/9packed.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9packed/load.stderr 53: Load succeeded, dumping and matching stdout 53: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE/col/PRIMARY_ALIGNMENT_IDS colmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9packed/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9packed/dump.stderr 25/426 Test #53: GeneralLoader-9.1-MetadataAttrsCol-Packed .............. Passed 0.28 sec test 54 Start 54: bio-end-makeinputs 54: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/bio-end-makeinputs 54: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 54: Test timeout computed to be: 1500 26/426 Test #54: bio-end-makeinputs ..................................... Passed 0.01 sec test 55 Start 55: BioEnd-Excl-1 55: Test command: /usr/bin/sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema" "bio-end" "excl-1" "0" "n" "-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" "-L=debug" 55: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 55: Test timeout computed to be: 1500 55: running test bio-end:excl-1 27/426 Test #55: BioEnd-Excl-1 .......................................... Passed 0.22 sec test 56 Start 56: BioEnd-Excl-2 56: Test command: /usr/bin/sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema" "bio-end" "excl-2" "0" "n" "-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" 56: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 56: Test timeout computed to be: 1500 56: running test bio-end:excl-2 28/426 Test #56: BioEnd-Excl-2 .......................................... Passed 0.22 sec test 57 Start 57: BioEnd-Excl-3 57: Test command: /usr/bin/sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema" "bio-end" "excl-3" "0" "n" "-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" 57: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 57: Test timeout computed to be: 1500 57: running test bio-end:excl-3 29/426 Test #57: BioEnd-Excl-3 .......................................... Passed 0.22 sec test 58 Start 58: BioEnd-Excl-4 58: Test command: /usr/bin/sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema" "bio-end" "excl-4" "0" "n" "-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" 58: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 58: Test timeout computed to be: 1500 58: running test bio-end:excl-4 30/426 Test #58: BioEnd-Excl-4 .......................................... Passed 0.22 sec test 59 Start 59: BioEnd-Incl-1 59: Test command: /usr/bin/sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema" "bio-end" "incl-1" "0" "n" "-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" 59: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 59: Test timeout computed to be: 1500 59: running test bio-end:incl-1 31/426 Test #59: BioEnd-Incl-1 .......................................... Passed 0.22 sec test 60 Start 60: IdxText-CI-1 60: Test command: /usr/bin/sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema" "bio-end" "excl-1" "0" "n" "-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" 60: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 60: Test timeout computed to be: 1500 60: running test bio-end:excl-1 32/426 Test #60: IdxText-CI-1 ........................................... Passed 0.21 sec test 61 Start 61: idx-text-makeinputs 61: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/idx-text-makeinputs 61: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 61: Test timeout computed to be: 1500 33/426 Test #61: idx-text-makeinputs .................................... Passed 0.01 sec test 62 Start 62: IdxText-ci-1 62: Test command: /usr/bin/sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema" "idx-text" "ci-1" "0" "y" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/idx-text-checklookup" "-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" 62: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 62: Test timeout computed to be: 1500 62: running test idx-text:ci-1 34/426 Test #62: IdxText-ci-1 ........................................... Passed 0.27 sec test 63 Start 63: IdxText-ci-2 63: Test command: /usr/bin/sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema" "idx-text" "ci-2" "0" "y" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/idx-text-checklookup" "-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" 63: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 63: Test timeout computed to be: 1500 63: running test idx-text:ci-2 35/426 Test #63: IdxText-ci-2 ........................................... Passed 0.25 sec test 64 Start 64: IdxText-ci-3 64: Test command: /usr/bin/sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema" "idx-text" "ci-3" "0" "y" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/idx-text-checklookup" "-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" 64: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 64: Test timeout computed to be: 1500 64: running test idx-text:ci-3 36/426 Test #64: IdxText-ci-3 ........................................... Passed 0.22 sec test 65 Start 65: IdxText-ci-4 65: Test command: /usr/bin/sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema" "idx-text" "ci-4" "0" "y" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/idx-text-checklookup" "-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" 65: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 65: Test timeout computed to be: 1500 65: running test idx-text:ci-4 37/426 Test #65: IdxText-ci-4 ........................................... Passed 0.26 sec test 66 Start 66: IdxText-ci-5 66: Test command: /usr/bin/sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema" "idx-text" "ci-5" "0" "n" "-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" 66: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 66: Test timeout computed to be: 1500 66: running test idx-text:ci-5 38/426 Test #66: IdxText-ci-5 ........................................... Passed 0.19 sec test 67 Start 67: IdxText-cs-1 67: Test command: /usr/bin/sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema" "idx-text" "cs-1" "0" "y" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/idx-text-checklookup" "-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" 67: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 67: Test timeout computed to be: 1500 67: running test idx-text:cs-1 39/426 Test #67: IdxText-cs-1 ........................................... Passed 0.27 sec test 68 Start 68: IdxText-cs-2 68: Test command: /usr/bin/sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema" "idx-text" "cs-2" "0" "y" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/idx-text-checklookup" "-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" 68: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 68: Test timeout computed to be: 1500 68: running test idx-text:cs-2 40/426 Test #68: IdxText-cs-2 ........................................... Passed 0.25 sec test 69 Start 69: IdxText-cs-3 69: Test command: /usr/bin/sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema" "idx-text" "cs-3" "0" "n" "-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" 69: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 69: Test timeout computed to be: 1500 69: running test idx-text:cs-3 41/426 Test #69: IdxText-cs-3 ........................................... Passed 0.17 sec test 70 Start 70: Ref-Variation-1.0 70: Test command: /usr/bin/sh "./have-access.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "ref-variation" 70: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/test 70: Test timeout computed to be: 1500 70: ./have-access.sh: 6: vdb-config: not found 70: no access to repository, skipping ref-variation test... 42/426 Test #70: Ref-Variation-1.0 ...................................... Passed 0.00 sec test 71 Start 71: Var-Expand-1.0 71: Test command: /usr/bin/sh "./have-access.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "var-expand" 71: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/test 71: Test timeout computed to be: 1500 71: ./have-access.sh: 6: vdb-config: not found 71: no access to repository, skipping var-expand test... 43/426 Test #71: Var-Expand-1.0 ......................................... Passed 0.00 sec test 74 Start 74: Test_SraSearch_SearchBlock 74: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_SraSearch_SearchBlock 74: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 74: Test timeout computed to be: 1500 74: Running 8 test cases... 74: FgrepDumb (0 s) 74: SearchFgrepBoyerMoore (0 s) 74: SearchFgrepAho (0 s) 74: SearchAgrepDP (0 s) 74: SearchNucStrstr_NoExpr_NoCoords (0 s) 74: SearchNucStrstr_NoExpr_Coords_NotSupported (0 s) 74: SearchNucStrstr_Expr_Coords (0 s) 74: SearchSmithWaterman_Coords_NotSupported (0 s) 74: 74: *** No errors detected (0 s total) 44/426 Test #74: Test_SraSearch_SearchBlock ............................. Passed 0.01 sec test 75 Start 75: Test_SraSearchBlockWhiteBox 75: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_SraSearch_SearchBlock 75: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/external/sra-search/test 75: Test timeout computed to be: 1500 75: Running 8 test cases... 75: FgrepDumb (0 s) 75: SearchFgrepBoyerMoore (0 s) 75: SearchFgrepAho (0 s) 75: SearchAgrepDP (0 s) 75: SearchNucStrstr_NoExpr_NoCoords (0 s) 75: SearchNucStrstr_NoExpr_Coords_NotSupported (0 s) 75: SearchNucStrstr_Expr_Coords (0 s) 75: SearchSmithWaterman_Coords_NotSupported (0 s) 75: 75: *** No errors detected (0 s total) 45/426 Test #75: Test_SraSearchBlockWhiteBox ............................ Passed 0.01 sec test 78 Start 78: Test_SraSearch-1.0-h 78: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "1.0-h" "--args" "-h" 78: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 78: Test timeout computed to be: 1500 78: running test case 1.0-h... passed 46/426 Test #78: Test_SraSearch-1.0-h ................................... Passed 0.02 sec test 79 Start 79: Test_SraSearch-1.1-help 79: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "1.1-help" "--args" "--help" 79: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 79: Test timeout computed to be: 1500 79: running test case 1.1-help... passed 47/426 Test #79: Test_SraSearch-1.1-help ................................ Passed 0.02 sec test 80 Start 80: Test_SraSearch-1.2-V 80: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/execandgrep.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search -V" "3.2.1" 80: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 80: Test timeout computed to be: 1500 80: sra-search : 3.2.1 48/426 Test #80: Test_SraSearch-1.2-V ................................... Passed 0.02 sec test 81 Start 81: SraSearch-1.3-version 81: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/execandgrep.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search --version" "3.2.1" 81: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 81: Test timeout computed to be: 1500 81: sra-search : 3.2.1 49/426 Test #81: SraSearch-1.3-version .................................. Passed 0.01 sec test 82 Start 82: Test_SraSearch-2.0-no-args 82: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "2.0-no-args" "--rc" "3" 82: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 82: Test timeout computed to be: 1500 82: running test case 2.0-no-args... passed 50/426 Test #82: Test_SraSearch-2.0-no-args ............................. Passed 0.04 sec test 83 Start 83: Test_SraSearch-2.1-no-run 83: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "2.1-no-run" "--rc" "3" "--args" "AGCT" 83: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 83: Test timeout computed to be: 1500 83: running test case 2.1-no-run... passed 51/426 Test #83: Test_SraSearch-2.1-no-run .............................. Passed 0.04 sec test 84 Start 84: Test_SraSearch-2.2-missing-algorithm 84: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "2.2-missing-algorithm" "--rc" "3" "--args" "AGCT SRR000001 -a" 84: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 84: Test timeout computed to be: 1500 84: running test case 2.2-missing-algorithm... passed 52/426 Test #84: Test_SraSearch-2.2-missing-algorithm ................... Passed 0.04 sec test 85 Start 85: Test_SraSearch-2.3-bad-algorithm 85: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "2.3-bad-algorithm" "--rc" "3" "--args" "--algorithm bad AGCT SRR000001" 85: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 85: Test timeout computed to be: 1500 85: running test case 2.3-bad-algorithm... passed 53/426 Test #85: Test_SraSearch-2.3-bad-algorithm ....................... Passed 0.04 sec test 102 Start 102: Test_SraSearch-6.0.1-imperfect-match-no-arg 102: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "6.0.1-imperfect-match-no-arg" "--args" "AGCTAGCTAGCT SRR000001 -S" "--rc" "3" 102: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 102: Test timeout computed to be: 1500 102: running test case 6.0.1-imperfect-match-no-arg... passed 54/426 Test #102: Test_SraSearch-6.0.1-imperfect-match-no-arg ............ Passed 0.02 sec test 103 Start 103: Test_SraSearch-6.0.2-imperfect-match-bad-arg 103: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "6.0.2-imperfect-match-bad-arg" "--args" "AGCTAGCTAGCT SRR000001 -S qq" "--rc" "3" 103: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 103: Test timeout computed to be: 1500 103: running test case 6.0.2-imperfect-match-bad-arg... passed 55/426 Test #103: Test_SraSearch-6.0.2-imperfect-match-bad-arg ........... Passed 0.03 sec test 104 Start 104: Test_SraSearch-6.0.3-imperfect-match-default 104: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "6.0.3-imperfect-match-default" "--args" "AGCTAGCTAGCT -S 90 SRR000001" "--rc" "3" 104: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 104: Test timeout computed to be: 1500 104: running test case 6.0.3-imperfect-match-default... passed 56/426 Test #104: Test_SraSearch-6.0.3-imperfect-match-default ........... Passed 0.02 sec test 105 Start 105: Test_SraSearch-6.1-imperfect-match-fgrep-standard 105: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "6.1-imperfect-match-fgrep-standard" "--args" "AGCTAGCTAGCT --score 90 -a FgrepStandard SRR000001" "--rc" "3" 105: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 105: Test timeout computed to be: 1500 105: running test case 6.1-imperfect-match-fgrep-standard... passed 57/426 Test #105: Test_SraSearch-6.1-imperfect-match-fgrep-standard ...... Passed 0.02 sec test 106 Start 106: Test_SraSearch-6.2-imperfect-match-fgrep-boyer-moore 106: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "6.2-imperfect-match-fgrep-boyer-moore" "--args" "AGCTAGCTAGCT --score 90 --algorithm FgrepBoyerMoore SRR000001" "--rc" "3" 106: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 106: Test timeout computed to be: 1500 106: running test case 6.2-imperfect-match-fgrep-boyer-moore... passed 58/426 Test #106: Test_SraSearch-6.2-imperfect-match-fgrep-boyer-moore ... Passed 0.02 sec test 107 Start 107: Test_SraSearch-6.3-imperfect-match-fgrep-aho 107: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "6.3-imperfect-match-fgrep-aho" "--args" "AGCTAGCTAGCT --score 90 --algorithm FgrepAho SRR000001" "--rc" "3" 107: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 107: Test timeout computed to be: 1500 107: running test case 6.3-imperfect-match-fgrep-aho... passed 59/426 Test #107: Test_SraSearch-6.3-imperfect-match-fgrep-aho ........... Passed 0.02 sec test 112 Start 112: SraSearch-6.8-imperfect-match-nucstrstr 112: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "6.8-imperfect-match-nucstrstr" "--args" "AGCTAGCTAGCT --score 90 --algorithm NucStrstr SRR000001" "--rc" "3" 112: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 112: Test timeout computed to be: 1500 112: running test case 6.8-imperfect-match-nucstrstr... passed 60/426 Test #112: SraSearch-6.8-imperfect-match-nucstrstr ................ Passed 0.02 sec test 114 Start 114: Test_SraSearch-7.0.1-threads-no-arg 114: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "7.0.1-threads-no-arg" "--rc" "3" "--args" "AGCTAGCTAGCT SRR600094 SRR600095 -T" 114: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 114: Test timeout computed to be: 1500 114: running test case 7.0.1-threads-no-arg... passed 61/426 Test #114: Test_SraSearch-7.0.1-threads-no-arg .................... Passed 0.04 sec test 115 Start 115: Test_SraSearch-7.0.2-threads-bad-arg 115: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "7.0.2-threads-bad-arg" "--rc" "3" "--args" "AGCTAGCTAGCT SRR600094 SRR600095 --threads -1" 115: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 115: Test timeout computed to be: 1500 115: running test case 7.0.2-threads-bad-arg... passed 62/426 Test #115: Test_SraSearch-7.0.2-threads-bad-arg ................... Passed 0.04 sec test 120 Start 120: SlowTest_SraSearch-8.0-nothing-found 120: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "8.0-nothing-found" "--rc" "3" "--args" "TTTTTTTTAAAAAAACCCC -T 1 SRR000001" 120: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 120: Test timeout computed to be: 1500 120: running test case 8.0-nothing-found... passed 63/426 Test #120: SlowTest_SraSearch-8.0-nothing-found ................... Passed 0.09 sec test 124 Start 124: Test_SraSearch-9.3-reference-expression 124: Test command: /usr/bin/sh "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-search" "9.3-reference-expression" "--args" "ACGTAGGGTCC SRR600094 --reference --expression" "--rc" "3" 124: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 124: Test timeout computed to be: 1500 124: running test case 9.3-reference-expression... passed 64/426 Test #124: Test_SraSearch-9.3-reference-expression ................ Passed 0.04 sec test 126 Start 126: dump-ref-fasta-1.0-h 126: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/dump-ref-fasta" "1.0-h" "--args" "-h" 126: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test 126: Test timeout computed to be: 1500 126: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test/runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/dump-ref-fasta 1.0-h --args -h 126: running test case 1.0-h... passed 65/426 Test #126: dump-ref-fasta-1.0-h ................................... Passed 0.10 sec test 127 Start 127: dump-ref-fasta-1.1-help 127: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/dump-ref-fasta" "1.1-help" "--args" "--help" 127: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test 127: Test timeout computed to be: 1500 127: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test/runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/dump-ref-fasta 1.1-help --args --help 127: running test case 1.1-help... passed 66/426 Test #127: dump-ref-fasta-1.1-help ................................ Passed 0.10 sec test 128 Start 128: dump-ref-fasta-1.2-V 128: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test/execandgrep.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/dump-ref-fasta -V" "3.2.1" 128: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test 128: Test timeout computed to be: 1500 128: dump-ref-fasta : 3.2.1 67/426 Test #128: dump-ref-fasta-1.2-V ................................... Passed 0.08 sec test 129 Start 129: dump-ref-fasta-1.3-v 129: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test/execandgrep.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/dump-ref-fasta -v" "3.2.1" 129: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test 129: Test timeout computed to be: 1500 129: dump-ref-fasta : 3.2.1 68/426 Test #129: dump-ref-fasta-1.3-v ................................... Passed 0.08 sec test 130 Start 130: dump-ref-fasta-1.4-version 130: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test/execandgrep.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/dump-ref-fasta --version" "3.2.1" 130: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/test 130: Test timeout computed to be: 1500 130: dump-ref-fasta : 3.2.1 69/426 Test #130: dump-ref-fasta-1.4-version ............................. Passed 0.07 sec test 138 Start 138: PileupStats-Version 138: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats -V | grep -q `head -n 1 /build/reproducible-path/sra-sdk-3.2.1+dfsg/shared/toolkit.vers`" 138: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats/test 138: Test timeout computed to be: 1500 70/426 Test #138: PileupStats-Version .................................... Passed 0.01 sec test 139 Start 139: PileupStats-Help 139: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats -h | grep -q Usage" 139: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats/test 139: Test timeout computed to be: 1500 71/426 Test #139: PileupStats-Help ....................................... Passed 0.01 sec test 140 Start 140: PileupStats-NoArgs 140: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats; if [ $? == 0 ] ; then exit 1; fi;" 140: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats/test 140: Test timeout computed to be: 1500 140: 140: Usage: 140: pileup-stats [options] 140: 140: Options: 140: -o|--output-file file for output 140: (default pipe to stdout) 140: -r|--remote-db name of remote database to create 140: (default .pileup_stat) 140: -x|--depth-cutoff cutoff for depth <= value (default 1) 140: -e|--event-cutoff cutoff for number of events > value (default 1) 140: -p|--num-significant-bits number of significant bits for depth and counts to store (default 4) 140: -a|--align-category the types of alignments to pile up: 140: { primary, secondary, all } (default primary) 140: --buffer-size bytes size of output pipe buffer - default 32K bytes 140: -U|--unpack-integer don't pack integers in output pipe - uses more bandwidth 140: -h|--help output brief explanation of the program 140: -v|--verbose increase the verbosity of the program. 140: -V|--version display the version of the program then quit. 140: use multiple times for more verbosity. 140: --log-stderr log via stderr rather than general-writer API (default - general-writer API) 140: 140: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats : 3.2.1 140: 140: /usr/bin/sh: 1: [: 3: unexpected operator 72/426 Test #140: PileupStats-NoArgs ..................................... Passed 0.01 sec test 141 Start 141: PileupStats-IgnoreArgs-L 141: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats -L 1; if [ $? == 0 ] ; then exit 1; fi;" 141: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats/test 141: Test timeout computed to be: 1500 141: 141: Usage: 141: pileup-stats [options] 141: 141: Options: 141: -o|--output-file file for output 141: (default pipe to stdout) 141: -r|--remote-db name of remote database to create 141: (default .pileup_stat) 141: -x|--depth-cutoff cutoff for depth <= value (default 1) 141: -e|--event-cutoff cutoff for number of events > value (default 1) 141: -p|--num-significant-bits number of significant bits for depth and counts to store (default 4) 141: -a|--align-category the types of alignments to pile up: 141: { primary, secondary, all } (default primary) 141: --buffer-size bytes size of output pipe buffer - default 32K bytes 141: -U|--unpack-integer don't pack integers in output pipe - uses more bandwidth 141: -h|--help output brief explanation of the program 141: -v|--verbose increase the verbosity of the program. 141: -V|--version display the version of the program then quit. 141: use multiple times for more verbosity. 141: --log-stderr log via stderr rather than general-writer API (default - general-writer API) 141: 141: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats : 3.2.1 141: 141: /usr/bin/sh: 1: [: 3: unexpected operator 73/426 Test #141: PileupStats-IgnoreArgs-L ............................... Passed 0.01 sec test 142 Start 142: PileupStats-IgnoreArgs-z 142: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats -z ignore.txt; if [ $? == 0 ] ; then exit 1; fi;" 142: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats/test 142: Test timeout computed to be: 1500 142: 142: Usage: 142: pileup-stats [options] 142: 142: Options: 142: -o|--output-file file for output 142: (default pipe to stdout) 142: -r|--remote-db name of remote database to create 142: (default .pileup_stat) 142: -x|--depth-cutoff cutoff for depth <= value (default 1) 142: -e|--event-cutoff cutoff for number of events > value (default 1) 142: -p|--num-significant-bits number of significant bits for depth and counts to store (default 4) 142: -a|--align-category the types of alignments to pile up: 142: { primary, secondary, all } (default primary) 142: --buffer-size bytes size of output pipe buffer - default 32K bytes 142: -U|--unpack-integer don't pack integers in output pipe - uses more bandwidth 142: -h|--help output brief explanation of the program 142: -v|--verbose increase the verbosity of the program. 142: -V|--version display the version of the program then quit. 142: use multiple times for more verbosity. 142: --log-stderr log via stderr rather than general-writer API (default - general-writer API) 142: 142: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats : 3.2.1 142: 142: /usr/bin/sh: 1: [: 3: unexpected operator 74/426 Test #142: PileupStats-IgnoreArgs-z ............................... Passed 0.01 sec test 143 Start 143: PileupStats-IgnoreArgs-loglevel 143: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats --log-level 1; if [ $? == 0 ] ; then exit 1; fi;" 143: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats/test 143: Test timeout computed to be: 1500 143: 143: Usage: 143: pileup-stats [options] 143: 143: Options: 143: -o|--output-file file for output 143: (default pipe to stdout) 143: -r|--remote-db name of remote database to create 143: (default .pileup_stat) 143: -x|--depth-cutoff cutoff for depth <= value (default 1) 143: -e|--event-cutoff cutoff for number of events > value (default 1) 143: -p|--num-significant-bits number of significant bits for depth and counts to store (default 4) 143: -a|--align-category the types of alignments to pile up: 143: { primary, secondary, all } (default primary) 143: --buffer-size bytes size of output pipe buffer - default 32K bytes 143: -U|--unpack-integer don't pack integers in output pipe - uses more bandwidth 143: -h|--help output brief explanation of the program 143: -v|--verbose increase the verbosity of the program. 143: -V|--version display the version of the program then quit. 143: use multiple times for more verbosity. 143: --log-stderr log via stderr rather than general-writer API (default - general-writer API) 143: 143: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats : 3.2.1 143: 143: /usr/bin/sh: 1: [: 3: unexpected operator 75/426 Test #143: PileupStats-IgnoreArgs-loglevel ........................ Passed 0.01 sec test 144 Start 144: PileupStats-IgnoreArgs-xmllog 144: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats --xml-log ignore.txt; if [ $? == 0 ] ; then exit 1; fi;" 144: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats/test 144: Test timeout computed to be: 1500 144: 144: Usage: 144: pileup-stats [options] 144: 144: Options: 144: -o|--output-file file for output 144: (default pipe to stdout) 144: -r|--remote-db name of remote database to create 144: (default .pileup_stat) 144: -x|--depth-cutoff cutoff for depth <= value (default 1) 144: -e|--event-cutoff cutoff for number of events > value (default 1) 144: -p|--num-significant-bits number of significant bits for depth and counts to store (default 4) 144: -a|--align-category the types of alignments to pile up: 144: { primary, secondary, all } (default primary) 144: --buffer-size bytes size of output pipe buffer - default 32K bytes 144: -U|--unpack-integer don't pack integers in output pipe - uses more bandwidth 144: -h|--help output brief explanation of the program 144: -v|--verbose increase the verbosity of the program. 144: -V|--version display the version of the program then quit. 144: use multiple times for more verbosity. 144: --log-stderr log via stderr rather than general-writer API (default - general-writer API) 144: 144: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats : 3.2.1 144: 144: /usr/bin/sh: 1: [: 3: unexpected operator 76/426 Test #144: PileupStats-IgnoreArgs-xmllog .......................... Passed 0.01 sec test 145 Start 145: PileupStats-IgnoreArgs-xmllogfd 145: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats --xml-log-fd ignore.txt; if [ $? == 0 ] ; then exit 1; fi;" 145: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/tools/test-tools/pileup-stats/test 145: Test timeout computed to be: 1500 145: 145: Usage: 145: pileup-stats [options] 145: 145: Options: 145: -o|--output-file file for output 145: (default pipe to stdout) 145: -r|--remote-db name of remote database to create 145: (default .pileup_stat) 145: -x|--depth-cutoff cutoff for depth <= value (default 1) 145: -e|--event-cutoff cutoff for number of events > value (default 1) 145: -p|--num-significant-bits number of significant bits for depth and counts to store (default 4) 145: -a|--align-category the types of alignments to pile up: 145: { primary, secondary, all } (default primary) 145: --buffer-size bytes size of output pipe buffer - default 32K bytes 145: -U|--unpack-integer don't pack integers in output pipe - uses more bandwidth 145: -h|--help output brief explanation of the program 145: -v|--verbose increase the verbosity of the program. 145: -V|--version display the version of the program then quit. 145: use multiple times for more verbosity. 145: --log-stderr log via stderr rather than general-writer API (default - general-writer API) 145: 145: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/pileup-stats : 3.2.1 145: 145: /usr/bin/sh: 1: [: 3: unexpected operator 77/426 Test #145: PileupStats-IgnoreArgs-xmllogfd ........................ Passed 0.01 sec test 147 Start 147: Test_VDB 147: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_VDB 147: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb 147: Test timeout computed to be: 1500 147: Running 38 test cases... 147: Error_RcToString (0 s) 147: Error_RcToString_English (0 s) 147: Manager_Construction (0 s) 147: RC 1426393646 thrown by ./libs/inc/vdb.hpp:259 147: Manager_Schema_Bad (0 s) 147: Manager_Schema_Good (0 s) 147: Manager_Schema_Include (0 s) 147: Manager_SchemaFromFile (0 s) 147: Manager_SchemaFromFile_Bad (0 s) 147: RC 2615477144 thrown by ./libs/inc/vdb.hpp:809 147: Manager_Database_Bad (0 s) 147: Manager_OpenDatabase_Good (0 s) 147: RC 1273301772 thrown by ./libs/inc/vdb.hpp:816 147: Manager_OpenTable_Bad (0 s) 147: Manager_OpenTable_Good (0 s) 147: Manager_PathType_Table (0 s) 147: Manager_PathType_Database (0 s) 147: Manager_PathType_Invalid (0 s) 147: RC 807538648 thrown by ./libs/inc/vdb.hpp:732 147: Database_Table_Bad (0 s) 147: Database_Table_Good (0 s) 147: Database_hasTable_Yes (0 s) 147: Database_hasTable_No (0 s) 147: Table_Default (0 s) 147: Table_Assign (0 s) 147: RC 1367638680 thrown by ./libs/inc/vdb.hpp:645 147: Table_ReadCursor1_BadColumn (0 s) 147: Table_ReadCursor1 (0 s) 147: RC 1367638680 thrown by ./libs/inc/vdb.hpp:673 147: Table_ReadCursor2_BadColumn (0 s) 147: Table_ReadCursor2 (0 s) 147: Table_PhysicaColumns (0 s) 147: Cursor_Columns (0 s) 147: Cursor_RowRange (0 s) 147: Cursor_ReadOne (0 s) 147: Cursor_ReadN (0 s) 147: Cursor_ForEach (0 s) 147: Cursor_ForEachWithFilter (0 s) 147: Cursor_IsStaticColumn_True (0 s) 147: Cursor_IsStaticColumn_False (0 s) 147: RawData_asVector_badCast (0 s) 147: RawData_asVector (0 s) 147: RawData_value_badCast (0 s) 147: RawData_value (0 s) 147: 147: *** No errors detected (0 s total) 78/426 Test #147: Test_VDB ............................................... Passed 0.97 sec test 148 Start 148: Test_WVDB 148: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_WVDB 148: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb 148: Test timeout computed to be: 1500 148: Running 2 test cases... 148: PlatformNames (0 s) 148: ProductionSchema (0 s) 148: 148: *** No errors detected (0 s total) 79/426 Test #148: Test_WVDB .............................................. Passed 0.97 sec test 149 Start 149: Test_SraSchema_Unit 149: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_SraSchema_Unit 149: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/schema 149: Test timeout computed to be: 1500 149: Running 1 test case... 149: UseSraFunction (0 s) 149: 149: *** No errors detected (0 s total) 80/426 Test #149: Test_SraSchema_Unit .................................... Passed 0.08 sec test 150 Start 150: Test_SraSchema_454_db 150: Test command: /usr/bin/python3 "test_VDB-5250.py" 150: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/schema 150: Environment variables: 150: VDB_LIBRARY_PATH=/usr/lib/aarch64-linux-gnu 150: VDB_SRCDIR=/usr/include/ncbi-vdb/.. 150: Test timeout computed to be: 1500 81/426 Test #150: Test_SraSchema_454_db .................................. Passed 0.14 sec test 151 Start 151: Test_SraSchema_IonTorrent_db 151: Test command: /usr/bin/python3 "test_VDB-5251.py" 151: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/schema 151: Environment variables: 151: VDB_LIBRARY_PATH=/usr/lib/aarch64-linux-gnu 151: VDB_SRCDIR=/usr/include/ncbi-vdb/.. 151: Test timeout computed to be: 1500 82/426 Test #151: Test_SraSchema_IonTorrent_db ........................... Passed 0.18 sec test 152 Start 152: Test_SEARCH_agrep 152: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_SEARCH_agrep 152: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search 152: Test timeout computed to be: 1500 152: Running 39 test cases... 152: AgrepDPTest (0 s) 152: AgrepWumanberTest (0 s) 152: AgrepMyersTest (0 s) 152: AgrepMyersUnltdTest (0 s) 152: SearchCompare test is currently OFF 152: SearchCompare (0 s) 152: TestCaseAgrep test is currently OFF 152: TestCaseAgrep (0 s) 152: DumbGrep_Crash (0 s) 152: BoyerMooreGrep_Crash (0 s) 152: AhoGrep_Crash (0 s) 152: SmithWatermanTest (0 s) 152: RefVariation_crash (0 s) 152: RefVariation_bounds_N (0 s) 152: Nucstrstr_NonPositional_NotFound (0 s) 152: Nucstrstr_NonPositional_Found_AtStart (0 s) 152: Nucstrstr_NonPositional_Found_InMiddle (0 s) 152: Nucstrstr_Positional_NoExpr_NotFound (0 s) 152: Nucstrstr_Positional_NoExpr_Found_AtStart (0 s) 152: Nucstrstr_Positional_NoExpr_Found_InMiddle (0 s) 152: Nucstrstr_Positional_Not_False (0 s) 152: Nucstrstr_Positional_Not_True (0 s) 152: Nucstrstr_Positional_Caret_Found (0 s) 152: Nucstrstr_Positional_Caret_NotFound (0 s) 152: Nucstrstr_Positional_Dollar_Found (0 s) 152: Nucstrstr_Positional_Dollar_NotFound (0 s) 152: Nucstrstr_Positional_OR_Found_1 (0 s) 152: Nucstrstr_Positional_OR_Found_2 (0 s) 152: Nucstrstr_Positional_OR_Found_FirstMatchPositionReported (0 s) 152: Nucstrstr_Positional_OR_NotFound (0 s) 152: Nucstrstr_Positional_AND_Found_LastMatchPositionReported (0 s) 152: Nucstrstr_Positional_AND_NotFound (0 s) 152: Nucstrstr_Positional_AND_OR_Found_1 (0 s) 152: Nucstrstr_Positional_AND_OR_Found_2 (0 s) 152: Nucstrstr_Positional_AND_OR_Found_3 (0 s) 152: Nucstrstr_Positional_AND_OR_NOT_NotFound (0 s) 152: Nucstrstr_Positional_AND_OR_NOT_Found (0 s) 152: Nucstrstr_Positional_Error (0 s) 152: Nucstrstr_NonPositional_4NA_NotFound (0 s) 152: Nucstrstr_NonPositional_4NA_Found_AtStart (0 s) 152: Nucstrstr_NonPositional_4NA_Found_InMiddle (0 s) 152: 152: *** No errors detected (0 s total) 83/426 Test #152: Test_SEARCH_agrep ...................................... Passed 0.01 sec test 153 Start 153: Test_NgsJava_lib_load 153: Test command: /usr/bin/java "-cp" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/test-ngs-java.jar:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/lib/ngs-java.jar:/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java/junit-4.11.jar" "-Dvdb.System.loadLibrary=1" "-Dvdb.log=FINEST" "org.junit.runner.JUnitCore" "gov.nih.nlm.ncbi.ngs.ngs_test_lib_load" 153: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java 153: Test timeout computed to be: 1500 153: JUnit version 4.11 153: ......... 153: Time: 0.053 153: 153: OK (9 tests) 153: 84/426 Test #153: Test_NgsJava_lib_load .................................. Passed 0.27 sec test 157 Start 157: Test_Align_Info_H 157: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/align-info "-h" 157: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/align-info 157: Test timeout computed to be: 1500 157: Usage: 157: align-info [options] 157: 157: Summary: 157: Print database alignment information 157: 157: Parameters: 157: db-path Path to the database 157: 157: Options: 157: -a|--all print all information 157: -r|--ref print refseq information [default] 157: -b|--bam print bam header (if present) 157: -Q|--qual print quality statistics (if present) 157: -H|--headers print headers for output blocks 157: --ngc path to ngc file 157: 157: -h|--help Output brief explanation for the program. 157: -V|--version Display the version of the program then 157: quit. 157: -L|--log-level Logging level as number or enum string. One 157: of (fatal|sys|int|err|warn|info|debug) or 157: (0-6) Current/default is warn. 157: -v|--verbose Increase the verbosity of the program 157: status messages. Use multiple times for more 157: verbosity. Negates quiet. 157: -q|--quiet Turn off all status messages for the 157: program. Negated by verbose. 157: --option-file Read more options and parameters from the 157: file. 157: 157: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/align-info : 3.2.1 157: 85/426 Test #157: Test_Align_Info_H ...................................... Passed 0.01 sec test 159 Start 159: Test_Drivertool_BuildVersion 159: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_Drivertool_BuildVersion 159: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool 159: Test timeout computed to be: 1500 159: Test_Version passed. 86/426 Test #159: Test_Drivertool_BuildVersion ........................... Passed 0.00 sec test 160 Start 160: Test_Drivertool_FilePath 160: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_Drivertool_FilePath 160: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool 160: Test timeout computed to be: 1500 160: Running 29 test cases... 160: DefaultConstruct (0 s) 160: Construct_Cstring (0 s) 160: Construct_String (0 s) 160: CopyConstruct_Empty (0 s) 160: CopyConstruct (0 s) 160: Assign_Empty (0 s) 160: Assign (0 s) 160: Copy (0 s) 160: Split (0 s) 160: BaseName (0 s) 160: Append (0 s) 160: RemoveSuffix_0 (0 s) 160: RemoveSuffix (0 s) 160: RemoveSuffix_Ext (0 s) 160: RemoveSuffix_Oversized (0 s) 160: SimpleName (0 s) 160: CWD (0 s) 160: Exists (0 s) 160: CWD_Append (0 s) 160: Exists_Static (0 s) 160: Readable (0 s) 160: IsSame_Directory (0 s) 160: NotIsSame_Directory (0 s) 160: IsSame_File (0 s) 160: NotIsSame_File (0 s) 160: ChangeDirectoryToParentAndBackAgain (0 s) 160: ChangeDirectoryToFile (0 s) 160: Current_Executable (0 s) 160: Executable_Yes (0 s) 160: 160: *** No errors detected (0 s total) 87/426 Test #160: Test_Drivertool_FilePath ............................... Passed 0.01 sec test 161 Start 161: Test_Drivertool_CommandLine 161: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_Drivertool_CommandLine 161: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool 161: Test timeout computed to be: 1500 161: Test_CommandLine passed. 88/426 Test #161: Test_Drivertool_CommandLine ............................ Passed 0.00 sec test 162 Start 162: Test_Drivertool_JsonParsing 162: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_Drivertool_JsonParsing 162: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool 162: Test timeout computed to be: 1500 89/426 Test #162: Test_Drivertool_JsonParsing ............................ Passed 0.03 sec test 163 Start 163: Test_Drivertool_SDLResponse 163: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_Drivertool_SDLResponse 163: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool 163: Test timeout computed to be: 1500 90/426 Test #163: Test_Drivertool_SDLResponse ............................ Passed 0.01 sec test 164 Start 164: Test_Drivertool_Accession 164: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_Drivertool_Accession 164: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool 164: Test timeout computed to be: 1500 91/426 Test #164: Test_Drivertool_Accession .............................. Passed 0.00 sec test 165 Start 165: Test_Drivertool_UUID 165: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_Drivertool_UUID 165: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool 165: Test timeout computed to be: 1500 92/426 Test #165: Test_Drivertool_UUID ................................... Passed 0.09 sec test 166 Start 166: Test_Drivertool_RunSource 166: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_Drivertool_RunSource 166: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool 166: Test timeout computed to be: 1500 166: Running 18 test cases... 166: CopmmandLine_GetToolPath (0 s) 166: CommandLine_Defaults (0 s) 166: UnknownTool (0 s) 166: URL_parameter (0 s) 166: ConstructNoSDL (0 s) 166: ConstructSDL_false (0 s) 166: ConstructSDL_true (0 s) 166: ConstructSDL_badSDL (0 s) 166: ConstructSDL_noResults (0 s) 166: ConstructSDL_oneResult (0 s) 166: ConstructSDL_multipleFiles (0 s) 166: ConstructSDL_multipleLocations (0 s) 166: Query SRR000001: Error 400 no data 166: ConstructSDL_status_400 (0 s) 166: ConstructSDL_status_404 (0 s) 166: No usable source for SRR000001 was found. 166: SRR000001 might be available in a different cloud provider or region. 166: ConstructSDL_pileupIgnored (0 s) 166: No usable source for SRR000001 was found. 166: SRR000001 might be available in a different cloud provider or region. 166: ConstructSDL_noObject_Ignored (0 s) 166: No usable source for SRR000001 was found. 166: SRR000001 might be available in a different cloud provider or region. 166: ConstructSDL_noQuality_Ignored (0 s) 166: No usable source for SRR000001 was found. 166: SRR000001 might be available in a different cloud provider or region. 166: ConstructSDL_Encrypted_NoNGC_Skipped (0 s) 166: 166: *** No errors detected (0 s total) 93/426 Test #166: Test_Drivertool_RunSource .............................. Passed 0.01 sec test 167 Start 167: Test_Drivertool_ToolArgs 167: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_Drivertool_ToolArgs 167: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool 167: Test timeout computed to be: 1500 167: Running 1 test case... 167: ParseArgs (0 s) 167: 167: *** No errors detected (0 s total) 94/426 Test #167: Test_Drivertool_ToolArgs ............................... Passed 0.01 sec test 168 Start 168: Test_FasterqDump_Help 168: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/fasterq-dump "-h" 168: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/fasterq-dump 168: Test timeout computed to be: 1500 168: 168: Usage: 168: fasterq-dump [options] 168: fasterq-dump [options] 168: 168: Options: 168: -F|--format format (special, fastq, default=fastq) 168: -o|--outfile output-file 168: -O|--outdir output-dir 168: -b|--bufsize size of file-buffer dflt=1MB 168: -c|--curcache size of cursor-cache dflt=10MB 168: -m|--mem memory limit for sorting dflt=100MB 168: -t|--temp where to put temp. files dflt=curr dir 168: -e|--threads how many thread dflt=6 168: -p|--progress show progress 168: -x|--details print details 168: -s|--split-spot split spots into reads 168: -S|--split-files write reads into different files 168: -3|--split-3 writes single reads in special file 168: --concatenate-reads writes whole spots into one file 168: -Z|--stdout print output to stdout 168: -f|--force force to overwrite existing file(s) 168: --skip-technical skip technical reads 168: --include-technical include technical reads 168: -M|--min-read-len filter by sequence-len 168: --table which seq-table to use in case of pacbio 168: -B|--bases filter by bases 168: -A|--append append to output-file 168: --fasta produce FASTA output 168: --fasta-unsorted produce FASTA output, unsorted 168: --fasta-ref-tbl produce FASTA output from REFERENCE tbl 168: --fasta-concat-all concatenate all rows and produce FASTA 168: --internal-ref extract only internal REFERENCEs 168: --external-ref extract only external REFERENCEs 168: --ref-name extract only these REFERENCEs 168: --ref-report enumerate references 168: --use-name print name instead of seq-id 168: --seq-defline custom defline for sequence: $ac=accession, 168: $sn=spot-name, $sg=spot-group, $si=spot-id, 168: $ri=read-id, $rl=read-length 168: --qual-defline custom defline for qualities: same as 168: seq-defline 168: -U|--only-unaligned process only unaligned reads 168: -a|--only-aligned process only aligned reads 168: --disk-limit explicitly set disk-limit 168: --disk-limit-tmp explicitly set disk-limit for temp. files 168: --size-check switch to control: on=perform size-check 168: (default), off=do not perform size-check, 168: only=perform size-check only 168: --ngc PATH to ngc file 168: 168: -h|--help Output brief explanation for the program. 