=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdMa7NOy/inputs/mrtrix3_3.0.8-1_arm64.buildinfo Source: mrtrix3 Version: 3.0.8-1 rebuilderd-worker node: codethink02-arm64 +------------------------------------------------------------------------------+ | Downloading sources Wed, 11 Mar 2026 05:31:32 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.6 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [137 kB] Get:7 https://deb.debian.org/debian sid InRelease [187 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6552 B] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [137 kB] Get:12 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [162 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [2464 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [159 kB] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [8308 B] Get:18 https://deb.debian.org/debian forky/main Sources [10.7 MB] Get:19 https://deb.debian.org/debian sid/main Sources [11.4 MB] Get:20 https://deb.debian.org/debian sid/non-free-firmware Sources [10.5 kB] Get:21 https://deb.debian.org/debian experimental/non-free-firmware Sources [2572 B] Get:22 https://deb.debian.org/debian experimental/main Sources [428 kB] Fetched 34.3 MB in 3s (11.1 MB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/mrtrix3/mrtrix3_3.0.8-1.dsc' mrtrix3_3.0.8-1.dsc 2266 SHA256:0da5b6e64eefb74949bf6bbd2fddb811684928c71e82631fca57590aef47a41d 'https://deb.debian.org/debian/pool/main/m/mrtrix3/mrtrix3_3.0.8.orig.tar.gz' mrtrix3_3.0.8.orig.tar.gz 4057854 SHA256:7ca0ec513fe32421f453b8bdc5a7355a4563fd0247eea92fd5998ebd81a988aa 'https://deb.debian.org/debian/pool/main/m/mrtrix3/mrtrix3_3.0.8-1.debian.tar.xz' mrtrix3_3.0.8-1.debian.tar.xz 10320 SHA256:68a990486617c74f6e8bace10283308be390db8eb90015b4d9ce31d8e1b146e1 7ca0ec513fe32421f453b8bdc5a7355a4563fd0247eea92fd5998ebd81a988aa mrtrix3_3.0.8.orig.tar.gz 68a990486617c74f6e8bace10283308be390db8eb90015b4d9ce31d8e1b146e1 mrtrix3_3.0.8-1.debian.tar.xz 0da5b6e64eefb74949bf6bbd2fddb811684928c71e82631fca57590aef47a41d mrtrix3_3.0.8-1.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Wed, 11 Mar 2026 05:31:36 +0000 | +------------------------------------------------------------------------------+ + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdMa7NOy/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdMa7NOy/inputs/mrtrix3_3.0.8-1_arm64.buildinfo Rebuilding mrtrix3=3.0.8-1 in /srv/rebuilderd/tmp/rebuilderdMa7NOy/inputs now. /srv/rebuilderd/tmp/rebuilderdMa7NOy/inputs/mrtrix3_3.0.8-1_arm64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/mrtrix3-3.0.8 I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [187 kB] Get:2 http://snapshot.debian.org/archive/debian/20251215T094804Z sid InRelease [186 kB] Get:3 http://snapshot.debian.org/archive/debian/20251218T082620Z sid InRelease [186 kB] Get:4 http://deb.debian.org/debian unstable/main arm64 Packages [10.3 MB] Get:5 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 Packages [10.1 MB] Get:6 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 Packages [10.1 MB] Fetched 31.1 MB in 3s (9643 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20251215T094804Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20251218T082620Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libcolamd3 arm64 1:7.12.1+dfsg-1 [41.5 kB] Fetched 41.5 kB in 0s (0 B/s) dpkg-name: info: moved 'libcolamd3_1%3a7.12.1+dfsg-1_arm64.deb' to '/srv/rebuilderd/tmp/tmplpgxq6lv/libcolamd3_7.12.1+dfsg-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-4 [40.0 kB] Fetched 40.0 kB in 0s (1994 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6q99x8ox/libgl2ps1.4_1.4.2+dfsg1-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libopengl-dev arm64 1.7.0-1+b2 [5376 B] Fetched 5376 B in 0s (537 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpszp3ltey/libopengl-dev_1.7.0-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libcurl4-openssl-dev arm64 8.18.0~rc2-1 [509 kB] Fetched 509 kB in 0s (27.