168: -V|--version Display the version of the program then 168: quit. 168: -L|--log-level Logging level as number or enum string. One 168: of (fatal|sys|int|err|warn|info|debug) or 168: (0-6) Current/default is warn. 168: -v|--verbose Increase the verbosity of the program 168: status messages. Use multiple times for more 168: verbosity. Negates quiet. 168: -q|--quiet Turn off all status messages for the 168: program. Negated by verbose. 168: --option-file Read more options and parameters from the 168: file. 168: for more information visit: 168: https://github.com/ncbi/sra-tools/wiki/HowTo:-fasterq-dump 168: https://github.com/ncbi/sra-tools/wiki/08.-prefetch-and-fasterq-dump 168: 168: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/fasterq-dump : 3.2.1 168: 95/426 Test #168: Test_FasterqDump_Help .................................. Passed 0.01 sec test 169 Start 169: Test_FasterqDump_NotZeroWithoutParameters 169: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/fasterq-dump 169: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/fasterq-dump 169: Test timeout computed to be: 1500 169: 169: Usage: 169: fasterq-dump [options] 169: fasterq-dump [options] 169: 169: Options: 169: -F|--format format (special, fastq, default=fastq) 169: -o|--outfile output-file 169: -O|--outdir output-dir 169: -b|--bufsize size of file-buffer dflt=1MB 169: -c|--curcache size of cursor-cache dflt=10MB 169: -m|--mem memory limit for sorting dflt=100MB 169: -t|--temp where to put temp. files dflt=curr dir 169: -e|--threads how many thread dflt=6 169: -p|--progress show progress 169: -x|--details print details 169: -s|--split-spot split spots into reads 169: -S|--split-files write reads into different files 169: -3|--split-3 writes single reads in special file 169: --concatenate-reads writes whole spots into one file 169: -Z|--stdout print output to stdout 169: -f|--force force to overwrite existing file(s) 169: --skip-technical skip technical reads 169: --include-technical include technical reads 169: -M|--min-read-len filter by sequence-len 169: --table which seq-table to use in case of pacbio 169: -B|--bases filter by bases 169: -A|--append append to output-file 169: --fasta produce FASTA output 169: --fasta-unsorted produce FASTA output, unsorted 169: --fasta-ref-tbl produce FASTA output from REFERENCE tbl 169: --fasta-concat-all concatenate all rows and produce FASTA 169: --internal-ref extract only internal REFERENCEs 169: --external-ref extract only external REFERENCEs 169: --ref-name extract only these REFERENCEs 169: --ref-report enumerate references 169: --use-name print name instead of seq-id 169: --seq-defline custom defline for sequence: $ac=accession, 169: $sn=spot-name, $sg=spot-group, $si=spot-id, 169: $ri=read-id, $rl=read-length 169: --qual-defline custom defline for qualities: same as 169: seq-defline 169: -U|--only-unaligned process only unaligned reads 169: -a|--only-aligned process only aligned reads 169: --disk-limit explicitly set disk-limit 169: --disk-limit-tmp explicitly set disk-limit for temp. files 169: --size-check switch to control: on=perform size-check 169: (default), off=do not perform size-check, 169: only=perform size-check only 169: --ngc PATH to ngc file 169: 169: -h|--help Output brief explanation for the program. 169: -V|--version Display the version of the program then 169: quit. 169: -L|--log-level Logging level as number or enum string. One 169: of (fatal|sys|int|err|warn|info|debug) or 169: (0-6) Current/default is warn. 169: -v|--verbose Increase the verbosity of the program 169: status messages. Use multiple times for more 169: verbosity. Negates quiet. 169: -q|--quiet Turn off all status messages for the 169: program. Negated by verbose. 169: --option-file Read more options and parameters from the 169: file. 169: for more information visit: 169: https://github.com/ncbi/sra-tools/wiki/HowTo:-fasterq-dump 169: https://github.com/ncbi/sra-tools/wiki/08.-prefetch-and-fasterq-dump 169: 169: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/fasterq-dump : 3.2.1 169: 96/426 Test #169: Test_FasterqDump_NotZeroWithoutParameters .............. Passed 0.01 sec test 171 Start 171: Test_FasterDump_Fasta_unsorted_flat_tbl_read_id 171: Test command: /usr/bin/sh "test_for_read_id_flat.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" 171: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/fasterq-dump 171: Test timeout computed to be: 1500 171: spots read : 10 171: reads read : 20 171: reads written : 20 171: READ_ID1: 10 171: READ_ID2: 10 171: success testing read-id for --fasta-unsorted mode on flat table 97/426 Test #171: Test_FasterDump_Fasta_unsorted_flat_tbl_read_id ........ Passed 0.26 sec test 172 Start 172: Test_FasterDump_Fasta_unsorted_cSRA_read_id 172: Test command: /usr/bin/cmake "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/fasterq-dump" "sh" "-c" "echo 'vdb/schema/paths = "/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb"' > tmp.kfg; ./test_for_read_id_cSRA.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" 172: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/fasterq-dump 172: Test timeout computed to be: 1500 172: spots read : 10 172: reads read : 20 172: reads written : 20 172: READ_ID1: 10 172: READ_ID2: 10 172: success testing read-id for --fasta-unsorted mode on cSRA table 98/426 Test #172: Test_FasterDump_Fasta_unsorted_cSRA_read_id ............ Passed 0.52 sec test 173 Start 173: Test_Tiny_cSRA 173: Test command: /usr/bin/cmake "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/fasterq-dump" "sh" "-c" "echo 'vdb/schema/paths = "/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb"' > tmp.kfg; ./tiny_csra.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" 173: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/fasterq-dump 173: Test timeout computed to be: 1500 173: ./tiny_csra.sh: 17: [[: not found 173: ./tiny_csra.sh: 26: [[: not found 173: ./tiny_csra.sh: 32: [[: not found 173: ./tiny_csra.sh: 38: [[: not found 173: -e 173: testing /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/fasterq-dump on tiny cSRA-accession 173: ./tiny_csra.sh: 46: [[: not found 173: ./tiny_csra.sh: 65: [[: not found 173: ./tiny_csra.sh: 70: [[: not found 173: ./tiny_csra.sh: 75: [[: not found 173: ./tiny_csra.sh: 86: [[: not found 173: ./tiny_csra.sh: 99: [[: not found 173: spots read : 3 173: reads read : 3 173: reads written : 3 173: ./tiny_csra.sh: 111: [[: not found 99/426 Test #173: Test_Tiny_cSRA ......................................... Passed 0.85 sec test 182 Start 182: Test_Prefetch_In_PATH 182: Test command: /usr/bin/cmake "-E" "env" "PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin:/bin" "sh" "-c" "prefetch -h > /dev/null" 182: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test/external/prefetch 182: Test timeout computed to be: 1500 100/426 Test #182: Test_Prefetch_In_PATH .................................. Passed 0.04 sec test 190 Start 190: SamDumpTestSetup 190: Test command: /usr/bin/sh "-c" "echo 'vdb/schema/paths = "/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" /LIBS/GUID="8test002-6ab7-41b2-bfd0-sam-dump-test"' > tmp.kfg" 190: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump 190: Test timeout computed to be: 1500 101/426 Test #190: SamDumpTestSetup ....................................... Passed 0.00 sec test 191 Start 191: Test_sam_dump_verify_omit 191: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump" "./verify_omit_qual.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" 191: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump 191: Test timeout computed to be: 1500 102/426 Test #191: Test_sam_dump_verify_omit .............................. Passed 1.25 sec test 192 Start 192: Test_sam_dump_star_quality 192: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump" "./print_star_on_missing_qual.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" 192: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump 192: Test timeout computed to be: 1500 103/426 Test #192: Test_sam_dump_star_quality ............................. Passed 0.89 sec test 193 Start 193: Test_Srapath_Check_exit_code 193: Test command: /usr/bin/cmake "-E" "env" "VDB_CONFIG=../.." "/usr/bin/python3" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/build/check-exit-code.py" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/srapath" 193: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/srapath 193: Test timeout computed to be: 1500 193: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/srapath] 104/426 Test #193: Test_Srapath_Check_exit_code ........................... Passed 0.11 sec test 195 Start 195: Test_SraPileup_Check_exit_code 195: Test command: /usr/bin/cmake "-E" "env" "VDB_CONFIG=.." "/usr/bin/python3" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/build/check-exit-code.py" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-pileup" 195: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-pileup 195: Test timeout computed to be: 1500 195: WARNING[TEST1] help message is in 'STDOUT' 195: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-pileup] 105/426 Test #195: Test_SraPileup_Check_exit_code ......................... Passed 0.17 sec test 200 Start 200: Test_VDB_Config_model 200: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config/model.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/test-vdb-config-model" 200: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config 200: Test timeout computed to be: 1500 200: testing /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/test-vdb-config-model 200: Running 11 test cases... 200: get_config_changed (0 s) 200: prefetch_download_to_cache (0 s) 200: user_accept_aws_charges (0 s) 200: user_accept_gcp_charges (0 s) 200: ./test/external/vdb-config/test-vdb-config-model.cpp:92: fatal error in "temp_cache_location": critical check string ( "path" ) == m . get_temp_cache_location() failed [path != /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config/path] 200: temp_cache_location (0 s) 200: gcp_credential_file_location (0 s) 200: aws_credential_file_location (0 s) 200: aws_profile (0 s) 200: noCommit (0 s) 200: Commit (0 s) 200: Reload (0 s) 200: 200: *** 1 failure detected in test suite "VdbConfStridesModelTestSuite" 200: VDB Copy model test is finished 106/426 Test #200: Test_VDB_Config_model .................................. Passed 0.10 sec test 201 Start 201: Test_VDB_Config 201: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config/test-vdb-config.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" 201: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config 201: Test timeout computed to be: 1500 201: Testing /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-config... 201: VDB config test is finished 107/426 Test #201: Test_VDB_Config ........................................ Passed 0.08 sec test 202 Start 202: Test_Vdb_dump_Check_exit_code 202: Test command: /usr/bin/cmake "-E" "env" "VDB_CONFIG=.." "/usr/bin/python3" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/build/check-exit-code.py" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump" 202: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump 202: Test timeout computed to be: 1500 202: WARNING[TEST1] help message is in 'STDOUT' 202: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump] 108/426 Test #202: Test_Vdb_dump_Check_exit_code .......................... Passed 0.18 sec test 203 Start 203: Test_Vdb_dump_view-spec 203: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_Vdb_dump_view-spec 203: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump 203: Test timeout computed to be: 1500 203: Running 21 test cases... 203: NullSelf (0 s) 203: NullSpec (0 s) 203: EmptySpec (0 s) 203: NullError (0 s) 203: ZeroSizeError (0 s) 203: MissingLeftAngle (0 s) 203: EmptyAngles (0 s) 203: OneParam (0 s) 203: ManyParams (0 s) 203: MissingComma (0 s) 203: MissingParam (0 s) 203: ExtraChars (0 s) 203: NestedViews (0 s) 203: ViewSpecOpen_NullSelf (0 s) 203: ViewSpecOpen_NullParam_Db (0 s) 203: ViewSpecOpen_NullParam_Schema (0 s) 203: ViewSpecOpen_NullParam_View (0 s) 203: ViewSpecOpen_WrongNumberOfParams (0 s) 203: ViewSpecOpen_ParamNotTable (0 s) 203: MakeCursor (0 s) 203: NestedView (0 s) 203: 203: *** No errors detected (0 s total) 109/426 Test #203: Test_Vdb_dump_view-spec ................................ Passed 0.10 sec test 206 Start 206: Test_VdbValidate_Unit 206: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_VdbValidate_Unit 206: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-validate 206: Test timeout computed to be: 1500 206: Running 3 test cases... 206: is_sorted_empty (0 s) 206: is_sorted_sorted (0 s) 206: is_sorted_unsorted (0 s) 206: 206: *** No errors detected (0 s total) 110/426 Test #206: Test_VdbValidate_Unit .................................. Passed 0.01 sec test 210 Start 210: Test_Sra_Info_Help 210: Test command: /usr/bin/sh "-c" "ls /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info>/dev/null 2>&1 && /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info -h >actual/Test_Sra_Info_Help.stdout || echo no sra-info" 210: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 210: Test timeout computed to be: 1500 111/426 Test #210: Test_Sra_Info_Help ..................................... Passed 0.01 sec test 211 Start 211: Test_Sra_Info_NoParam 211: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/runfailtest.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info" "" "." 211: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 211: Test timeout computed to be: 1500 211: running 211: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info 1>./actual//stdout 2>./actual//stderr 112/426 Test #211: Test_Sra_Info_NoParam .................................. Passed 0.09 sec test 212 Start 212: Test_Sra_Info_MultipleParams 212: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/runfailtest.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info" "SRR000123 SRR0001234" "." 212: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 212: Test timeout computed to be: 1500 212: running 212: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info SRR000123 SRR0001234 1>./actual//stdout 2>./actual//stderr 113/426 Test #212: Test_Sra_Info_MultipleParams ........................... Passed 0.09 sec test 213 Start 213: Test_Sra_Info_Limit_Negative 213: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/runfailtest.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info" "--spot-layout DRR032985 --limit -1" "." 213: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 213: Test timeout computed to be: 1500 213: running 213: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --spot-layout DRR032985 --limit -1 1>./actual//stdout 2>./actual//stderr 114/426 Test #213: Test_Sra_Info_Limit_Negative ........................... Passed 0.09 sec test 214 Start 214: Test_Sra_Info_Limit_Zero 214: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/runfailtest.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info" "--spot-layout DRR032985 --limit 0" "." 214: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 214: Test timeout computed to be: 1500 214: running 214: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --spot-layout DRR032985 --limit 0 1>./actual//stdout 2>./actual//stderr 115/426 Test #214: Test_Sra_Info_Limit_Zero ............................... Passed 0.07 sec test 221 Start 221: Test_Sra_Info_Platform_Format_CSV 221: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f csv" "." "4.1" 221: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 221: Test timeout computed to be: 9000 221: running 4.1 221: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f csv 1>./actual/4.1/stdout 2>./actual/4.1/stderr 116/426 Test #221: Test_Sra_Info_Platform_Format_CSV ...................... Passed 0.16 sec test 222 Start 222: Test_Sra_Info_Platform_Format_XML 222: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f xml" "." "4.2" 222: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 222: Test timeout computed to be: 9000 222: running 4.2 222: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f xml 1>./actual/4.2/stdout 2>./actual/4.2/stderr 117/426 Test #222: Test_Sra_Info_Platform_Format_XML ...................... Passed 0.19 sec test 223 Start 223: Test_Sra_Info_Platform_Format_Json 223: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f json" "." "4.3" 223: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 223: Test timeout computed to be: 9000 223: running 4.3 223: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f json 1>./actual/4.3/stdout 2>./actual/4.3/stderr 118/426 Test #223: Test_Sra_Info_Platform_Format_Json ..................... Passed 0.19 sec test 224 Start 224: Test_Sra_Info_Platform_Format_Tab 224: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f tab" "." "4.4" 224: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 224: Test timeout computed to be: 9000 224: running 4.4 224: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f tab 1>./actual/4.4/stdout 2>./actual/4.4/stderr 119/426 Test #224: Test_Sra_Info_Platform_Format_Tab ...................... Passed 0.18 sec test 227 Start 227: Test_Sra_Info_Quality_Physical 227: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --quality ./input/MultiPlatform.sra" "." "6.1" 227: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 227: Test timeout computed to be: 9000 227: running 6.1 227: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --quality ./input/MultiPlatform.sra 1>./actual/6.1/stdout 2>./actual/6.1/stderr 120/426 Test #227: Test_Sra_Info_Quality_Physical ......................... Passed 0.18 sec test 242 Start 242: Test_Sra_Info_Schema_Default 242: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --schema input/MultiPlatform.sra" "." "9.0" 242: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 242: Test timeout computed to be: 9000 242: running 9.0 242: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --schema input/MultiPlatform.sra 1>./actual/9.0/stdout 2>./actual/9.0/stderr 121/426 Test #242: Test_Sra_Info_Schema_Default ........................... Passed 0.10 sec test 243 Start 243: Test_Sra_Info_Schema_Json 243: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --schema input/MultiPlatform.sra -fjson" "." "9.1" 243: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 243: Test timeout computed to be: 9000 243: running 9.1 243: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --schema input/MultiPlatform.sra -fjson 1>./actual/9.1/stdout 2>./actual/9.1/stderr 122/426 Test #243: Test_Sra_Info_Schema_Json .............................. Passed 0.16 sec test 244 Start 244: Test_Sra_Info_Schema_Xml 244: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --schema input/MultiPlatform.sra -fxml" "." "9.2" 244: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 244: Test timeout computed to be: 9000 244: running 9.2 244: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info --schema input/MultiPlatform.sra -fxml 1>./actual/9.2/stdout 2>./actual/9.2/stderr 123/426 Test #244: Test_Sra_Info_Schema_Xml ............................... Passed 0.16 sec test 245 Start 245: Test_Sra_Info_ACPQS_Default 245: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info input/MultiPlatform.sra -ACPQS" "." "10.0" 245: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 245: Test timeout computed to be: 9000 245: running 10.0 245: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info input/MultiPlatform.sra -ACPQS 1>./actual/10.0/stdout 2>./actual/10.0/stderr 124/426 Test #245: Test_Sra_Info_ACPQS_Default ............................ Passed 0.21 sec test 246 Start 246: Test_Sra_Info_ACPQS_Json 246: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info input/MultiPlatform.sra -ACPQS -fjson" "." "10.1" 246: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 246: Test timeout computed to be: 9000 246: running 10.1 246: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info input/MultiPlatform.sra -ACPQS -fjson 1>./actual/10.1/stdout 2>./actual/10.1/stderr 125/426 Test #246: Test_Sra_Info_ACPQS_Json ............................... Passed 0.22 sec test 247 Start 247: Test_Sra_Info_ACPQS_Xml 247: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info input/MultiPlatform.sra -ACPQS -fxml" "." "10.2" 247: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info 247: Test timeout computed to be: 9000 247: running 10.2 247: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sra-info input/MultiPlatform.sra -ACPQS -fxml 1>./actual/10.2/stdout 2>./actual/10.2/stderr 126/426 Test #247: Test_Sra_Info_ACPQS_Xml ................................ Passed 0.21 sec test 257 Start 257: BamTestSetup 257: Test command: /usr/bin/sh "-c" "echo 'vdb/schema/paths = "/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" /LIBS/GUID="8test002-6ab7-41b2-bfd0-bamfload"' > tmp.kfg" 257: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load 257: Test timeout computed to be: 1500 127/426 Test #257: BamTestSetup ........................................... Passed 0.00 sec test 258 Start 258: Test_BamLoader_1 258: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load" "sh" "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/bam-load -o out.sra test.sam" 258: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load 258: Test timeout computed to be: 1500 128/426 Test #258: Test_BamLoader_1 ....................................... Passed 0.36 sec test 259 Start 259: Test_BamLoader_MinBatchSize 259: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load" "sh" "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/bam-load -o out.sra --min-batch-size 999999 test.sam" 259: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load 259: Test timeout computed to be: 1500 129/426 Test #259: Test_BamLoader_MinBatchSize ............................ Passed 0.37 sec test 260 Start 260: Test_BamLoader_MinBatchSize_Bad 260: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load" "sh" "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/bam-load -o out.sra --min-batch-size notanumber test.sam" 260: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load 260: Test timeout computed to be: 1500 260: min-batch-size: bad value 260: Usage: 260: bam-load [options] 260: 260: Summary: 260: Load a BAM formatted data file 260: 260: Example: 260: bam-load -o /tmp/SRZ123456 -k analysis.bam.cfg 123456.bam 260: 260: 260: Use option --help for more information. 260: 260: 2026-01-18T06:00:15 bam-load.3.2.1 err: param incorrect while accessing argument list within application support module - load failed 130/426 Test #260: Test_BamLoader_MinBatchSize_Bad ........................ Passed 0.05 sec test 261 Start 261: Test_BamLoader_FewerThan3Threads 261: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load" "sh" "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/bam-load -o out.sra --threads=2 test.sam" 261: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load 261: Test timeout computed to be: 1500 261: threads: bad value (must be an integer >=3, or 0) 261: Usage: 261: bam-load [options] 261: 261: Summary: 261: Load a BAM formatted data file 261: 261: Example: 261: bam-load -o /tmp/SRZ123456 -k analysis.bam.cfg 123456.bam 261: 261: 261: Use option --help for more information. 261: 261: 2026-01-18T06:00:15 bam-load.3.2.1 err: param incorrect while accessing argument list within application support module - load failed 131/426 Test #261: Test_BamLoader_FewerThan3Threads ....................... Passed 0.05 sec test 262 Start 262: Test_BamLoader_ThreadsBad 262: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load" "sh" "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/bam-load -o out.sra --threads=N test.sam" 262: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load 262: Test timeout computed to be: 1500 262: threads: bad value (must be an integer >=3, or 0) 262: Usage: 262: bam-load [options] 262: 262: Summary: 262: Load a BAM formatted data file 262: 262: Example: 262: bam-load -o /tmp/SRZ123456 -k analysis.bam.cfg 123456.bam 262: 262: 262: Use option --help for more information. 262: 262: 2026-01-18T06:00:15 bam-load.3.2.1 err: param incorrect while accessing argument list within application support module - load failed 132/426 Test #262: Test_BamLoader_ThreadsBad .............................. Passed 0.06 sec test 263 Start 263: Test_BamLoader_platform 263: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_BamLoader_platform 263: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load 263: Test timeout computed to be: 1500 133/426 Test #263: Test_BamLoader_platform ................................ Passed 0.00 sec test 264 Start 264: LatfTestSetup 264: Test command: /usr/bin/sh "-c" "echo 'vdb/schema/paths = "/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" /LIBS/GUID="8test002-6ab7-41b2-bfd0-latfload"' > tmp.kfg" 264: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 264: Test timeout computed to be: 1500 134/426 Test #264: LatfTestSetup .......................................... Passed 0.00 sec test 265 Start 265: SlowTest_FastqLoader_id2name 265: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/SlowTest_FastqLoader_id2name 265: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 265: Test timeout computed to be: 1500 265: Running 12 test cases... 265: Init_NullSelf (0 s) 265: Whack_NullSelf (0 s) 265: Init_Whack (0 s) 265: Add_NullSelf (0 s) 265: Add_NullName (0 s) 265: Get_NullSelf (0 s) 265: Get_NullRes (0 s) 265: Get_Empty (0 s) 265: Get_Found (0 s) 265: Get_NotFound (0 s) 265: AddMultiple_Get (0 s) 265: AddRealloc (0 s) 265: 265: *** No errors detected (0 s total) 135/426 Test #265: SlowTest_FastqLoader_id2name ........................... Passed 0.02 sec test 266 Start 266: Test_FastqLoader_WbFastq_dflt 266: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_FastqLoader_WbFastq_dflt 266: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 266: Test timeout computed to be: 1500 266: Running 103 test cases... 266: EmptyFile (0 s) 266: EndLines (0 s) 266: SyntaxError1 (0 s) 266: SyntaxError2 (0 s) 266: RecoveryFromErrorAtTopLevel (0 s) 266: RecoveryFromErrorInHeader (0 s) 266: RecoveryFromErrorInRead (0 s) 266: RecoveryFromErrorInQuality (0 s) 266: ErrorLineNumber (0 s) 266: Tag1 (0 s) 266: Tag2_1 (0 s) 266: Tag2_2 (0 s) 266: Tag3 (0 s) 266: Tag4 (0 s) 266: Tag5 (0 s) 266: Tag6 (0 s) 266: Tag7 (0 s) 266: Tag8 (0 s) 266: Tag9 (0 s) 266: Tag10 (0 s) 266: Tag11 (0 s) 266: Tag12 (0 s) 266: Tag13 (0 s) 266: Tag14 (0 s) 266: Tag15 (0 s) 266: NotRejected (0 s) 266: SequenceNoAlignment (0 s) 266: TestSequenceGetReadLength (0 s) 266: TestSequenceGetReadLength_MultiLine (0 s) 266: TestSequenceGetRead (0 s) 266: TestSequenceGetRead_MultiLine (0 s) 266: TestSequenceGetRead2 (0 s) 266: TestSequenceGetRead2_StopOutOfRange (0 s) 266: TestSequenceGetRead2_StartOutOfRange (0 s) 266: TestSequenceGetRead2_MultiLine_InsideFirstLine (0 s) 266: TestSequenceGetRead2_MultiLine_InsideSecondLine (0 s) 266: TestSequenceGetRead2_MultiLine_AcrossEOL (0 s) 266: TestSequenceGetRead2_MultiLine_StopOutOfRange (0 s) 266: TestSequenceGetRead2_MultiLine_StartOutOfRange (0 s) 266: SequenceGetQuality33 (0 s) 266: SequenceGetQuality64 (0 s) 266: SequenceGetQualityLogOdds (0 s) 266: SequenceBaseSpace (0 s) 266: SequenceColorSpace (0 s) 266: SequenceGetOrientationIsReverse (0 s) 266: ReadNumber (0 s) 266: ReadNumberMissing (0 s) 266: ReadNumberDefault (0 s) 266: ReadNumberOverride (0 s) 266: RunSpotRead (0 s) 266: RunSpotRead_withTail (0 s) 266: RunSpotNothing (0 s) 266: SequenceGetSpotNameIllumina (0 s) 266: SequenceGetSpotGroupIllumina (0 s) 266: SequenceGetSpotGroupIllumina_Ignored (0 s) 266: SequenceGetSpotGroup_Empty (0 s) 266: SequenceGetSpotGroup_Zero (0 s) 266: SequenceGetSpotGroupBarcode (0 s) 266: SequenceGetSpotGroupBarcode_WithPluses (0 s) 266: SequenceGetSpotGroupUnderscore (0 s) 266: HashStyleBarcodeAndReadNumbersAndJunk (0 s) 266: SequenceWasPaired1 (0 s) 266: SequenceWasPaired2 (0 s) 266: SequenceWasPaired3 (0 s) 266: SequenceWasPaired4 (0 s) 266: SequenceWasPaired5 (0 s) 266: SequenceGetSpotNameOneLine (0 s) 266: SequenceGetNameNumeric (0 s) 266: GtStartsQualityOnly (0 s) 266: OneLineRead (0 s) 266: ForcePhredOffset (0 s) 266: IlluminaCasava_1_8 (0 s) 266: IlluminaCasava_1_8_SpotGroupNumber (0 s) 266: IlluminaCasava_1_8_SpotGroup_MoreMadness (0 s) 266: IlluminaCasava_1_8_EmptyTag (0 s) 266: Illumina_NegativeCoords (0 s) 266: Illumina_Underscore (0 s) 266: Illumina_IdentifierAtFront (0 s) 266: Illumina_SpaceAndIdentifierAtFront (0 s) 266: SRR1778155 (0 s) 266: SRA192487 (0 s) 266: NoEolAtEof (0 s) 266: GtStartsReadOnly (0 s) 266: Quality33TooLow (0 s) 266: Quality64TooLow (0 s) 266: QualityLogoddsTooLow (0 s) 266: DecimalQualityRejected (0 s) 266: PacbioRaw (0 s) 266: PacbioCcs (0 s) 266: PacbioNoReadNumbers (0 s) 266: PacbioWsCcs (0 s) 266: PacbioError (0 s) 266: NotPairedRead_Error (0 s) 266: NoFragmentInfo_Error (0 s) 266: NoColonAtTheEnd_Error (0 s) 266: MissingRead (0 s) 266: UnexpectedEOLreported (0 s) 266: AnotherUnexpectedEOLreported (0 s) 266: FastqDumpOutput (0 s) 266: Barcodes_Plus (0 s) 266: Barcodes_Underscore (0 s) 266: FastqMultiLineSequenceFasta (0 s) 266: FastqMultiLineSequenceFastq (0 s) 266: 266: *** No errors detected (0 s total) 136/426 Test #266: Test_FastqLoader_WbFastq_dflt .......................... Passed 0.06 sec test 267 Start 267: Test_FastqLoader_WbFastqParse 267: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_FastqLoader_WbFastqParse 267: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 267: Test timeout computed to be: 1500 267: Running 17 test cases... 267: EmptyInput (0 s) 267: TagLine1 (0 s) 267: SequenceQuality (0 s) 267: QualityOnly (0 s) 267: NoEOL_InQuality (0 s) 267: CRnoLF (0 s) 267: CommaSeparatedQuality3 (0 s) 267: WsBeforeEol (0 s) 267: SkipToEol (0 s) 267: InlineBaseSequence (0 s) 267: BufferBreakInTag (0 s) 267: BufferBreakInMultilineRead (0 s) 267: BufferBreakInMultilineQuality (0 s) 267: ReadNumberNotSeparated (0 s) 267: ReadNumberNotSeparated_Variation (0 s) 267: BarcodesReadNumbersJunkOhMy (0 s) 267: Aviti (0 s) 267: 267: *** No errors detected (0 s total) 137/426 Test #267: Test_FastqLoader_WbFastqParse .......................... Passed 0.01 sec test 268 Start 268: Test_FastqLoader_WbFastqLoader 268: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_FastqLoader_WbFastqLoader 268: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 268: Environment variables: 268: NCBI_SETTINGS=/ 268: VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 268: Test timeout computed to be: 1500 268: Running 14 test cases... 268: CommonWriterOneFile (0 s) 268: 2026-01-18T06:00:15 Test_FastqLoader_WbFastqLoader.1.0.0 err: data inconsistent while reading file within application support module - Duplicate read name 'HWUSI-EAS499:1:3:9:1822' 268: CommonWriterDuplicateReadnames_Error (0 s) 268: 2026-01-18T06:00:15 Test_FastqLoader_WbFastqLoader.1.0.0 warn: Spot 'HWUSI-EAS499:1:3:9:1822' has already been assigned a spot id 268: CommonWriterDuplicateReadnames_Allowed (0 s) 268: 2026-01-18T06:00:15 Test_FastqLoader_WbFastqLoader.1.0.0 err: data inconsistent while reading file within application support module - Duplicate read name 'HWUSI-EAS499:1:3:9:1822' 268: CommonWriterDuplicateReadnames_SameFragment (0 s) 268: CommonWriterDuplicateReadnames_DiffFragment (0 s) 268: 2026-01-18T06:00:15 Test_FastqLoader_WbFastqLoader.1.0.0 warn: data inconsistent while reading file within application support module - Spot 'HWUSI-EAS499:1:3:9:1822', which was first seen with mate info, now has no mate info 268: 2026-01-18T06:00:15 Test_FastqLoader_WbFastqLoader.1.0.0 err: data invalid while closing table - Too many bad records: records: 2, bad records: 1, bad records percentage: 0.50, allowed percentage: 0.00 268: CommonWriterDuplicateReadnames_MatedThenUnmated (0 s) 268: 2026-01-18T06:00:16 Test_FastqLoader_WbFastqLoader.1.0.0 warn: data inconsistent while reading file within application support module - Spot 'HWUSI-EAS499:1:3:9:1822', which was first seen without mate info, now has mate info 268: 2026-01-18T06:00:16 Test_FastqLoader_WbFastqLoader.1.0.0 err: data invalid while closing table - Too many bad records: records: 2, bad records: 1, bad records percentage: 0.50, allowed percentage: 0.00 268: CommonWriterDuplicateReadnames_UnmatedThenMated (0 s) 268: NoSpotAssemply (0 s) 268: NoSpotAssemply_case2 (0 s) 268: Interleaved_OneRead (0 s) 268: Interleaved_MultipleReads (0 s) 268: Interleaved_NoMatch (0 s) 268: Interleaved_1_longer (0 s) 268: Interleaved_2_longer (0 s) 268: 268: *** No errors detected (1 s total) 138/426 Test #268: Test_FastqLoader_WbFastqLoader ......................... Passed 1.47 sec test 269 Start 269: Test_FastqLoader_1.1 269: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/1.1.fastq --quality PHRED_33" "." "1.1" "0" 269: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 269: Test timeout computed to be: 1500 269: running 1.1 269: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/1.1.fastq --quality PHRED_33 -o ./actual/1.1/obj 1>./actual/1.1/load.stdout 2>./actual/1.1/load.stderr 139/426 Test #269: Test_FastqLoader_1.1 ................................... Passed 0.43 sec test 270 Start 270: Test_FastqLoader_1.2 270: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/1.2.fastq --quality PHRED_64" "." "1.2" "0" 270: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 270: Test timeout computed to be: 1500 270: running 1.2 270: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/1.2.fastq --quality PHRED_64 -o ./actual/1.2/obj 1>./actual/1.2/load.stdout 2>./actual/1.2/load.stderr 140/426 Test #270: Test_FastqLoader_1.2 ................................... Passed 0.44 sec test 271 Start 271: Test_FastqLoader_1.3 271: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/1.3.fastq --quality PHRED_33" "." "1.3" "3" 271: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 271: Test timeout computed to be: 1500 271: running 1.3 271: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/1.3.fastq --quality PHRED_33 -o ./actual/1.3/obj 1>./actual/1.3/load.stdout 2>./actual/1.3/load.stderr 141/426 Test #271: Test_FastqLoader_1.3 ................................... Passed 0.24 sec test 272 Start 272: Test_FastqLoader_1.4 272: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/1.4.fastq --quality LOGODDS" "." "1.4" "0" 272: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 272: Test timeout computed to be: 1500 272: running 1.4 272: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/1.4.fastq --quality LOGODDS -o ./actual/1.4/obj 1>./actual/1.4/load.stdout 2>./actual/1.4/load.stderr 142/426 Test #272: Test_FastqLoader_1.4 ................................... Passed 0.44 sec test 273 Start 273: Test_FastqLoader_2.1 273: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.1.fastq --quality PHRED_33" "." "2.1" "0" 273: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 273: Test timeout computed to be: 1500 273: running 2.1 273: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.1.fastq --quality PHRED_33 -o ./actual/2.1/obj 1>./actual/2.1/load.stdout 2>./actual/2.1/load.stderr 143/426 Test #273: Test_FastqLoader_2.1 ................................... Passed 0.44 sec test 274 Start 274: Test_FastqLoader_2.5 274: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.5.fastq --quality PHRED_33" "." "2.5" "0" 274: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 274: Test timeout computed to be: 1500 274: running 2.5 274: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.5.fastq --quality PHRED_33 -o ./actual/2.5/obj 1>./actual/2.5/load.stdout 2>./actual/2.5/load.stderr 144/426 Test #274: Test_FastqLoader_2.5 ................................... Passed 0.43 sec test 275 Start 275: Test_FastqLoader_2.6 275: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.6.fastq --quality PHRED_33" "." "2.6" "0" 275: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 275: Test timeout computed to be: 1500 275: running 2.6 275: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.6.fastq --quality PHRED_33 -o ./actual/2.6/obj 1>./actual/2.6/load.stdout 2>./actual/2.6/load.stderr 145/426 Test #275: Test_FastqLoader_2.6 ................................... Passed 0.43 sec test 276 Start 276: Test_FastqLoader_2.7 276: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.7.fastq --quality PHRED_33" "." "2.7" "3" 276: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 276: Test timeout computed to be: 1500 276: running 2.7 276: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.7.fastq --quality PHRED_33 -o ./actual/2.7/obj 1>./actual/2.7/load.stdout 2>./actual/2.7/load.stderr 146/426 Test #276: Test_FastqLoader_2.7 ................................... Passed 0.24 sec test 277 Start 277: Test_FastqLoader_2.7.1 277: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/2.7.fastq --quality PHRED_33 --allow_duplicates" "." "2.7.1" "0" 277: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 277: Test timeout computed to be: 1500 277: running 2.7.1 277: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/2.7.fastq --quality PHRED_33 --allow_duplicates -o ./actual/2.7.1/obj 1>./actual/2.7.1/load.stdout 2>./actual/2.7.1/load.stderr 147/426 Test #277: Test_FastqLoader_2.7.1 ................................. Passed 0.43 sec test 278 Start 278: Test_FastqLoader_2.8.1 278: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.8.1.fastq --quality PHRED_33" "." "2.8.1" "0" 278: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 278: Test timeout computed to be: 1500 278: running 2.8.1 278: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.8.1.fastq --quality PHRED_33 -o ./actual/2.8.1/obj 1>./actual/2.8.1/load.stdout 2>./actual/2.8.1/load.stderr 148/426 Test #278: Test_FastqLoader_2.8.1 ................................. Passed 0.45 sec test 279 Start 279: Test_FastqLoader_2.9 279: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.9.fastq --quality PHRED_33" "." "2.9" "3" 279: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 279: Test timeout computed to be: 1500 279: running 2.9 279: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.9.fastq --quality PHRED_33 -o ./actual/2.9/obj 1>./actual/2.9/load.stdout 2>./actual/2.9/load.stderr 149/426 Test #279: Test_FastqLoader_2.9 ................................... Passed 0.23 sec test 280 Start 280: Test_FastqLoader_2.9.1 280: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.9.1.fastq --quality PHRED_33" "." "2.9.1" "3" 280: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 280: Test timeout computed to be: 1500 280: running 2.9.1 280: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.9.1.fastq --quality PHRED_33 -o ./actual/2.9.1/obj 1>./actual/2.9.1/load.stdout 2>./actual/2.9.1/load.stderr 150/426 Test #280: Test_FastqLoader_2.9.1 ................................. Passed 0.24 sec test 281 Start 281: Test_FastqLoader_3.1 281: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/3.1a.fastq input/3.1b.fastq --quality PHRED_33" "." "3.1" "0" 281: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 281: Test timeout computed to be: 1500 281: running 3.1 281: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/3.1a.fastq input/3.1b.fastq --quality PHRED_33 -o ./actual/3.1/obj 1>./actual/3.1/load.stdout 2>./actual/3.1/load.stderr 151/426 Test #281: Test_FastqLoader_3.1 ................................... Passed 0.45 sec test 282 Start 282: Test_FastqLoader_4.1 282: Test command: /usr/bin/cmake "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load ./input/4.fastq --tmpfs ./actual -v -o actual/4.1.obj --quality PHRED_33 2>&1 | grep "Path for scratch files: ./actual/key2id"" 282: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 282: Test timeout computed to be: 1500 282: 2026-01-18T06:00:22 latf-load.3.2.1: Path for scratch files: ./actual/key2id.9790.1 152/426 Test #282: Test_FastqLoader_4.1 ................................... Passed 0.24 sec test 283 Start 283: Test_FastqLoader_4.2 283: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/4.fastq --qual-quant 1:10,10:20,20:30,30:- --quality PHRED_33" "." "4.2" "0" 283: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 283: Test timeout computed to be: 1500 283: running 4.2 283: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/4.fastq --qual-quant 1:10,10:20,20:30,30:- --quality PHRED_33 -o ./actual/4.2/obj 1>./actual/4.2/load.stdout 2>./actual/4.2/load.stderr 153/426 Test #283: Test_FastqLoader_4.2 ................................... Passed 0.37 sec test 284 Start 284: Test_FastqLoader_4.3.1 284: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/4.fastq --cache-size BIG --quality PHRED_33" "." "4.3.1" "3" 284: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 284: Test timeout computed to be: 1500 284: running 4.3.1 284: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/4.fastq --cache-size BIG --quality PHRED_33 -o ./actual/4.3.1/obj 1>./actual/4.3.1/load.stdout 2>./actual/4.3.1/load.stderr 154/426 Test #284: Test_FastqLoader_4.3.1 ................................. Passed 0.07 sec test 285 Start 285: Test_FastqLoader_4.5 285: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/4.5.fastq --max-err-count 2 --quality PHRED_33" "." "4.5" "3" 285: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 285: Test timeout computed to be: 1500 285: running 4.5 285: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/4.5.fastq --max-err-count 2 --quality PHRED_33 -o ./actual/4.5/obj 1>./actual/4.5/load.stdout 2>./actual/4.5/load.stderr 155/426 Test #285: Test_FastqLoader_4.5 ................................... Passed 0.23 sec test 286 Start 286: Test_FastqLoader_4.5.2 286: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/4.5.2.fastq --platform ILLUMINA --quality PHRED_33 --max-err-count 2" "." "4.5.2" "3" 286: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 286: Test timeout computed to be: 1500 286: running 4.5.2 286: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/4.5.2.fastq --platform ILLUMINA --quality PHRED_33 --max-err-count 2 -o ./actual/4.5.2/obj 1>./actual/4.5.2/load.stdout 2>./actual/4.5.2/load.stderr 156/426 Test #286: Test_FastqLoader_4.5.2 ................................. Passed 0.24 sec test 287 Start 287: Test_FastqLoader_4.6 287: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/4.fastq -p LS454 --quality PHRED_33" "." "4.6" "0" 287: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 287: Test timeout computed to be: 1500 287: running 4.6 287: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/4.fastq -p LS454 --quality PHRED_33 -o ./actual/4.6/obj 1>./actual/4.6/load.stdout 2>./actual/4.6/load.stderr 157/426 Test #287: Test_FastqLoader_4.6 ................................... Passed 0.42 sec test 288 Start 288: Test_FastqLoader_4.6.1 288: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/4.fastq -p SOMETHINGELSE --quality PHRED_33" "." "4.6.1" "3" 288: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 288: Test timeout computed to be: 1500 288: running 4.6.1 288: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/4.fastq -p SOMETHINGELSE --quality PHRED_33 -o ./actual/4.6.1/obj 1>./actual/4.6.1/load.stdout 2>./actual/4.6.1/load.stderr 158/426 Test #288: Test_FastqLoader_4.6.1 ................................. Passed 0.08 sec test 289 Start 289: Test_FastqLoader_4.7 289: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/not_there --quality PHRED_33" "." "4.7" "3" 289: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 289: Test timeout computed to be: 1500 289: running 4.7 289: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/not_there --quality PHRED_33 -o ./actual/4.7/obj 1>./actual/4.7/load.stdout 2>./actual/4.7/load.stderr 159/426 Test #289: Test_FastqLoader_4.7 ................................... Passed 0.18 sec test 290 Start 290: Test_FastqLoader_4.8 290: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/4.8.fastq --quality PHRED_33 --no-readnames" "." "4.8" "0" 290: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 290: Test timeout computed to be: 1500 290: running 4.8 290: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/4.8.fastq --quality PHRED_33 --no-readnames -o ./actual/4.8/obj 1>./actual/4.8/load.stdout 2>./actual/4.8/load.stderr 160/426 Test #290: Test_FastqLoader_4.8 ................................... Passed 0.43 sec test 291 Start 291: Test_FastqLoader_5.0 291: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/5.0.fastq.gz --quality PHRED_33" "." "5.0" "0" 291: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 291: Test timeout computed to be: 1500 291: running 5.0 291: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/5.0.fastq.gz --quality PHRED_33 -o ./actual/5.0/obj 1>./actual/5.0/load.stdout 2>./actual/5.0/load.stderr 161/426 Test #291: Test_FastqLoader_5.0 ................................... Passed 0.43 sec test 292 Start 292: Test_FastqLoader_6.0 292: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/6.0.fastq --quality PHRED_33" "." "6.0" "0" 292: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 292: Test timeout computed to be: 1500 292: running 6.0 292: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/6.0.fastq --quality PHRED_33 -o ./actual/6.0/obj 1>./actual/6.0/load.stdout 2>./actual/6.0/load.stderr 162/426 Test #292: Test_FastqLoader_6.0 ................................... Passed 0.44 sec test 293 Start 293: Test_FastqLoader_7.1 293: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/7.1.fastq --platform=PACBIO --quality PHRED_33" "." "7.1" "0" 293: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 293: Test timeout computed to be: 1500 293: running 7.1 293: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/7.1.fastq --platform=PACBIO --quality PHRED_33 -o ./actual/7.1/obj 1>./actual/7.1/load.stdout 2>./actual/7.1/load.stderr 163/426 Test #293: Test_FastqLoader_7.1 ................................... Passed 0.45 sec test 294 Start 294: Test_FastqLoader_7.2 294: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/7.2.fastq --platform=PACBIO --quality PHRED_33" "." "7.2" "0" 294: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 294: Test timeout computed to be: 1500 294: running 7.2 294: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/7.2.fastq --platform=PACBIO --quality PHRED_33 -o ./actual/7.2/obj 1>./actual/7.2/load.stdout 2>./actual/7.2/load.stderr 164/426 Test #294: Test_FastqLoader_7.2 ................................... Passed 0.44 sec test 295 Start 295: Test_FastqLoader_7.3 295: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/7.3.fastq --platform=PACBIO --quality PHRED_33" "." "7.3" "0" 295: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 295: Test timeout computed to be: 1500 295: running 7.3 295: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/7.3.fastq --platform=PACBIO --quality PHRED_33 -o ./actual/7.3/obj 1>./actual/7.3/load.stdout 2>./actual/7.3/load.stderr 165/426 Test #295: Test_FastqLoader_7.3 ................................... Passed 0.45 sec test 296 Start 296: Test_FastqLoader_8.0 296: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/8.0.fastq --quality PHRED_33" "." "8.0" "0" 296: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 296: Test timeout computed to be: 1500 296: running 8.0 296: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/8.0.fastq --quality PHRED_33 -o ./actual/8.0/obj 1>./actual/8.0/load.stdout 2>./actual/8.0/load.stderr 166/426 Test #296: Test_FastqLoader_8.0 ................................... Passed 0.43 sec test 297 Start 297: Test_FastqLoader_8.1 297: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/8.1.fastq --quality PHRED_33" "." "8.1" "3" 297: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 297: Test timeout computed to be: 1500 297: running 8.1 297: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/8.1.fastq --quality PHRED_33 -o ./actual/8.1/obj 1>./actual/8.1/load.stdout 2>./actual/8.1/load.stderr 167/426 Test #297: Test_FastqLoader_8.1 ................................... Passed 0.24 sec test 298 Start 298: Test_FastqLoader_9.0 298: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/9.0.fastq --quality PHRED_33" "." "9.0" "0" 298: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 298: Test timeout computed to be: 1500 298: running 9.0 298: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/9.0.fastq --quality PHRED_33 -o ./actual/9.0/obj 1>./actual/9.0/load.stdout 2>./actual/9.0/load.stderr 168/426 Test #298: Test_FastqLoader_9.0 ................................... Passed 0.44 sec test 299 Start 299: Test_FastqLoader_10.0 299: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/10.0.fastq --quality PHRED_33" "." "10.0" "0" 299: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 299: Test timeout computed to be: 1500 299: running 10.0 299: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/10.0.fastq --quality PHRED_33 -o ./actual/10.0/obj 1>./actual/10.0/load.stdout 2>./actual/10.0/load.stderr 169/426 Test #299: Test_FastqLoader_10.0 .................................. Passed 0.44 sec test 300 Start 300: Test_FastqLoader_11.0 300: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/11.0.1.fasta input/11.0.2.fasta --quality PHRED_33" "." "11.0" "0" 300: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 300: Test timeout computed to be: 1500 300: running 11.0 300: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/11.0.1.fasta input/11.0.2.fasta --quality PHRED_33 -o ./actual/11.0/obj 1>./actual/11.0/load.stdout 2>./actual/11.0/load.stderr 170/426 Test #300: Test_FastqLoader_11.0 .................................. Passed 0.44 sec test 301 Start 301: Test_FastqLoader_11.1 301: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/11.1.1.fastq input/11.1.2.fastq --quality PHRED_33" "." "11.1" "0" 301: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 301: Test timeout computed to be: 1500 301: running 11.1 301: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/11.1.1.fastq input/11.1.2.fastq --quality PHRED_33 -o ./actual/11.1/obj 1>./actual/11.1/load.stdout 2>./actual/11.1/load.stderr 171/426 Test #301: Test_FastqLoader_11.1 .................................. Passed 0.42 sec test 302 Start 302: Test_FastqLoader_12.0 302: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/12.0.fastq --quality PHRED_33 --ignore-illumina-tags" "." "12.0" "0" 302: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 302: Test timeout computed to be: 1500 302: running 12.0 302: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/12.0.fastq --quality PHRED_33 --ignore-illumina-tags -o ./actual/12.0/obj 1>./actual/12.0/load.stdout 2>./actual/12.0/load.stderr 172/426 Test #302: Test_FastqLoader_12.0 .................................. Passed 0.43 sec test 303 Start 303: Test_FastqLoader_12.1 303: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/12.1.fastq --quality PHRED_33" "." "12.1" "0" 303: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 303: Test timeout computed to be: 1500 303: running 12.1 303: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/12.1.fastq --quality PHRED_33 -o ./actual/12.1/obj 1>./actual/12.1/load.stdout 2>./actual/12.1/load.stderr 173/426 Test #303: Test_FastqLoader_12.1 .................................. Passed 0.44 sec test 304 Start 304: Test_FastqLoader_12.2 304: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/12.2.fastq --quality PHRED_33" "." "12.2" "0" 304: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 304: Test timeout computed to be: 1500 304: running 12.2 304: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/12.2.fastq --quality PHRED_33 -o ./actual/12.2/obj 1>./actual/12.2/load.stdout 2>./actual/12.2/load.stderr 174/426 Test #304: Test_FastqLoader_12.2 .................................. Passed 0.43 sec test 305 Start 305: Test_FastqLoader_13.0 305: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/13.0.fastq --quality PHRED_33" "." "13.0" "0" 305: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 305: Test timeout computed to be: 1500 305: running 13.0 305: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/13.0.fastq --quality PHRED_33 -o ./actual/13.0/obj 1>./actual/13.0/load.stdout 2>./actual/13.0/load.stderr 175/426 Test #305: Test_FastqLoader_13.0 .................................. Passed 0.42 sec test 306 Start 306: Test_FastqLoader_13.1 306: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/13.1.fastq --quality PHRED_33" "." "13.1" "0" 306: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 306: Test timeout computed to be: 1500 306: running 13.1 306: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/13.1.fastq --quality PHRED_33 -o ./actual/13.1/obj 1>./actual/13.1/load.stdout 2>./actual/13.1/load.stderr 176/426 Test #306: Test_FastqLoader_13.1 .................................. Passed 0.43 sec test 307 Start 307: Test_FastqLoader_14.0 307: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/14.0.fasta --quality PHRED_33" "." "14.0" "0" 307: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 307: Test timeout computed to be: 1500 307: running 14.0 307: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/14.0.fasta --quality PHRED_33 -o ./actual/14.0/obj 1>./actual/14.0/load.stdout 2>./actual/14.0/load.stderr 177/426 Test #307: Test_FastqLoader_14.0 .................................. Passed 0.43 sec test 308 Start 308: Test_FastqLoader_15.0 308: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump -x READ_SEG" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load ./input/15.0.fastq --quality PHRED_33" "." "15.0" "0" 308: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 308: Test timeout computed to be: 1500 308: running 15.0 308: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load ./input/15.0.fastq --quality PHRED_33 -o ./actual/15.0/obj 1>./actual/15.0/load.stdout 2>./actual/15.0/load.stderr 178/426 Test #308: Test_FastqLoader_15.0 .................................. Passed 0.61 sec test 309 Start 309: Test_FastqLoader_16.0 309: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/16.0.fasta --quality PHRED_33 --platform=PACBIO" "." "16.0" "0" 309: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 309: Test timeout computed to be: 1500 309: running 16.0 309: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/16.0.fasta --quality PHRED_33 --platform=PACBIO -o ./actual/16.0/obj 1>./actual/16.0/load.stdout 2>./actual/16.0/load.stderr 179/426 Test #309: Test_FastqLoader_16.0 .................................. Passed 0.43 sec test 310 Start 310: Test_FastqLoader_16.1 310: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/16.1.fastq --quality PHRED_33 --platform=PACBIO" "." "16.1" "0" 310: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 310: Test timeout computed to be: 1500 310: running 16.1 310: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load input/16.1.fastq --quality PHRED_33 --platform=PACBIO -o ./actual/16.1/obj 1>./actual/16.1/load.stdout 2>./actual/16.1/load.stderr 180/426 Test #310: Test_FastqLoader_16.1 .................................. Passed 0.44 sec test 311 Start 311: Test_FastqLoader_17.0 311: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/17.0.fastq --quality PHRED_33" "." "17.0" "3" 311: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 311: Test timeout computed to be: 1500 311: running 17.0 311: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/17.0.fastq --quality PHRED_33 -o ./actual/17.0/obj 1>./actual/17.0/load.stdout 2>./actual/17.0/load.stderr 181/426 Test #311: Test_FastqLoader_17.0 .................................. Passed 0.22 sec test 312 Start 312: Test_FastqLoader_18.0 312: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "runtestcase.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-dump " "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/18.0.fastq --quality PHRED_33" "." "18.0" "3" 312: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 312: Test timeout computed to be: 1500 312: running 18.0 312: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/18.0.fastq --quality PHRED_33 -o ./actual/18.0/obj 1>./actual/18.0/load.stdout 2>./actual/18.0/load.stderr 182/426 Test #312: Test_FastqLoader_18.0 .................................. Passed 0.24 sec test 314 Start 314: Test_KAPP_qfile 314: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_KAPP_qfile 314: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader 314: Test timeout computed to be: 1500 314: start-position : 0 314: queue-size : 1024 314: block-size : 0 314: chunk-size : 1024 183/426 Test #314: Test_KAPP_qfile ........................................ Passed 0.01 sec test 315 Start 315: Test_LOADERFILE 315: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_LOADERFILE 315: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader 315: Test timeout computed to be: 1500 315: Running 5 test cases... 315: KQueueFile_ReadTimeout_FGsleeps (2 s) 315: KQueueFile_ReadTimeout_BGsleeps (3 s) 315: KQueueFile_WriteTimeout (2 s) 315: KLoaderFile_eolBeforeEof (0 s) 315: KLoaderFile_noEolBeforeEof (0 s) 315: 315: *** No errors detected (7 s total) 184/426 Test #315: Test_LOADERFILE ........................................ Passed 7.01 sec test 316 Start 316: Test_LOADER 316: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_LOADER 316: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader 316: Test timeout computed to be: 1500 316: Running 2 test cases... 316: LoaderMeta_Write (0 s) 316: LoaderMeta_WriteWithVersion (0 s) 316: 316: *** No errors detected (0 s total) 185/426 Test #316: Test_LOADER ............................................ Passed 0.08 sec test 317 Start 317: Test_regexpr 317: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/test-regexpr 317: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 317: Test timeout computed to be: 1500 317: Running 4 test cases... 317: Construction (0 s) 317: LastInput (0 s) 317: NoMatch (0 s) 317: YesMatch (0 s) 317: 317: *** No errors detected (0 s total) 186/426 Test #317: Test_regexpr ........................................... Passed 0.01 sec test 318 Start 318: Test_sharq_reader 318: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/test-sharq-reader 318: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 318: Test timeout computed to be: 1500 318: Running 111 test cases... 318: SplitString (0 s) 318: SplitStringPiece (0 s) 318: EmptyFile (0 s) 318: EndLines (0 s) 318: InvalidDefline (0 s) 318: InvalidDeflineError (0 s) 318: GoodRead (0 s) 318: GoodReadFollowedByJunk (0 s) 318: MultiLineRead (0 s) 318: NoLastLF (0 s) 318: InvalidSequence (0 s) 318: EmptyQuality (0 s) 318: EmptyQualityAtTheEnd (0 s) 318: EmptyQuality2 (0 s) 318: TestSequence (0 s) 318: TestFingerprint (0 s) 318: TestSequence_Multi (0 s) 318: UridineTranslation (0 s) 318: IlluminaNew1 (0 s) 318: IlluminaNew2 (0 s) 318: IlluminaNew3 (0 s) 318: IlluminaNew4 (0 s) 318: IlluminaNew5 (0 s) 318: IlluminaNew6 (0 s) 318: IlluminaNew7 (0 s) 318: IlluminaNew8 (0 s) 318: IlluminaNew9 (0 s) 318: IlluminaNew10 (0 s) 318: IlluminaNew11 (0 s) 318: IlluminaNew12 (0 s) 318: IlluminaNew13 (0 s) 318: IlluminaNew14 (0 s) 318: IlluminaNew15 (0 s) 318: IlluminaNew16 (0 s) 318: IlluminaNew17 (0 s) 318: IlluminaNew18 (0 s) 318: IlluminaNew19 (0 s) 318: IlluminaNew20 (0 s) 318: IlluminaNew21 (0 s) 318: IlluminaNew22 (0 s) 318: IonTorrent2 (0 s) 318: IlluminaNewDataGroup1 (0 s) 318: BGI1 (0 s) 318: BGI2 (0 s) 318: BGI3 (0 s) 318: BGIOld1 (0 s) 318: BgiOld8 (0 s) 318: BgiNewd8 (0 s) 318: IlluminaNoPrefix (0 s) 318: SequenceGetSpotGroupBarcode (0 s) 318: BarCode_Plus (0 s) 318: BarCode_Underscore (0 s) 318: NoColonAtTheEnd_Error (0 s) 318: SequenceGetSpotGroupUnderscore (0 s) 318: RetainIlluminaSuffix (0 s) 318: RetainBgiSuffix (0 s) 318: Test_get_next_spot_empty (0 s) 318: Test_get_next_spot (0 s) 318: Test_get_next_spot_multi_2 (0 s) 318: Test_get_next_spot_multi_1 (0 s) 318: Test_get_spot_empty (0 s) 318: Test_get_spot_no_match (0 s) 318: Test_get_spot_no_match2 (0 s) 318: Test_get_spot_match (0 s) 318: Test_get_spot_match_multi (0 s) 318: Test_get_spot_match_multi_skip (0 s) 318: Test_get_spot_match_multi_skip_2 (0 s) 318: IlluminaCasava_1_8 (0 s) 318: IlluminaCasava_1_8_SpotGroupNumber (0 s) 318: IlluminaCasava_1_8_SpotGroup_MoreMadness (0 s) 318: IlluminaCasava_1_8_EmptyTag (0 s) 318: Illumina_Underscore (0 s) 318: SRA192487 (0 s) 318: BgiNew8Digit (0 s) 318: Quality33TooLow (0 s) 318: Quality33Adjusteed (0 s) 318: Quality64TooLow (0 s) 318: Quality64Adjusted (0 s) 318: [2026-01-18 06:00:40.579] [warning] [code:130] Read DG7PMJN1:293:D12THACXX:2:1101:1161:1968: quality score length exceeds sequence length 318: TextQualityTruncated (0 s) 318: TextQualityAccepted (0 s) 318: TextQualityAdjusted (0 s) 318: [2026-01-18 06:00:40.584] [warning] [code:130] Read DG7PMJN1:293:D12THACXX:2:1101:1161:1968: quality score length exceeds sequence length 318: QualityTooLongTruncated (0 s) 318: Aviti (0 s) 318: Nanopore1_readno_early (0 s) 318: Nanopore1_readno_late (0 s) 318: Nanopore2 (0 s) 318: Nanopore3 (0 s) 318: Nanopore3_1 (0 s) 318: Nanopore4 (0 s) 318: Nanopore4_WithBarcode (0 s) 318: Nanopore4_WithBarcodeUnclassified (0 s) 318: Nanopore4_EmptyChannel (0 s) 318: Nanopore5 (0 s) 318: Nanopore_DefaultReadno (0 s) 318: Nanopore_ReadNoIsAFile (0 s) 318: Nanopore_ReadFilter_Default (0 s) 318: Nanopore_ReadFilter_Pass (0 s) 318: Nanopore_ReadFilter_Fail (0 s) 318: Nanopore_Barcode_BC (0 s) 318: Nanopore_Barcode_Edit (0 s) 318: LS454_1 (0 s) 318: LS454_2 (0 s) 318: LS454_3 (0 s) 318: LS454_4 (0 s) 318: LS454_5 (0 s) 318: LS454_6 (0 s) 318: IonTorrent, case 0: @A313D:7:49 318: IonTorrent, case 1: @RD4FE:00027:00172 318: IonTorrent, case 2: @ONBWR:00329:02356/1 318: IonTorrent, case 3: >311CX:3560:2667 length=347 318: IonTorrent, case 4: @SEDCJ:00674:05781 1:N:0:AAAAA 318: IonTorrent, case 5: @ONBWR:00329:02356#GGTCATTT+TAGGTATG/2 318: IonTorrentTests (0 s) 318: IlluminaOldColon, case 0: @HWIEAS210R_0014:3:28:1070:11942#ATCCCG/1 318: IlluminaOldColon, case 1: @FCABM5A:1:1101:15563:1926#CTAGCGCT_CATTGCTT/1 318: IlluminaOldColon, case 2: @HWI-ST1374:1:1101:1161:2060#0/1 318: IlluminaOldColon, case 3: @ID57_120908_30E4FAAXX:3:1:1772:953/1 318: IlluminaOldColon, case 4: @R1:1:221:197:649/1 318: IlluminaOldColon, case 5: @R16:8:1:0:1617#0/1 318: IlluminaOldColon, case 6: @rumen9533:0:0:0:5 318: IlluminaOldColon, case 7: @HWUSI-BETA8_3:7:1:-1:14 318: IlluminaOldColon, case 8: @IL10_334:1:1:4:606 318: IlluminaOldColon, case 9: @HWUSI-EAS517-74:3:1:1023:8178/1 ~ RGR:Uk6; 318: IlluminaOldColon, case 10: @FCC19K2ACXX:3:1101:1485:2170#/1 318: IlluminaOldColon, case 11: @AMS2007273_SHEN-MISEQ01:47:1:1:12958:1771:0:1#0 318: IlluminaOldColon, case 12: @AMS2007273_SHEN-MISEQ01:47:1:1:17538:1769:0:0#0 318: IlluminaOldColon, case 13: @120315_SN711_0193_BC0KW7ACXX:1:1101:1419:2074:1#0/1 318: IlluminaOldColon, case 14: HWI-ST155_0544:1:1:6804:2058#0/1 318: IlluminaOldColon, case 15: @HWI-ST225:626:C2Y82ACXX:3:1208:2931:82861_1 318: IlluminaOldColon, case 16: @D3LH75P1:1:1101:1054:2148:0 1:1 318: IlluminaOldColon, case 17: @HWI-ST225:626:C2Y82ACXX:3:1208:2222:82880_1 318: IlluminaOldColon, case 18: @FCA5PJ4:1:1101:14707:1407#GTAGTCGC_AGCTCGGT/1 318: IlluminaOldColon, case 19: @SOLEXA-GA02_1:1:1:0:106 318: IlluminaOldColon, case 20: @HWUSI-EAS499:1:3:9:1822#0/1 318: IlluminaOldColon, case 21: @BILLIEHOLIDAY_1_FC20F3DAAXX:8:2:342:540 318: IlluminaOldColon, case 22: >KN-930:1:1:653:356 318: IlluminaOldColon, case 23: USI-EAS50_1:6:1:392:881 318: IlluminaOldColon, case 24: @HWI-EAS299_2_30MNAAAXX:5:1:936:1505/1 318: IlluminaOldColon, case 25: @HWI-EAS-249:7:1:1:443/1 318: IlluminaOldColon, case 26: @HWI-EAS385_0086_FC:1:1:1239:943#0/1 318: IlluminaOldColon, case 27: @HWUSI-EAS613-R_0001:8:1:1020:14660#0/1 318: IlluminaOldColon, case 28: @ILLUMINA-D01686_0001:7:1:1028:14175#0/1 318: IlluminaOldColon, case 29: @741:6:1:1204:10747/1 318: IlluminaOldColon, case 30: @1920:1:1:1504:1082/1 318: IlluminaOldColon, case 31: @HWI-EAS397_0013:1:1:1083:11725#0/1 318: IlluminaOldColon, case 32: >HWI-EAS6_4_FC2010T:1:1:80:366 318: IlluminaOldColon, case 33: @NUTELLA_42A08AAXX:4:001:0003:0089/1 318: IlluminaOldColon, case 34: @R16:8:1:0:875#0/1 318: IlluminaOldColon, case 35: HWI-EAS102_1_30LWPAAXX:5:1:1456:776 318: IlluminaOldColon, case 36: @HWI-EAS390_30VGNAAXX1:1:1:377:1113/1 318: IlluminaOldColon, case 37: @ID57_120908_30E4FAAXX:3:1:1772:953/1 318: IlluminaOldColon, case 38: HWI-EAS440_102:8:1:168:1332 318: IlluminaOldColon, case 39: @SNPSTER4_246_30GCDAAXX_PE:1:1:3:896/1 318: IlluminaOldColon, case 40: @FC42AUBAAXX:6:1:4:1280#TGACCA/1 318: IlluminaOldColon, case 41: @SOLEXA9:1:1:1:2005#0/1 318: IlluminaOldColon, case 42: @SNPSTER3_264_30JGGAAXX_PE:2:1:218:311/1 318: IlluminaOldColon, case 43: @HWUSI-EAS535_0001:7:1:747:14018#0/1 318: IlluminaOldColon, case 44: @FC42ATTAAXX:5:1:0:20481 318: IlluminaOldColon, case 45: @HWUSI-EAS1571_0012:8:1:1017:20197#0/1 318: IlluminaOldColon, case 46: @SOLEXA1_0052_FC:8:1:1508:1078#TTAGGC/1 318: IlluminaOldColon, case 47: @SN971:2:1101:15.80:103.70#0/1 318: IlluminaOldUnderscore, case 0: @HWI-EAS30_2_FC200HWAAXX_4_1_646_399 318: IlluminaOldUnderscore, case 1: @ATGCT_7_1101_1418_2098_1 318: IlluminaOldUnderscore, case 2: @BILLIEHOLIDAY_1_FC200TYAAXX_3_1_751_675 318: IlluminaOldUnderscore, case 3: @HWI-EAS30_2_FC20416AAXX_7_1_116_317 318: IlluminaOldUnderscore, case 4: @FC12044_91407_8_1_46_673 318: IlluminaOldNoPrefix, case 0: @7:1:792:533 318: IlluminaOldNoPrefix, case 1: @7:1:164:-0 318: IlluminaOldNoPrefix, case 2: @MB27-02-1:1101:1723:2171 /1 318: IlluminaOldWithSuffix, case 0: @HWI-IT879:92:5:1101:1170:2026#0/1:0 318: IlluminaOldWithSuffix2, case 0: >M01056:83:000000000-A7GBN:1:1108:17094:2684--W1 318: IlluminaOldTests (0 s) 318: PacBio, case 0: @m120525_202528_42132_c100323432550000001523017609061234_s1_p0/43 318: PacBio, case 1: @m101111_134728_richard_c000027022550000000115022502211150_s1_p0/1 318: PacBio, case 2: @m110115_082846_Uni_c000000000000000000000012706400001_s3_p0/1/0_508 318: PacBio, case 3: @m130727_043304_42150_c100538232550000001823086511101337_s1_p0/16/0_5273 318: PacBio, case 4: @m120328_022709_00128_c100311312550000001523011808061260_s1_p0/129/0_4701 318: PacBio, case 5: @m120204_011539_00128_c100220982555400000315052304111230_s2_p0/8/0_1446 318: PacBio2, case 6: @m54261_181223_050738_4194378 318: PacBio2, case 7: @m64049_200827_171349/2/ccs 318: PacBio2, case 8: @m54336U_191028_160945/1/120989_128438 318: PacBioTests (0 s) 318: illuminaOldBcRnOnly (0 s) 318: illuminaOldBcOnly (0 s) 318: 318: *** No errors detected (0 s total) 187/426 Test #318: Test_sharq_reader ...................................... Passed 0.34 sec test 319 Start 319: Test_sharq_parser 319: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/test-sharq-parser 319: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 319: Test timeout computed to be: 1500 319: Running 1 test case... 319: [2026-01-18 06:00:40.776] [info] Parsing from 2 files 319: [2026-01-18 06:00:41.077] [parser_logger] [info] spots: 0, reads: 0 319: TestSequence (0 s) 319: 319: *** No errors detected (0 s total) 188/426 Test #319: Test_sharq_parser ...................................... Passed 0.32 sec test 320 Start 320: Test_sharq_writer 320: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/test-sharq-writer 320: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 320: Test timeout computed to be: 1500 320: Running 8 test cases... 320: Construct (0 s) 320: SetAttr (0 s) 320: Destination (0 s) 320: DefaultSchema (0 s) 320: IlluminaSchema (0 s) 320: NanoporeSchema (0 s) 320: NanoporeSpecificColumns (0 s) 320: Fingerprinting (0 s) 320: 320: *** No errors detected (0 s total) 189/426 Test #320: Test_sharq_writer ...................................... Passed 0.01 sec test 321 Start 321: Test_001.read.supported 321: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.supported" "0" "0" "--debug" "--no-timestamp" "input/001.R1.fastq" 321: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 321: Test timeout computed to be: 1500 321: running 001.read.supported 321: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/001.R1.fastq 1>./actual/001.read.supported/load.stdout 2>./actual/001.read.supported/load.stderr 190/426 Test #321: Test_001.read.supported ................................ Passed 0.26 sec test 322 Start 322: Test_001.read.supported-sa-hot 322: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.supported-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly input/001.R1.fastq" 322: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 322: Test timeout computed to be: 1500 322: running 001.read.supported-sa-hot 322: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/001.R1.fastq 1>./actual/001.read.supported-sa-hot/load.stdout 2>./actual/001.read.supported-sa-hot/load.stderr 191/426 Test #322: Test_001.read.supported-sa-hot ......................... Passed 0.47 sec test 323 Start 323: Test_001.read.supported-sa-cold 323: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.supported-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 input/001.R1.fastq" 323: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 323: Test timeout computed to be: 1500 323: running 001.read.supported-sa-cold 323: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/001.R1.fastq 1>./actual/001.read.supported-sa-cold/load.stdout 2>./actual/001.read.supported-sa-cold/load.stderr 192/426 Test #323: Test_001.read.supported-sa-cold ........................ Passed 0.37 sec test 324 Start 324: Test_001.read.unsupported 324: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.unsupported" "1" "0" "--debug" "--no-timestamp" "--max-err-count 0 input/001.read.unsupported.fq" 324: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 324: Test timeout computed to be: 1500 324: running 001.read.unsupported 324: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.unsupported.fq 1>./actual/001.read.unsupported/load.stdout 2>./actual/001.read.unsupported/load.stderr 193/426 Test #324: Test_001.read.unsupported .............................. Passed 0.04 sec test 325 Start 325: Test_001.read.unsupported-sa-hot 325: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.unsupported-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 0 input/001.read.unsupported.fq" 325: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 325: Test timeout computed to be: 1500 325: running 001.read.unsupported-sa-hot 325: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.unsupported.fq 1>./actual/001.read.unsupported-sa-hot/load.stdout 2>./actual/001.read.unsupported-sa-hot/load.stderr 194/426 Test #325: Test_001.read.unsupported-sa-hot ....................... Passed 0.05 sec test 326 Start 326: Test_001.read.unsupported-sa-cold 326: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.unsupported-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.unsupported.fq" 326: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 326: Test timeout computed to be: 1500 326: running 001.read.unsupported-sa-cold 326: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.unsupported.fq 1>./actual/001.read.unsupported-sa-cold/load.stdout 2>./actual/001.read.unsupported-sa-cold/load.stderr 195/426 Test #326: Test_001.read.unsupported-sa-cold ...................... Passed 0.05 sec test 327 Start 327: Test_001.read.no_sequence 327: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.no_sequence" "1" "0" "--debug" "--no-timestamp" "--max-err-count 0 input/001.read.no_sequence.fq" 327: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 327: Test timeout computed to be: 1500 327: running 001.read.no_sequence 327: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.no_sequence.fq 1>./actual/001.read.no_sequence/load.stdout 2>./actual/001.read.no_sequence/load.stderr 196/426 Test #327: Test_001.read.no_sequence .............................. Passed 0.04 sec test 328 Start 328: Test_001.read.no_sequence-sa-hot 328: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.no_sequence-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 0 input/001.read.no_sequence.fq" 328: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 328: Test timeout computed to be: 1500 328: running 001.read.no_sequence-sa-hot 328: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.no_sequence.fq 1>./actual/001.read.no_sequence-sa-hot/load.stdout 2>./actual/001.read.no_sequence-sa-hot/load.stderr 197/426 Test #328: Test_001.read.no_sequence-sa-hot ....................... Passed 0.05 sec test 329 Start 329: Test_001.read.no_sequence-sa-cold 329: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.no_sequence-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.no_sequence.fq" 329: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 329: Test timeout computed to be: 1500 329: running 001.read.no_sequence-sa-cold 329: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.no_sequence.fq 1>./actual/001.read.no_sequence-sa-cold/load.stdout 2>./actual/001.read.no_sequence-sa-cold/load.stderr 198/426 Test #329: Test_001.read.no_sequence-sa-cold ...................... Passed 0.04 sec test 330 Start 330: Test_001.read.invalid_sequence 330: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.invalid_sequence" "1" "0" "--debug" "--no-timestamp" "--max-err-count 0 input/001.read.invalid_sequence.fq" 330: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 330: Test timeout computed to be: 1500 330: running 001.read.invalid_sequence 330: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.invalid_sequence.fq 1>./actual/001.read.invalid_sequence/load.stdout 2>./actual/001.read.invalid_sequence/load.stderr 199/426 Test #330: Test_001.read.invalid_sequence ......................... Passed 0.04 sec test 331 Start 331: Test_001.read.invalid_sequence-sa-hot 331: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.invalid_sequence-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 0 input/001.read.invalid_sequence.fq" 331: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 331: Test timeout computed to be: 1500 331: running 001.read.invalid_sequence-sa-hot 331: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.invalid_sequence.fq 1>./actual/001.read.invalid_sequence-sa-hot/load.stdout 2>./actual/001.read.invalid_sequence-sa-hot/load.stderr 200/426 Test #331: Test_001.read.invalid_sequence-sa-hot .................. Passed 0.04 sec test 332 Start 332: Test_001.read.invalid_sequence-sa-cold 332: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.invalid_sequence-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.invalid_sequence.fq" 332: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 332: Test timeout computed to be: 1500 332: running 001.read.invalid_sequence-sa-cold 332: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.invalid_sequence.fq 1>./actual/001.read.invalid_sequence-sa-cold/load.stdout 2>./actual/001.read.invalid_sequence-sa-cold/load.stderr 201/426 Test #332: Test_001.read.invalid_sequence-sa-cold ................. Passed 0.04 sec test 333 Start 333: Test_001.read.no_quality 333: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.no_quality" "1" "0" "--debug" "--no-timestamp" "--max-err-count 0 input/001.read.no_quality.fq" 333: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 333: Test timeout computed to be: 1500 333: running 001.read.no_quality 333: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.no_quality.fq 1>./actual/001.read.no_quality/load.stdout 2>./actual/001.read.no_quality/load.stderr 202/426 Test #333: Test_001.read.no_quality ............................... Passed 0.04 sec test 334 Start 334: Test_001.read.no_quality-sa-hot 334: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.no_quality-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 0 input/001.read.no_quality.fq" 334: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 334: Test timeout computed to be: 1500 334: running 001.read.no_quality-sa-hot 334: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.no_quality.fq 1>./actual/001.read.no_quality-sa-hot/load.stdout 2>./actual/001.read.no_quality-sa-hot/load.stderr 203/426 Test #334: Test_001.read.no_quality-sa-hot ........................ Passed 0.04 sec test 335 Start 335: Test_001.read.no_quality-sa-cold 335: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.no_quality-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.no_quality.fq" 335: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 335: Test timeout computed to be: 1500 335: running 001.read.no_quality-sa-cold 335: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.no_quality.fq 1>./actual/001.read.no_quality-sa-cold/load.stdout 2>./actual/001.read.no_quality-sa-cold/load.stderr 204/426 Test #335: Test_001.read.no_quality-sa-cold ....................... Passed 0.05 sec test 336 Start 336: Test_001.read.no_quality_2 336: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.no_quality_2" "1" "0" "--debug" "--no-timestamp" "--max-err-count 0 input/001.read.no_quality_2.fq" 336: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 336: Test timeout computed to be: 1500 336: running 001.read.no_quality_2 336: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.no_quality_2.fq 1>./actual/001.read.no_quality_2/load.stdout 2>./actual/001.read.no_quality_2/load.stderr 205/426 Test #336: Test_001.read.no_quality_2 ............................. Passed 0.04 sec test 337 Start 337: Test_001.read.no_quality_2-sa-hot 337: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.no_quality_2-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 0 input/001.read.no_quality_2.fq" 337: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 337: Test timeout computed to be: 1500 337: running 001.read.no_quality_2-sa-hot 337: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.no_quality_2.fq 1>./actual/001.read.no_quality_2-sa-hot/load.stdout 2>./actual/001.read.no_quality_2-sa-hot/load.stderr 206/426 Test #337: Test_001.read.no_quality_2-sa-hot ...................... Passed 0.04 sec test 338 Start 338: Test_001.read.no_quality_2-sa-cold 338: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.no_quality_2-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.no_quality_2.fq" 338: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 338: Test timeout computed to be: 1500 338: running 001.read.no_quality_2-sa-cold 338: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.no_quality_2.fq 1>./actual/001.read.no_quality_2-sa-cold/load.stdout 2>./actual/001.read.no_quality_2-sa-cold/load.stderr 207/426 Test #338: Test_001.read.no_quality_2-sa-cold ..................... Passed 0.04 sec test 339 Start 339: Test_001.read.invalid_quality33 339: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.invalid_quality33" "1" "0" "--debug" "--no-timestamp" "--max-err-count 0 --quality=33 input/001.read.invalid_quality33.fq" 339: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 339: Test timeout computed to be: 1500 339: running 001.read.invalid_quality33 339: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 --quality=33 input/001.read.invalid_quality33.fq 1>./actual/001.read.invalid_quality33/load.stdout 2>./actual/001.read.invalid_quality33/load.stderr 208/426 Test #339: Test_001.read.invalid_quality33 ........................ Passed 0.04 sec test 340 Start 340: Test_001.read.invalid_quality33-sa-hot 340: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.invalid_quality33-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 0 --quality=33 input/001.read.invalid_quality33.fq" 340: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 340: Test timeout computed to be: 1500 340: running 001.read.invalid_quality33-sa-hot 340: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 --quality=33 input/001.read.invalid_quality33.fq 1>./actual/001.read.invalid_quality33-sa-hot/load.stdout 2>./actual/001.read.invalid_quality33-sa-hot/load.stderr 209/426 Test #340: Test_001.read.invalid_quality33-sa-hot ................. Passed 0.04 sec test 341 Start 341: Test_001.read.invalid_quality33-sa-cold 341: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.invalid_quality33-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 0 --quality=33 input/001.read.invalid_quality33.fq" 341: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 341: Test timeout computed to be: 1500 341: running 001.read.invalid_quality33-sa-cold 341: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 --quality=33 input/001.read.invalid_quality33.fq 1>./actual/001.read.invalid_quality33-sa-cold/load.stdout 2>./actual/001.read.invalid_quality33-sa-cold/load.stderr 210/426 Test #341: Test_001.read.invalid_quality33-sa-cold ................ Passed 0.04 sec test 342 Start 342: Test_001.read.invalid_quality64 342: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.invalid_quality64" "1" "0" "--debug" "--no-timestamp" "--max-err-count 0 --quality=64 input/001.read.invalid_quality64.fq" 342: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 342: Test timeout computed to be: 1500 342: running 001.read.invalid_quality64 342: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 --quality=64 input/001.read.invalid_quality64.fq 1>./actual/001.read.invalid_quality64/load.stdout 2>./actual/001.read.invalid_quality64/load.stderr 211/426 Test #342: Test_001.read.invalid_quality64 ........................ Passed 0.15 sec test 343 Start 343: Test_001.read.invalid_quality64-sa-hot 343: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.invalid_quality64-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 0 --quality=64 input/001.read.invalid_quality64.fq" 343: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 343: Test timeout computed to be: 1500 343: running 001.read.invalid_quality64-sa-hot 343: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 --quality=64 input/001.read.invalid_quality64.fq 1>./actual/001.read.invalid_quality64-sa-hot/load.stdout 2>./actual/001.read.invalid_quality64-sa-hot/load.stderr 212/426 Test #343: Test_001.read.invalid_quality64-sa-hot ................. Passed 0.15 sec test 344 Start 344: Test_001.read.invalid_quality64-sa-cold 344: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.invalid_quality64-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 0 --quality=64 input/001.read.invalid_quality64.fq" 344: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 344: Test timeout computed to be: 1500 344: running 001.read.invalid_quality64-sa-cold 344: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 --quality=64 input/001.read.invalid_quality64.fq 1>./actual/001.read.invalid_quality64-sa-cold/load.stdout 2>./actual/001.read.invalid_quality64-sa-cold/load.stderr 213/426 Test #344: Test_001.read.invalid_quality64-sa-cold ................ Passed 0.15 sec test 345 Start 345: Test_001.read.invalid_quality0 345: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.invalid_quality0" "1" "0" "--debug" "--no-timestamp" "--max-err-count 0 --quality=0 input/001.read.invalid_quality0.fq" 345: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 345: Test timeout computed to be: 1500 345: running 001.read.invalid_quality0 345: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 --quality=0 input/001.read.invalid_quality0.fq 1>./actual/001.read.invalid_quality0/load.stdout 2>./actual/001.read.invalid_quality0/load.stderr 214/426 Test #345: Test_001.read.invalid_quality0 ......................... Passed 0.04 sec test 346 Start 346: Test_001.read.invalid_quality0-sa-hot 346: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.invalid_quality0-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 0 --quality=0 input/001.read.invalid_quality0.fq" 346: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 346: Test timeout computed to be: 1500 346: running 001.read.invalid_quality0-sa-hot 346: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 --quality=0 input/001.read.invalid_quality0.fq 1>./actual/001.read.invalid_quality0-sa-hot/load.stdout 2>./actual/001.read.invalid_quality0-sa-hot/load.stderr 215/426 Test #346: Test_001.read.invalid_quality0-sa-hot .................. Passed 0.05 sec test 347 Start 347: Test_001.read.invalid_quality0-sa-cold 347: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.invalid_quality0-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 0 --quality=0 input/001.read.invalid_quality0.fq" 347: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 347: Test timeout computed to be: 1500 347: running 001.read.invalid_quality0-sa-cold 347: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 --quality=0 input/001.read.invalid_quality0.fq 1>./actual/001.read.invalid_quality0-sa-cold/load.stdout 2>./actual/001.read.invalid_quality0-sa-cold/load.stderr 216/426 Test #347: Test_001.read.invalid_quality0-sa-cold ................. Passed 0.04 sec test 348 Start 348: Test_001.read.long_quality 348: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.long_quality" "0" "0" "--debug" "--no-timestamp" "--max-err-count 0 input/001.read.long_quality.fq" 348: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 348: Test timeout computed to be: 1500 348: running 001.read.long_quality 348: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.long_quality.fq 1>./actual/001.read.long_quality/load.stdout 2>./actual/001.read.long_quality/load.stderr 217/426 Test #348: Test_001.read.long_quality ............................. Passed 0.25 sec test 349 Start 349: Test_001.read.long_quality-sa-hot 349: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.long_quality-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 0 input/001.read.long_quality.fq" 349: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 349: Test timeout computed to be: 1500 349: running 001.read.long_quality-sa-hot 349: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.long_quality.fq 1>./actual/001.read.long_quality-sa-hot/load.stdout 2>./actual/001.read.long_quality-sa-hot/load.stderr 218/426 Test #349: Test_001.read.long_quality-sa-hot ...................... Passed 0.27 sec test 350 Start 350: Test_001.read.long_quality-sa-cold 350: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.long_quality-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.long_quality.fq" 350: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 350: Test timeout computed to be: 1500 350: running 001.read.long_quality-sa-cold 350: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.long_quality.fq 1>./actual/001.read.long_quality-sa-cold/load.stdout 2>./actual/001.read.long_quality-sa-cold/load.stderr 219/426 Test #350: Test_001.read.long_quality-sa-cold ..................... Passed 0.47 sec test 351 Start 351: Test_001.read.bad_quality0 351: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.bad_quality0" "1" "0" "--debug" "--no-timestamp" "--max-err-count 0 input/001.read.bad_quality0.fq" 351: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 351: Test timeout computed to be: 1500 351: running 001.read.bad_quality0 351: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.bad_quality0.fq 1>./actual/001.read.bad_quality0/load.stdout 2>./actual/001.read.bad_quality0/load.stderr 220/426 Test #351: Test_001.read.bad_quality0 ............................. Passed 0.05 sec test 352 Start 352: Test_001.read.bad_quality0-sa-hot 352: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.bad_quality0-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 0 input/001.read.bad_quality0.fq" 352: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 352: Test timeout computed to be: 1500 352: running 001.read.bad_quality0-sa-hot 352: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.bad_quality0.fq 1>./actual/001.read.bad_quality0-sa-hot/load.stdout 2>./actual/001.read.bad_quality0-sa-hot/load.stderr 221/426 Test #352: Test_001.read.bad_quality0-sa-hot ...................... Passed 0.05 sec test 353 Start 353: Test_001.read.bad_quality0-sa-cold 353: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.bad_quality0-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.bad_quality0.fq" 353: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 353: Test timeout computed to be: 1500 353: running 001.read.bad_quality0-sa-cold 353: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.bad_quality0.fq 1>./actual/001.read.bad_quality0-sa-cold/load.stdout 2>./actual/001.read.bad_quality0-sa-cold/load.stderr 222/426 Test #353: Test_001.read.bad_quality0-sa-cold ..................... Passed 0.05 sec test 354 Start 354: Test_001.read.bad_quality33 354: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.bad_quality33" "1" "0" "--debug" "--no-timestamp" "--max-err-count 0 input/001.read.bad_quality33.fq" 354: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 354: Test timeout computed to be: 1500 354: running 001.read.bad_quality33 354: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.bad_quality33.fq 1>./actual/001.read.bad_quality33/load.stdout 2>./actual/001.read.bad_quality33/load.stderr 223/426 Test #354: Test_001.read.bad_quality33 ............................ Passed 0.03 sec test 355 Start 355: Test_001.read.bad_quality33-sa-hot 355: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.bad_quality33-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 0 input/001.read.bad_quality33.fq" 355: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 355: Test timeout computed to be: 1500 355: running 001.read.bad_quality33-sa-hot 355: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.bad_quality33.fq 1>./actual/001.read.bad_quality33-sa-hot/load.stdout 2>./actual/001.read.bad_quality33-sa-hot/load.stderr 224/426 Test #355: Test_001.read.bad_quality33-sa-hot ..................... Passed 0.04 sec test 356 Start 356: Test_001.read.bad_quality33-sa-cold 356: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "001.read.bad_quality33-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.bad_quality33.fq" 356: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 356: Test timeout computed to be: 1500 356: running 001.read.bad_quality33-sa-cold 356: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.bad_quality33.fq 1>./actual/001.read.bad_quality33-sa-cold/load.stdout 2>./actual/001.read.bad_quality33-sa-cold/load.stderr 225/426 Test #356: Test_001.read.bad_quality33-sa-cold .................... Passed 0.04 sec test 357 Start 357: Test_002.readTypes_default 357: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_default" "0" "0" "--debug" "--no-timestamp" "input/002.allBiological_1.fq input/002.allBiological_2.fq" 357: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 357: Test timeout computed to be: 1500 357: running 002.readTypes_default 357: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_default/load.stdout 2>./actual/002.readTypes_default/load.stderr 226/426 Test #357: Test_002.readTypes_default ............................. Passed 0.38 sec test 358 Start 358: Test_002.readTypes_default-sa-hot 358: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_default-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly input/002.allBiological_1.fq input/002.allBiological_2.fq" 358: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 358: Test timeout computed to be: 1500 358: running 002.readTypes_default-sa-hot 358: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_default-sa-hot/load.stdout 2>./actual/002.readTypes_default-sa-hot/load.stderr 227/426 Test #358: Test_002.readTypes_default-sa-hot ...................... Passed 0.59 sec test 359 Start 359: Test_002.readTypes_default-sa-cold 359: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_default-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 input/002.allBiological_1.fq input/002.allBiological_2.fq" 359: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 359: Test timeout computed to be: 1500 359: running 002.readTypes_default-sa-cold 359: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_default-sa-cold/load.stdout 2>./actual/002.readTypes_default-sa-cold/load.stderr 228/426 Test #359: Test_002.readTypes_default-sa-cold ..................... Passed 0.59 sec test 360 Start 360: Test_002.readTypes_technical 360: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_technical" "0" "0" "--debug" "--no-timestamp" "--readTypes=TT input/002.allBiological_1.fq input/002.allBiological_2.fq" 360: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 360: Test timeout computed to be: 1500 360: running 002.readTypes_technical 360: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=TT input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_technical/load.stdout 2>./actual/002.readTypes_technical/load.stderr 229/426 Test #360: Test_002.readTypes_technical ........................... Passed 0.38 sec test 361 Start 361: Test_002.readTypes_technical-sa-hot 361: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_technical-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --readTypes=TT input/002.allBiological_1.fq input/002.allBiological_2.fq" 361: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 361: Test timeout computed to be: 1500 361: running 002.readTypes_technical-sa-hot 361: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=TT input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_technical-sa-hot/load.stdout 2>./actual/002.readTypes_technical-sa-hot/load.stderr 230/426 Test #361: Test_002.readTypes_technical-sa-hot .................... Passed 0.59 sec test 362 Start 362: Test_002.readTypes_technical-sa-cold 362: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_technical-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --readTypes=TT input/002.allBiological_1.fq input/002.allBiological_2.fq" 362: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 362: Test timeout computed to be: 1500 362: running 002.readTypes_technical-sa-cold 362: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=TT input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_technical-sa-cold/load.stdout 2>./actual/002.readTypes_technical-sa-cold/load.stderr 231/426 Test #362: Test_002.readTypes_technical-sa-cold ................... Passed 0.59 sec test 363 Start 363: Test_002.readTypes_mixed 363: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_mixed" "0" "0" "--debug" "--no-timestamp" "--readTypes=TB input/002.allBiological_1.fq input/002.allBiological_2.fq" 363: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 363: Test timeout computed to be: 1500 363: running 002.readTypes_mixed 363: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=TB input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_mixed/load.stdout 2>./actual/002.readTypes_mixed/load.stderr 232/426 Test #363: Test_002.readTypes_mixed ............................... Passed 0.38 sec test 364 Start 364: Test_002.readTypes_mixed-sa-hot 364: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_mixed-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --readTypes=TB input/002.allBiological_1.fq input/002.allBiological_2.fq" 364: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 364: Test timeout computed to be: 1500 364: running 002.readTypes_mixed-sa-hot 364: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=TB input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_mixed-sa-hot/load.stdout 2>./actual/002.readTypes_mixed-sa-hot/load.stderr 233/426 Test #364: Test_002.readTypes_mixed-sa-hot ........................ Passed 0.69 sec test 365 Start 365: Test_002.readTypes_mixed-sa-cold 365: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_mixed-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --readTypes=TB input/002.allBiological_1.fq input/002.allBiological_2.fq" 365: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 365: Test timeout computed to be: 1500 365: running 002.readTypes_mixed-sa-cold 365: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=TB input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_mixed-sa-cold/load.stdout 2>./actual/002.readTypes_mixed-sa-cold/load.stderr 234/426 Test #365: Test_002.readTypes_mixed-sa-cold ....................... Passed 0.59 sec test 366 Start 366: Test_002.readTypes_missing 366: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_missing" "1" "0" "--debug" "--no-timestamp" "--read1PairFiles=input/001.R1.fastq" 366: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 366: Test timeout computed to be: 1500 366: running 002.readTypes_missing 366: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_missing/load.stdout 2>./actual/002.readTypes_missing/load.stderr 235/426 Test #366: Test_002.readTypes_missing ............................. Passed 0.04 sec test 367 Start 367: Test_002.readTypes_missing-sa-hot 367: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_missing-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --read1PairFiles=input/001.R1.fastq" 367: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 367: Test timeout computed to be: 1500 367: running 002.readTypes_missing-sa-hot 367: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_missing-sa-hot/load.stdout 2>./actual/002.readTypes_missing-sa-hot/load.stderr 236/426 Test #367: Test_002.readTypes_missing-sa-hot ...................... Passed 0.03 sec test 368 Start 368: Test_002.readTypes_missing-sa-cold 368: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_missing-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --read1PairFiles=input/001.R1.fastq" 368: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 368: Test timeout computed to be: 1500 368: running 002.readTypes_missing-sa-cold 368: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_missing-sa-cold/load.stdout 2>./actual/002.readTypes_missing-sa-cold/load.stderr 237/426 Test #368: Test_002.readTypes_missing-sa-cold ..................... Passed 0.04 sec test 369 Start 369: Test_002.readTypes_mismatch 369: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_mismatch" "1" "0" "--debug" "--no-timestamp" "--readTypes=TB --read1PairFiles=input/001.R1.fastq" 369: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 369: Test timeout computed to be: 1500 369: running 002.readTypes_mismatch 369: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=TB --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_mismatch/load.stdout 2>./actual/002.readTypes_mismatch/load.stderr 238/426 Test #369: Test_002.readTypes_mismatch ............................ Passed 0.05 sec test 370 Start 370: Test_002.readTypes_mismatch-sa-hot 370: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_mismatch-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --readTypes=TB --read1PairFiles=input/001.R1.fastq" 370: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 370: Test timeout computed to be: 1500 370: running 002.readTypes_mismatch-sa-hot 370: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=TB --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_mismatch-sa-hot/load.stdout 2>./actual/002.readTypes_mismatch-sa-hot/load.stderr 239/426 Test #370: Test_002.readTypes_mismatch-sa-hot ..................... Passed 0.08 sec test 371 Start 371: Test_002.readTypes_mismatch-sa-cold 371: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_mismatch-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --readTypes=TB --read1PairFiles=input/001.R1.fastq" 371: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 371: Test timeout computed to be: 1500 371: running 002.readTypes_mismatch-sa-cold 371: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=TB --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_mismatch-sa-cold/load.stdout 2>./actual/002.readTypes_mismatch-sa-cold/load.stderr 240/426 Test #371: Test_002.readTypes_mismatch-sa-cold .................... Passed 0.07 sec test 372 Start 372: Test_002.readTypes_unexpected 372: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_unexpected" "1" "0" "--debug" "--no-timestamp" "--readTypes=X --read1PairFiles=input/002.allBiological_1.fq" 372: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 372: Test timeout computed to be: 1500 372: running 002.readTypes_unexpected 372: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=X --read1PairFiles=input/002.allBiological_1.fq 1>./actual/002.readTypes_unexpected/load.stdout 2>./actual/002.readTypes_unexpected/load.stderr 241/426 Test #372: Test_002.readTypes_unexpected .......................... Passed 0.10 sec test 373 Start 373: Test_002.readTypes_unexpected-sa-hot 373: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_unexpected-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --readTypes=X --read1PairFiles=input/002.allBiological_1.fq" 373: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 373: Test timeout computed to be: 1500 373: running 002.readTypes_unexpected-sa-hot 373: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=X --read1PairFiles=input/002.allBiological_1.fq 1>./actual/002.readTypes_unexpected-sa-hot/load.stdout 2>./actual/002.readTypes_unexpected-sa-hot/load.stderr 242/426 Test #373: Test_002.readTypes_unexpected-sa-hot ................... Passed 0.04 sec test 374 Start 374: Test_002.readTypes_unexpected-sa-cold 374: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_unexpected-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --readTypes=X --read1PairFiles=input/002.allBiological_1.fq" 374: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 374: Test timeout computed to be: 1500 374: running 002.readTypes_unexpected-sa-cold 374: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=X --read1PairFiles=input/002.allBiological_1.fq 1>./actual/002.readTypes_unexpected-sa-cold/load.stdout 2>./actual/002.readTypes_unexpected-sa-cold/load.stderr 243/426 Test #374: Test_002.readTypes_unexpected-sa-cold .................. Passed 0.03 sec test 375 Start 375: Test_002.readTypes_interlaved_fail_1 375: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_interlaved_fail_1" "1" "0" "--debug" "--no-timestamp" "input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq" 375: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 375: Test timeout computed to be: 1500 375: running 002.readTypes_interlaved_fail_1 375: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_fail_1/load.stdout 2>./actual/002.readTypes_interlaved_fail_1/load.stderr 244/426 Test #375: Test_002.readTypes_interlaved_fail_1 ................... Passed 0.06 sec test 376 Start 376: Test_002.readTypes_interleaved_fail_4 376: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_interleaved_fail_4" "1" "0" "--debug" "--no-timestamp" "--readTypes=BB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq" 376: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 376: Test timeout computed to be: 1500 376: running 002.readTypes_interleaved_fail_4 376: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=BB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interleaved_fail_4/load.stdout 2>./actual/002.readTypes_interleaved_fail_4/load.stderr 245/426 Test #376: Test_002.readTypes_interleaved_fail_4 .................. Passed 0.06 sec test 377 Start 377: Test_002.readTypes_interlaved_fail_3-sa-hot 377: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_interlaved_fail_3-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq" 377: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 377: Test timeout computed to be: 1500 377: running 002.readTypes_interlaved_fail_3-sa-hot 377: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_fail_3-sa-hot/load.stdout 2>./actual/002.readTypes_interlaved_fail_3-sa-hot/load.stderr 246/426 Test #377: Test_002.readTypes_interlaved_fail_3-sa-hot ............ Passed 0.38 sec test 378 Start 378: Test_002.readTypes_interlaved_fail_3-sa-cold 378: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_interlaved_fail_3-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq" 378: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 378: Test timeout computed to be: 1500 378: running 002.readTypes_interlaved_fail_3-sa-cold 378: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_fail_3-sa-cold/load.stdout 2>./actual/002.readTypes_interlaved_fail_3-sa-cold/load.stderr 247/426 Test #378: Test_002.readTypes_interlaved_fail_3-sa-cold ........... Passed 0.38 sec test 379 Start 379: Test_002.readTypes_interlaved_fail_2-sa-hot 379: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_interlaved_fail_2-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --readTypes=BB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq" 379: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 379: Test timeout computed to be: 1500 379: running 002.readTypes_interlaved_fail_2-sa-hot 379: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=BB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_fail_2-sa-hot/load.stdout 2>./actual/002.readTypes_interlaved_fail_2-sa-hot/load.stderr 248/426 Test #379: Test_002.readTypes_interlaved_fail_2-sa-hot ............ Passed 0.36 sec test 380 Start 380: Test_002.readTypes_interlaved_fail_2-sa-cold 380: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_interlaved_fail_2-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --readTypes=BB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq" 380: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 380: Test timeout computed to be: 1500 380: running 002.readTypes_interlaved_fail_2-sa-cold 380: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=BB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_fail_2-sa-cold/load.stdout 2>./actual/002.readTypes_interlaved_fail_2-sa-cold/load.stderr 249/426 Test #380: Test_002.readTypes_interlaved_fail_2-sa-cold ........... Passed 0.38 sec test 381 Start 381: Test_002.readTypes_interlaved_pass 381: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_interlaved_pass" "0" "0" "--debug" "--no-timestamp" "--readTypes=BTB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq" 381: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 381: Test timeout computed to be: 1500 381: running 002.readTypes_interlaved_pass 381: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=BTB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_pass/load.stdout 2>./actual/002.readTypes_interlaved_pass/load.stderr 250/426 Test #381: Test_002.readTypes_interlaved_pass ..................... Passed 0.37 sec test 382 Start 382: Test_002.readTypes_interlaved_pass-sa-hot 382: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_interlaved_pass-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --readTypes=BTB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq" 382: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 382: Test timeout computed to be: 1500 382: running 002.readTypes_interlaved_pass-sa-hot 382: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=BTB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_pass-sa-hot/load.stdout 2>./actual/002.readTypes_interlaved_pass-sa-hot/load.stderr 251/426 Test #382: Test_002.readTypes_interlaved_pass-sa-hot .............. Passed 0.58 sec test 383 Start 383: Test_002.readTypes_interlaved_pass-sa-cold 383: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "002.readTypes_interlaved_pass-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --readTypes=BTB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq" 383: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 383: Test timeout computed to be: 1500 383: running 002.readTypes_interlaved_pass-sa-cold 383: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=BTB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_pass-sa-cold/load.stdout 2>./actual/002.readTypes_interlaved_pass-sa-cold/load.stderr 252/426 Test #383: Test_002.readTypes_interlaved_pass-sa-cold ............. Passed 0.68 sec test 384 Start 384: Test_003.files_not_exists 384: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_not_exists" "1" "0" "--debug" "--no-timestamp" "dummy1.fq" 384: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 384: Test timeout computed to be: 1500 384: running 003.files_not_exists 384: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp dummy1.fq 1>./actual/003.files_not_exists/load.stdout 2>./actual/003.files_not_exists/load.stderr 253/426 Test #384: Test_003.files_not_exists .............................. Passed 0.04 sec test 385 Start 385: Test_003.files_not_exists-sa-hot 385: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_not_exists-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly dummy1.fq" 385: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 385: Test timeout computed to be: 1500 385: running 003.files_not_exists-sa-hot 385: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly dummy1.fq 1>./actual/003.files_not_exists-sa-hot/load.stdout 2>./actual/003.files_not_exists-sa-hot/load.stderr 254/426 Test #385: Test_003.files_not_exists-sa-hot ....................... Passed 0.04 sec test 386 Start 386: Test_003.files_not_exists-sa-cold 386: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_not_exists-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 dummy1.fq" 386: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 386: Test timeout computed to be: 1500 386: running 003.files_not_exists-sa-cold 386: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 dummy1.fq 1>./actual/003.files_not_exists-sa-cold/load.stdout 2>./actual/003.files_not_exists-sa-cold/load.stderr 255/426 Test #386: Test_003.files_not_exists-sa-cold ...................... Passed 0.04 sec test 387 Start 387: Test_003.files_not_valid 387: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_not_valid" "1" "0" "--debug" "--no-timestamp" "input/003.empty.fq" 387: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 387: Test timeout computed to be: 1500 387: running 003.files_not_valid 387: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/003.empty.fq 1>./actual/003.files_not_valid/load.stdout 2>./actual/003.files_not_valid/load.stderr 256/426 Test #387: Test_003.files_not_valid ............................... Passed 0.06 sec test 388 Start 388: Test_003.files_not_valid-sa-hot 388: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_not_valid-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly input/003.empty.fq" 388: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 388: Test timeout computed to be: 1500 388: running 003.files_not_valid-sa-hot 388: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/003.empty.fq 1>./actual/003.files_not_valid-sa-hot/load.stdout 2>./actual/003.files_not_valid-sa-hot/load.stderr 257/426 Test #388: Test_003.files_not_valid-sa-hot ........................ Passed 0.06 sec test 389 Start 389: Test_003.files_not_valid-sa-cold 389: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_not_valid-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 input/003.empty.fq" 389: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 389: Test timeout computed to be: 1500 389: running 003.files_not_valid-sa-cold 389: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/003.empty.fq 1>./actual/003.files_not_valid-sa-cold/load.stdout 2>./actual/003.files_not_valid-sa-cold/load.stderr 258/426 Test #389: Test_003.files_not_valid-sa-cold ....................... Passed 0.06 sec test 390 Start 390: Test_003.files_readpairs 390: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_readpairs" "0" "0" "--debug" "--no-timestamp" "--readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq" 390: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 390: Test timeout computed to be: 1500 390: running 003.files_readpairs 390: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq 1>./actual/003.files_readpairs/load.stdout 2>./actual/003.files_readpairs/load.stderr 259/426 Test #390: Test_003.files_readpairs ............................... Passed 1.33 sec test 391 Start 391: Test_003.files_readpairs-sa-hot 391: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_readpairs-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq" 391: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 391: Test timeout computed to be: 1500 391: running 003.files_readpairs-sa-hot 391: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq 1>./actual/003.files_readpairs-sa-hot/load.stdout 2>./actual/003.files_readpairs-sa-hot/load.stderr 260/426 Test #391: Test_003.files_readpairs-sa-hot ........................ Passed 2.41 sec test 392 Start 392: Test_003.files_readpairs-sa-cold 392: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_readpairs-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq" 392: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 392: Test timeout computed to be: 1500 392: running 003.files_readpairs-sa-cold 392: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq 1>./actual/003.files_readpairs-sa-cold/load.stdout 2>./actual/003.files_readpairs-sa-cold/load.stderr 261/426 Test #392: Test_003.files_readpairs-sa-cold ....................... Passed 2.32 sec test 393 Start 393: Test_003.files_mixed 393: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_mixed" "1" "0" "--debug" "--no-timestamp" "input/005.offset0_1.fq input/001.R1.fastq" 393: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 393: Test timeout computed to be: 1500 393: running 003.files_mixed 393: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/005.offset0_1.fq input/001.R1.fastq 1>./actual/003.files_mixed/load.stdout 2>./actual/003.files_mixed/load.stderr 262/426 Test #393: Test_003.files_mixed ................................... Passed 0.07 sec test 394 Start 394: Test_003.files_mixed-sa-hot 394: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_mixed-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly input/005.offset0_1.fq input/001.R1.fastq" 394: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 394: Test timeout computed to be: 1500 394: running 003.files_mixed-sa-hot 394: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/005.offset0_1.fq input/001.R1.fastq 1>./actual/003.files_mixed-sa-hot/load.stdout 2>./actual/003.files_mixed-sa-hot/load.stderr 263/426 Test #394: Test_003.files_mixed-sa-hot ............................ Passed 0.05 sec test 395 Start 395: Test_003.files_mixed-sa-cold 395: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_mixed-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 input/005.offset0_1.fq input/001.R1.fastq" 395: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 395: Test timeout computed to be: 1500 395: running 003.files_mixed-sa-cold 395: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/005.offset0_1.fq input/001.R1.fastq 1>./actual/003.files_mixed-sa-cold/load.stdout 2>./actual/003.files_mixed-sa-cold/load.stderr 264/426 Test #395: Test_003.files_mixed-sa-cold ........................... Passed 0.05 sec test 396 Start 396: Test_003.files_mixed_cluster 396: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_mixed_cluster" "1" "0" "--debug" "--no-timestamp" "input/003.t_R1.fastq input/003.t_I1.fastq input/001.R1.fastq" 396: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 396: Test timeout computed to be: 1500 396: running 003.files_mixed_cluster 396: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/003.t_R1.fastq input/003.t_I1.fastq input/001.R1.fastq 1>./actual/003.files_mixed_cluster/load.stdout 2>./actual/003.files_mixed_cluster/load.stderr 265/426 Test #396: Test_003.files_mixed_cluster ........................... Passed 0.07 sec test 397 Start 397: Test_003.files_10x_mixed 397: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_10x_mixed" "1" "0" "--debug" "--no-timestamp" "input/003.t_I1.fastq input/003.t_R1.fastq input/003.t_R2.fastq input/003._I1.fastq input/003.R1.fastq input/003.R2.fastq" 397: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 397: Test timeout computed to be: 1500 397: running 003.files_10x_mixed 397: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/003.t_I1.fastq input/003.t_R1.fastq input/003.t_R2.fastq input/003._I1.fastq input/003.R1.fastq input/003.R2.fastq 1>./actual/003.files_10x_mixed/load.stdout 2>./actual/003.files_10x_mixed/load.stderr 266/426 Test #397: Test_003.files_10x_mixed ............................... Passed 0.11 sec test 398 Start 398: Test_003.files_10x_mixed-sa-hot 398: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_10x_mixed-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly input/003.t_I1.fastq input/003.t_R1.fastq input/003.t_R2.fastq input/003._I1.fastq input/003.R1.fastq input/003.R2.fastq" 398: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 398: Test timeout computed to be: 1500 398: running 003.files_10x_mixed-sa-hot 398: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/003.t_I1.fastq input/003.t_R1.fastq input/003.t_R2.fastq input/003._I1.fastq input/003.R1.fastq input/003.R2.fastq 1>./actual/003.files_10x_mixed-sa-hot/load.stdout 2>./actual/003.files_10x_mixed-sa-hot/load.stderr 267/426 Test #398: Test_003.files_10x_mixed-sa-hot ........................ Passed 0.07 sec test 399 Start 399: Test_003.files_10x_mixed-sa-cold 399: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.files_10x_mixed-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 input/003.t_I1.fastq input/003.t_R1.fastq input/003.t_R2.fastq input/003._I1.fastq input/003.R1.fastq input/003.R2.fastq" 399: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 399: Test timeout computed to be: 1500 399: running 003.files_10x_mixed-sa-cold 399: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/003.t_I1.fastq input/003.t_R1.fastq input/003.t_R2.fastq input/003._I1.fastq input/003.R1.fastq input/003.R2.fastq 1>./actual/003.files_10x_mixed-sa-cold/load.stdout 2>./actual/003.files_10x_mixed-sa-cold/load.stderr 268/426 Test #399: Test_003.files_10x_mixed-sa-cold ....................... Passed 0.07 sec test 400 Start 400: Test_003.readTypes_10x 400: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.readTypes_10x" "0" "0" "--debug" "--no-timestamp" "input/003.t_R1.fastq input/003.t_R1.fastq input/003.t_I1.fastq" 400: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 400: Test timeout computed to be: 1500 400: running 003.readTypes_10x 400: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/003.t_R1.fastq input/003.t_R1.fastq input/003.t_I1.fastq 1>./actual/003.readTypes_10x/load.stdout 2>./actual/003.readTypes_10x/load.stderr 269/426 Test #400: Test_003.readTypes_10x ................................. Passed 0.49 sec test 401 Start 401: Test_003.wrong_pairing 401: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.wrong_pairing" "1" "0" "--debug" "--no-timestamp" "--readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq" 401: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 401: Test timeout computed to be: 1500 401: running 003.wrong_pairing 401: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq 1>./actual/003.wrong_pairing/load.stdout 2>./actual/003.wrong_pairing/load.stderr 270/426 Test #401: Test_003.wrong_pairing ................................. Passed 0.04 sec test 402 Start 402: Test_003.wrong_pairing-sa-hot 402: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.wrong_pairing-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq" 402: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 402: Test timeout computed to be: 1500 402: running 003.wrong_pairing-sa-hot 402: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq 1>./actual/003.wrong_pairing-sa-hot/load.stdout 2>./actual/003.wrong_pairing-sa-hot/load.stderr 271/426 Test #402: Test_003.wrong_pairing-sa-hot .......................... Passed 0.04 sec test 403 Start 403: Test_003.wrong_pairing-sa-cold 403: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "003.wrong_pairing-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq" 403: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 403: Test timeout computed to be: 1500 403: running 003.wrong_pairing-sa-cold 403: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq 1>./actual/003.wrong_pairing-sa-cold/load.stdout 2>./actual/003.wrong_pairing-sa-cold/load.stderr 272/426 Test #403: Test_003.wrong_pairing-sa-cold ......................... Passed 0.04 sec test 404 Start 404: Test_004.truncated.fail 404: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "004.truncated.fail" "1" "0" "--debug" "--no-timestamp" "input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz" 404: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 404: Test timeout computed to be: 1500 404: running 004.truncated.fail 404: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz 1>./actual/004.truncated.fail/load.stdout 2>./actual/004.truncated.fail/load.stderr 273/426 Test #404: Test_004.truncated.fail ................................ Passed 0.71 sec test 405 Start 405: Test_004.truncated.pass 405: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "004.truncated.pass" "0" "0" "--debug" "--no-timestamp" "--allowEarlyFileEnd input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz" 405: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 405: Test timeout computed to be: 1500 405: running 004.truncated.pass 405: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --allowEarlyFileEnd input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz 1>./actual/004.truncated.pass/load.stdout 2>./actual/004.truncated.pass/load.stderr 274/426 Test #405: Test_004.truncated.pass ................................ Passed 0.84 sec test 406 Start 406: Test_004.truncated.pass-sa-hot 406: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "004.truncated.pass-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --allowEarlyFileEnd input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz" 406: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 406: Test timeout computed to be: 1500 406: running 004.truncated.pass-sa-hot 406: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --allowEarlyFileEnd input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz 1>./actual/004.truncated.pass-sa-hot/load.stdout 2>./actual/004.truncated.pass-sa-hot/load.stderr 275/426 Test #406: Test_004.truncated.pass-sa-hot ......................... Passed 1.51 sec test 407 Start 407: Test_004.truncated.pass-sa-cold 407: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "004.truncated.pass-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --allowEarlyFileEnd input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz" 407: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 407: Test timeout computed to be: 1500 407: running 004.truncated.pass-sa-cold 407: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --allowEarlyFileEnd input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz 1>./actual/004.truncated.pass-sa-cold/load.stdout 2>./actual/004.truncated.pass-sa-cold/load.stderr 276/426 Test #407: Test_004.truncated.pass-sa-cold ........................ Passed 1.50 sec test 408 Start 408: Test_005.offset0 408: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "005.offset0" "0" "0" "--debug" "--no-timestamp" "input/005.offset0_1.fq input/005.offset0_2.fq" 408: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 408: Test timeout computed to be: 1500 408: running 005.offset0 408: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/005.offset0_1.fq input/005.offset0_2.fq 1>./actual/005.offset0/load.stdout 2>./actual/005.offset0/load.stderr 277/426 Test #408: Test_005.offset0 ....................................... Passed 0.37 sec test 409 Start 409: Test_005.offset0-sa-hot 409: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "005.offset0-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly input/005.offset0_1.fq input/005.offset0_2.fq" 409: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 409: Test timeout computed to be: 1500 409: running 005.offset0-sa-hot 409: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/005.offset0_1.fq input/005.offset0_2.fq 1>./actual/005.offset0-sa-hot/load.stdout 2>./actual/005.offset0-sa-hot/load.stderr 278/426 Test #409: Test_005.offset0-sa-hot ................................ Passed 0.58 sec test 410 Start 410: Test_005.offset0-sa-cold 410: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "005.offset0-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 input/005.offset0_1.fq input/005.offset0_2.fq" 410: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 410: Test timeout computed to be: 1500 410: running 005.offset0-sa-cold 410: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/005.offset0_1.fq input/005.offset0_2.fq 1>./actual/005.offset0-sa-cold/load.stdout 2>./actual/005.offset0-sa-cold/load.stderr 279/426 Test #410: Test_005.offset0-sa-cold ............................... Passed 0.58 sec test 411 Start 411: Test_005.offset64 411: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "005.offset64" "0" "0" "--debug" "--no-timestamp" "input/005.offset64_1.fq input/005.offset64_2.fq" 411: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 411: Test timeout computed to be: 1500 411: running 005.offset64 411: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/005.offset64_1.fq input/005.offset64_2.fq 1>./actual/005.offset64/load.stdout 2>./actual/005.offset64/load.stderr 280/426 Test #411: Test_005.offset64 ...................................... Passed 0.37 sec test 412 Start 412: Test_005.offset64-sa-hot 412: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "005.offset64-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly input/005.offset64_1.fq input/005.offset64_2.fq" 412: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 412: Test timeout computed to be: 1500 412: running 005.offset64-sa-hot 412: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/005.offset64_1.fq input/005.offset64_2.fq 1>./actual/005.offset64-sa-hot/load.stdout 2>./actual/005.offset64-sa-hot/load.stderr 281/426 Test #412: Test_005.offset64-sa-hot ............................... Passed 0.58 sec test 413 Start 413: Test_005.offset64-sa-cold 413: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "005.offset64-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 input/005.offset64_1.fq input/005.offset64_2.fq" 413: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 413: Test timeout computed to be: 1500 413: running 005.offset64-sa-cold 413: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/005.offset64_1.fq input/005.offset64_2.fq 1>./actual/005.offset64-sa-cold/load.stdout 2>./actual/005.offset64-sa-cold/load.stderr 282/426 Test #413: Test_005.offset64-sa-cold .............................. Passed 0.68 sec test 414 Start 414: Test_006.duplicate 414: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "006.duplicate" "1" "0" "--debug" "--no-timestamp" "--max-err-count 0 input/006.duplicate.fq" 414: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 414: Test timeout computed to be: 1500 414: running 006.duplicate 414: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/006.duplicate.fq 1>./actual/006.duplicate/load.stdout 2>./actual/006.duplicate/load.stderr 283/426 Test #414: Test_006.duplicate ..................................... Passed 0.26 sec test 415 Start 415: Test_007.digest.udenfined 415: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "007.digest.udenfined" "0" "0" "--debug" "--no-timestamp" "--digest input/001.read.unsupported.fq" 415: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 415: Test timeout computed to be: 1500 415: running 007.digest.udenfined 415: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --digest input/001.read.unsupported.fq 1>./actual/007.digest.udenfined/load.stdout 2>./actual/007.digest.udenfined/load.stderr 284/426 Test #415: Test_007.digest.udenfined .............................. Passed 0.04 sec test 416 Start 416: Test_007.digest.udenfined-sa-hot 416: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "007.digest.udenfined-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --digest input/001.read.unsupported.fq" 416: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 416: Test timeout computed to be: 1500 416: running 007.digest.udenfined-sa-hot 416: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --digest input/001.read.unsupported.fq 1>./actual/007.digest.udenfined-sa-hot/load.stdout 2>./actual/007.digest.udenfined-sa-hot/load.stderr 285/426 Test #416: Test_007.digest.udenfined-sa-hot ....................... Passed 0.04 sec test 417 Start 417: Test_007.digest.udenfined-sa-cold 417: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "007.digest.udenfined-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --digest input/001.read.unsupported.fq" 417: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 417: Test timeout computed to be: 1500 417: running 007.digest.udenfined-sa-cold 417: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --digest input/001.read.unsupported.fq 1>./actual/007.digest.udenfined-sa-cold/load.stdout 2>./actual/007.digest.udenfined-sa-cold/load.stderr 286/426 Test #417: Test_007.digest.udenfined-sa-cold ...................... Passed 0.04 sec test 418 Start 418: Test_007.digest.multiple 418: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "007.digest.multiple" "0" "0" "--debug" "--no-timestamp" "--digest input/003.t_R1.fastq input/003.t_R1.fastq input/003.t_I1.fastq" 418: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 418: Test timeout computed to be: 1500 418: running 007.digest.multiple 418: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --digest input/003.t_R1.fastq input/003.t_R1.fastq input/003.t_I1.fastq 1>./actual/007.digest.multiple/load.stdout 2>./actual/007.digest.multiple/load.stderr 287/426 Test #418: Test_007.digest.multiple ............................... Passed 0.07 sec test 419 Start 419: Test_007.digest.multiple-sa-hot 419: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "007.digest.multiple-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --digest input/003.t_R1.fastq input/003.t_R1.fastq input/003.t_I1.fastq" 419: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 419: Test timeout computed to be: 1500 419: running 007.digest.multiple-sa-hot 419: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --digest input/003.t_R1.fastq input/003.t_R1.fastq input/003.t_I1.fastq 1>./actual/007.digest.multiple-sa-hot/load.stdout 2>./actual/007.digest.multiple-sa-hot/load.stderr 288/426 Test #419: Test_007.digest.multiple-sa-hot ........................ Passed 0.05 sec test 420 Start 420: Test_007.digest.multiple-sa-cold 420: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "007.digest.multiple-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --digest input/003.t_R1.fastq input/003.t_R1.fastq input/003.t_I1.fastq" 420: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 420: Test timeout computed to be: 1500 420: running 007.digest.multiple-sa-cold 420: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --digest input/003.t_R1.fastq input/003.t_R1.fastq input/003.t_I1.fastq 1>./actual/007.digest.multiple-sa-cold/load.stdout 2>./actual/007.digest.multiple-sa-cold/load.stderr 289/426 Test #420: Test_007.digest.multiple-sa-cold ....................... Passed 0.04 sec test 421 Start 421: Test_007.digest.groups 421: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "007.digest.groups" "0" "0" "--debug" "--no-timestamp" "--digest input/003.t_R1.fastq.gz input/003.t2_R1.fastq input/003.t3_R1.fastq input/003.t_R2.fastq.gz input/003.t2_R2.fastq input/003.t3_R2.fastq input/003.t_I1.fastq.gz input/003.t2_I1.fastq input/003.t3_I1.fastq" 421: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 421: Test timeout computed to be: 1500 421: running 007.digest.groups 421: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --digest input/003.t_R1.fastq.gz input/003.t2_R1.fastq input/003.t3_R1.fastq input/003.t_R2.fastq.gz input/003.t2_R2.fastq input/003.t3_R2.fastq input/003.t_I1.fastq.gz input/003.t2_I1.fastq input/003.t3_I1.fastq 1>./actual/007.digest.groups/load.stdout 2>./actual/007.digest.groups/load.stderr 290/426 Test #421: Test_007.digest.groups ................................. Passed 0.13 sec test 422 Start 422: Test_007.digest.error 422: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "007.digest.error" "0" "0" "--debug" "--no-timestamp" "--max-err-count 0 --digest input/001.read.invalid_quality0.fq" 422: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 422: Test timeout computed to be: 1500 422: running 007.digest.error 422: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 --digest input/001.read.invalid_quality0.fq 1>./actual/007.digest.error/load.stdout 2>./actual/007.digest.error/load.stderr 291/426 Test #422: Test_007.digest.error .................................. Passed 0.04 sec test 423 Start 423: Test_007.digest.error-sa-hot 423: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "007.digest.error-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 0 --digest input/001.read.invalid_quality0.fq" 423: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 423: Test timeout computed to be: 1500 423: running 007.digest.error-sa-hot 423: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 --digest input/001.read.invalid_quality0.fq 1>./actual/007.digest.error-sa-hot/load.stdout 2>./actual/007.digest.error-sa-hot/load.stderr 292/426 Test #423: Test_007.digest.error-sa-hot ........................... Passed 0.04 sec test 424 Start 424: Test_007.digest.error-sa-cold 424: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "007.digest.error-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 0 --digest input/001.read.invalid_quality0.fq" 424: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 424: Test timeout computed to be: 1500 424: running 007.digest.error-sa-cold 424: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 --digest input/001.read.invalid_quality0.fq 1>./actual/007.digest.error-sa-cold/load.stdout 2>./actual/007.digest.error-sa-cold/load.stderr 293/426 Test #424: Test_007.digest.error-sa-cold .......................... Passed 0.04 sec test 425 Start 425: Test_008.telemetry_pass 425: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "008.telemetry_pass" "0" "1" "--debug" "--no-timestamp" "--readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq" 425: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 425: Test timeout computed to be: 1500 425: running 008.telemetry_pass 425: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq -t ./actual/008.telemetry_pass/telemetry 1>./actual/008.telemetry_pass/load.stdout 2>./actual/008.telemetry_pass/load.stderr 294/426 Test #425: Test_008.telemetry_pass ................................ Passed 1.34 sec test 426 Start 426: Test_009.more_than_4_per_spot 426: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "009.more_than_4_per_spot" "1" "0" "--debug" "--no-timestamp" "--debug input/009.test_I1_001.fastq input/009.test_R1_001.fastq input/009.test_R2_001.fastq input/009.test_R3_001.fastq" 426: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 426: Test timeout computed to be: 1500 426: running 009.more_than_4_per_spot 426: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --debug input/009.test_I1_001.fastq input/009.test_R1_001.fastq input/009.test_R2_001.fastq input/009.test_R3_001.fastq 1>./actual/009.more_than_4_per_spot/load.stdout 2>./actual/009.more_than_4_per_spot/load.stderr 295/426 Test #426: Test_009.more_than_4_per_spot .......................... Passed 0.24 sec test 427 Start 427: Test_010.errors.invalid_seq_pass1 427: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "010.errors.invalid_seq_pass1" "0" "0" "--debug" "--no-timestamp" "input/010.errors.invalid_seq.fq" 427: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 427: Test timeout computed to be: 1500 427: running 010.errors.invalid_seq_pass1 427: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_pass1/load.stdout 2>./actual/010.errors.invalid_seq_pass1/load.stderr 296/426 Test #427: Test_010.errors.invalid_seq_pass1 ...................... Passed 0.26 sec test 428 Start 428: Test_010.errors.invalid_seq_pass1-sa-hot 428: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "010.errors.invalid_seq_pass1-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly input/010.errors.invalid_seq.fq" 428: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 428: Test timeout computed to be: 1500 428: running 010.errors.invalid_seq_pass1-sa-hot 428: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_pass1-sa-hot/load.stdout 2>./actual/010.errors.invalid_seq_pass1-sa-hot/load.stderr 297/426 Test #428: Test_010.errors.invalid_seq_pass1-sa-hot ............... Passed 0.37 sec test 429 Start 429: Test_010.errors.invalid_seq_pass1-sa-cold 429: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "010.errors.invalid_seq_pass1-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 input/010.errors.invalid_seq.fq" 429: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 429: Test timeout computed to be: 1500 429: running 010.errors.invalid_seq_pass1-sa-cold 429: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_pass1-sa-cold/load.stdout 2>./actual/010.errors.invalid_seq_pass1-sa-cold/load.stderr 298/426 Test #429: Test_010.errors.invalid_seq_pass1-sa-cold .............. Passed 0.37 sec test 430 Start 430: Test_010.errors.invalid_seq_pass2 430: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "010.errors.invalid_seq_pass2" "1" "0" "--debug" "--no-timestamp" "--max-err-count 3 input/010.errors.invalid_seq.fq" 430: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 430: Test timeout computed to be: 1500 430: running 010.errors.invalid_seq_pass2 430: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 3 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_pass2/load.stdout 2>./actual/010.errors.invalid_seq_pass2/load.stderr 299/426 Test #430: Test_010.errors.invalid_seq_pass2 ...................... Passed 0.04 sec test 431 Start 431: Test_010.errors.invalid_seq_pass2-sa-hot 431: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "010.errors.invalid_seq_pass2-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 3 input/010.errors.invalid_seq.fq" 431: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 431: Test timeout computed to be: 1500 431: running 010.errors.invalid_seq_pass2-sa-hot 431: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 3 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_pass2-sa-hot/load.stdout 2>./actual/010.errors.invalid_seq_pass2-sa-hot/load.stderr 300/426 Test #431: Test_010.errors.invalid_seq_pass2-sa-hot ............... Passed 0.05 sec test 432 Start 432: Test_010.errors.invalid_seq_pass2-sa-cold 432: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "010.errors.invalid_seq_pass2-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 3 input/010.errors.invalid_seq.fq" 432: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 432: Test timeout computed to be: 1500 432: running 010.errors.invalid_seq_pass2-sa-cold 432: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 3 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_pass2-sa-cold/load.stdout 2>./actual/010.errors.invalid_seq_pass2-sa-cold/load.stderr 301/426 Test #432: Test_010.errors.invalid_seq_pass2-sa-cold .............. Passed 0.05 sec test 433 Start 433: Test_010.errors.invalid_seq_fail 433: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "010.errors.invalid_seq_fail" "1" "0" "--debug" "--no-timestamp" "--max-err-count 3 input/010.errors.invalid_seq.fq" 433: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 433: Test timeout computed to be: 1500 433: running 010.errors.invalid_seq_fail 433: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 3 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_fail/load.stdout 2>./actual/010.errors.invalid_seq_fail/load.stderr 302/426 Test #433: Test_010.errors.invalid_seq_fail ....................... Passed 0.05 sec test 434 Start 434: Test_010.errors.invalid_seq_fail-sa-hot 434: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "010.errors.invalid_seq_fail-sa-hot" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 3 input/010.errors.invalid_seq.fq" 434: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 434: Test timeout computed to be: 1500 434: running 010.errors.invalid_seq_fail-sa-hot 434: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 3 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_fail-sa-hot/load.stdout 2>./actual/010.errors.invalid_seq_fail-sa-hot/load.stderr 303/426 Test #434: Test_010.errors.invalid_seq_fail-sa-hot ................ Passed 0.05 sec test 435 Start 435: Test_010.errors.invalid_seq_fail-sa-cold 435: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "010.errors.invalid_seq_fail-sa-cold" "1" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 3 input/010.errors.invalid_seq.fq" 435: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 435: Test timeout computed to be: 1500 435: running 010.errors.invalid_seq_fail-sa-cold 435: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 3 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_fail-sa-cold/load.stdout 2>./actual/010.errors.invalid_seq_fail-sa-cold/load.stderr 304/426 Test #435: Test_010.errors.invalid_seq_fail-sa-cold ............... Passed 0.04 sec test 436 Start 436: Test_011.nanopore.3 436: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "011.nanopore.3" "0" "0" "--debug" "--no-timestamp" "--max-err-count 0 input/011.nanopore.3.fq" 436: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 436: Test timeout computed to be: 1500 436: running 011.nanopore.3 436: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/011.nanopore.3.fq 1>./actual/011.nanopore.3/load.stdout 2>./actual/011.nanopore.3/load.stderr 305/426 Test #436: Test_011.nanopore.3 .................................... Passed 0.27 sec test 437 Start 437: Test_011.nanopore.3-sa-hot 437: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "011.nanopore.3-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 0 input/011.nanopore.3.fq" 437: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 437: Test timeout computed to be: 1500 437: running 011.nanopore.3-sa-hot 437: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/011.nanopore.3.fq 1>./actual/011.nanopore.3-sa-hot/load.stdout 2>./actual/011.nanopore.3-sa-hot/load.stderr 306/426 Test #437: Test_011.nanopore.3-sa-hot ............................. Passed 0.49 sec test 438 Start 438: Test_011.nanopore.3-sa-cold 438: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "011.nanopore.3-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/011.nanopore.3.fq" 438: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 438: Test timeout computed to be: 1500 438: running 011.nanopore.3-sa-cold 438: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/011.nanopore.3.fq 1>./actual/011.nanopore.3-sa-cold/load.stdout 2>./actual/011.nanopore.3-sa-cold/load.stderr 307/426 Test #438: Test_011.nanopore.3-sa-cold ............................ Passed 0.49 sec test 439 Start 439: Test_012.qualities 439: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "012.qualities" "0" "0" "--debug" "--no-timestamp" "--max-err-count 0 input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq" 439: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 439: Test timeout computed to be: 1500 439: running 012.qualities 439: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq 1>./actual/012.qualities/load.stdout 2>./actual/012.qualities/load.stderr 308/426 Test #439: Test_012.qualities ..................................... Passed 0.94 sec test 440 Start 440: Test_012.qualities-sa-hot 440: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "012.qualities-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 0 input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq" 440: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 440: Test timeout computed to be: 1500 440: running 012.qualities-sa-hot 440: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq 1>./actual/012.qualities-sa-hot/load.stdout 2>./actual/012.qualities-sa-hot/load.stderr 309/426 Test #440: Test_012.qualities-sa-hot .............................. Passed 1.55 sec test 441 Start 441: Test_012.qualities-sa-cold 441: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "012.qualities-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq" 441: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 441: Test timeout computed to be: 1500 441: running 012.qualities-sa-cold 441: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq 1>./actual/012.qualities-sa-cold/load.stdout 2>./actual/012.qualities-sa-cold/load.stderr 310/426 Test #441: Test_012.qualities-sa-cold ............................. Passed 1.36 sec test 442 Start 442: Test_012.qualities_with_types-sa-hot 442: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "012.qualities_with_types-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --readTypes=TTB input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq" 442: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 442: Test timeout computed to be: 1500 442: running 012.qualities_with_types-sa-hot 442: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=TTB input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq 1>./actual/012.qualities_with_types-sa-hot/load.stdout 2>./actual/012.qualities_with_types-sa-hot/load.stderr 311/426 Test #442: Test_012.qualities_with_types-sa-hot ................... Passed 1.54 sec test 443 Start 443: Test_012.qualities_with_types-sa-cold 443: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "012.qualities_with_types-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --readTypes=TTB input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq" 443: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 443: Test timeout computed to be: 1500 443: running 012.qualities_with_types-sa-cold 443: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=TTB input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq 1>./actual/012.qualities_with_types-sa-cold/load.stdout 2>./actual/012.qualities_with_types-sa-cold/load.stderr 312/426 Test #443: Test_012.qualities_with_types-sa-cold .................. Passed 1.44 sec test 444 Start 444: Test_013.no-reads 444: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "013.no-reads" "0" "0" "--debug" "--no-timestamp" "--max-err-count 0 input/013.t_I1.fastq input/013.t_I2.fastq input/013.t_R1.fastq input/013.t_R2.fastq" 444: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 444: Test timeout computed to be: 1500 444: running 013.no-reads 444: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/013.t_I1.fastq input/013.t_I2.fastq input/013.t_R1.fastq input/013.t_R2.fastq 1>./actual/013.no-reads/load.stdout 2>./actual/013.no-reads/load.stderr 313/426 Test #444: Test_013.no-reads ...................................... Passed 2.91 sec test 445 Start 445: Test_013.no-reads-sa-hot 445: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "013.no-reads-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --max-err-count 0 input/013.t_I1.fastq input/013.t_I2.fastq input/013.t_R1.fastq input/013.t_R2.fastq" 445: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 445: Test timeout computed to be: 1500 445: running 013.no-reads-sa-hot 445: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/013.t_I1.fastq input/013.t_I2.fastq input/013.t_R1.fastq input/013.t_R2.fastq 1>./actual/013.no-reads-sa-hot/load.stdout 2>./actual/013.no-reads-sa-hot/load.stderr 314/426 Test #445: Test_013.no-reads-sa-hot ............................... Passed 5.62 sec test 446 Start 446: Test_013.no-reads-sa-cold 446: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "013.no-reads-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/013.t_I1.fastq input/013.t_I2.fastq input/013.t_R1.fastq input/013.t_R2.fastq" 446: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 446: Test timeout computed to be: 1500 446: running 013.no-reads-sa-cold 446: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/013.t_I1.fastq input/013.t_I2.fastq input/013.t_R1.fastq input/013.t_R2.fastq 1>./actual/013.no-reads-sa-cold/load.stdout 2>./actual/013.no-reads-sa-cold/load.stderr 315/426 Test #446: Test_013.no-reads-sa-cold .............................. Passed 7.33 sec test 447 Start 447: Test_014.2files_bad_sequence 447: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "014.2files_bad_sequence" "0" "0" "--debug" "--no-timestamp" "input/014.R1.fastq input/014.R2.fastq" 447: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 447: Test timeout computed to be: 1500 447: running 014.2files_bad_sequence 447: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/014.R1.fastq input/014.R2.fastq 1>./actual/014.2files_bad_sequence/load.stdout 2>./actual/014.2files_bad_sequence/load.stderr 316/426 Test #447: Test_014.2files_bad_sequence ........................... Passed 0.38 sec test 448 Start 448: Test_015.pending_spots 448: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "015.pending_spots" "0" "0" "--debug" "--no-timestamp" "input/015.R1.fq input/015.R2.fq" 448: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 448: Test timeout computed to be: 1500 448: running 015.pending_spots 448: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp input/015.R1.fq input/015.R2.fq 1>./actual/015.pending_spots/load.stdout 2>./actual/015.pending_spots/load.stderr 317/426 Test #448: Test_015.pending_spots ................................. Passed 0.37 sec test 449 Start 449: Test_015.pending_spots-sa-hot 449: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "015.pending_spots-sa-hot" "0" "0" "--debug" "--no-timestamp" "--spot-assembly input/015.R1.fq input/015.R2.fq" 449: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 449: Test timeout computed to be: 1500 449: running 015.pending_spots-sa-hot 449: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/015.R1.fq input/015.R2.fq 1>./actual/015.pending_spots-sa-hot/load.stdout 2>./actual/015.pending_spots-sa-hot/load.stderr 318/426 Test #449: Test_015.pending_spots-sa-hot .......................... Passed 0.69 sec test 450 Start 450: Test_015.pending_spots-sa-cold 450: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "015.pending_spots-sa-cold" "0" "0" "--debug" "--no-timestamp" "--spot-assembly --hot-reads-threshold 0 input/015.R1.fq input/015.R2.fq" 450: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 450: Test timeout computed to be: 1500 450: running 015.pending_spots-sa-cold 450: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/015.R1.fq input/015.R2.fq 1>./actual/015.pending_spots-sa-cold/load.stdout 2>./actual/015.pending_spots-sa-cold/load.stderr 319/426 Test #450: Test_015.pending_spots-sa-cold ......................... Passed 0.59 sec test 451 Start 451: Test_016.set.platform 451: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "sharq" "." "016.set.platform" "0" "1" "--debug" "--no-timestamp" "--platform=BGISEQ input/001.R1.fastq" 451: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 451: Test timeout computed to be: 1500 451: running 016.set.platform 451: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq --debug --no-timestamp --platform=BGISEQ input/001.R1.fastq -t ./actual/016.set.platform/telemetry 1>./actual/016.set.platform/load.stdout 2>./actual/016.set.platform/load.stderr 320/426 Test #451: Test_016.set.platform .................................. Passed 0.26 sec test 452 Start 452: Test_DbMetaSingleFile 452: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase-meta.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta" "." "DbMetaSingleFile" "input/001.R1.fastq" "LOAD" 452: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 452: Test timeout computed to be: 1500 452: running DbMetaSingleFile 452: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq input/001.R1.fastq 2>./actual/DbMetaSingleFile/load.stderr | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -T ./actual/DbMetaSingleFile/db -I ./../../../libs/schema:./../../../../ncbi-vdb/interfaces 1>./actual/DbMetaSingleFile/load.stdout 2>>./actual/DbMetaSingleFile/load.stderr 452: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase-meta.sh: line 96: ./actual/DbMetaSingleFile/db: Is a directory 452: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq input/001.R1.fastq 2>./actual/DbMetaSingleFile/load.stderr | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -T ./actual/DbMetaSingleFile/db -I ./../../../libs/schema:./../../../../ncbi-vdb/interfaces 1>./actual/DbMetaSingleFile/load.stdout 2>>./actual/DbMetaSingleFile/load.stderr 321/426 Test #452: Test_DbMetaSingleFile .................................. Passed 0.79 sec test 453 Start 453: Test_DbMetaMultipleFiles 453: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase-meta.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/kdbmeta" "." "DbMetaMultipleFiles" "input/r1.fastq input/r2.fastq" "LOAD" 453: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 453: Test timeout computed to be: 1500 453: running DbMetaMultipleFiles 453: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq input/r1.fastq input/r2.fastq 2>./actual/DbMetaMultipleFiles/load.stderr | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -T ./actual/DbMetaMultipleFiles/db -I ./../../../libs/schema:./../../../../ncbi-vdb/interfaces 1>./actual/DbMetaMultipleFiles/load.stdout 2>>./actual/DbMetaMultipleFiles/load.stderr 453: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase-meta.sh: line 96: ./actual/DbMetaMultipleFiles/db: Is a directory 453: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/sharq input/r1.fastq input/r2.fastq 2>./actual/DbMetaMultipleFiles/load.stderr | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/general-loader -T ./actual/DbMetaMultipleFiles/db -I ./../../../libs/schema:./../../../../ncbi-vdb/interfaces 1>./actual/DbMetaMultipleFiles/load.stdout 2>>./actual/DbMetaMultipleFiles/load.stderr 322/426 Test #453: Test_DbMetaMultipleFiles ............................... Passed 1.00 sec test 454 Start 454: Test_sra_sort_meta_copy 454: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sra-sort/sra_sort_meta_copy.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" 454: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sra-sort 454: Test timeout computed to be: 1500 454: Files before.xml and after.xml are identical 323/426 Test #454: Test_sra_sort_meta_copy ................................ Passed 1.68 sec test 455 Start 455: Test_Align_samextract 455: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_Align_samextract 455: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align 455: Test timeout computed to be: 1500 455: Running 14 test cases... 455: Test_Qual_Decode (0 s) 455: Fast_Sequence (0 s) 455: Fast_u32toa (0 s) 455: Fast_i32toa (0 s) 455: Fast_strtoi64 (0 s) 455: Decode_Cigar (0 s) 455: Check_Cigar (0 s) 455: In_Range (0 s) 455: Is_MD5 (0 s) 455: Is_floworder (0 s) 455: header1 (0 s) 455: BAMfile (0 s) 455: Filter (0 s) 455: None of below files should hang: 455: fuzz/id000000,sig11,src000036,ophavoc,rep128 455: fuzz/id000000,src000000+000001,opsplice,rep16 455: fuzz/id000000,src000000,oparith8,pos3,val+10 455: fuzz/id000001,src000001,oparith16,pos10,val-6 455: fuzz/id000001,src000001,oparith8,pos10,val+9 455: fuzz/id000001,src000003,ophavoc,rep2 455: fuzz/id000002,src000000+000006,opsplice,rep64 455: fuzz/id000002,src000001,oparith8,pos10,val-31 455: fuzz/id000002,src000001,ophavoc,rep4 455: fuzz/id000003,src000001,ophavoc,rep2 455: fuzz/id000003,src000001,ophavoc,rep8 455: fuzz/id000003,src000007,ophavoc,rep2 455: fuzz/id000004,src000001,ophavoc,rep2 455: fuzz/id000004,src000001,ophavoc,rep32 455: fuzz/id000004,src000012,ophavoc,rep8 455: fuzz/id000005,src000001,ophavoc,rep2 455: fuzz/id000005,src000001,ophavoc,rep8 455: fuzz/id000005,src000013+000012,opsplice,rep4 455: fuzz/id000006,src000001,ophavoc,rep2 455: fuzz/id000006,src000001,ophavoc,rep4 455: fuzz/id000006,src000014,ophavoc,rep2 455: fuzz/id000007,src000002,opflip1,pos4 455: fuzz/id000007,src000023,ophavoc,rep4 455: fuzz/id000008,src000002,opflip1,pos8 455: fuzz/id000008,src000029,ophavoc,rep64 455: fuzz/id000009,src000002,opflip1,pos22 455: fuzz/id000009,src000031,ophavoc,rep2 455: fuzz/id000010,src000002,opflip1,pos25 455: fuzz/id000010,src000037+000017,opsplice,rep2 455: fuzz/id000011,src000002,opflip1,pos33 455: fuzz/id000011,src000046,ophavoc,rep2 455: fuzz/id000012,src000002,opflip4,pos20 455: fuzz/id000012,src000049,ophavoc,rep4 455: fuzz/id000013,src000002,opflip4,pos38 455: fuzz/id000013,src000048,ophavoc,rep2 455: fuzz/id000014,src000002,opflip4,pos76 455: fuzz/id000014,src000021+000026,opsplice,rep2 455: fuzz/id000015,src000002,opflip8,pos25 455: fuzz/id000015,src000056,ophavoc,rep2 455: fuzz/id000016,src000002,opint16,pos77,val-129 455: fuzz/id000016,src000002,opint8,pos14,val-1 455: fuzz/id000017,src000002,ophavoc,rep32 455: fuzz/id000017,src000002,opint16,pos77,val-129 455: fuzz/id000018,src000002,opint32,pos25,val+2147483647 455: fuzz/id000018,src000003,opint16,pos3,val-129 455: fuzz/id000019,src000002,opint32,pos33,valbe-128 455: fuzz/id000019,src000007,opflip16,pos33 455: fuzz/id000020,src000002,ophavoc,rep4 455: fuzz/id000020,src000007,opint16,pos117,val-129 455: fuzz/id000021,src000004,opint16,pos4,val+32767 455: fuzz/id000021,src000011,opflip4,pos76 455: fuzz/id000022,src000004,ophavoc,rep16 455: fuzz/id000022,src000011,opflip4,pos116 455: fuzz/id000023,src000011,opflip4,pos116 455: fuzz/id000023,src000018,opflip1,pos15 455: fuzz/id000024,src000011,opflip16,pos52 455: fuzz/id000024,src000018,opflip1,pos26 455: fuzz/id000025,src000018,opflip1,pos15 455: fuzz/id000025,src000018,opflip4,pos92 455: fuzz/id000026,src000018,opflip1,pos26 455: fuzz/id000026,src000018,opflip4,pos137 455: fuzz/id000027,src000018,opflip4,pos24 455: fuzz/id000028,src000018,opflip4,pos92 455: fuzz/id000029,src000018,opflip4,pos137 455: fuzz/id000030,src000018,opint16,pos138,val-129 455: fuzz/id000031,src000018,ophavoc,rep8 455: 455: Fuzz_Hangs (0 s) 455: 455: *** No errors detected (0 s total) 324/426 Test #455: Test_Align_samextract .................................. Passed 0.38 sec test 457 Start 457: Test_Align_Cache 457: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align-cache/runtest.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "align-cache" 457: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align-cache 457: Test timeout computed to be: 1500 457: testing align-cache 325/426 Test #457: Test_Align_Cache ....................................... Passed 0.34 sec test 458 Start 458: Test_KFF 458: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_KFF 458: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat 458: Test timeout computed to be: 1500 458: Running 2 test cases... 458: ExtFileFormat (0 s) 458: MagicFileFormat (0 s) 458: 458: *** No errors detected (0 s total) 326/426 Test #458: Test_KFF ............................................... Passed 0.01 sec test 459 Start 459: Test_Copycat_Help 459: Test command: /usr/bin/sh "-c" "ls /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/copycat>/dev/null 2>&1 && /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/copycat -h || echo no copycat" 459: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat 459: Test timeout computed to be: 1500 459: 459: Usage: 459: copycat [options] src-file dst-file 459: copycat [options] src-file [src-file...] dst-dir 459: copycat [options] -o dst-dir src-file [src-file...] 459: 459: Summary: 459: Copies files and/or directories, creating a catalog of the copied files. 459: -x|--cache-dir location of output cached files 459: -f|--force force overwrite of existing files 459: -o|--output location of output 459: -e|--extract location of extracted files 459: -E|--extract-to-dir extracted directories match normal XML 459: -X|--xml-dir XML matches extracted files 459: --input-buffer system file reads are of blocks of this size 459: --output-buffer system file writes are of blocks of this 459: size 459: --no-bzip2 do not decompress files compressed with 459: bzip2 459: --no-md5 do not calculate md5 hashes 459: -h|--help Output brief explanation for the program. 459: -V|--version Display the version of the program then 459: quit. 459: -L|--log-level Logging level as number or enum string. One 459: of (fatal|sys|int|err|warn|info|debug) or 459: (0-6) Current/default is warn. 459: -v|--verbose Increase the verbosity of the program 459: status messages. Use multiple times for more 459: verbosity. Negates quiet. 459: -q|--quiet Turn off all status messages for the 459: program. Negated by verbose. 459: --option-file Read more options and parameters from the 459: file. 459: Use: 459: Copy and catalog: 459: Some quick examples: 459: copycat dir/file.tar other-dir/file.tar 459: copy file.tar from dir to other-dir and write the catalog to stdout 459: copycat dir/file.tar otherdir/ 459: the same 459: copycat "ncbi-file:dir/file.tar.nenc?encrypt&pwfile=pw other-dir.file.tar 459: copy and decrypt file.tar.nenc from dir to other-dir and catalog 459: copycat dir/file.tar "ncbi-file:other-dir/file.tar.nenc?encrypt&pwfile=pw 459: copy and encrypt file.tar from dir to other-dir/file.tar.nenc and catalog 459: copycat "ncbi-file:dir/file.tar.nenc?encrypt&pwfile=pw1 \ 459: "ncbi-file:other-dir/file.tar.nenc?encrypt&pwfile=pw2 459: copy the file as above while changing the encryption 459: 459: Use: 459: Copy source file[s] to a destination file or directory. 459: File names can either be typical path names or they can be URLs (IRLs) using 459: the standard "file" or extended "ncbi-file" schemes. 459: The catalog is XML output sent by default to stdout. 459: As UTF-8 is accepted in the paths they are IRLs for International Resource 459: Locators. 459: 459: If the specified destination does not exist, there could be an ambiguity 459: whether the destination is supposed to be a file or directory. If the 459: entered path ends in a '/' character or if there is more than one source 459: it is assumed to mean a directory and is created as such. If neither of 459: of those apply it is assumed to be a file. 459: 459: The sources or destination may also be special Unix devices: 459: /dev/stdin is supported as a source. 459: /dev/stdout and /dev/stderr is supported as a destination. 459: Other file descriptor devices can be used in the form: 459: /dev/fd/ 459: For example /dev/stdin is synonymous with /dev/fd/0 as a source. 459: If /dev/stdout or /dev/fd/1 is used as the destination then the XML 459: output is redirected to /dev/stderr (/dev/fd/2). 459: Device /dev/null as the destination is treated as a file with only one 459: source but as a directory if more than one source. Using this device 459: means no actual file will be copied but the cataloging will be done but 459: xml-base-node must be used. 459: 459: These special devices can be entered using the URL (IRL) schemes if 459: desired. This allows the use of 'query' decorators. 459: 459: If a query is added to the URL it will need to be enclosed within '"' 459: characters on a command line to prevent premature interpretation. 459: The query for the 'ncbi-file' extension to the 'file' scheme allows 459: encryption and decryption. The supported query is introduced by the 459: standard URI/IRI syntax of a '?' character with a '&' character 459: separating individual query-entries. 459: 459: The supported query entries are: 459: 'encrypt' or 'enc' to mean the input may be encrypted or the output 459: will be encrypted, 459: 'pwfile=' gives the path to file containing the password. 459: 'pwfd=' gives the numerical file descriptor from which to read 459: the password, 459: 459: In this program the encrypted input can apply to a file contained within 459: the source rather than just the source file itself. The tool is fully 459: compatible with all versions of NCBI encryption. 459: 459: If the output is to be encrypted only the newer FIPS compliant encryption 459: will be used and applies to the whole file. 459: 459: NOTE: Not all combinations of URL specifications will work at this point. 459: 459: NOTE: using the same file descriptor for multiple sources or overlapping with 459: stdin/stdout/stderr may cause undefined behavior including hanging the 459: the program. 459: 459: The '-x' option allows small files that are typed as eligible for 459: caching to be copied to the cache directory provided. the directory 459: will be created if necessary. 459: the intent is to capture top-level files, such that files are copied 459: into the flat cache directory without regard to where they were found 459: in the input hierarchy. in the case of name conflict, output files will 459: be renamed. 459: 459: To prevent internal decompression of bzipped files, use the option 459: '--no-bzip2' 459: 459: To prevent calculation of MD5 hashes, use the option 459: '--no-md5' 459: 459: 459: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/copycat : 3.2.1 459: 327/426 Test #459: Test_Copycat_Help ...................................... Passed 0.01 sec test 460 Start 460: Test_Copycat_Bad_Name 460: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat/test-bad-name.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "copycat" 460: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat 460: Test timeout computed to be: 1500 460: testing copycat expected output for file name with % 460: copycat test file name with % succeeded 328/426 Test #460: Test_Copycat_Bad_Name .................................. Passed 0.09 sec test 461 Start 461: Test_Copycat_IdenticalCopy 461: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat/test-copy.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "copycat" 461: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat 461: Test timeout computed to be: 1500 461: testing copycat copy 461: copycat copy succeeded 329/426 Test #461: Test_Copycat_IdenticalCopy ............................. Passed 0.10 sec test 462 Start 462: Test_Copycat_FastqParser 462: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat/test-fastq.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "copycat" 462: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat 462: Test timeout computed to be: 1500 462: testing copycat fastq parser 462: copycat fastq parser succeeded 330/426 Test #462: Test_Copycat_FastqParser ............................... Passed 0.23 sec test 463 Start 463: Test_MakeReadFilter 463: Test command: /usr/bin/cmake "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/tmp" "/usr/bin/cmake" "-E" "env" "NCBI_SETTINGS=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/tmp/tmp.mkfg" "/usr/bin/cmake" "-E" "env" "VDB_LIBRARY_PATH=/usr/lib/aarch64-linux-gnu" "./runtest.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "/usr/lib/aarch64-linux-gnu" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/tmp" "" 463: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/make-read-filter 463: Test timeout computed to be: 1500 463: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin /usr/lib/aarch64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/tmp 331/426 Test #463: Test_MakeReadFilter .................................... Passed 0.51 sec test 464 Start 464: Test_Read_filter_redact_Check_exit_code 464: Test command: /usr/bin/sh "-c" "ls /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/read-filter-redact>/dev/null 2>&1 && /usr/bin/python3 /build/reproducible-path/sra-sdk-3.2.1+dfsg/build/check-exit-code.py /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/read-filter-redact || echo no read-filter-redact" 464: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/read-filter-redact 464: Test timeout computed to be: 1500 464: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/read-filter-redact] 332/426 Test #464: Test_Read_filter_redact_Check_exit_code ................ Passed 0.09 sec test 465 Start 465: Test_Read_filter_redact 465: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/read-filter-redact/runtests.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "read-filter-redact" 465: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/read-filter-redact 465: Test timeout computed to be: 1500 465: Testing read-filter-redact from /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin 333/426 Test #465: Test_Read_filter_redact ................................ Passed 0.49 sec test 466 Start 466: Test_VDB_Copy_Check_exit_code 466: Test command: /usr/bin/python3 "/build/reproducible-path/sra-sdk-3.2.1+dfsg/build/check-exit-code.py" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-copy" 466: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/vdb-copy 466: Test timeout computed to be: 1500 466: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-copy] 334/426 Test #466: Test_VDB_Copy_Check_exit_code .......................... Passed 0.08 sec test 468 Start 468: Test_VDB_Copy_Should_Fail_On_Invalid_Accession 468: Test command: /usr/bin/sh "-c" "./return_code_on_error.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" 468: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/vdb-copy 468: Test timeout computed to be: 1500 468: 2026-01-18T06:01:44 vdb-copy.3.2.1 int: item not found while copying within virtual database module - the path 'NOT_EXISTING_DIR' cannot be opened as vdb-database or vdb-table 468: SUCCESS: vdb-copy returned 3 if ask to copy a none-existing object. 335/426 Test #468: Test_VDB_Copy_Should_Fail_On_Invalid_Accession ......... Passed 0.08 sec test 470 Start 470: Test_VDB_Diff_Check_exit_code 470: Test command: /usr/bin/sh "-c" "ls /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-diff>/dev/null 2>&1 && /usr/bin/python3 /build/reproducible-path/sra-sdk-3.2.1+dfsg/build/check-exit-code.py /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-diff || echo no vdb-diff" 470: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/vdb-diff 470: Test timeout computed to be: 1500 470: WARNING[TEST1] help message is in 'STDOUT' 470: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/vdb-diff] 336/426 Test #470: Test_VDB_Diff_Check_exit_code .......................... Passed 0.08 sec test 473 Start 473: Test_qa-stats_Input 473: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_qa-stats_Input 473: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 473: Test timeout computed to be: 1500 473: Running 4 test cases... 473: Empty (0 s) 473: Fastq_1 (0 s) 473: Fastq_2 (0 s) 473: Fastq_File (0 s) 473: 473: *** No errors detected (0 s total) 337/426 Test #473: Test_qa-stats_Input .................................... Passed 0.01 sec test 474 Start 474: Test_qa-stats_Output 474: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_qa-stats_Output 474: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 474: Test timeout computed to be: 1500 474: Running 19 test cases... 474: Empty (0 s) 474: InsertInt (0 s) 474: InsertFloat (0 s) 474: InsertTrue (0 s) 474: InsertFalse (0 s) 474: InsertChar (0 s) 474: InsertCString (0 s) 474: InsertString (0 s) 474: InsertStringView (0 s) 474: InsertArrayElem (0 s) 474: InsertArrayElems (0 s) 474: InsertArrayElems_Strings (0 s) 474: InsertMember (0 s) 474: InsertMembers (0 s) 474: InsertArrayElem_compact (0 s) 474: InsertArrayElems_compact (0 s) 474: InsertArrayElems_Strings_compact (0 s) 474: InsertMember_compact (0 s) 474: InsertMembers_compact (0 s) 474: 474: *** No errors detected (0 s total) 338/426 Test #474: Test_qa-stats_Output ................................... Passed 0.01 sec test 475 Start 475: Test_qa-stats_Fingerprint 475: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_qa-stats_Fingerprint 475: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 475: Test timeout computed to be: 1500 475: Running 7 test cases... 475: Empty (0 s) 475: EmptyRead (0 s) 475: OneBase (0 s) 475: AllBases (0 s) 475: MultiRead (0 s) 475: ReadHash_example_Fig_1_Fig_2 (0 s) 475: WrapAround (0 s) 475: 475: *** No errors detected (0 s total) 339/426 Test #475: Test_qa-stats_Fingerprint .............................. Passed 0.01 sec test 476 Start 476: Test_qa-stats_Hashing 476: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/test-bin/Test_qa-stats_Hashing 476: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 476: Test timeout computed to be: 1500 476: Running 20 test cases... 476: Empty_SHA224 (0 s) 476: Empty_VDB_SHA224 (0 s) 476: Empty_SHA256 (0 s) 476: Empty_VDB_SHA256 (0 s) 476: Empty_SHA384 (0 s) 476: Empty_VDB_SHA384 (0 s) 476: Empty_SHA512 (0 s) 476: Empty_VDB_SHA512 (0 s) 476: SHA224_QBF (0 s) 476: VDB_SHA224_QBF (0 s) 476: SHA256_QBF (0 s) 476: VDB_SHA256_QBF (0 s) 476: SHA384_QBF (0 s) 476: VDB_SHA384_QBF (0 s) 476: SHA512_QBF (0 s) 476: VDB_SHA512_QBF (0 s) 476: SHA_224 (0 s) 476: SHA_256 (0 s) 476: SHA_384 (0 s) 476: SHA_512 (0 s) 476: 476: *** No errors detected (0 s total) 340/426 Test #476: Test_qa-stats_Hashing .................................. Passed 0.01 sec test 477 Start 477: Test_qa-stats 477: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/runtests.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats" 477: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 477: Test timeout computed to be: 1500 477: /usr/bin/python3 477: python3 found 477: /usr/bin/python3 477: Testing with default parameters. 477: progress: 102 records, per second: 26822.5 477: progress: 102 records, per second: 13451.2 477: progress: 102 records, per second: 18491 477: Testing with one biological read. 477: progress: 101 records, per second: 26401.7 477: progress: 101 records, per second: 10690.1 477: progress: 101 records, per second: 19037.2 477: Testing with one technical read. 477: progress: 100 records, per second: 21325.1 477: progress: 100 records, per second: 7590.15 477: progress: 100 records, per second: 15930.7 477: Testing with two biological read. 477: progress: 100 records, per second: 26965.3 477: progress: 100 records, per second: 12883.1 477: progress: 100 records, per second: 18673.3 477: Testing with one biological and one technical read. 477: progress: 100 records, per second: 22101.8 477: progress: 100 records, per second: 8200.08 477: progress: 100 records, per second: 15741.1 477: Testing with multiple layouts. 477: progress: 100 records, per second: 23481.1 477: progress: 100 records, per second: 8470.33 477: progress: 100 records, per second: 18042.2 341/426 Test #477: Test_qa-stats .......................................... Passed 1.78 sec test 478 Start 478: Test_qa_stats_001.R1.fastq 478: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/001.R1.fastq 1>actual/001.R1.fastq.stdout 2>actual/001.R1.fastq.stderr" 478: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 478: Test timeout computed to be: 1500 342/426 Test #478: Test_qa_stats_001.R1.fastq ............................. Passed 0.01 sec test 479 Start 479: Test_qa_stats_003.R1.fastq 479: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/003.R1.fastq 1>actual/003.R1.fastq.stdout 2>actual/003.R1.fastq.stderr" 479: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 479: Test timeout computed to be: 1500 343/426 Test #479: Test_qa_stats_003.R1.fastq ............................. Passed 0.01 sec test 480 Start 480: Test_qa_stats_003.R2.fastq 480: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/003.R2.fastq 1>actual/003.R2.fastq.stdout 2>actual/003.R2.fastq.stderr" 480: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 480: Test timeout computed to be: 1500 344/426 Test #480: Test_qa_stats_003.R2.fastq ............................. Passed 0.01 sec test 481 Start 481: Test_qa_stats_003._I1.fastq 481: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/003._I1.fastq 1>actual/003._I1.fastq.stdout 2>actual/003._I1.fastq.stderr" 481: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 481: Test timeout computed to be: 1500 345/426 Test #481: Test_qa_stats_003._I1.fastq ............................ Passed 0.01 sec test 482 Start 482: Test_qa_stats_003.t_I1.fastq 482: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/003.t_I1.fastq 1>actual/003.t_I1.fastq.stdout 2>actual/003.t_I1.fastq.stderr" 482: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 482: Test timeout computed to be: 1500 346/426 Test #482: Test_qa_stats_003.t_I1.fastq ........................... Passed 0.01 sec test 483 Start 483: Test_qa_stats_003.t_R1.fastq 483: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/003.t_R1.fastq 1>actual/003.t_R1.fastq.stdout 2>actual/003.t_R1.fastq.stderr" 483: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 483: Test timeout computed to be: 1500 347/426 Test #483: Test_qa_stats_003.t_R1.fastq ........................... Passed 0.01 sec test 484 Start 484: Test_qa_stats_003.t_R2.fastq 484: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/003.t_R2.fastq 1>actual/003.t_R2.fastq.stdout 2>actual/003.t_R2.fastq.stderr" 484: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 484: Test timeout computed to be: 1500 348/426 Test #484: Test_qa_stats_003.t_R2.fastq ........................... Passed 0.01 sec test 485 Start 485: Test_qa_stats_009.test_I1_001.fastq 485: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/009.test_I1_001.fastq 1>actual/009.test_I1_001.fastq.stdout 2>actual/009.test_I1_001.fastq.stderr" 485: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 485: Test timeout computed to be: 1500 349/426 Test #485: Test_qa_stats_009.test_I1_001.fastq .................... Passed 0.01 sec test 486 Start 486: Test_qa_stats_009.test_R1_001.fastq 486: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/009.test_R1_001.fastq 1>actual/009.test_R1_001.fastq.stdout 2>actual/009.test_R1_001.fastq.stderr" 486: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 486: Test timeout computed to be: 1500 350/426 Test #486: Test_qa_stats_009.test_R1_001.fastq .................... Passed 0.02 sec test 487 Start 487: Test_qa_stats_009.test_R2_001.fastq 487: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/009.test_R2_001.fastq 1>actual/009.test_R2_001.fastq.stdout 2>actual/009.test_R2_001.fastq.stderr" 487: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 487: Test timeout computed to be: 1500 351/426 Test #487: Test_qa_stats_009.test_R2_001.fastq .................... Passed 0.01 sec test 488 Start 488: Test_qa_stats_009.test_R3_001.fastq 488: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/009.test_R3_001.fastq 1>actual/009.test_R3_001.fastq.stdout 2>actual/009.test_R3_001.fastq.stderr" 488: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 488: Test timeout computed to be: 1500 352/426 Test #488: Test_qa_stats_009.test_R3_001.fastq .................... Passed 0.02 sec test 489 Start 489: Test_qa_stats_012.test2_I1_001.fastq 489: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/012.test2_I1_001.fastq 1>actual/012.test2_I1_001.fastq.stdout 2>actual/012.test2_I1_001.fastq.stderr" 489: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 489: Test timeout computed to be: 1500 353/426 Test #489: Test_qa_stats_012.test2_I1_001.fastq ................... Passed 0.01 sec test 490 Start 490: Test_qa_stats_012.test2_R1_001.fastq 490: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/012.test2_R1_001.fastq 1>actual/012.test2_R1_001.fastq.stdout 2>actual/012.test2_R1_001.fastq.stderr" 490: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 490: Test timeout computed to be: 1500 354/426 Test #490: Test_qa_stats_012.test2_R1_001.fastq ................... Passed 0.01 sec test 491 Start 491: Test_qa_stats_012.test2_R2_001.fastq 491: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/012.test2_R2_001.fastq 1>actual/012.test2_R2_001.fastq.stdout 2>actual/012.test2_R2_001.fastq.stderr" 491: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 491: Test timeout computed to be: 1500 355/426 Test #491: Test_qa_stats_012.test2_R2_001.fastq ................... Passed 0.01 sec test 492 Start 492: Test_qa_stats_012.test_I1_001.fastq 492: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/012.test_I1_001.fastq 1>actual/012.test_I1_001.fastq.stdout 2>actual/012.test_I1_001.fastq.stderr" 492: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 492: Test timeout computed to be: 1500 356/426 Test #492: Test_qa_stats_012.test_I1_001.fastq .................... Passed 0.01 sec test 493 Start 493: Test_qa_stats_012.test_R1_001.fastq 493: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/012.test_R1_001.fastq 1>actual/012.test_R1_001.fastq.stdout 2>actual/012.test_R1_001.fastq.stderr" 493: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 493: Test timeout computed to be: 1500 357/426 Test #493: Test_qa_stats_012.test_R1_001.fastq .................... Passed 0.01 sec test 494 Start 494: Test_qa_stats_012.test_R2_001.fastq 494: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/012.test_R2_001.fastq 1>actual/012.test_R2_001.fastq.stdout 2>actual/012.test_R2_001.fastq.stderr" 494: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 494: Test timeout computed to be: 1500 358/426 Test #494: Test_qa_stats_012.test_R2_001.fastq .................... Passed 0.01 sec test 495 Start 495: Test_qa_stats_013.t_I1.fastq 495: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/013.t_I1.fastq 1>actual/013.t_I1.fastq.stdout 2>actual/013.t_I1.fastq.stderr" 495: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 495: Test timeout computed to be: 1500 359/426 Test #495: Test_qa_stats_013.t_I1.fastq ........................... Passed 0.10 sec test 496 Start 496: Test_qa_stats_013.t_I2.fastq 496: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/013.t_I2.fastq 1>actual/013.t_I2.fastq.stdout 2>actual/013.t_I2.fastq.stderr" 496: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 496: Test timeout computed to be: 1500 360/426 Test #496: Test_qa_stats_013.t_I2.fastq ........................... Passed 0.11 sec test 497 Start 497: Test_qa_stats_013.t_R1.fastq 497: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/013.t_R1.fastq 1>actual/013.t_R1.fastq.stdout 2>actual/013.t_R1.fastq.stderr" 497: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 497: Test timeout computed to be: 1500 361/426 Test #497: Test_qa_stats_013.t_R1.fastq ........................... Passed 0.15 sec test 498 Start 498: Test_qa_stats_013.t_R2.fastq 498: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/013.t_R2.fastq 1>actual/013.t_R2.fastq.stdout 2>actual/013.t_R2.fastq.stderr" 498: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 498: Test timeout computed to be: 1500 362/426 Test #498: Test_qa_stats_013.t_R2.fastq ........................... Passed 0.21 sec test 499 Start 499: Test_qa_stats_014.R1.fastq 499: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/014.R1.fastq 1>actual/014.R1.fastq.stdout 2>actual/014.R1.fastq.stderr" 499: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 499: Test timeout computed to be: 1500 363/426 Test #499: Test_qa_stats_014.R1.fastq ............................. Passed 0.01 sec test 500 Start 500: Test_qa_stats_014.R2.fastq 500: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/014.R2.fastq 1>actual/014.R2.fastq.stdout 2>actual/014.R2.fastq.stderr" 500: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 500: Test timeout computed to be: 1500 364/426 Test #500: Test_qa_stats_014.R2.fastq ............................. Passed 0.01 sec test 501 Start 501: Test_qa_stats_1.1.fastq 501: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/1.1.fastq 1>actual/1.1.fastq.stdout 2>actual/1.1.fastq.stderr" 501: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 501: Test timeout computed to be: 1500 365/426 Test #501: Test_qa_stats_1.1.fastq ................................ Passed 0.01 sec test 502 Start 502: Test_qa_stats_1.2.fastq 502: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/1.2.fastq 1>actual/1.2.fastq.stdout 2>actual/1.2.fastq.stderr" 502: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 502: Test timeout computed to be: 1500 366/426 Test #502: Test_qa_stats_1.2.fastq ................................ Passed 0.01 sec test 503 Start 503: Test_qa_stats_1.3.fastq 503: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/1.3.fastq 1>actual/1.3.fastq.stdout 2>actual/1.3.fastq.stderr" 503: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 503: Test timeout computed to be: 1500 367/426 Test #503: Test_qa_stats_1.3.fastq ................................ Passed 0.01 sec test 504 Start 504: Test_qa_stats_1.4.fastq 504: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/1.4.fastq 1>actual/1.4.fastq.stdout 2>actual/1.4.fastq.stderr" 504: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 504: Test timeout computed to be: 1500 368/426 Test #504: Test_qa_stats_1.4.fastq ................................ Passed 0.01 sec test 505 Start 505: Test_qa_stats_10.0.fastq 505: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/10.0.fastq 1>actual/10.0.fastq.stdout 2>actual/10.0.fastq.stderr" 505: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 505: Test timeout computed to be: 1500 369/426 Test #505: Test_qa_stats_10.0.fastq ............................... Passed 0.01 sec test 506 Start 506: Test_qa_stats_11.0.1.fasta 506: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/11.0.1.fasta 1>actual/11.0.1.fasta.stdout 2>actual/11.0.1.fasta.stderr" 506: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 506: Test timeout computed to be: 1500 370/426 Test #506: Test_qa_stats_11.0.1.fasta ............................. Passed 0.01 sec test 507 Start 507: Test_qa_stats_11.0.2.fasta 507: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/11.0.2.fasta 1>actual/11.0.2.fasta.stdout 2>actual/11.0.2.fasta.stderr" 507: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 507: Test timeout computed to be: 1500 371/426 Test #507: Test_qa_stats_11.0.2.fasta ............................. Passed 0.01 sec test 508 Start 508: Test_qa_stats_11.1.1.fastq 508: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/11.1.1.fastq 1>actual/11.1.1.fastq.stdout 2>actual/11.1.1.fastq.stderr" 508: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 508: Test timeout computed to be: 1500 372/426 Test #508: Test_qa_stats_11.1.1.fastq ............................. Passed 0.01 sec test 509 Start 509: Test_qa_stats_11.1.2.fastq 509: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/11.1.2.fastq 1>actual/11.1.2.fastq.stdout 2>actual/11.1.2.fastq.stderr" 509: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 509: Test timeout computed to be: 1500 373/426 Test #509: Test_qa_stats_11.1.2.fastq ............................. Passed 0.01 sec test 510 Start 510: Test_qa_stats_12.0.fastq 510: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/12.0.fastq 1>actual/12.0.fastq.stdout 2>actual/12.0.fastq.stderr" 510: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 510: Test timeout computed to be: 1500 374/426 Test #510: Test_qa_stats_12.0.fastq ............................... Passed 0.01 sec test 511 Start 511: Test_qa_stats_12.1.fastq 511: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/12.1.fastq 1>actual/12.1.fastq.stdout 2>actual/12.1.fastq.stderr" 511: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 511: Test timeout computed to be: 1500 375/426 Test #511: Test_qa_stats_12.1.fastq ............................... Passed 0.01 sec test 512 Start 512: Test_qa_stats_12.2.fastq 512: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/12.2.fastq 1>actual/12.2.fastq.stdout 2>actual/12.2.fastq.stderr" 512: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 512: Test timeout computed to be: 1500 376/426 Test #512: Test_qa_stats_12.2.fastq ............................... Passed 0.01 sec test 513 Start 513: Test_qa_stats_13.0.fastq 513: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/13.0.fastq 1>actual/13.0.fastq.stdout 2>actual/13.0.fastq.stderr" 513: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 513: Test timeout computed to be: 1500 377/426 Test #513: Test_qa_stats_13.0.fastq ............................... Passed 0.01 sec test 514 Start 514: Test_qa_stats_13.1.fastq 514: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/13.1.fastq 1>actual/13.1.fastq.stdout 2>actual/13.1.fastq.stderr" 514: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 514: Test timeout computed to be: 1500 378/426 Test #514: Test_qa_stats_13.1.fastq ............................... Passed 0.01 sec test 515 Start 515: Test_qa_stats_14.0.fasta 515: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/14.0.fasta 1>actual/14.0.fasta.stdout 2>actual/14.0.fasta.stderr" 515: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 515: Test timeout computed to be: 1500 379/426 Test #515: Test_qa_stats_14.0.fasta ............................... Passed 0.01 sec test 516 Start 516: Test_qa_stats_15.0.fastq 516: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/15.0.fastq 1>actual/15.0.fastq.stdout 2>actual/15.0.fastq.stderr" 516: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 516: Test timeout computed to be: 1500 380/426 Test #516: Test_qa_stats_15.0.fastq ............................... Passed 0.02 sec test 517 Start 517: Test_qa_stats_16.0.fasta 517: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/16.0.fasta 1>actual/16.0.fasta.stdout 2>actual/16.0.fasta.stderr" 517: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 517: Test timeout computed to be: 1500 381/426 Test #517: Test_qa_stats_16.0.fasta ............................... Passed 0.02 sec test 518 Start 518: Test_qa_stats_16.1.fastq 518: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/16.1.fastq 1>actual/16.1.fastq.stdout 2>actual/16.1.fastq.stderr" 518: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 518: Test timeout computed to be: 1500 382/426 Test #518: Test_qa_stats_16.1.fastq ............................... Passed 0.01 sec test 519 Start 519: Test_qa_stats_17.0.fastq 519: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/17.0.fastq 1>actual/17.0.fastq.stdout 2>actual/17.0.fastq.stderr" 519: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 519: Test timeout computed to be: 1500 383/426 Test #519: Test_qa_stats_17.0.fastq ............................... Passed 0.01 sec test 520 Start 520: Test_qa_stats_18.0.fastq 520: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/18.0.fastq 1>actual/18.0.fastq.stdout 2>actual/18.0.fastq.stderr" 520: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 520: Test timeout computed to be: 1500 384/426 Test #520: Test_qa_stats_18.0.fastq ............................... Passed 0.01 sec test 521 Start 521: Test_qa_stats_2.1.1.fastq 521: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.1.1.fastq 1>actual/2.1.1.fastq.stdout 2>actual/2.1.1.fastq.stderr" 521: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 521: Test timeout computed to be: 1500 385/426 Test #521: Test_qa_stats_2.1.1.fastq .............................. Passed 0.01 sec test 522 Start 522: Test_qa_stats_2.1.fastq 522: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.1.fastq 1>actual/2.1.fastq.stdout 2>actual/2.1.fastq.stderr" 522: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 522: Test timeout computed to be: 1500 386/426 Test #522: Test_qa_stats_2.1.fastq ................................ Passed 0.01 sec test 523 Start 523: Test_qa_stats_2.2.fastq 523: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.2.fastq 1>actual/2.2.fastq.stdout 2>actual/2.2.fastq.stderr" 523: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 523: Test timeout computed to be: 1500 387/426 Test #523: Test_qa_stats_2.2.fastq ................................ Passed 0.01 sec test 524 Start 524: Test_qa_stats_2.3.fastq 524: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.3.fastq 1>actual/2.3.fastq.stdout 2>actual/2.3.fastq.stderr" 524: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 524: Test timeout computed to be: 1500 388/426 Test #524: Test_qa_stats_2.3.fastq ................................ Passed 0.01 sec test 525 Start 525: Test_qa_stats_2.4.fastq 525: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.4.fastq 1>actual/2.4.fastq.stdout 2>actual/2.4.fastq.stderr" 525: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 525: Test timeout computed to be: 1500 389/426 Test #525: Test_qa_stats_2.4.fastq ................................ Passed 0.01 sec test 526 Start 526: Test_qa_stats_2.5.fastq 526: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.5.fastq 1>actual/2.5.fastq.stdout 2>actual/2.5.fastq.stderr" 526: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 526: Test timeout computed to be: 1500 390/426 Test #526: Test_qa_stats_2.5.fastq ................................ Passed 0.01 sec test 527 Start 527: Test_qa_stats_2.6.fastq 527: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.6.fastq 1>actual/2.6.fastq.stdout 2>actual/2.6.fastq.stderr" 527: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 527: Test timeout computed to be: 1500 391/426 Test #527: Test_qa_stats_2.6.fastq ................................ Passed 0.01 sec test 528 Start 528: Test_qa_stats_2.7.fastq 528: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.7.fastq 1>actual/2.7.fastq.stdout 2>actual/2.7.fastq.stderr" 528: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 528: Test timeout computed to be: 1500 392/426 Test #528: Test_qa_stats_2.7.fastq ................................ Passed 0.01 sec test 529 Start 529: Test_qa_stats_2.8.1.fastq 529: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.8.1.fastq 1>actual/2.8.1.fastq.stdout 2>actual/2.8.1.fastq.stderr" 529: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 529: Test timeout computed to be: 1500 393/426 Test #529: Test_qa_stats_2.8.1.fastq .............................. Passed 0.01 sec test 530 Start 530: Test_qa_stats_2.8.fastq 530: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.8.fastq 1>actual/2.8.fastq.stdout 2>actual/2.8.fastq.stderr" 530: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 530: Test timeout computed to be: 1500 394/426 Test #530: Test_qa_stats_2.8.fastq ................................ Passed 0.01 sec test 531 Start 531: Test_qa_stats_2.9.1.fastq 531: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.9.1.fastq 1>actual/2.9.1.fastq.stdout 2>actual/2.9.1.fastq.stderr" 531: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 531: Test timeout computed to be: 1500 395/426 Test #531: Test_qa_stats_2.9.1.fastq .............................. Passed 0.01 sec test 532 Start 532: Test_qa_stats_2.9.fastq 532: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/2.9.fastq 1>actual/2.9.fastq.stdout 2>actual/2.9.fastq.stderr" 532: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 532: Test timeout computed to be: 1500 396/426 Test #532: Test_qa_stats_2.9.fastq ................................ Passed 0.01 sec test 533 Start 533: Test_qa_stats_3.1a.fastq 533: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.1a.fastq 1>actual/3.1a.fastq.stdout 2>actual/3.1a.fastq.stderr" 533: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 533: Test timeout computed to be: 1500 397/426 Test #533: Test_qa_stats_3.1a.fastq ............................... Passed 0.01 sec test 534 Start 534: Test_qa_stats_3.1b.fastq 534: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.1b.fastq 1>actual/3.1b.fastq.stdout 2>actual/3.1b.fastq.stderr" 534: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 534: Test timeout computed to be: 1500 398/426 Test #534: Test_qa_stats_3.1b.fastq ............................... Passed 0.01 sec test 535 Start 535: Test_qa_stats_3.2a.fastq 535: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.2a.fastq 1>actual/3.2a.fastq.stdout 2>actual/3.2a.fastq.stderr" 535: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 535: Test timeout computed to be: 1500 399/426 Test #535: Test_qa_stats_3.2a.fastq ............................... Passed 0.01 sec test 536 Start 536: Test_qa_stats_3.2b.fastq 536: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.2b.fastq 1>actual/3.2b.fastq.stdout 2>actual/3.2b.fastq.stderr" 536: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 536: Test timeout computed to be: 1500 400/426 Test #536: Test_qa_stats_3.2b.fastq ............................... Passed 0.01 sec test 537 Start 537: Test_qa_stats_3.3a.fastq 537: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.3a.fastq 1>actual/3.3a.fastq.stdout 2>actual/3.3a.fastq.stderr" 537: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 537: Test timeout computed to be: 1500 401/426 Test #537: Test_qa_stats_3.3a.fastq ............................... Passed 0.01 sec test 538 Start 538: Test_qa_stats_3.3b.fastq 538: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.3b.fastq 1>actual/3.3b.fastq.stdout 2>actual/3.3b.fastq.stderr" 538: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 538: Test timeout computed to be: 1500 402/426 Test #538: Test_qa_stats_3.3b.fastq ............................... Passed 0.01 sec test 539 Start 539: Test_qa_stats_3.4a.fastq 539: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.4a.fastq 1>actual/3.4a.fastq.stdout 2>actual/3.4a.fastq.stderr" 539: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 539: Test timeout computed to be: 1500 403/426 Test #539: Test_qa_stats_3.4a.fastq ............................... Passed 0.01 sec test 540 Start 540: Test_qa_stats_3.4b.fastq 540: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/3.4b.fastq 1>actual/3.4b.fastq.stdout 2>actual/3.4b.fastq.stderr" 540: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 540: Test timeout computed to be: 1500 404/426 Test #540: Test_qa_stats_3.4b.fastq ............................... Passed 0.01 sec test 541 Start 541: Test_qa_stats_4.4.fastq 541: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/4.4.fastq 1>actual/4.4.fastq.stdout 2>actual/4.4.fastq.stderr" 541: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 541: Test timeout computed to be: 1500 405/426 Test #541: Test_qa_stats_4.4.fastq ................................ Passed 0.01 sec test 542 Start 542: Test_qa_stats_4.5.1.fastq 542: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/4.5.1.fastq 1>actual/4.5.1.fastq.stdout 2>actual/4.5.1.fastq.stderr" 542: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 542: Test timeout computed to be: 1500 406/426 Test #542: Test_qa_stats_4.5.1.fastq .............................. Passed 0.01 sec test 543 Start 543: Test_qa_stats_4.5.2.fastq 543: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/4.5.2.fastq 1>actual/4.5.2.fastq.stdout 2>actual/4.5.2.fastq.stderr" 543: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 543: Test timeout computed to be: 1500 407/426 Test #543: Test_qa_stats_4.5.2.fastq .............................. Passed 0.02 sec test 544 Start 544: Test_qa_stats_4.5.fastq 544: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/4.5.fastq 1>actual/4.5.fastq.stdout 2>actual/4.5.fastq.stderr" 544: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 544: Test timeout computed to be: 1500 408/426 Test #544: Test_qa_stats_4.5.fastq ................................ Passed 0.01 sec test 545 Start 545: Test_qa_stats_4.8.fastq 545: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/4.8.fastq 1>actual/4.8.fastq.stdout 2>actual/4.8.fastq.stderr" 545: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 545: Test timeout computed to be: 1500 409/426 Test #545: Test_qa_stats_4.8.fastq ................................ Passed 0.01 sec test 546 Start 546: Test_qa_stats_4.fastq 546: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/4.fastq 1>actual/4.fastq.stdout 2>actual/4.fastq.stderr" 546: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 546: Test timeout computed to be: 1500 410/426 Test #546: Test_qa_stats_4.fastq .................................. Passed 0.01 sec test 547 Start 547: Test_qa_stats_6.0.fastq 547: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/6.0.fastq 1>actual/6.0.fastq.stdout 2>actual/6.0.fastq.stderr" 547: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 547: Test timeout computed to be: 1500 411/426 Test #547: Test_qa_stats_6.0.fastq ................................ Passed 0.01 sec test 548 Start 548: Test_qa_stats_7.1.fastq 548: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/7.1.fastq 1>actual/7.1.fastq.stdout 2>actual/7.1.fastq.stderr" 548: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 548: Test timeout computed to be: 1500 412/426 Test #548: Test_qa_stats_7.1.fastq ................................ Passed 0.01 sec test 549 Start 549: Test_qa_stats_7.2.fastq 549: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/7.2.fastq 1>actual/7.2.fastq.stdout 2>actual/7.2.fastq.stderr" 549: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 549: Test timeout computed to be: 1500 413/426 Test #549: Test_qa_stats_7.2.fastq ................................ Passed 0.01 sec test 550 Start 550: Test_qa_stats_7.3.fastq 550: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/7.3.fastq 1>actual/7.3.fastq.stdout 2>actual/7.3.fastq.stderr" 550: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 550: Test timeout computed to be: 1500 414/426 Test #550: Test_qa_stats_7.3.fastq ................................ Passed 0.01 sec test 551 Start 551: Test_qa_stats_8.0.fastq 551: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/8.0.fastq 1>actual/8.0.fastq.stdout 2>actual/8.0.fastq.stderr" 551: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 551: Test timeout computed to be: 1500 415/426 Test #551: Test_qa_stats_8.0.fastq ................................ Passed 0.01 sec test 552 Start 552: Test_qa_stats_8.1.fastq 552: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/8.1.fastq 1>actual/8.1.fastq.stdout 2>actual/8.1.fastq.stderr" 552: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 552: Test timeout computed to be: 1500 416/426 Test #552: Test_qa_stats_8.1.fastq ................................ Passed 0.01 sec test 553 Start 553: Test_qa_stats_9.0.fastq 553: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/9.0.fastq 1>actual/9.0.fastq.stdout 2>actual/9.0.fastq.stderr" 553: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 553: Test timeout computed to be: 1500 417/426 Test #553: Test_qa_stats_9.0.fastq ................................ Passed 0.01 sec test 554 Start 554: Test_qa_stats_ERR3487613.fasta 554: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/ERR3487613.fasta 1>actual/ERR3487613.fasta.stdout 2>actual/ERR3487613.fasta.stderr" 554: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 554: Test timeout computed to be: 1500 418/426 Test #554: Test_qa_stats_ERR3487613.fasta ......................... Passed 0.01 sec test 555 Start 555: Test_qa_stats_unaligned.fastq 555: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/unaligned.fastq 1>actual/unaligned.fastq.stdout 2>actual/unaligned.fastq.stderr" 555: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 555: Test timeout computed to be: 1500 419/426 Test #555: Test_qa_stats_unaligned.fastq .......................... Passed 0.01 sec test 556 Start 556: Test_qa_stats_Finger_1 556: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats input/1.1.fastq --fingerprint" "." "Test_qa_stats_Finger_1" 556: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 556: Test timeout computed to be: 1500 556: running Test_qa_stats_Finger_1 556: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats input/1.1.fastq --fingerprint 1>./actual/Test_qa_stats_Finger_1/stdout 2>./actual/Test_qa_stats_Finger_1/stderr 420/426 Test #556: Test_qa_stats_Finger_1 ................................. Passed 0.02 sec test 557 Start 557: Test_qa_stats_Finger_2 557: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/runtestcase.sh "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats input/001.R1.fastq -f" "." "Test_qa_stats_Finger_2" 557: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 557: Test timeout computed to be: 1500 557: running Test_qa_stats_Finger_2 557: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/qa-stats input/001.R1.fastq -f 1>./actual/Test_qa_stats_Finger_2/stdout 2>./actual/Test_qa_stats_Finger_2/stderr 421/426 Test #557: Test_qa_stats_Finger_2 ................................. Passed 0.02 sec test 558 Start 558: Test_Scripts_prepare-sra-names 558: Test command: /usr/bin/perl "test-prepare-sra-names.pl" 558: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/scripts 558: Test timeout computed to be: 1500 422/426 Test #558: Test_Scripts_prepare-sra-names ......................... Passed 0.21 sec test 559 Start 559: Test_Scripts_fix-sra-names 559: Test command: /usr/bin/perl "test-fix-sra-names.pl" 559: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/scripts 559: Test timeout computed to be: 1500 423/426 Test #559: Test_Scripts_fix-sra-names ............................. Passed 0.10 sec test 560 Start 560: Test_Scripts_prepare-sra-names-py 560: Test command: /usr/bin/perl "test-prepare-sra-names-py.pl" 560: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/scripts 560: Test timeout computed to be: 1500 424/426 Test #560: Test_Scripts_prepare-sra-names-py ...................... Passed 0.79 sec test 561 Start 561: Test_Scripts_fix-sra-names-py 561: Test command: /usr/bin/perl "test-fix-sra-names-py.pl" 561: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/scripts 561: Test timeout computed to be: 1500 425/426 Test #561: Test_Scripts_fix-sra-names-py .......................... Passed 0.48 sec test 562 Start 562: Test_GeneralWriterPy 562: Test command: /usr/bin/sh "-c" "/usr/bin/python3 GeneralWriter_Test.py >actual/Test_GeneralWriterPy.gw && /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu/bin/gw-dumper -v actual/Test_GeneralWriterPy.gw >actual/Test_GeneralWriterPy.stdout && diff actual/Test_GeneralWriterPy.stdout expected/Test_GeneralWriterPy.stdout" 562: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/python 562: Test timeout computed to be: 1500 426/426 Test #562: Test_GeneralWriterPy ................................... Passed 0.06 sec 100% tests passed, 0 tests failed out of 426 Total Test time (real) = 111.96 sec make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake debian/rules override_dh_prep make[1]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' dh_prep -X debian/tmp make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' dh_auto_install cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/reproducible-path/sra-sdk-3.2.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/sra-sdk-3.2.1+dfsg -B/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" mkdir: cannot create directory ‘/usr/bin/ncbi’: Permission denied cp: cannot create regular file '/usr/bin/ncbi/default.kfg': No such file or directory mkdir: cannot create directory ‘/usr/bin/ncbi’: Permission denied cp: cannot create regular file '/usr/bin/ncbi/certs.kfg': No such file or directory mkdir: cannot create directory ‘/usr/bin/ncbi’: Permission denied cp: cannot create regular file '/usr/bin/ncbi/vdb-copy.kfg': No such file or directory -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libncbi-ngs-c++.a.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libncbi-ngs-c++.a.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libncbi-ngs-c++.a -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libncbi-ngs-c++-static.a -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ncbi-vdb/NGS.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/examples/FragTest.cpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/examples/AlignTest.cpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/examples/AlignSliceTest.cpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/examples/PileupTest.cpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/examples/RefTest.cpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/examples/DumpReferenceFASTA.cpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/examples/expected.txt -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/examples/Makefile -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/examples/README.txt -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libngs-c++.a.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libngs-c++.a.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libngs-c++.a -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libngs-c++-static.a -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libngs-c++.so.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libngs-c++.so -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libncbi-ngs.a.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libncbi-ngs.a.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libncbi-ngs.a -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libncbi-ngs-static.a -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libncbi-ngs.so.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libncbi-ngs.so.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libncbi-ngs.so -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/Statistics.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/FragmentIterator.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/Pileup.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReadGroup.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ErrorMsg.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReferenceSequence.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/Alignment.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReadIterator.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReferenceIterator.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/PileupIterator.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/ReadItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/defs.h -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/ErrorMsg.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/PileupEventItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/ReferenceSequenceItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/ReadCollectionItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/FragmentItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/Refcount.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/ReadGroupItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/AlignmentItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/StringItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/PileupItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/ReferenceItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/StatisticsItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/win -- Installing: 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-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/sam-dump.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/sam-dump-orig.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/sam-dump.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/fasterq-dump -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/fasterq-dump.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/fasterq-dump-orig.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/fasterq-dump.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-dump -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-dump.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-dump-orig.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-dump.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-validate.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-validate.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-validate -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/check-corrupt.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/check-corrupt.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/check-corrupt -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-decrypt.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-decrypt.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-decrypt -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-encrypt.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-encrypt.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-encrypt -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/srapath -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/srapath.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/srapath-orig.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/srapath.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/sra-stat.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/sra-stat.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/sra-stat -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/ngs-pileup.3.2.1 -- 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/dump-ref-fasta -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/make-read-filter.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/make-read-filter.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/make-read-filter -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/md5cp.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/md5cp.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/md5cp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/meta-cmp.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/meta-cmp.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/meta-cmp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/meta-copy.3.2.1 -- 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/read-filter-redact -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-copy.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-copy.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-copy -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-diff.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-diff.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-diff -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-sql.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-sql.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/vdb-sql -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/fastconv.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/fastconv.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/fastconv -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/crc32sum.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/crc32sum.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/crc32sum -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/test-download.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/test-download.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/test-download -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/kdb-index.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/kdb-index.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/kdb-index -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/pacbio-correct.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/pacbio-correct.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/pacbio-correct -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/schema-replace.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/schema-replace.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/schema-replace -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/sortreadtest.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/sortreadtest.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/sortreadtest -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/rowwritetest.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/rowwritetest.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/rowwritetest -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/samview-util.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/samview-util.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/samview-util -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/testld.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/testld.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/testld -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/txt2kdb.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/txt2kdb.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/txt2kdb -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/pileup-stats.3.2.1 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/pileup-stats.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/bin/pileup-stats make[2]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu' # build/install.sh /usr/include/ncbi-vdb/kfg/ncbi \ # /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy \ # debian/sra-toolkit/etc/ncbi \ # debian/sra-toolkit/etc/ncbi \ # debian/sra-toolkit/usr/bin \ # debian/sra-toolkit/usr/lib/aarch64-linux-gnu \ # /build/reproducible-path/sra-sdk-3.2.1+dfsg/shared/kfgsums build/install-kfg.sh default.kfg /usr/include/ncbi-vdb/kfg/ncbi debian/sra-toolkit/etc/ncbi \ /usr/include/ncbi-vdb/kfg/ncbi/kfgsums build/install-kfg.sh certs.kfg /usr/include/ncbi-vdb/kfg/ncbi debian/sra-toolkit/etc/ncbi \ /usr/include/ncbi-vdb/kfg/ncbi/kfgsums build/install-kfg.sh vdb-copy.kfg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy \ debian/sra-toolkit/etc/ncbi /build/reproducible-path/sra-sdk-3.2.1+dfsg/shared/kfgsums d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-a \ --exclude-la \ --movedev "debian/*/usr/lib/aarch64-linux-gnu/libncbi-ngs.a*" \ usr/lib/aarch64-linux-gnu \ --override "s/libncbi-vdb3-dev/libncbi-vdb-dev/" \ debian/*/usr/lib/aarch64-linux-gnu/libncbi-ngs.so Library package automatic movement utility --> libncbi-vdb-dev package exists. set -e install -d -m 755 debian/libncbi-ngs-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libncbi-ngs3/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libncbi-ngs.so debian/libncbi-ngs-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libncbi-ngs.so.3 debian/libncbi-ngs3/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libncbi-ngs.so.3.2.1 debian/libncbi-ngs3/usr/lib/aarch64-linux-gnu PKGDEV=libncbi-ngs-dev PKGSHL=libncbi-ngs3 install -d -m 755 debian/libncbi-ngs-dev/usr/lib/aarch64-linux-gnu mv debian/*/usr/lib/aarch64-linux-gnu/libncbi-ngs.a* debian/libncbi-ngs-dev/usr/lib/aarch64-linux-gnu d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-a \ --exclude-la \ --movedev "debian/*/usr/lib/aarch64-linux-gnu/lib*c++.a*" \ usr/lib/aarch64-linux-gnu \ --movedev "debian/tmp/usr/include/*" usr/include \ --ignorelibdep \ debian/*/usr/lib/aarch64-linux-gnu/libngs-c++.so | \ tee /dev/stderr | LC_ALL=C grep '^[a-z]' | sh Library package automatic movement utility set -e install -d -m 755 debian/libngs-c++-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libngs-c++3/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libngs-c++.so debian/libngs-c++-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libngs-c++.so.3 debian/libngs-c++3/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 debian/libngs-c++3/usr/lib/aarch64-linux-gnu PKGDEV=libngs-c++-dev PKGSHL=libngs-c++3 install -d -m 755 debian/libngs-c++-dev/usr/lib/aarch64-linux-gnu mv debian/*/usr/lib/aarch64-linux-gnu/lib*c++.a* debian/libngs-c++-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libngs-c++-dev/usr/include mv debian/tmp/usr/include/* debian/libngs-c++-dev/usr/include E: line [Section: \(libs\|non-free/libs\)] not found in debian/control section for libngs-c++3 E: line [Section: \(devel\|libdevel\|non-free/libdevel\)] not found in debian/control section for libngs-c++-dev E: line [Depends:.*[$]{shlibs:Depends}] not found in debian/control section for libngs-c++3 Error occurred, aborting make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' # upstream installs versioned *.a libs - we only want a single version for d in debian/lib*-dev/usr/lib/aarch64-linux-gnu ; do \ for slib in $d/lib*.a ; do \ mv $d/`readlink $slib` $slib ; \ mv $d/`readlink $slib` $slib ; \ done ; \ done ls -l debian/tmp/usr/bin total 121352 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 abi-dump -> abi-dump.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 abi-dump.3 -> abi-dump.3.2.1 -rwxr-xr-x 1 sbuild sbuild 310192 Jan 18 05:56 abi-dump.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 abi-load -> abi-load.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 abi-load.3 -> abi-load.3.2.1 -rwxr-xr-x 1 sbuild sbuild 861376 Jan 18 05:56 abi-load.3.2.1 lrwxrwxrwx 1 sbuild sbuild 13 Jan 18 06:01 align-cache -> align-cache.3 lrwxrwxrwx 1 sbuild sbuild 17 Jan 18 06:01 align-cache.3 -> align-cache.3.2.1 -rwxr-xr-x 1 sbuild sbuild 286576 Jan 18 05:56 align-cache.3.2.1 lrwxrwxrwx 1 sbuild sbuild 12 Jan 18 06:01 align-info -> align-info.3 lrwxrwxrwx 1 sbuild sbuild 16 Jan 18 06:01 align-info.3 -> align-info.3.2.1 -rwxr-xr-x 1 sbuild sbuild 113152 Jan 18 05:56 align-info.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 bam-load -> bam-load.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 bam-load.3 -> bam-load.3.2.1 -rwxr-xr-x 1 sbuild sbuild 14217328 Jan 18 05:57 bam-load.3.2.1 lrwxrwxrwx 1 sbuild sbuild 11 Jan 18 06:01 cache-mgr -> cache-mgr.3 lrwxrwxrwx 1 sbuild sbuild 15 Jan 18 06:01 cache-mgr.3 -> cache-mgr.3.2.1 -rwxr-xr-x 1 sbuild sbuild 132992 Jan 18 05:56 cache-mgr.3.2.1 lrwxrwxrwx 1 sbuild sbuild 11 Jan 18 06:01 ccextract -> ccextract.3 lrwxrwxrwx 1 sbuild sbuild 15 Jan 18 06:01 ccextract.3 -> ccextract.3.2.1 -rwxr-xr-x 1 sbuild sbuild 317752 Jan 18 05:56 ccextract.3.2.1 lrwxrwxrwx 1 sbuild sbuild 9 Jan 18 06:01 cg-load -> cg-load.3 lrwxrwxrwx 1 sbuild sbuild 13 Jan 18 06:01 cg-load.3 -> cg-load.3.2.1 -rwxr-xr-x 1 sbuild sbuild 694944 Jan 18 05:56 cg-load.3.2.1 lrwxrwxrwx 1 sbuild sbuild 15 Jan 18 06:01 check-corrupt -> check-corrupt.3 lrwxrwxrwx 1 sbuild sbuild 19 Jan 18 06:01 check-corrupt.3 -> check-corrupt.3.2.1 -rwxr-xr-x 1 sbuild sbuild 301456 Jan 18 05:56 check-corrupt.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 check-redact -> check-redact.3 lrwxrwxrwx 1 sbuild sbuild 18 Jan 18 06:01 check-redact.3 -> check-redact.3.2.1 -rwxr-xr-x 1 sbuild sbuild 112504 Jan 18 05:56 check-redact.3.2.1 lrwxrwxrwx 1 sbuild sbuild 18 Jan 18 06:01 compute-coverage -> compute-coverage.3 lrwxrwxrwx 1 sbuild sbuild 22 Jan 18 06:01 compute-coverage-ngs -> compute-coverage-ngs.3 lrwxrwxrwx 1 sbuild sbuild 26 Jan 18 06:01 compute-coverage-ngs.3 -> compute-coverage-ngs.3.2.1 -rwxr-xr-x 1 sbuild sbuild 2240256 Jan 18 05:57 compute-coverage-ngs.3.2.1 lrwxrwxrwx 1 sbuild sbuild 22 Jan 18 06:01 compute-coverage.3 -> compute-coverage.3.2.1 -rwxr-xr-x 1 sbuild sbuild 146568 Jan 18 05:56 compute-coverage.3.2.1 lrwxrwxrwx 1 sbuild sbuild 9 Jan 18 06:01 copycat -> copycat.3 lrwxrwxrwx 1 sbuild sbuild 13 Jan 18 06:01 copycat.3 -> copycat.3.2.1 -rwxr-xr-x 1 sbuild sbuild 551784 Jan 18 05:56 copycat.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 crc32sum -> crc32sum.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 crc32sum.3 -> crc32sum.3.2.1 -rwxr-xr-x 1 sbuild sbuild 99672 Jan 18 05:56 crc32sum.3.2.1 lrwxrwxrwx 1 sbuild sbuild 22 Jan 18 06:01 dump-blob-boundaries -> dump-blob-boundaries.3 lrwxrwxrwx 1 sbuild sbuild 26 Jan 18 06:01 dump-blob-boundaries.3 -> dump-blob-boundaries.3.2.1 -rwxr-xr-x 1 sbuild sbuild 87160 Jan 18 05:56 dump-blob-boundaries.3.2.1 lrwxrwxrwx 1 sbuild sbuild 16 Jan 18 06:01 dump-ref-fasta -> dump-ref-fasta.3 lrwxrwxrwx 1 sbuild sbuild 20 Jan 18 06:01 dump-ref-fasta.3 -> dump-ref-fasta.3.2.1 -rwxr-xr-x 1 sbuild sbuild 2120160 Jan 18 05:57 dump-ref-fasta.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 fastconv -> fastconv.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 fastconv.3 -> fastconv.3.2.1 -rwxr-xr-x 1 sbuild sbuild 5103088 Jan 18 05:57 fastconv.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 fasterq-dump -> fasterq-dump.3 -rwxr-xr-x 1 sbuild sbuild 966176 Jan 18 05:56 fasterq-dump-orig.3.2.1 lrwxrwxrwx 1 sbuild sbuild 18 Jan 18 06:01 fasterq-dump.3 -> fasterq-dump.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 fasterq-dump.3.2.1 -> sratools.3.2.1 lrwxrwxrwx 1 sbuild sbuild 12 Jan 18 06:01 fastq-dump -> fastq-dump.3 -rwxr-xr-x 1 sbuild sbuild 369824 Jan 18 05:56 fastq-dump-orig.3.2.1 lrwxrwxrwx 1 sbuild sbuild 16 Jan 18 06:01 fastq-dump.3 -> fastq-dump.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 fastq-dump.3.2.1 -> sratools.3.2.1 lrwxrwxrwx 1 sbuild sbuild 12 Jan 18 06:01 fastq-load -> fastq-load.3 lrwxrwxrwx 1 sbuild sbuild 16 Jan 18 06:01 fastq-load.3 -> fastq-load.3.2.1 -rwxr-xr-x 1 sbuild sbuild 900968 Jan 18 05:56 fastq-load.3.2.1 lrwxrwxrwx 1 sbuild sbuild 16 Jan 18 06:01 general-loader -> general-loader.3 lrwxrwxrwx 1 sbuild sbuild 20 Jan 18 06:01 general-loader.3 -> general-loader.3.2.1 -rwxr-xr-x 1 sbuild sbuild 1616184 Jan 18 05:56 general-loader.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 helicos-load -> helicos-load.3 lrwxrwxrwx 1 sbuild sbuild 18 Jan 18 06:01 helicos-load.3 -> helicos-load.3.2.1 -rwxr-xr-x 1 sbuild sbuild 836704 Jan 18 05:56 helicos-load.3.2.1 lrwxrwxrwx 1 sbuild sbuild 15 Jan 18 06:01 illumina-dump -> illumina-dump.3 lrwxrwxrwx 1 sbuild sbuild 19 Jan 18 06:01 illumina-dump.3 -> illumina-dump.3.2.1 -rwxr-xr-x 1 sbuild sbuild 295904 Jan 18 05:56 illumina-dump.3.2.1 lrwxrwxrwx 1 sbuild sbuild 15 Jan 18 06:01 illumina-load -> illumina-load.3 lrwxrwxrwx 1 sbuild sbuild 19 Jan 18 06:01 illumina-load.3 -> illumina-load.3.2.1 -rwxr-xr-x 1 sbuild sbuild 868672 Jan 18 05:56 illumina-load.3.2.1 lrwxrwxrwx 1 sbuild sbuild 5 Jan 18 06:01 kar -> kar.3 lrwxrwxrwx 1 sbuild sbuild 6 Jan 18 06:01 kar+ -> kar+.3 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 kar+.3 -> kar+.3.2.1 -rwxr-xr-x 1 sbuild sbuild 283344 Jan 18 05:56 kar+.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 kar+meta -> kar+meta.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 kar+meta.3 -> kar+meta.3.2.1 -rwxr-xr-x 1 sbuild sbuild 163328 Jan 18 05:56 kar+meta.3.2.1 lrwxrwxrwx 1 sbuild sbuild 9 Jan 18 06:01 kar.3 -> kar.3.2.1 -rwxr-xr-x 1 sbuild sbuild 244992 Jan 18 05:56 kar.3.2.1 lrwxrwxrwx 1 sbuild sbuild 11 Jan 18 06:01 kdb-index -> kdb-index.3 lrwxrwxrwx 1 sbuild sbuild 15 Jan 18 06:01 kdb-index.3 -> kdb-index.3.2.1 -rwxr-xr-x 1 sbuild sbuild 98216 Jan 18 05:56 kdb-index.3.2.1 lrwxrwxrwx 1 sbuild sbuild 9 Jan 18 06:01 kdbmeta -> kdbmeta.3 lrwxrwxrwx 1 sbuild sbuild 13 Jan 18 06:01 kdbmeta.3 -> kdbmeta.3.2.1 -rwxr-xr-x 1 sbuild sbuild 126112 Jan 18 05:56 kdbmeta.3.2.1 lrwxrwxrwx 1 sbuild sbuild 11 Jan 18 06:01 latf-load -> latf-load.3 lrwxrwxrwx 1 sbuild sbuild 15 Jan 18 06:01 latf-load.3 -> latf-load.3.2.1 -rwxr-xr-x 1 sbuild sbuild 560232 Jan 18 05:57 latf-load.3.2.1 lrwxrwxrwx 1 sbuild sbuild 18 Jan 18 06:01 make-read-filter -> make-read-filter.3 lrwxrwxrwx 1 sbuild sbuild 22 Jan 18 06:01 make-read-filter.3 -> make-read-filter.3.2.1 -rwxr-xr-x 1 sbuild sbuild 222344 Jan 18 05:56 make-read-filter.3.2.1 lrwxrwxrwx 1 sbuild sbuild 7 Jan 18 06:01 md5cp -> md5cp.3 lrwxrwxrwx 1 sbuild sbuild 11 Jan 18 06:01 md5cp.3 -> md5cp.3.2.1 -rwxr-xr-x 1 sbuild sbuild 109536 Jan 18 05:56 md5cp.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 meta-cmp -> meta-cmp.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 meta-cmp.3 -> meta-cmp.3.2.1 -rwxr-xr-x 1 sbuild sbuild 101744 Jan 18 05:56 meta-cmp.3.2.1 lrwxrwxrwx 1 sbuild sbuild 11 Jan 18 06:01 meta-copy -> meta-copy.3 lrwxrwxrwx 1 sbuild sbuild 15 Jan 18 06:01 meta-copy.3 -> meta-copy.3.2.1 -rwxr-xr-x 1 sbuild sbuild 101760 Jan 18 05:56 meta-copy.3.2.1 lrwxrwxrwx 1 sbuild sbuild 13 Jan 18 06:01 meta-repair -> meta-repair.3 lrwxrwxrwx 1 sbuild sbuild 17 Jan 18 06:01 meta-repair.3 -> meta-repair.3.2.1 -rwxr-xr-x 1 sbuild sbuild 201704 Jan 18 05:56 meta-repair.3.2.1 lrwxrwxrwx 1 sbuild sbuild 12 Jan 18 06:01 ngs-pileup -> ngs-pileup.3 lrwxrwxrwx 1 sbuild sbuild 16 Jan 18 06:01 ngs-pileup.3 -> ngs-pileup.3.2.1 -rwxr-xr-x 1 sbuild sbuild 2613384 Jan 18 05:57 ngs-pileup.3.2.1 lrwxrwxrwx 1 sbuild sbuild 16 Jan 18 06:01 pacbio-correct -> pacbio-correct.3 lrwxrwxrwx 1 sbuild sbuild 20 Jan 18 06:01 pacbio-correct.3 -> pacbio-correct.3.2.1 -rwxr-xr-x 1 sbuild sbuild 95344 Jan 18 05:56 pacbio-correct.3.2.1 lrwxrwxrwx 1 sbuild sbuild 13 Jan 18 06:01 pacbio-load -> pacbio-load.3 lrwxrwxrwx 1 sbuild sbuild 17 Jan 18 06:01 pacbio-load.3 -> pacbio-load.3.2.1 -rwxr-xr-x 1 sbuild sbuild 537648 Jan 18 05:56 pacbio-load.3.2.1 lrwxrwxrwx 1 sbuild sbuild 16 Jan 18 06:01 pacbio-loadxml -> pacbio-loadxml.3 lrwxrwxrwx 1 sbuild sbuild 20 Jan 18 06:01 pacbio-loadxml.3 -> pacbio-loadxml.3.2.1 -rwxr-xr-x 1 sbuild sbuild 824040 Jan 18 05:56 pacbio-loadxml.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 pileup-stats -> pileup-stats.3 lrwxrwxrwx 1 sbuild sbuild 18 Jan 18 06:01 pileup-stats.3 -> pileup-stats.3.2.1 -rwxr-xr-x 1 sbuild sbuild 2845320 Jan 18 05:57 pileup-stats.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 prefetch -> prefetch.3 -rwxr-xr-x 1 sbuild sbuild 520056 Jan 18 05:56 prefetch-orig.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 prefetch.3 -> prefetch.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 prefetch.3.2.1 -> sratools.3.2.1 lrwxrwxrwx 1 sbuild sbuild 11 Jan 18 06:01 rcexplain -> rcexplain.3 lrwxrwxrwx 1 sbuild sbuild 15 Jan 18 06:01 rcexplain.3 -> rcexplain.3.2.1 -rwxr-xr-x 1 sbuild sbuild 90928 Jan 18 05:56 rcexplain.3.2.1 lrwxrwxrwx 1 sbuild sbuild 20 Jan 18 06:01 read-filter-redact -> read-filter-redact.3 lrwxrwxrwx 1 sbuild sbuild 24 Jan 18 06:01 read-filter-redact.3 -> read-filter-redact.3.2.1 -rwxr-xr-x 1 sbuild sbuild 122520 Jan 18 05:56 read-filter-redact.3.2.1 lrwxrwxrwx 1 sbuild sbuild 15 Jan 18 06:01 ref-variation -> ref-variation.3 lrwxrwxrwx 1 sbuild sbuild 19 Jan 18 06:01 ref-variation.3 -> ref-variation.3.2.1 -rwxr-xr-x 1 sbuild sbuild 2953080 Jan 18 05:57 ref-variation.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 rowwritetest -> rowwritetest.3 lrwxrwxrwx 1 sbuild sbuild 18 Jan 18 06:01 rowwritetest.3 -> rowwritetest.3.2.1 -rwxr-xr-x 1 sbuild sbuild 107856 Jan 18 05:56 rowwritetest.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 sam-dump -> sam-dump.3 -rwxr-xr-x 1 sbuild sbuild 885064 Jan 18 05:56 sam-dump-orig.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 sam-dump.3 -> sam-dump.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 sam-dump.3.2.1 -> sratools.3.2.1 lrwxrwxrwx 1 sbuild sbuild 9 Jan 18 06:01 samview -> samview.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 samview-util -> samview-util.3 lrwxrwxrwx 1 sbuild sbuild 18 Jan 18 06:01 samview-util.3 -> samview-util.3.2.1 -rwxr-xr-x 1 sbuild sbuild 87728 Jan 18 05:56 samview-util.3.2.1 lrwxrwxrwx 1 sbuild sbuild 13 Jan 18 06:01 samview.3 -> samview.3.2.1 -rwxr-xr-x 1 sbuild sbuild 302856 Jan 18 05:56 samview.3.2.1 lrwxrwxrwx 1 sbuild sbuild 16 Jan 18 06:01 schema-replace -> schema-replace.3 lrwxrwxrwx 1 sbuild sbuild 20 Jan 18 06:01 schema-replace.3 -> schema-replace.3.2.1 -rwxr-xr-x 1 sbuild sbuild 102416 Jan 18 05:56 schema-replace.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 sff-dump -> sff-dump.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 sff-dump.3 -> sff-dump.3.2.1 -rwxr-xr-x 1 sbuild sbuild 283504 Jan 18 05:56 sff-dump.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 sff-load -> sff-load.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 sff-load.3 -> sff-load.3.2.1 -rwxr-xr-x 1 sbuild sbuild 868000 Jan 18 05:56 sff-load.3.2.1 lrwxrwxrwx 1 sbuild sbuild 7 Jan 18 06:01 sharq -> sharq.3 lrwxrwxrwx 1 sbuild sbuild 11 Jan 18 06:01 sharq.3 -> sharq.3.2.1 -rwxr-xr-x 1 sbuild sbuild 45437904 Jan 18 05:58 sharq.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 sortreadtest -> sortreadtest.3 lrwxrwxrwx 1 sbuild sbuild 18 Jan 18 06:01 sortreadtest.3 -> sortreadtest.3.2.1 -rwxr-xr-x 1 sbuild sbuild 99112 Jan 18 05:56 sortreadtest.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 sra-info -> sra-info.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 sra-info.3 -> sra-info.3.2.1 -rwxr-xr-x 1 sbuild sbuild 2904016 Jan 18 05:56 sra-info.3.2.1 lrwxrwxrwx 1 sbuild sbuild 12 Jan 18 06:01 sra-pileup -> sra-pileup.3 -rwxr-xr-x 1 sbuild sbuild 457328 Jan 18 05:56 sra-pileup-orig.3.2.1 lrwxrwxrwx 1 sbuild sbuild 16 Jan 18 06:01 sra-pileup.3 -> sra-pileup.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 sra-pileup.3.2.1 -> sratools.3.2.1 lrwxrwxrwx 1 sbuild sbuild 12 Jan 18 06:01 sra-search -> sra-search.3 lrwxrwxrwx 1 sbuild sbuild 16 Jan 18 06:01 sra-search.3 -> sra-search.3.2.1 -rwxr-xr-x 1 sbuild sbuild 4245176 Jan 18 05:57 sra-search.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 sra-sort -> sra-sort.3 lrwxrwxrwx 1 sbuild sbuild 13 Jan 18 06:01 sra-sort-cg -> sra-sort-cg.3 lrwxrwxrwx 1 sbuild sbuild 17 Jan 18 06:01 sra-sort-cg.3 -> sra-sort-cg.3.2.1 -rwxr-xr-x 1 sbuild sbuild 837280 Jan 18 05:56 sra-sort-cg.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 sra-sort.3 -> sra-sort.3.2.1 -rwxr-xr-x 1 sbuild sbuild 837232 Jan 18 05:56 sra-sort.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 sra-stat -> sra-stat.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 sra-stat.3 -> sra-stat.3.2.1 -rwxr-xr-x 1 sbuild sbuild 353024 Jan 18 05:56 sra-stat.3.2.1 lrwxrwxrwx 1 sbuild sbuild 9 Jan 18 06:01 srapath -> srapath.3 -rwxr-xr-x 1 sbuild sbuild 297832 Jan 18 05:56 srapath-orig.3.2.1 lrwxrwxrwx 1 sbuild sbuild 13 Jan 18 06:01 srapath.3 -> srapath.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 srapath.3.2.1 -> sratools.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 sratools -> sratools.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 sratools.3 -> sratools.3.2.1 -rwxr-xr-x 1 sbuild sbuild 5536464 Jan 18 05:56 sratools.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 srf-load -> srf-load.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 srf-load.3 -> srf-load.3.2.1 -rwxr-xr-x 1 sbuild sbuild 1011544 Jan 18 05:56 srf-load.3.2.1 lrwxrwxrwx 1 sbuild sbuild 15 Jan 18 06:01 test-download -> test-download.3 lrwxrwxrwx 1 sbuild sbuild 19 Jan 18 06:01 test-download.3 -> test-download.3.2.1 -rwxr-xr-x 1 sbuild sbuild 108816 Jan 18 05:56 test-download.3.2.1 lrwxrwxrwx 1 sbuild sbuild 24 Jan 18 06:01 test-read-write-cursor -> test-read-write-cursor.3 lrwxrwxrwx 1 sbuild sbuild 28 Jan 18 06:01 test-read-write-cursor.3 -> test-read-write-cursor.3.2.1 -rwxr-xr-x 1 sbuild sbuild 94960 Jan 18 05:56 test-read-write-cursor.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 test-sra -> test-sra.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 test-sra.3 -> test-sra.3.2.1 -rwxr-xr-x 1 sbuild sbuild 354576 Jan 18 05:56 test-sra.3.2.1 lrwxrwxrwx 1 sbuild sbuild 8 Jan 18 06:01 testld -> testld.3 lrwxrwxrwx 1 sbuild sbuild 12 Jan 18 06:01 testld.3 -> testld.3.2.1 -rwxr-xr-x 1 sbuild sbuild 96008 Jan 18 05:56 testld.3.2.1 lrwxrwxrwx 1 sbuild sbuild 9 Jan 18 06:01 txt2kdb -> txt2kdb.3 lrwxrwxrwx 1 sbuild sbuild 13 Jan 18 06:01 txt2kdb.3 -> txt2kdb.3.2.1 -rwxr-xr-x 1 sbuild sbuild 102456 Jan 18 05:56 txt2kdb.3.2.1 lrwxrwxrwx 1 sbuild sbuild 12 Jan 18 06:01 var-expand -> var-expand.3 lrwxrwxrwx 1 sbuild sbuild 16 Jan 18 06:01 var-expand.3 -> var-expand.3.2.1 -rwxr-xr-x 1 sbuild sbuild 2048696 Jan 18 05:57 var-expand.3.2.1 lrwxrwxrwx 1 sbuild sbuild 12 Jan 18 06:01 vdb-config -> vdb-config.3 lrwxrwxrwx 1 sbuild sbuild 16 Jan 18 06:01 vdb-config.3 -> vdb-config.3.2.1 -rwxr-xr-x 1 sbuild sbuild 2690848 Jan 18 05:57 vdb-config.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 vdb-copy -> vdb-copy.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 vdb-copy.3 -> vdb-copy.3.2.1 -rwxr-xr-x 1 sbuild sbuild 355080 Jan 18 05:56 vdb-copy.3.2.1 lrwxrwxrwx 1 sbuild sbuild 13 Jan 18 06:01 vdb-decrypt -> vdb-decrypt.3 lrwxrwxrwx 1 sbuild sbuild 17 Jan 18 06:01 vdb-decrypt.3 -> vdb-decrypt.3.2.1 -rwxr-xr-x 1 sbuild sbuild 128864 Jan 18 05:56 vdb-decrypt.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 vdb-diff -> vdb-diff.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 vdb-diff.3 -> vdb-diff.3.2.1 -rwxr-xr-x 1 sbuild sbuild 224720 Jan 18 05:56 vdb-diff.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 vdb-dump -> vdb-dump.3 -rwxr-xr-x 1 sbuild sbuild 934056 Jan 18 05:56 vdb-dump-orig.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 vdb-dump.3 -> vdb-dump.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 vdb-dump.3.2.1 -> sratools.3.2.1 lrwxrwxrwx 1 sbuild sbuild 13 Jan 18 06:01 vdb-encrypt -> vdb-encrypt.3 lrwxrwxrwx 1 sbuild sbuild 17 Jan 18 06:01 vdb-encrypt.3 -> vdb-encrypt.3.2.1 -rwxr-xr-x 1 sbuild sbuild 127360 Jan 18 05:56 vdb-encrypt.3.2.1 lrwxrwxrwx 1 sbuild sbuild 10 Jan 18 06:01 vdb-lock -> vdb-lock.3 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 vdb-lock.3 -> vdb-lock.3.2.1 -rwxr-xr-x 1 sbuild sbuild 91752 Jan 18 05:56 vdb-lock.3.2.1 lrwxrwxrwx 1 sbuild sbuild 9 Jan 18 06:01 vdb-sql -> vdb-sql.3 lrwxrwxrwx 1 sbuild sbuild 13 Jan 18 06:01 vdb-sql.3 -> vdb-sql.3.2.1 -rwxr-xr-x 1 sbuild sbuild 5354984 Jan 18 05:57 vdb-sql.3.2.1 lrwxrwxrwx 1 sbuild sbuild 12 Jan 18 06:01 vdb-unlock -> vdb-unlock.3 lrwxrwxrwx 1 sbuild sbuild 16 Jan 18 06:01 vdb-unlock.3 -> vdb-unlock.3.2.1 -rwxr-xr-x 1 sbuild sbuild 91768 Jan 18 05:56 vdb-unlock.3.2.1 lrwxrwxrwx 1 sbuild sbuild 14 Jan 18 06:01 vdb-validate -> vdb-validate.3 lrwxrwxrwx 1 sbuild sbuild 18 Jan 18 06:01 vdb-validate.3 -> vdb-validate.3.2.1 -rwxr-xr-x 1 sbuild sbuild 286456 Jan 18 05:56 vdb-validate.3.2.1 cd debian/tmp/usr/bin && \ for bin in *-orig.* ; do \ base=${bin%-orig.*} && \ vbase=$(readlink "$(readlink $base)") && \ vdriver=$(readlink "$vbase") && \ mv -v $bin $base-orig && \ ln -snfv ${vdriver%%.[0-9]*} $vbase || exit $? ; \ done && \ for bin in *[a-z+] ; do \ bin2=$(readlink $bin) ; \ bin3=$(readlink "$bin2") ; \ case $bin2 in \ $bin.* ) rm -v $bin2 && mv -v $bin3 $bin || exit $? ;; \ esac ; \ done renamed 'fasterq-dump-orig.3.2.1' -> 'fasterq-dump-orig' 'fasterq-dump.3.2.1' -> 'sratools' renamed 'fastq-dump-orig.3.2.1' -> 'fastq-dump-orig' 'fastq-dump.3.2.1' -> 'sratools' renamed 'prefetch-orig.3.2.1' -> 'prefetch-orig' 'prefetch.3.2.1' -> 'sratools' renamed 'sam-dump-orig.3.2.1' -> 'sam-dump-orig' 'sam-dump.3.2.1' -> 'sratools' renamed 'sra-pileup-orig.3.2.1' -> 'sra-pileup-orig' 'sra-pileup.3.2.1' -> 'sratools' renamed 'srapath-orig.3.2.1' -> 'srapath-orig' 'srapath.3.2.1' -> 'sratools' renamed 'vdb-dump-orig.3.2.1' -> 'vdb-dump-orig' 'vdb-dump.3.2.1' -> 'sratools' removed 'abi-dump.3' renamed 'abi-dump.3.2.1' -> 'abi-dump' removed 'abi-load.3' renamed 'abi-load.3.2.1' -> 'abi-load' removed 'align-cache.3' renamed 'align-cache.3.2.1' -> 'align-cache' removed 'align-info.3' renamed 'align-info.3.2.1' -> 'align-info' removed 'bam-load.3' renamed 'bam-load.3.2.1' -> 'bam-load' removed 'cache-mgr.3' renamed 'cache-mgr.3.2.1' -> 'cache-mgr' removed 'ccextract.3' renamed 'ccextract.3.2.1' -> 'ccextract' removed 'cg-load.3' renamed 'cg-load.3.2.1' -> 'cg-load' removed 'check-corrupt.3' renamed 'check-corrupt.3.2.1' -> 'check-corrupt' removed 'check-redact.3' renamed 'check-redact.3.2.1' -> 'check-redact' removed 'compute-coverage.3' renamed 'compute-coverage.3.2.1' -> 'compute-coverage' removed 'compute-coverage-ngs.3' renamed 'compute-coverage-ngs.3.2.1' -> 'compute-coverage-ngs' removed 'copycat.3' renamed 'copycat.3.2.1' -> 'copycat' removed 'crc32sum.3' renamed 'crc32sum.3.2.1' -> 'crc32sum' removed 'dump-blob-boundaries.3' renamed 'dump-blob-boundaries.3.2.1' -> 'dump-blob-boundaries' removed 'dump-ref-fasta.3' renamed 'dump-ref-fasta.3.2.1' -> 'dump-ref-fasta' removed 'fastconv.3' renamed 'fastconv.3.2.1' -> 'fastconv' removed 'fasterq-dump.3' renamed 'fasterq-dump.3.2.1' -> 'fasterq-dump' removed 'fastq-dump.3' renamed 'fastq-dump.3.2.1' -> 'fastq-dump' removed 'fastq-load.3' renamed 'fastq-load.3.2.1' -> 'fastq-load' removed 'general-loader.3' renamed 'general-loader.3.2.1' -> 'general-loader' removed 'helicos-load.3' renamed 'helicos-load.3.2.1' -> 'helicos-load' removed 'illumina-dump.3' renamed 'illumina-dump.3.2.1' -> 'illumina-dump' removed 'illumina-load.3' renamed 'illumina-load.3.2.1' -> 'illumina-load' removed 'kar.3' renamed 'kar.3.2.1' -> 'kar' removed 'kar+.3' renamed 'kar+.3.2.1' -> 'kar+' removed 'kar+meta.3' renamed 'kar+meta.3.2.1' -> 'kar+meta' removed 'kdb-index.3' renamed 'kdb-index.3.2.1' -> 'kdb-index' removed 'kdbmeta.3' renamed 'kdbmeta.3.2.1' -> 'kdbmeta' removed 'latf-load.3' renamed 'latf-load.3.2.1' -> 'latf-load' removed 'make-read-filter.3' renamed 'make-read-filter.3.2.1' -> 'make-read-filter' removed 'md5cp.3' renamed 'md5cp.3.2.1' -> 'md5cp' removed 'meta-cmp.3' renamed 'meta-cmp.3.2.1' -> 'meta-cmp' removed 'meta-copy.3' renamed 'meta-copy.3.2.1' -> 'meta-copy' removed 'meta-repair.3' renamed 'meta-repair.3.2.1' -> 'meta-repair' removed 'ngs-pileup.3' renamed 'ngs-pileup.3.2.1' -> 'ngs-pileup' removed 'pacbio-correct.3' renamed 'pacbio-correct.3.2.1' -> 'pacbio-correct' removed 'pacbio-load.3' renamed 'pacbio-load.3.2.1' -> 'pacbio-load' removed 'pacbio-loadxml.3' renamed 'pacbio-loadxml.3.2.1' -> 'pacbio-loadxml' removed 'pileup-stats.3' renamed 'pileup-stats.3.2.1' -> 'pileup-stats' removed 'prefetch.3' renamed 'prefetch.3.2.1' -> 'prefetch' removed 'rcexplain.3' renamed 'rcexplain.3.2.1' -> 'rcexplain' removed 'read-filter-redact.3' renamed 'read-filter-redact.3.2.1' -> 'read-filter-redact' removed 'ref-variation.3' renamed 'ref-variation.3.2.1' -> 'ref-variation' removed 'rowwritetest.3' renamed 'rowwritetest.3.2.1' -> 'rowwritetest' removed 'sam-dump.3' renamed 'sam-dump.3.2.1' -> 'sam-dump' removed 'samview.3' renamed 'samview.3.2.1' -> 'samview' removed 'samview-util.3' renamed 'samview-util.3.2.1' -> 'samview-util' removed 'schema-replace.3' renamed 'schema-replace.3.2.1' -> 'schema-replace' removed 'sff-dump.3' renamed 'sff-dump.3.2.1' -> 'sff-dump' removed 'sff-load.3' renamed 'sff-load.3.2.1' -> 'sff-load' removed 'sharq.3' renamed 'sharq.3.2.1' -> 'sharq' removed 'sortreadtest.3' renamed 'sortreadtest.3.2.1' -> 'sortreadtest' removed 'sra-info.3' renamed 'sra-info.3.2.1' -> 'sra-info' removed 'sra-pileup.3' renamed 'sra-pileup.3.2.1' -> 'sra-pileup' removed 'sra-search.3' renamed 'sra-search.3.2.1' -> 'sra-search' removed 'sra-sort.3' renamed 'sra-sort.3.2.1' -> 'sra-sort' removed 'sra-sort-cg.3' renamed 'sra-sort-cg.3.2.1' -> 'sra-sort-cg' removed 'sra-stat.3' renamed 'sra-stat.3.2.1' -> 'sra-stat' removed 'srapath.3' renamed 'srapath.3.2.1' -> 'srapath' removed 'sratools.3' renamed 'sratools.3.2.1' -> 'sratools' removed 'srf-load.3' renamed 'srf-load.3.2.1' -> 'srf-load' removed 'test-download.3' renamed 'test-download.3.2.1' -> 'test-download' removed 'test-read-write-cursor.3' renamed 'test-read-write-cursor.3.2.1' -> 'test-read-write-cursor' removed 'test-sra.3' renamed 'test-sra.3.2.1' -> 'test-sra' removed 'testld.3' renamed 'testld.3.2.1' -> 'testld' removed 'txt2kdb.3' renamed 'txt2kdb.3.2.1' -> 'txt2kdb' removed 'var-expand.3' renamed 'var-expand.3.2.1' -> 'var-expand' removed 'vdb-config.3' renamed 'vdb-config.3.2.1' -> 'vdb-config' removed 'vdb-copy.3' renamed 'vdb-copy.3.2.1' -> 'vdb-copy' removed 'vdb-decrypt.3' renamed 'vdb-decrypt.3.2.1' -> 'vdb-decrypt' removed 'vdb-diff.3' renamed 'vdb-diff.3.2.1' -> 'vdb-diff' removed 'vdb-dump.3' renamed 'vdb-dump.3.2.1' -> 'vdb-dump' removed 'vdb-encrypt.3' renamed 'vdb-encrypt.3.2.1' -> 'vdb-encrypt' removed 'vdb-lock.3' renamed 'vdb-lock.3.2.1' -> 'vdb-lock' removed 'vdb-sql.3' renamed 'vdb-sql.3.2.1' -> 'vdb-sql' removed 'vdb-unlock.3' renamed 'vdb-unlock.3.2.1' -> 'vdb-unlock' removed 'vdb-validate.3' renamed 'vdb-validate.3.2.1' -> 'vdb-validate' mkdir debian/tmp/usr/lib/sra-toolkit mv debian/tmp/usr/bin/sratools debian/tmp/usr/lib/sra-toolkit for x in debian/tmp/usr/bin/*-orig; do \ mv -v $x debian/tmp/usr/lib/sra-toolkit ; \ ln -snfv ../lib/sra-toolkit/sratools ${x%-orig} ; \ done renamed 'debian/tmp/usr/bin/fasterq-dump-orig' -> 'debian/tmp/usr/lib/sra-toolkit/fasterq-dump-orig' 'debian/tmp/usr/bin/fasterq-dump' -> '../lib/sra-toolkit/sratools' renamed 'debian/tmp/usr/bin/fastq-dump-orig' -> 'debian/tmp/usr/lib/sra-toolkit/fastq-dump-orig' 'debian/tmp/usr/bin/fastq-dump' -> '../lib/sra-toolkit/sratools' renamed 'debian/tmp/usr/bin/prefetch-orig' -> 'debian/tmp/usr/lib/sra-toolkit/prefetch-orig' 'debian/tmp/usr/bin/prefetch' -> '../lib/sra-toolkit/sratools' renamed 'debian/tmp/usr/bin/sam-dump-orig' -> 'debian/tmp/usr/lib/sra-toolkit/sam-dump-orig' 'debian/tmp/usr/bin/sam-dump' -> '../lib/sra-toolkit/sratools' renamed 'debian/tmp/usr/bin/sra-pileup-orig' -> 'debian/tmp/usr/lib/sra-toolkit/sra-pileup-orig' 'debian/tmp/usr/bin/sra-pileup' -> '../lib/sra-toolkit/sratools' renamed 'debian/tmp/usr/bin/srapath-orig' -> 'debian/tmp/usr/lib/sra-toolkit/srapath-orig' 'debian/tmp/usr/bin/srapath' -> '../lib/sra-toolkit/sratools' renamed 'debian/tmp/usr/bin/vdb-dump-orig' -> 'debian/tmp/usr/lib/sra-toolkit/vdb-dump-orig' 'debian/tmp/usr/bin/vdb-dump' -> '../lib/sra-toolkit/sratools' dh_install # remove susipcious file which is not executable and conflicts with package magic rm -f debian/*/usr/bin/magic pybuild --install --name ngs -d ngs/ngs-python -s distutils I: pybuild base:384: /usr/bin/python3.14 setup.py install --root /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py creating /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/LibChecker.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/ReadCollection.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/Pileup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/PileupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/Statistics.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/PileupEventIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/Read.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/Reference.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/LibManager.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/__init__.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/PileupEvent.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/FragmentIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/ErrorMsg.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/ReadGroupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/Alignment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/ReadGroup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/ReadIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/Package.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/AlignmentIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/ReferenceIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/Fragment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/String.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/ReferenceSequence.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs copying ngs/Refcount.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs running install_lib creating /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages creating /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/LibChecker.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/ReadCollection.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/Pileup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/PileupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/Statistics.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/PileupEventIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/Read.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/Reference.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/LibManager.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/__init__.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/PileupEvent.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/FragmentIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/ErrorMsg.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/ReadGroupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/Alignment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/ReadGroup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/ReadIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/Package.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/AlignmentIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/ReferenceIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/Fragment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/String.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/ReferenceSequence.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.14_ngs/build/ngs/Refcount.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/LibChecker.py to LibChecker.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/ReadCollection.py to ReadCollection.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/Pileup.py to Pileup.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/PileupIterator.py to PileupIterator.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/Statistics.py to Statistics.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/PileupEventIterator.py to PileupEventIterator.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/Read.py to Read.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/Reference.py to Reference.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/LibManager.py to LibManager.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/__init__.py to __init__.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/PileupEvent.py to PileupEvent.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/FragmentIterator.py to FragmentIterator.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/ErrorMsg.py to ErrorMsg.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/ReadGroupIterator.py to ReadGroupIterator.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/Alignment.py to Alignment.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/ReadGroup.py to ReadGroup.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/ReadIterator.py to ReadIterator.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/Package.py to Package.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/AlignmentIterator.py to AlignmentIterator.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/ReferenceIterator.py to ReferenceIterator.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/Fragment.py to Fragment.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/String.py to String.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/ReferenceSequence.py to ReferenceSequence.cpython-314.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs/Refcount.py to Refcount.cpython-314.pyc running install_egg_info running egg_info writing ngs.egg-info/PKG-INFO writing dependency_links to ngs.egg-info/dependency_links.txt writing top-level names to ngs.egg-info/top_level.txt reading manifest file 'ngs.egg-info/SOURCES.txt' writing manifest file 'ngs.egg-info/SOURCES.txt' Copying ngs.egg-info to /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.14/dist-packages/ngs-1.0.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:384: /usr/bin/python3 setup.py install --root /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py creating /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/LibChecker.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/ReadCollection.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/Pileup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/PileupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/Statistics.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/PileupEventIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/Read.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/Reference.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/LibManager.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/__init__.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/PileupEvent.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/FragmentIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/ErrorMsg.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/ReadGroupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/Alignment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/ReadGroup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/ReadIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/Package.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/AlignmentIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/ReferenceIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/Fragment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/String.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/ReferenceSequence.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/Refcount.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs running install_lib creating /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages creating /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/LibChecker.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReadCollection.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Pileup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/PileupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Statistics.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/PileupEventIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Read.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Reference.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/LibManager.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/__init__.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/PileupEvent.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/FragmentIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ErrorMsg.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReadGroupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Alignment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReadGroup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReadIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Package.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/AlignmentIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReferenceIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Fragment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/String.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReferenceSequence.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Refcount.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/LibChecker.py to LibChecker.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReadCollection.py to ReadCollection.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Pileup.py to Pileup.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/PileupIterator.py to PileupIterator.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Statistics.py to Statistics.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/PileupEventIterator.py to PileupEventIterator.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Read.py to Read.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Reference.py to Reference.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/LibManager.py to LibManager.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/PileupEvent.py to PileupEvent.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/FragmentIterator.py to FragmentIterator.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ErrorMsg.py to ErrorMsg.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReadGroupIterator.py to ReadGroupIterator.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Alignment.py to Alignment.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReadGroup.py to ReadGroup.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReadIterator.py to ReadIterator.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Package.py to Package.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/AlignmentIterator.py to AlignmentIterator.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReferenceIterator.py to ReferenceIterator.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Fragment.py to Fragment.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/String.py to String.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReferenceSequence.py to ReferenceSequence.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Refcount.py to Refcount.cpython-313.pyc running install_egg_info running egg_info writing ngs.egg-info/PKG-INFO writing dependency_links to ngs.egg-info/dependency_links.txt writing top-level names to ngs.egg-info/top_level.txt reading manifest file 'ngs.egg-info/SOURCES.txt' writing manifest file 'ngs.egg-info/SOURCES.txt' Copying ngs.egg-info to /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs-1.0.egg-info Skipping SOURCES.txt running install_scripts make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' jh_installjavadoc -a -O--buildsystem=cmake Duplicate specification "A" for option "A" dh_installdocs -a -O--buildsystem=cmake dh_installchangelogs -a -O--buildsystem=cmake debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' dh_installexamples find debian/*/ -name .gitignore -delete make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' dh_python3 -a -O--buildsystem=cmake E: dh_python3 dh_python3:108: no package to act on (python3-foo or one with ${python3:Depends} in Depends) dh_installsystemduser -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake debian/rules execute_before_dh_link make[1]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' # Putting the upstream version number (without the dfsg part) at the end of # symlink source in the -jni package. sed -e 's/\(#STRIPPED_UPSTREAM_VERSION#\)/\13.2.1+dfsg/' \ -e 's/#STRIPPED_UPSTREAM_VERSION#\(.*\)+dfsg[0-9]*/\1/' \ -e 's/\$[({]DEB_HOST_MULTIARCH[)}]/aarch64-linux-gnu/g' \ debian/libngs-jni.links.in > debian/libngs-jni.links make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' dh_link -a -O--buildsystem=cmake jh_installlibs -a -O--buildsystem=cmake jh_classpath -a -O--buildsystem=cmake jh_manifest -a -O--buildsystem=cmake Duplicate specification "version|V" for option "V" jh_exec -a -O--buildsystem=cmake jh_depends -a -O--buildsystem=cmake mh_installpoms -a -O--buildsystem=cmake mh_linkjars --skip-clean-poms -a -O--buildsystem=cmake dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake dh_fixperms -a -O--buildsystem=cmake dh_missing -a -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: symbol KConfigRelease used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries dpkg-shlibdeps: warning: symbol KVectorSetBool used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries dpkg-shlibdeps: warning: symbol xcStorageExhausted used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries dpkg-shlibdeps: warning: symbol ctx_clear used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries dpkg-shlibdeps: warning: symbol KNSManagerRelease used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries dpkg-shlibdeps: warning: symbol string_size used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PageMapIteratorNext_Ext used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries dpkg-shlibdeps: warning: symbol VSchemaRelease used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries dpkg-shlibdeps: warning: symbol xcParamUnexpected used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries dpkg-shlibdeps: warning: symbol KIndexFindText used by debian/libngs-c++3/usr/lib/aarch64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries dpkg-shlibdeps: warning: 133 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--buildsystem=cmake dh_gencontrol -a -O--buildsystem=cmake dpkg-gencontrol: warning: package libncbi-ngs-dev: substitution variable ${devlibs:Depends} unused, but is defined dpkg-gencontrol: warning: Depends field of package libngs-jni: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake dpkg-deb: building package 'libngs-c++3' in '../libngs-c++3_3.2.1+dfsg-5+b1_arm64.deb'. dpkg-deb: building package 'sra-toolkit' in '../sra-toolkit_3.2.1+dfsg-5+b1_arm64.deb'. dpkg-deb: building package 'libncbi-ngs3-dbgsym' in '../libncbi-ngs3-dbgsym_3.2.1+dfsg-5+b1_arm64.deb'. dpkg-deb: building package 'libngs-java' in '../libngs-java_3.2.1+dfsg-5+b1_arm64.deb'. dpkg-deb: building package 'libngs-c++-dev' in '../libngs-c++-dev_3.2.1+dfsg-5+b1_arm64.deb'. dpkg-deb: building package 'libngs-jni' in '../libngs-jni_3.2.1+dfsg-5+b1_arm64.deb'. dpkg-deb: building package 'libngs-c++3-dbgsym' in '../libngs-c++3-dbgsym_3.2.1+dfsg-5+b1_arm64.deb'. dpkg-deb: building package 'libncbi-ngs-dev' in '../libncbi-ngs-dev_3.2.1+dfsg-5+b1_arm64.deb'. dpkg-deb: building package 'libncbi-ngs3' in '../libncbi-ngs3_3.2.1+dfsg-5+b1_arm64.deb'. dpkg-deb: building package 'sra-toolkit-dbgsym' in '../sra-toolkit-dbgsym_3.2.1+dfsg-5+b1_arm64.deb'. dpkg-genbuildinfo --build=any -O../sra-sdk_3.2.1+dfsg-5+b1_arm64.buildinfo dpkg-genchanges --build=any -O../sra-sdk_3.2.1+dfsg-5+b1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-01-18T06:02:43Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 18 Jan 2026 06:02:45 +0000 | +------------------------------------------------------------------------------+ sra-sdk_3.2.1+dfsg-5+b1_arm64.changes: -------------------------------------- Format: 1.8 Date: Sat, 17 Jan 2026 00:49:48 +0000 Source: sra-sdk (3.2.1+dfsg-5) Binary: libncbi-ngs-dev libncbi-ngs3 libncbi-ngs3-dbgsym libngs-c++-dev libngs-c++3 libngs-c++3-dbgsym libngs-java libngs-jni sra-toolkit sra-toolkit-dbgsym Binary-Only: yes Architecture: arm64 Version: 3.2.1+dfsg-5+b1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: arm Build Daemon (arm-conova-04) Description: libncbi-ngs-dev - Next Generation Sequencing language Bindings (C++ development) libncbi-ngs3 - Next Generation Sequencing language Bindings (full runtime) libngs-c++-dev - Next Generation Sequencing language Bindings (C++ development) libngs-c++3 - Next Generation Sequencing language Bindings (C++ runtime) libngs-java - Next Generation Sequencing language Bindings (Java bindings) libngs-jni - Next Generation Sequencing language Bindings (Java native binding sra-toolkit - utilities for the NCBI Sequence Read Archive Changes: sra-sdk (3.2.1+dfsg-5+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for arm64; no source changes. * Rebuild to enable GCS on arm64 Checksums-Sha1: 5a49feab0c324183eb96bd58962f3ce661263da8 171100 libncbi-ngs-dev_3.2.1+dfsg-5+b1_arm64.deb 848e9fa30edcc29e8194da6879b36c49927a318a 695344 libncbi-ngs3-dbgsym_3.2.1+dfsg-5+b1_arm64.deb 3efa319b06166d9c916ed7d608e9414bff5ef884 143156 libncbi-ngs3_3.2.1+dfsg-5+b1_arm64.deb ee71bd380264817f44f18a29e81865383bae3a06 190184 libngs-c++-dev_3.2.1+dfsg-5+b1_arm64.deb 113c7c6d539ba388bc4e1e031712f2b808c16345 516296 libngs-c++3-dbgsym_3.2.1+dfsg-5+b1_arm64.deb 4b147eb48aa9312abbc43810f84d6f1a527382d0 124448 libngs-c++3_3.2.1+dfsg-5+b1_arm64.deb f4d03669cb26342235a53151f300f87f110669f1 114312 libngs-java_3.2.1+dfsg-5+b1_arm64.deb 8a38a124dff00cba191e0b213ab6bf983fb09784 28088 libngs-jni_3.2.1+dfsg-5+b1_arm64.deb 5197c0900c0d55e8de1b3f66d238b046190915d9 17760 sra-sdk_3.2.1+dfsg-5+b1_arm64.buildinfo 1fcf8082f56db2570c12260ad6b2c6fa892ce623 27557300 sra-toolkit-dbgsym_3.2.1+dfsg-5+b1_arm64.deb d66484326a081be818c3f2efc13522c003097eb1 6980216 sra-toolkit_3.2.1+dfsg-5+b1_arm64.deb Checksums-Sha256: dd45f16413e71e965c4492df9a0a35bc0e58560414714d2cc89d3de27e3db382 171100 libncbi-ngs-dev_3.2.1+dfsg-5+b1_arm64.deb 91a9ae40a59c2296ca7b003f044444bbf97a7352984c88eb028beec3727e1e72 695344 libncbi-ngs3-dbgsym_3.2.1+dfsg-5+b1_arm64.deb eb9cca5021f9269938a6e3b90ffd5361ceebc7849b4d30ddf6b33f657cc47718 143156 libncbi-ngs3_3.2.1+dfsg-5+b1_arm64.deb fa6525445e845c8c85692a28ea53ae17140170435e3eca7f98ede53b789e81a8 190184 libngs-c++-dev_3.2.1+dfsg-5+b1_arm64.deb ad2b32119b0a087be2cef2065682e125fe02fa9427c415242d0e5a9ef4e311e4 516296 libngs-c++3-dbgsym_3.2.1+dfsg-5+b1_arm64.deb 91da3f4167d215961f0ac5135733940726ab8476d8bfe05497a9582b294c3e53 124448 libngs-c++3_3.2.1+dfsg-5+b1_arm64.deb df31dd581035fb03fb9d97f6c8a2e0062454609edd97228338971e778805502a 114312 libngs-java_3.2.1+dfsg-5+b1_arm64.deb b34f738fbb2185c6396b3ee96e15ededd072a1931d6737c068e3a296a2524319 28088 libngs-jni_3.2.1+dfsg-5+b1_arm64.deb f9ea862aebcea9a9f25e47dbfa485cff55f3cec8868c1ff29fcac8f00c314a1d 17760 sra-sdk_3.2.1+dfsg-5+b1_arm64.buildinfo ad095b995ea8071a57793509984d1980b2db31cbce0e8b98d6ef8da1f1479d55 27557300 sra-toolkit-dbgsym_3.2.1+dfsg-5+b1_arm64.deb 3054805c74ffbf2734906cec8cf61ebffd4f3870c969035d23e5d2f1d4dcacae 6980216 sra-toolkit_3.2.1+dfsg-5+b1_arm64.deb Files: 22f54747da3adb8a957192ceb8911141 171100 libdevel optional libncbi-ngs-dev_3.2.1+dfsg-5+b1_arm64.deb 50329e235914fe90446532c6619a07fb 695344 debug optional libncbi-ngs3-dbgsym_3.2.1+dfsg-5+b1_arm64.deb 931d62a982c70b18ed5e074f6c00830d 143156 libs optional libncbi-ngs3_3.2.1+dfsg-5+b1_arm64.deb 8448e86affcfb0c5c5d3836b3d3de192 190184 libdevel optional libngs-c++-dev_3.2.1+dfsg-5+b1_arm64.deb 2068227ddeea11cb64d69885b9b092a4 516296 debug optional libngs-c++3-dbgsym_3.2.1+dfsg-5+b1_arm64.deb 02467ac140442230dafac5f9c091b5af 124448 libs optional libngs-c++3_3.2.1+dfsg-5+b1_arm64.deb f044f8ce5bf1a3bddbd43d6eea2ed323 114312 java optional libngs-java_3.2.1+dfsg-5+b1_arm64.deb 4a2c120f6a4fadfd712f71e77fcf96df 28088 java optional libngs-jni_3.2.1+dfsg-5+b1_arm64.deb 9e1cb30429ca38f67ce51e3eac2902b1 17760 science optional sra-sdk_3.2.1+dfsg-5+b1_arm64.buildinfo 3cdd0bdcd0507f065b9b5d1a5cf7fe32 27557300 debug optional sra-toolkit-dbgsym_3.2.1+dfsg-5+b1_arm64.deb 9bdf5f309ea395ef482d7f612935acf6 6980216 science optional 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1:1.18.1-3), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-1), binfmt-support (= 2.2.2-8), binutils (= 2.45.50.20251209-1), binutils-aarch64-linux-gnu (= 2.45.50.20251209-1), binutils-common (= 2.45.50.20251209-1), bison (= 2:3.8.2+dfsg-1+b2), bsdextrautils (= 2.41.3-3), build-essential (= 12.12), bzip2 (= 1.0.8-6+b1), ca-certificates (= 20250419), ca-certificates-java (= 20240118), cmake (= 4.2.1-2), cmake-data (= 4.2.1-2), comerr-dev (= 2.1-1.47.2-3+b8), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-15 (= 15.2.0-12), cpp-15-aarch64-linux-gnu (= 15.2.0-12), cpp-aarch64-linux-gnu (= 4:15.2.0-4), d-shlibs (= 0.109), dash (= 0.5.12-12), dbus (= 1.16.2-2+b1), dbus-bin (= 1.16.2-2+b1), dbus-daemon (= 1.16.2-2+b1), dbus-session-bus-common (= 1.16.2-2), dbus-system-bus-common (= 1.16.2-2), dbus-user-session (= 1.16.2-2+b1), dconf-gsettings-backend (= 0.49.0-4), dconf-service (= 0.49.0-4), dctrl-tools (= 2.24-3+b1), debconf (= 1.5.91), debhelper (= 13.29), debian-archive-keyring (= 2025.1), debianutils (= 5.23.2), default-jdk (= 2:1.21-76), default-jdk-headless (= 2:1.21-76), default-jre (= 2:1.21-76), default-jre-headless (= 2:1.21-76), devscripts (= 2.26.4), dh-autoreconf (= 21), dh-python (= 7.20251231), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.23.3), dpkg-dev (= 1.23.3), dwz (= 0.16-2), fastjar (= 2:0.98-7+b1), file (= 1:5.46-5+b1), findutils (= 4.10.0-3), flex (= 2.6.4-8.2+b5), fontconfig (= 2.17.1-3), fontconfig-config (= 2.17.1-3), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-12), g++-15-aarch64-linux-gnu (= 15.2.0-12), g++-aarch64-linux-gnu (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-15 (= 15.2.0-12), gcc-15-aarch64-linux-gnu (= 15.2.0-12), gcc-15-base (= 15.2.0-12), gcc-aarch64-linux-gnu (= 4:15.2.0-4), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), gosop (= 1.1.0-3+b2), gpg (= 2.4.8-5), gpg-agent (= 2.4.8-5), gpgconf (= 2.4.8-5), grep (= 3.12-1), groff-base (= 1.23.0-10), gtk-update-icon-cache (= 4.20.3+ds-3), gzip (= 1.13-1), hdf5-helpers (= 1.14.5+repack-4), hicolor-icon-theme (= 0.18-2), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), jarwrapper (= 0.81), java-common (= 0.76), javahelper (= 0.81), krb5-multidev (= 1.22.1-2), libabsl-dev (= 20240722.0-4), libabsl20240722 (= 20240722.0-4), libacl1 (= 2.3.2-2+b1), libaec-dev (= 1.1.4-2+b1), libaec0 (= 1.1.4-2+b1), libapparmor1 (= 4.1.3-1), libapt-pkg7.0 (= 3.1.13), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.8.5-1), libasan8 (= 15.2.0-12), libasound2-data (= 1.2.15.1-1), libasound2t64 (= 1.2.15.1-1), libassuan9 (= 3.0.2-2+b1), libatk-bridge2.0-0t64 (= 2.59.0-1), libatk1.0-0t64 (= 2.59.0-1), libatomic1 (= 15.2.0-12), libatspi2.0-0t64 (= 2.59.0-1), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libavahi-client3 (= 0.8-17), libavahi-common-data (= 0.8-17), libavahi-common3 (= 0.8-17), libb-hooks-op-check-perl (= 0.22-3+b2), libbinutils (= 2.45.50.20251209-1), libblkid1 (= 2.41.3-3), libbrotli-dev (= 1.1.0-2+b9), libbrotli1 (= 1.1.0-2+b9), libbsd0 (= 0.12.2-2+b1), libbz2-1.0 (= 1.0.8-6+b1), libbz2-dev (= 1.0.8-6+b1), libc-bin (= 2.42-7), libc-dev-bin (= 2.42-7), libc-gconv-modules-extra (= 2.42-7), libc6 (= 2.42-7), libc6-dev (= 2.42-7), libcairo-gobject2 (= 1.18.4-3), libcairo2 (= 1.18.4-3), libcap-ng0 (= 0.8.5-4+b2), libcap2 (= 1:2.75-10+b5), libcc1-0 (= 15.2.0-12), libclass-method-modifiers-perl (= 2.15-1), libclass-xsaccessor-perl (= 1.19-4+b5), libclone-perl (= 0.47-1+b1), libcloudproviders0 (= 0.4.0-1), libcolord2 (= 1.4.8-2), libcom-err2 (= 1.47.2-3+b8), libconfig-inifiles-perl (= 3.000003-4), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.45.50.20251209-1), libctf0 (= 2.45.50.20251209-1), libcups2t64 (= 2.4.16-1), libcurl4-openssl-dev (= 8.18.0-2), libcurl4t64 (= 8.18.0-2), libdatrie1 (= 0.2.14-1), libdb5.3t64 (= 5.3.28+dfsg2-11), libdbus-1-3 (= 1.16.2-2+b1), libdconf1 (= 0.49.0-4), libdebconfclient0 (= 0.282+b2), libdebhelper-perl (= 13.29), libdeflate0 (= 1.23-2+b1), libdevel-callchecker-perl (= 0.009-2), libdpkg-perl (= 1.23.3), libdrm-amdgpu1 (= 2.4.129-1), libdrm-common (= 2.4.129-1), libdrm2 (= 2.4.129-1), libdynaloader-functions-perl (= 0.004-2), libedit2 (= 3.1-20251016-1), libelf1t64 (= 0.194-1), libencode-locale-perl (= 1.05-3), libepoxy0 (= 1.5.10-2+b1), libevent-2.1-7t64 (= 2.1.12-stable-10+b2), libexpat1 (= 2.7.3-1), libffi8 (= 3.5.2-3+b1), libfile-dirlist-perl (= 0.05-3), libfile-homedir-perl (= 1.006-2), libfile-listing-perl (= 6.16-1), libfile-stripnondeterminism-perl (= 1.15.0-1), libfile-touch-perl (= 0.12-2), libfile-which-perl (= 1.27-2), libfontconfig1 (= 2.17.1-3), libfreetype6 (= 2.14.1+dfsg-2), libfribidi0 (= 1.0.16-5), libgbm1 (= 25.3.3-1), libgcc-15-dev (= 15.2.0-12), libgcc-s1 (= 15.2.0-12), libgcrypt20 (= 1.11.2-3+b1), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libgdk-pixbuf-2.0-0 (= 2.44.4+dfsg-1), libgdk-pixbuf2.0-common (= 2.44.4+dfsg-1), libgfortran5 (= 15.2.0-12), libgif7 (= 5.2.2-1+b2), libgl1 (= 1.7.0-3), libgl1-mesa-dri (= 25.3.3-1), libglib2.0-0t64 (= 2.86.3-4), libglvnd0 (= 1.7.0-3), libglx-mesa0 (= 25.3.3-1), libglx0 (= 1.7.0-3), libgmp-dev (= 2:6.3.0+dfsg-5+b1), libgmp10 (= 2:6.3.0+dfsg-5+b1), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b1), libgnutls-dane0t64 (= 3.8.11-3), libgnutls-openssl27t64 (= 3.8.11-3), libgnutls28-dev (= 3.8.11-3), libgnutls30t64 (= 3.8.11-3), libgomp1 (= 15.2.0-12), libgpg-error0 (= 1.58-1+b1), libgprofng0 (= 2.45.50.20251209-1), libgraphite2-3 (= 1.3.14-11+b1), libgssapi-krb5-2 (= 1.22.1-2), libgssrpc4t64 (= 1.22.1-2), libgtk-3-0t64 (= 3.24.51-4), libgtk-3-common (= 3.24.51-4), libharfbuzz0b (= 12.3.0-4), libhdf5-310 (= 1.14.5+repack-4), libhdf5-cpp-310 (= 1.14.5+repack-4), libhdf5-dev (= 1.14.5+repack-4), libhdf5-fortran-310 (= 1.14.5+repack-4), libhdf5-hl-310 (= 1.14.5+repack-4), libhdf5-hl-cpp-310 (= 1.14.5+repack-4), libhdf5-hl-fortran-310 (= 1.14.5+repack-4), libhogweed6t64 (= 3.10.2-1), libhtml-parser-perl (= 3.83-1+b2), libhtml-tagset-perl (= 3.24-1), libhtml-tree-perl (= 5.07-3), libhttp-cookies-perl (= 6.11-1), libhttp-date-perl (= 6.06-1), libhttp-message-perl (= 7.01-1), libhttp-negotiate-perl (= 6.01-2), libhwasan0 (= 15.2.0-12), libidn2-0 (= 2.3.8-4+b1), libidn2-dev (= 2.3.8-4+b1), libimport-into-perl (= 1.002005-2), libio-html-perl (= 1.004-3), libio-socket-ssl-perl (= 2.098-1), libio-string-perl (= 1.08-4), libisl23 (= 0.27-1), libitm1 (= 15.2.0-12), libjansson4 (= 2.14-2+b4), libjbig0 (= 2.1-6.1+b3), libjpeg-dev (= 1:2.1.5-4), libjpeg62-turbo (= 1:2.1.5-4), libjpeg62-turbo-dev (= 1:2.1.5-4), libjsoncpp26 (= 1.9.6-5), libk5crypto3 (= 1.22.1-2), libkadm5clnt-mit12 (= 1.22.1-2), libkadm5srv-mit12 (= 1.22.1-2), libkdb5-10t64 (= 1.22.1-2), libkeyutils1 (= 1.6.3-6+b1), libkrb5-3 (= 1.22.1-2), libkrb5-dev (= 1.22.1-2), libkrb5support0 (= 1.22.1-2), libksba8 (= 1.6.7-2+b2), liblcms2-2 (= 2.17-1), libldap-dev (= 2.6.10+dfsg-1), libldap2 (= 2.6.10+dfsg-1), liblerc4 (= 4.0.0+ds-5+b1), libllvm21 (= 1:21.1.8-1+b1), liblsan0 (= 15.2.0-12), liblwp-mediatypes-perl (= 6.04-2), liblwp-protocol-https-perl (= 6.14-1), liblz4-1 (= 1.10.0-6), liblzma-dev (= 5.8.2-2), liblzma5 (= 5.8.2-2), libmagic-dev (= 1:5.46-5+b1), libmagic-mgc (= 1:5.46-5+b1), libmagic1t64 (= 1:5.46-5+b1), libmbedcrypto16 (= 3.6.5-0.1), libmbedtls-dev (= 3.6.5-0.1), libmbedtls21 (= 3.6.5-0.1), libmbedx509-7 (= 3.6.5-0.1), libmd0 (= 1.1.0-2+b1), libmodule-runtime-perl (= 0.018-1), libmoo-perl (= 2.005005-1), libmount1 (= 2.41.3-3), libmpc3 (= 1.3.1-2), libmpfr6 (= 4.2.2-2), libncbi-vdb-dev (= 3.2.1+dfsg-2), libncbi-vdb3 (= 3.2.1+dfsg-2), libncbi-wvdb-dev (= 3.2.1+dfsg-2), libncbi-wvdb3 (= 3.2.1+dfsg-2), libncursesw6 (= 6.6+20251231-1), libnet-http-perl (= 6.24-1), libnet-ssleay-perl (= 1.94-3), libnettle8t64 (= 3.10.2-1), libnghttp2-14 (= 1.64.0-1.1+b1), libnghttp2-dev (= 1.64.0-1.1+b1), libnghttp3-9 (= 1.12.0-1), libnghttp3-dev (= 1.12.0-1), libngtcp2-16 (= 1.16.0-1), libngtcp2-crypto-ossl-dev (= 1.16.0-1), libngtcp2-crypto-ossl0 (= 1.16.0-1), libngtcp2-dev (= 1.16.0-1), libnpth0t64 (= 1.8-3+b1), libnspr4 (= 2:4.38.2-1), libnss3 (= 2:3.120-1), libp11-kit-dev (= 0.25.10-1+b1), libp11-kit0 (= 0.25.10-1+b1), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam-systemd (= 259-1), libpam0g (= 1.7.0-5), libpango-1.0-0 (= 1.57.0-1), libpangocairo-1.0-0 (= 1.57.0-1), libpangoft2-1.0-0 (= 1.57.0-1), libparams-classify-perl (= 0.015-2+b4), libpcre2-8-0 (= 10.46-1), libpcsclite1 (= 2.4.1-1), libperl5.40 (= 5.40.1-7), libpipeline1 (= 1.5.8-2), libpixman-1-0 (= 0.46.4-1), libpkgconf3 (= 1.8.1-4), libpng16-16t64 (= 1.6.53-1), libproc2-0 (= 2:4.0.4-9+b1), libpsl-dev (= 0.21.2-1.1+b2), libpsl5t64 (= 0.21.2-1.1+b2), libpython3-stdlib (= 3.13.9-3), libpython3.13-minimal (= 3.13.11-1+b1), libpython3.13-stdlib (= 3.13.11-1+b1), libpython3.14-minimal (= 3.14.2-1+b1), libpython3.14-stdlib (= 3.14.2-1+b1), libre2-11 (= 20250805-1+b2), libre2-dev (= 20250805-1+b2), libreadline8t64 (= 8.3-3+b1), librhash1 (= 1.4.6-1.1), librole-tiny-perl (= 2.002004-1), librtmp-dev (= 2.4+20151223.gitfa8646d.1-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-3), libsam-extract-dev (= 3.2.1+dfsg-2), libsam-extract3 (= 3.2.1+dfsg-2), libsasl2-2 (= 2.1.28+dfsg1-10), libsasl2-modules-db (= 2.1.28+dfsg1-10), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.9-4+b1), libsensors-config (= 1:3.6.2-2), libsensors5 (= 1:3.6.2-2+b1), libsframe2 (= 2.45.50.20251209-1), libsharpyuv0 (= 1.5.0-0.1), libsmartcols1 (= 2.41.3-3), libsqlite3-0 (= 3.46.1-8), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.5.4-1+b1), libssl3t64 (= 3.5.4-1+b1), libstdc++-15-dev (= 15.2.0-12), libstdc++6 (= 15.2.0-12), libsub-quote-perl (= 2.006009-1), libsystemd-shared (= 259-1), libsystemd0 (= 259-1), libsz2 (= 1.1.4-2+b1), libtasn1-6 (= 4.20.0-2+b1), libtasn1-6-dev (= 4.20.0-2+b1), libthai-data (= 0.1.30-1), libthai0 (= 0.1.30-1), libtiff6 (= 4.7.1-1), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.6+20251231-1), libtool (= 2.5.4-9), libtry-tiny-perl (= 0.32-1), libtsan2 (= 15.2.0-12), libubsan1 (= 15.2.0-12), libuchardet0 (= 0.0.8-2), libudev1 (= 259-1), libunbound8 (= 1.24.2-1), libunistring5 (= 1.3-2+b1), liburi-perl (= 5.34-2), libuuid1 (= 2.41.3-3), libuv1t64 (= 1.51.0-2), libvulkan1 (= 1.4.335.0-1), libwayland-client0 (= 1.24.0-2+b1), libwayland-cursor0 (= 1.24.0-2+b1), libwayland-egl1 (= 1.24.0-2+b1), libwebp7 (= 1.5.0-0.1), libwww-perl (= 6.81-1), libwww-robotrules-perl (= 6.02-1), libx11-6 (= 2:1.8.12-1+b1), libx11-data (= 2:1.8.12-1), libx11-xcb1 (= 2:1.8.12-1+b1), libxau6 (= 1:1.0.11-1), libxcb-dri3-0 (= 1.17.0-2+b2), libxcb-glx0 (= 1.17.0-2+b2), libxcb-present0 (= 1.17.0-2+b2), libxcb-randr0 (= 1.17.0-2+b2), libxcb-render0 (= 1.17.0-2+b2), libxcb-shm0 (= 1.17.0-2+b2), libxcb-sync1 (= 1.17.0-2+b2), libxcb-xfixes0 (= 1.17.0-2+b2), libxcb1 (= 1.17.0-2+b2), libxcomposite1 (= 1:0.4.6-1+b1), libxcursor1 (= 1:1.2.3-1+b1), libxdamage1 (= 1:1.1.6-1+b3), libxdmcp6 (= 1:1.1.5-2), libxext6 (= 2:1.3.4-1+b4), libxfixes3 (= 1:6.0.0-2+b5), libxi6 (= 2:1.8.2-2), libxinerama1 (= 2:1.1.4-3+b5), libxkbcommon0 (= 1.12.3-1), libxml2-16 (= 2.15.1+dfsg-2+b1), libxml2-dev (= 2.15.1+dfsg-2+b1), libxrandr2 (= 2:1.5.4-1+b4), libxrender1 (= 1:0.9.12-1+b1), libxshmfence1 (= 1.3.3-1), libxtst6 (= 2:1.2.5-1+b1), libxxf86vm1 (= 1:1.1.4-2), libxxhash0 (= 0.8.3-2), libz3-4 (= 4.13.3-1), libzstd-dev (= 1.5.7+dfsg-3+b1), libzstd1 (= 1.5.7+dfsg-3+b1), linux-libc-dev (= 6.18.3-1), m4 (= 1.4.20-2), make (= 4.4.1-3), man-db (= 2.13.1-1), maven-repo-helper (= 1.12), mawk (= 1.3.4.20250131-2), media-types (= 14.0.0), mesa-libgallium (= 25.3.3-1), mount (= 2.41.3-3), ncbi-vdb-data (= 3.2.1+dfsg-2), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1), netbase (= 6.5), nettle-dev (= 3.10.2-1), openjdk-21-jdk (= 21.0.10~6ea-1), openjdk-21-jdk-headless (= 21.0.10~6ea-1), openjdk-21-jre (= 21.0.10~6ea-1), openjdk-21-jre-headless (= 21.0.10~6ea-1), openssl (= 3.5.4-1), openssl-provider-legacy (= 3.5.4-1), patch (= 2.8-2), patchutils (= 0.4.3-1), perl (= 5.40.1-7), perl-base (= 5.40.1-7), perl-modules-5.40 (= 5.40.1-7), perl-openssl-defaults (= 7+b2), pinentry-curses (= 1.3.2-3), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.22), procps (= 2:4.0.4-9+b1), python3 (= 3.13.9-3), python3-all (= 3.13.9-3), python3-autocommand (= 2.2.2-4), python3-inflect (= 7.5.0-1), python3-jaraco.context (= 6.0.1-1), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-minimal (= 3.13.9-3), python3-more-itertools (= 10.8.0-1), python3-pkg-resources (= 78.1.1-0.1), python3-setuptools (= 78.1.1-0.1), python3-typeguard (= 4.4.4-1), python3-typing-extensions (= 4.15.0-2), python3-zipp (= 3.23.0-1), python3.13 (= 3.13.11-1+b1), python3.13-minimal (= 3.13.11-1+b1), python3.14 (= 3.14.2-1+b1), python3.14-minimal (= 3.14.2-1+b1), readline-common (= 8.3-3), rpcsvc-proto (= 1.4.3-1+b1), sed (= 4.9-2+b1), sensible-utils (= 0.0.26), shared-mime-info (= 2.4-5+b3), sqv (= 1.3.0-5), systemd (= 259-1), systemd-sysv (= 259-1), sysvinit-utils (= 3.15-6), tar (= 1.35+dfsg-3.1), tzdata (= 2025c-3), util-linux (= 2.41.3-3), wdiff (= 1.2.2-9), x11-common (= 1:7.7+26), xkb-data (= 2.46-2), xz-utils (= 5.8.2-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b2), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b2) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1768610988" +------------------------------------------------------------------------------+ | Package contents Sun, 18 Jan 2026 06:02:47 +0000 | +------------------------------------------------------------------------------+ libncbi-ngs-dev_3.2.1+dfsg-5+b1_arm64.deb ----------------------------------------- new Debian package, version 2.0. size 171100 bytes: control archive=1104 bytes. 1138 bytes, 25 lines control 399 bytes, 5 lines md5sums Package: libncbi-ngs-dev Source: sra-sdk (3.2.1+dfsg-5) Version: 3.2.1+dfsg-5+b1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 1462 Depends: libncbi-ngs3 (= 3.2.1+dfsg-5+b1), libngs-c++-dev (= 3.2.1+dfsg-5+b1) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/ncbi/sra-tools/ Description: Next Generation Sequencing language Bindings (C++ development) NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end "engines". The engine for accessing SRA data is contained within the sister repository ncbi-vdb. . The API is currently expressed in C++, Java and Python languages. The design makes it possible to maintain a high degree of similarity between the code in one language and code in another - especially between C++ and Java. . This is the full development package. drwxr-xr-x root/root 0 2026-01-17 00:49 ./ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/lib/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/lib/aarch64-linux-gnu/ -rw-r--r-- root/root 1453150 2026-01-17 00:49 ./usr/lib/aarch64-linux-gnu/libncbi-ngs.a lrwxrwxrwx root/root 0 2026-01-17 00:49 ./usr/lib/aarch64-linux-gnu/libncbi-ngs.so -> libncbi-ngs.so.3 drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/doc/libncbi-ngs-dev/ -rw-r--r-- root/root 226 2026-01-17 00:49 ./usr/share/doc/libncbi-ngs-dev/changelog.Debian.arm64.gz -rw-r--r-- root/root 7929 2026-01-17 00:49 ./usr/share/doc/libncbi-ngs-dev/changelog.Debian.gz -rw-r--r-- root/root 14625 2025-03-18 22:08 ./usr/share/doc/libncbi-ngs-dev/changelog.gz -rw-r--r-- root/root 8343 2025-08-17 03:39 ./usr/share/doc/libncbi-ngs-dev/copyright libncbi-ngs3-dbgsym_3.2.1+dfsg-5+b1_arm64.deb --------------------------------------------- new Debian package, version 2.0. size 695344 bytes: control archive=572 bytes. 434 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libncbi-ngs3-dbgsym Source: sra-sdk (3.2.1+dfsg-5) Version: 3.2.1+dfsg-5+b1 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 1368 Depends: libncbi-ngs3 (= 3.2.1+dfsg-5+b1) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libncbi-ngs3 Build-Ids: 8ad5a107e6638fe2b99f70a8e643a8e2134218f2 drwxr-xr-x root/root 0 2026-01-17 00:49 ./ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/lib/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/lib/debug/.build-id/8a/ -rw-r--r-- root/root 1389952 2026-01-17 00:49 ./usr/lib/debug/.build-id/8a/d5a107e6638fe2b99f70a8e643a8e2134218f2.debug drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-01-17 00:49 ./usr/share/doc/libncbi-ngs3-dbgsym -> libncbi-ngs3 libncbi-ngs3_3.2.1+dfsg-5+b1_arm64.deb -------------------------------------- new Debian package, version 2.0. size 143156 bytes: control archive=1204 bytes. 1104 bytes, 23 lines control 394 bytes, 5 lines md5sums 43 bytes, 1 lines shlibs 66 bytes, 2 lines triggers Package: libncbi-ngs3 Source: sra-sdk (3.2.1+dfsg-5) Version: 3.2.1+dfsg-5+b1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 643 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libncbi-vdb3 (>= 3.2.1+dfsg), libstdc++6 (>= 13.1) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/ncbi/sra-tools/ Description: Next Generation Sequencing language Bindings (full runtime) NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end "engines". The engine for accessing SRA data is contained within the sister repository ncbi-vdb. . The API is currently expressed in C++, Java and Python languages. The design makes it possible to maintain a high degree of similarity between the code in one language and code in another - especially between C++ and Java. drwxr-xr-x root/root 0 2026-01-17 00:49 ./ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/lib/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2026-01-17 00:49 ./usr/lib/aarch64-linux-gnu/libncbi-ngs.so.3 -> libncbi-ngs.so.3.2.1 -rw-r--r-- root/root 612472 2026-01-17 00:49 ./usr/lib/aarch64-linux-gnu/libncbi-ngs.so.3.2.1 drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/doc/libncbi-ngs3/ -rw-r--r-- root/root 226 2026-01-17 00:49 ./usr/share/doc/libncbi-ngs3/changelog.Debian.arm64.gz -rw-r--r-- root/root 7929 2026-01-17 00:49 ./usr/share/doc/libncbi-ngs3/changelog.Debian.gz -rw-r--r-- root/root 14625 2025-03-18 22:08 ./usr/share/doc/libncbi-ngs3/changelog.gz -rw-r--r-- root/root 8343 2025-08-17 03:39 ./usr/share/doc/libncbi-ngs3/copyright libngs-c++-dev_3.2.1+dfsg-5+b1_arm64.deb ---------------------------------------- new Debian package, version 2.0. size 190184 bytes: control archive=3704 bytes. 1219 bytes, 27 lines control 7940 bytes, 110 lines md5sums Package: libngs-c++-dev Source: sra-sdk (3.2.1+dfsg-5) Version: 3.2.1+dfsg-5+b1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 1520 Depends: libngs-c++3 (= 3.2.1+dfsg-5+b1) Breaks: libncbi-vdb-dev (<< 3), libngs-sdk-dev (<< 3) Replaces: libncbi-vdb-dev (<< 3), libngs-sdk-dev (<< 3) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/ncbi/sra-tools/ Description: Next Generation Sequencing language Bindings (C++ development) NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end "engines". The engine for accessing SRA data is contained within the sister repository ncbi-vdb. . The API is currently expressed in C++, Java and Python languages. The design makes it possible to maintain a high degree of similarity between the code in one language and code in another - especially between C++ and Java. . This is the development package for C++ usage. drwxr-xr-x root/root 0 2026-01-17 00:49 ./ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/include/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/include/ncbi-vdb/ -rw-r--r-- root/root 3211 2025-03-18 22:08 ./usr/include/ncbi-vdb/NGS.hpp drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/include/ngs/ -rw-r--r-- root/root 9154 2025-03-18 22:08 ./usr/include/ngs/Alignment.hpp -rw-r--r-- root/root 2746 2025-03-18 22:08 ./usr/include/ngs/AlignmentIterator.hpp -rw-r--r-- root/root 1398 2025-03-18 22:08 ./usr/include/ngs/ErrorMsg.hpp -rw-r--r-- root/root 3945 2025-03-18 22:08 ./usr/include/ngs/Fragment.hpp -rw-r--r-- root/root 2645 2025-03-18 22:08 ./usr/include/ngs/FragmentIterator.hpp -rw-r--r-- root/root 2149 2025-03-18 22:08 ./usr/include/ngs/Package.hpp -rw-r--r-- root/root 3181 2025-03-18 22:08 ./usr/include/ngs/Pileup.hpp -rw-r--r-- root/root 8631 2025-03-18 22:08 ./usr/include/ngs/PileupEvent.hpp -rw-r--r-- root/root 3028 2025-03-18 22:08 ./usr/include/ngs/PileupEventIterator.hpp -rw-r--r-- root/root 2697 2025-03-18 22:08 ./usr/include/ngs/PileupIterator.hpp -rw-r--r-- root/root 4363 2025-03-18 22:08 ./usr/include/ngs/Read.hpp -rw-r--r-- root/root 7394 2025-03-18 22:08 ./usr/include/ngs/ReadCollection.hpp -rw-r--r-- root/root 2742 2025-03-18 22:08 ./usr/include/ngs/ReadGroup.hpp -rw-r--r-- root/root 2751 2025-03-18 22:08 ./usr/include/ngs/ReadGroupIterator.hpp -rw-r--r-- root/root 2606 2025-03-18 22:08 ./usr/include/ngs/ReadIterator.hpp -rw-r--r-- root/root 8877 2025-03-18 22:08 ./usr/include/ngs/Reference.hpp -rw-r--r-- root/root 2735 2025-03-18 22:08 ./usr/include/ngs/ReferenceIterator.hpp -rw-r--r-- root/root 3896 2025-03-18 22:08 ./usr/include/ngs/ReferenceSequence.hpp -rw-r--r-- root/root 3743 2025-03-18 22:08 ./usr/include/ngs/Statistics.hpp -rw-r--r-- root/root 3624 2025-03-18 22:08 ./usr/include/ngs/StringRef.hpp drwxr-xr-x root/root 0 2026-01-17 00:49 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libngs-c++3_3.2.1+dfsg-5+b1_arm64.deb ------------------------------------- new Debian package, version 2.0. size 124448 bytes: control archive=1200 bytes. 1072 bytes, 23 lines control 389 bytes, 5 lines md5sums 41 bytes, 1 lines shlibs 66 bytes, 2 lines triggers Package: libngs-c++3 Source: sra-sdk (3.2.1+dfsg-5) Version: 3.2.1+dfsg-5+b1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 579 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/ncbi/sra-tools/ Description: Next Generation Sequencing language Bindings (C++ runtime) NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end "engines". The engine for accessing SRA data is contained within the sister repository ncbi-vdb. . The API is currently expressed in C++, Java and Python languages. 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The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end "engines". The engine for accessing SRA data is contained within the sister repository ncbi-vdb. . The API is currently expressed in C++, Java and Python languages. The design makes it possible to maintain a high degree of similarity between the code in one language and code in another - especially between C++ and Java. . Java bindings. drwxr-xr-x root/root 0 2026-01-17 00:49 ./ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/doc/libngs-java/ -rw-r--r-- root/root 226 2026-01-17 00:49 ./usr/share/doc/libngs-java/changelog.Debian.arm64.gz -rw-r--r-- root/root 7929 2026-01-17 00:49 ./usr/share/doc/libngs-java/changelog.Debian.gz -rw-r--r-- root/root 14625 2025-03-18 22:08 ./usr/share/doc/libngs-java/changelog.gz -rw-r--r-- root/root 8343 2025-08-17 03:39 ./usr/share/doc/libngs-java/copyright drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/doc/libngs-java/examples/ -rw-r--r-- root/root 3233 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/AlignSliceTest.java -rw-r--r-- root/root 3342 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/AlignTest.java -rw-r--r-- root/root 3823 2026-01-17 00:49 ./usr/share/doc/libngs-java/examples/CMakeLists.txt -rw-r--r-- root/root 4046 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/DumpReferenceFASTA.java -rw-r--r-- root/root 3181 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/FragTest.java -rw-r--r-- root/root 1326 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/Makefile -rw-r--r-- root/root 3209 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/Makefile.install -rw-r--r-- root/root 5183 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/PileupTest.java -rw-r--r-- root/root 3677 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/README.install -rw-r--r-- root/root 2739 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/ReadGroupTest.java -rw-r--r-- root/root 2681 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/RefTest.java -rw-r--r-- root/root 4295 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/SparkKMer.java drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/doc/libngs-java/examples/actual/ -rw-r--r-- root/root 43407 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/expected.txt drwxr-xr-x root/root 0 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/expected/ -rw-r--r-- root/root 740 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/expected/AlignSliceTest -rw-r--r-- root/root 460 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/expected/AlignTest -rw-r--r-- root/root 37633 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/expected/DumpReferenceFASTA -rw-r--r-- root/root 504 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/expected/FragTest -rw-r--r-- root/root 729 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/expected/PileupTest -rw-r--r-- root/root 391 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/expected/ReadGroupTest -rw-r--r-- root/root 2950 2025-03-18 22:08 ./usr/share/doc/libngs-java/examples/expected/RefTest drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/java/ -rw-r--r-- root/root 75652 2026-01-17 00:49 ./usr/share/java/ngs-java-3.2.1.jar lrwxrwxrwx root/root 0 2026-01-17 00:49 ./usr/share/java/ngs-java.jar -> ngs-java-3.2.1.jar drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/maven-repo/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/maven-repo/gov/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/maven-repo/gov/nih/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/maven-repo/gov/nih/nlm/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/maven-repo/gov/nih/nlm/ncbi/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/maven-repo/gov/nih/nlm/ncbi/ngs-java/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/maven-repo/gov/nih/nlm/ncbi/ngs-java/1.2.4/ lrwxrwxrwx root/root 0 2026-01-17 00:49 ./usr/share/maven-repo/gov/nih/nlm/ncbi/ngs-java/1.2.4/ngs-java-1.2.4.jar -> ../../../../../../../java/ngs-java.jar -rw-r--r-- root/root 683 2026-01-17 00:49 ./usr/share/maven-repo/gov/nih/nlm/ncbi/ngs-java/1.2.4/ngs-java-1.2.4.pom drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/maven-repo/gov/nih/nlm/ncbi/ngs-java/debian/ lrwxrwxrwx root/root 0 2026-01-17 00:49 ./usr/share/maven-repo/gov/nih/nlm/ncbi/ngs-java/debian/ngs-java-debian.jar -> ../../../../../../../java/ngs-java.jar -rw-r--r-- root/root 684 2026-01-17 00:49 ./usr/share/maven-repo/gov/nih/nlm/ncbi/ngs-java/debian/ngs-java-debian.pom libngs-jni_3.2.1+dfsg-5+b1_arm64.deb ------------------------------------ new Debian package, version 2.0. size 28088 bytes: control archive=1032 bytes. 1079 bytes, 25 lines control 305 bytes, 4 lines md5sums Package: libngs-jni Source: sra-sdk (3.2.1+dfsg-5) Version: 3.2.1+dfsg-5+b1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 43 Depends: libncbi-ngs3 (= 3.2.1+dfsg-5+b1) Section: java Priority: optional Multi-Arch: same Homepage: https://github.com/ncbi/sra-tools/ Description: Next Generation Sequencing language Bindings (Java native binding) NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end "engines". The engine for accessing SRA data is contained within the sister repository ncbi-vdb. . The API is currently expressed in C++, Java and Python languages. The design makes it possible to maintain a high degree of similarity between the code in one language and code in another - especially between C++ and Java. . Java native bindings. drwxr-xr-x root/root 0 2026-01-17 00:49 ./ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/lib/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/lib/aarch64-linux-gnu/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/lib/aarch64-linux-gnu/jni/ lrwxrwxrwx root/root 0 2026-01-17 00:49 ./usr/lib/aarch64-linux-gnu/jni/libncbi-ngs.so -> ../libncbi-ngs.so.3.2.1 drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/doc/libngs-jni/ -rw-r--r-- root/root 226 2026-01-17 00:49 ./usr/share/doc/libngs-jni/changelog.Debian.arm64.gz -rw-r--r-- root/root 7929 2026-01-17 00:49 ./usr/share/doc/libngs-jni/changelog.Debian.gz -rw-r--r-- root/root 14625 2025-03-18 22:08 ./usr/share/doc/libngs-jni/changelog.gz -rw-r--r-- root/root 8343 2025-08-17 03:39 ./usr/share/doc/libngs-jni/copyright sra-toolkit-dbgsym_3.2.1+dfsg-5+b1_arm64.deb 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2.0. size 6980216 bytes: control archive=3624 bytes. 65 bytes, 3 lines conffiles 1958 bytes, 53 lines control 5112 bytes, 89 lines md5sums Package: sra-toolkit Source: sra-sdk (3.2.1+dfsg-5) Version: 3.2.1+dfsg-5+b1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 22148 Depends: libabsl20240722 (>= 20240722.0-1), libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 4.5), libhdf5-310 (>= 1.14.3), libmagic1t64 (>= 5.12), libncbi-vdb3 (>= 3.2.1+dfsg), libncbi-wvdb3 (>= 3.2.1+dfsg), libre2-11-absl20240722, libstdc++6 (>= 14), libxml2-16 (>= 2.14.1), zlib1g (>= 1:1.2.2) Recommends: med-config Section: science Priority: optional Homepage: https://github.com/ncbi/sra-tools/ Description: utilities for the NCBI Sequence Read Archive Tools for reading the SRA archive, generally by converting individual runs into some commonly used format such as fastq. . The textual dumpers "sra-dump" and "vdb-dump" are provided in this release as an aid in visual inspection. It is likely that their actual output formatting will be changed in the near future to a stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON THE OUTPUT FORMAT SEEN IN THIS RELEASE. . Other tools distributed in this package are: abi-dump, abi-load align-info bam-load cache-mgr cg-load copycat fasterq-dump fastq-dump, fastq-load helicos-load illumina-dump, illumina-load kar kdbmeta latf-load pacbio-load prefetch rcexplain remote-fuser sff-dump, sff-load sra-pileup, sra-sort, sra-stat, srapath srf-load test-sra vdb-config, vdb-copy, vdb-decrypt, vdb-encrypt, vdb-get, vdb-lock, vdb-passwd, vdb-unlock, vdb-validate . The "help" information will be improved in near future releases, and the tool options will become standardized across the set. More documentation will also be provided documentation on the NCBI web site. . Tool options may change in the next release. Version 1 tool options will remain supported wherever possible in order to preserve operation of any existing scripts. drwxr-xr-x root/root 0 2026-01-17 00:49 ./ drwxr-xr-x root/root 0 2026-01-17 00:49 ./etc/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./etc/ncbi/ -rw-r--r-- root/root 4345 2026-01-17 00:49 ./etc/ncbi/certs.kfg -rw-r--r-- root/root 2445 2026-01-17 00:49 ./etc/ncbi/default.kfg -rw-r--r-- root/root 4597 2026-01-17 00:49 ./etc/ncbi/vdb-copy.kfg drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/bin/ -rwxr-xr-x root/root 134680 2026-01-17 00:49 ./usr/bin/abi-dump -rwxr-xr-x root/root 267256 2026-01-17 00:49 ./usr/bin/abi-load -rwxr-xr-x root/root 134800 2026-01-17 00:49 ./usr/bin/align-cache -rwxr-xr-x root/root 69064 2026-01-17 00:49 ./usr/bin/align-info -rwxr-xr-x root/root 858504 2026-01-17 00:49 ./usr/bin/bam-load -rwxr-xr-x root/root 69368 2026-01-17 00:49 ./usr/bin/cache-mgr -rwxr-xr-x root/root 134880 2026-01-17 00:49 ./usr/bin/ccextract -rwxr-xr-x root/root 201440 2026-01-17 00:49 ./usr/bin/cg-load -rwxr-xr-x root/root 134576 2026-01-17 00:49 ./usr/bin/check-corrupt -rwxr-xr-x root/root 68728 2026-01-17 00:49 ./usr/bin/check-redact -rwxr-xr-x root/root 68664 2026-01-17 00:49 ./usr/bin/compute-coverage -rwxr-xr-x root/root 482136 2026-01-17 00:49 ./usr/bin/compute-coverage-ngs -rwxr-xr-x root/root 200824 2026-01-17 00:49 ./usr/bin/copycat -rwxr-xr-x root/root 68792 2026-01-17 00:49 ./usr/bin/crc32sum -rwxr-xr-x root/root 67824 2026-01-17 00:49 ./usr/bin/dump-blob-boundaries -rwxr-xr-x root/root 482136 2026-01-17 00:49 ./usr/bin/dump-ref-fasta -rwxr-xr-x root/root 1208752 2026-01-17 00:49 ./usr/bin/fastconv lrwxrwxrwx root/root 0 2026-01-17 00:49 ./usr/bin/fasterq-dump -> ../lib/sra-toolkit/sratools lrwxrwxrwx root/root 0 2026-01-17 00:49 ./usr/bin/fastq-dump -> ../lib/sra-toolkit/sratools -rwxr-xr-x root/root 267176 2026-01-17 00:49 ./usr/bin/fastq-load -rwxr-xr-x root/root 134560 2026-01-17 00:49 ./usr/bin/general-loader -rwxr-xr-x root/root 267176 2026-01-17 00:49 ./usr/bin/helicos-load -rwxr-xr-x root/root 134680 2026-01-17 00:49 ./usr/bin/illumina-dump -rwxr-xr-x root/root 267176 2026-01-17 00:49 ./usr/bin/illumina-load -rwxr-xr-x root/root 134904 2026-01-17 00:49 ./usr/bin/kar -rwxr-xr-x root/root 135192 2026-01-17 00:49 ./usr/bin/kar+ -rwxr-xr-x root/root 69048 2026-01-17 00:49 ./usr/bin/kar+meta -rwxr-xr-x root/root 68664 2026-01-17 00:49 ./usr/bin/kdb-index -rwxr-xr-x root/root 68776 2026-01-17 00:49 ./usr/bin/kdbmeta -rwxr-xr-x root/root 201408 2026-01-17 00:49 ./usr/bin/latf-load -rwxr-xr-x root/root 134392 2026-01-17 00:49 ./usr/bin/make-read-filter -rwxr-xr-x root/root 68968 2026-01-17 00:49 ./usr/bin/md5cp -rwxr-xr-x root/root 68664 2026-01-17 00:49 ./usr/bin/meta-cmp -rwxr-xr-x root/root 68664 2026-01-17 00:49 ./usr/bin/meta-copy -rwxr-xr-x root/root 135104 2026-01-17 00:49 ./usr/bin/meta-repair -rwxr-xr-x root/root 482296 2026-01-17 00:49 ./usr/bin/ngs-pileup -rwxr-xr-x root/root 68664 2026-01-17 00:49 ./usr/bin/pacbio-correct -rwxr-xr-x root/root 201600 2026-01-17 00:49 ./usr/bin/pacbio-load -rwxr-xr-x root/root 267176 2026-01-17 00:49 ./usr/bin/pacbio-loadxml -rwxr-xr-x root/root 482152 2026-01-17 00:49 ./usr/bin/pileup-stats lrwxrwxrwx root/root 0 2026-01-17 00:49 ./usr/bin/prefetch -> ../lib/sra-toolkit/sratools -rwxr-xr-x root/root 68664 2026-01-17 00:49 ./usr/bin/rcexplain -rwxr-xr-x root/root 68728 2026-01-17 00:49 ./usr/bin/read-filter-redact -rwxr-xr-x root/root 548800 2026-01-17 00:49 ./usr/bin/ref-variation -rwxr-xr-x root/root 68808 2026-01-17 00:49 ./usr/bin/rowwritetest lrwxrwxrwx root/root 0 2026-01-17 00:49 ./usr/bin/sam-dump -> ../lib/sra-toolkit/sratools -rwxr-xr-x root/root 67952 2026-01-17 00:49 ./usr/bin/samview -rwxr-xr-x root/root 68664 2026-01-17 00:49 ./usr/bin/samview-util -rwxr-xr-x root/root 68920 2026-01-17 00:49 ./usr/bin/schema-replace -rwxr-xr-x root/root 134680 2026-01-17 00:49 ./usr/bin/sff-dump -rwxr-xr-x root/root 267176 2026-01-17 00:49 ./usr/bin/sff-load -rwxr-xr-x root/root 2231144 2026-01-17 00:49 ./usr/bin/sharq -rwxr-xr-x root/root 68664 2026-01-17 00:49 ./usr/bin/sortreadtest -rwxr-xr-x root/root 266088 2026-01-17 00:49 ./usr/bin/sra-info lrwxrwxrwx root/root 0 2026-01-17 00:49 ./usr/bin/sra-pileup -> ../lib/sra-toolkit/sratools -rwxr-xr-x root/root 614128 2026-01-17 00:49 ./usr/bin/sra-search -rwxr-xr-x root/root 274056 2026-01-17 00:49 ./usr/bin/sra-sort -rwxr-xr-x root/root 274056 2026-01-17 00:49 ./usr/bin/sra-sort-cg -rwxr-xr-x root/root 135328 2026-01-17 00:49 ./usr/bin/sra-stat lrwxrwxrwx root/root 0 2026-01-17 00:49 ./usr/bin/srapath -> ../lib/sra-toolkit/sratools -rwxr-xr-x root/root 267304 2026-01-17 00:49 ./usr/bin/srf-load -rwxr-xr-x root/root 69128 2026-01-17 00:49 ./usr/bin/test-download -rwxr-xr-x root/root 68664 2026-01-17 00:49 ./usr/bin/test-read-write-cursor -rwxr-xr-x root/root 134904 2026-01-17 00:49 ./usr/bin/test-sra -rwxr-xr-x root/root 68728 2026-01-17 00:49 ./usr/bin/testld -rwxr-xr-x root/root 69016 2026-01-17 00:49 ./usr/bin/txt2kdb -rwxr-xr-x root/root 482288 2026-01-17 00:49 ./usr/bin/var-expand -rwxr-xr-x root/root 332776 2026-01-17 00:49 ./usr/bin/vdb-config -rwxr-xr-x root/root 135432 2026-01-17 00:49 ./usr/bin/vdb-copy -rwxr-xr-x root/root 68920 2026-01-17 00:49 ./usr/bin/vdb-decrypt -rwxr-xr-x root/root 134712 2026-01-17 00:49 ./usr/bin/vdb-diff lrwxrwxrwx root/root 0 2026-01-17 00:49 ./usr/bin/vdb-dump -> ../lib/sra-toolkit/sratools -rwxr-xr-x root/root 68856 2026-01-17 00:49 ./usr/bin/vdb-encrypt -rwxr-xr-x root/root 68664 2026-01-17 00:49 ./usr/bin/vdb-lock -rwxr-xr-x root/root 1278712 2026-01-17 00:49 ./usr/bin/vdb-sql -rwxr-xr-x root/root 68664 2026-01-17 00:49 ./usr/bin/vdb-unlock -rwxr-xr-x root/root 135200 2026-01-17 00:49 ./usr/bin/vdb-validate drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/lib/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/lib/sra-toolkit/ -rwxr-xr-x root/root 267944 2026-01-17 00:49 ./usr/lib/sra-toolkit/fasterq-dump-orig -rwxr-xr-x root/root 134680 2026-01-17 00:49 ./usr/lib/sra-toolkit/fastq-dump-orig -rwxr-xr-x root/root 201688 2026-01-17 00:49 ./usr/lib/sra-toolkit/prefetch-orig -rwxr-xr-x root/root 271128 2026-01-17 00:49 ./usr/lib/sra-toolkit/sam-dump-orig -rwxr-xr-x root/root 136024 2026-01-17 00:49 ./usr/lib/sra-toolkit/sra-pileup-orig -rwxr-xr-x root/root 135096 2026-01-17 00:49 ./usr/lib/sra-toolkit/srapath-orig -rwxr-xr-x root/root 330280 2026-01-17 00:49 ./usr/lib/sra-toolkit/sratools -rwxr-xr-x root/root 269096 2026-01-17 00:49 ./usr/lib/sra-toolkit/vdb-dump-orig drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-01-17 00:49 ./usr/share/doc/sra-toolkit/ -rw-r--r-- root/root 1674 2025-03-18 22:08 ./usr/share/doc/sra-toolkit/README-blastn -rw-r--r-- root/root 2008 2025-03-18 22:08 ./usr/share/doc/sra-toolkit/README-vdb-config.gz -rw-r--r-- root/root 1085 2025-08-17 03:39 ./usr/share/doc/sra-toolkit/README.Debian -rw-r--r-- root/root 4386 2025-03-18 22:08 ./usr/share/doc/sra-toolkit/README.md.gz -rw-r--r-- root/root 178 2025-08-17 03:39 ./usr/share/doc/sra-toolkit/README.test -rw-r--r-- root/root 226 2026-01-17 00:49 ./usr/share/doc/sra-toolkit/changelog.Debian.arm64.gz -rw-r--r-- root/root 7929 2026-01-17 00:49 ./usr/share/doc/sra-toolkit/changelog.Debian.gz -rw-r--r-- root/root 14625 2025-03-18 22:08 ./usr/share/doc/sra-toolkit/changelog.gz -rw-r--r-- root/root 8343 2025-08-17 03:39 ./usr/share/doc/sra-toolkit/copyright -rw-r--r-- root/root 3550 2025-08-17 03:39 ./usr/share/doc/sra-toolkit/run-unit-test -rw-r--r-- root/root 3753588 2026-01-17 00:49 ./usr/share/doc/sra-toolkit/test-data.tar.gz +------------------------------------------------------------------------------+ | Post Build Sun, 18 Jan 2026 06:02:54 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sun, 18 Jan 2026 06:02:54 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sun, 18 Jan 2026 06:02:58 +0000 | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 1609200 Build-Time: 398 Distribution: unstable Host Architecture: arm64 Install-Time: 6 Job: /srv/rebuilderd/tmp/rebuilderdxra5ZU/inputs/sra-sdk_3.2.1+dfsg-5.dsc Machine Architecture: arm64 Package: sra-sdk Package-Time: 421 Source-Version: 3.2.1+dfsg-5 Space: 1609200 Status: successful Version: 3.2.1+dfsg-5+b1 -------------------------------------------------------------------------------- Finished at 2026-01-18T06:02:43Z Build needed 00:07:01, 1609200k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdxra5ZU/out checking libncbi-ngs-dev_3.2.1+dfsg-5+b1_arm64.deb: size... sha256... sha1... md5... all OK checking libncbi-ngs3-dbgsym_3.2.1+dfsg-5+b1_arm64.deb: size... sha256... sha1... md5... all OK checking libncbi-ngs3_3.2.1+dfsg-5+b1_arm64.deb: size... sha1... sha256... md5... all OK checking libngs-c++-dev_3.2.1+dfsg-5+b1_arm64.deb: size... md5... sha256... sha1... all OK checking libngs-c++3-dbgsym_3.2.1+dfsg-5+b1_arm64.deb: size... md5... sha1... sha256... all OK checking libngs-c++3_3.2.1+dfsg-5+b1_arm64.deb: size... md5... sha256... sha1... all OK checking libngs-java_3.2.1+dfsg-5+b1_arm64.deb: size... md5... sha256... sha1... all OK checking libngs-jni_3.2.1+dfsg-5+b1_arm64.deb: size... md5... sha1... sha256... all OK checking sra-toolkit-dbgsym_3.2.1+dfsg-5+b1_arm64.deb: size... md5... sha256... sha1... all OK checking sra-toolkit_3.2.1+dfsg-5+b1_arm64.deb: size... sha256... sha1... md5... all OK +------------------------------------------------------------------------------+ + set +x | Finished running debrebuild Sun, 18 Jan 2026 06:02:58 +0000 | +------------------------------------------------------------------------------+