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp85h447ga/libcurl4-openssl-dev_8.18.0~rc2-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 perl arm64 5.40.1-7 [267 kB] Fetched 267 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr82lbgmw/perl_5.40.1-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-xkb1 arm64 1.17.0-2+b1 [129 kB] Fetched 129 kB in 0s (6965 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3kyh7cbx/libxcb-xkb1_1.17.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 xz-utils arm64 5.8.1-2 [657 kB] Fetched 657 kB in 0s (27.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_cnnq7n3/xz-utils_5.8.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libcxsparse4 arm64 1:7.12.1+dfsg-1 [86.2 kB] Fetched 86.2 kB in 0s (0 B/s) dpkg-name: info: moved 'libcxsparse4_1%3a7.12.1+dfsg-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp57_9p6lq/libcxsparse4_7.12.1+dfsg-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 shared-mime-info arm64 2.4-5+b3 [755 kB] Fetched 755 kB in 0s (31.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4qipnune/shared-mime-info_2.4-5+b3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libngtcp2-crypto-ossl-dev arm64 1.16.0-1 [27.6 kB] Fetched 27.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdubbjmom/libngtcp2-crypto-ossl-dev_1.16.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libmd0 arm64 1.1.0-2+b1 [33.7 kB] Fetched 33.7 kB in 0s (1806 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp73lbkiu1/libmd0_1.1.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libqt6core6t64 arm64 6.9.2+dfsg-3 [1687 kB] Fetched 1687 kB in 0s (47.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2_0rcym6/libqt6core6t64_6.9.2+dfsg-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 gcc-15 arm64 15.2.0-11 [519 kB] Fetched 519 kB in 0s (48.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0a4v00tw/gcc-15_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxext-dev arm64 2:1.3.4-1+b3 [105 kB] Fetched 105 kB in 0s (0 B/s) dpkg-name: info: moved 'libxext-dev_2%3a1.3.4-1+b3_arm64.deb' to '/srv/rebuilderd/tmp/tmp66up9yyk/libxext-dev_1.3.4-1+b3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.22.1-2 [127 kB] Fetched 127 kB in 0s (7178 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbsl5au0z/krb5-multidev_1.22.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgmp10 arm64 2:6.3.0+dfsg-5 [535 kB] Fetched 535 kB in 0s (39.1 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5_arm64.deb' to '/srv/rebuilderd/tmp/tmpcgi4e1j7/libgmp10_6.3.0+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Fetched 123 kB in 0s (6044 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgwql_2tc/libngtcp2-16_1.16.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Fetched 49.2 kB in 0s (2808 kB/s) dpkg-name: info: moved 'libxext6_2%3a1.3.4-1+b3_arm64.deb' to '/srv/rebuilderd/tmp/tmpik9ohfjs/libxext6_1.3.4-1+b3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libfltk-gl1.3t64 arm64 1.3.11-3 [62.0 kB] Fetched 62.0 kB in 0s (3513 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcplhtujx/libfltk-gl1.3t64_1.3.11-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libumfpack6 arm64 1:7.12.1+dfsg-1 [235 kB] Fetched 235 kB in 0s (12.5 MB/s) dpkg-name: info: moved 'libumfpack6_1%3a7.12.1+dfsg-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpojmbcz1q/libumfpack6_7.12.1+dfsg-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.22.1-2 [40.7 kB] Fetched 40.7 kB in 0s (2431 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkqbsbeoh/libkadm5clnt-mit12_1.22.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libx11-xcb1 arm64 2:1.8.12-1 [247 kB] Fetched 247 kB in 0s (5080 kB/s) dpkg-name: info: moved 'libx11-xcb1_2%3a1.8.12-1_arm64.deb' to '/srv/rebuilderd/tmp/tmplksc0g5m/libx11-xcb1_1.8.12-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libglu1-mesa-dev arm64 9.0.2-1.1+b3 [203 kB] Fetched 203 kB in 0s (13.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsrfyec4s/libglu1-mesa-dev_9.0.2-1.1+b3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 gfortran-15 arm64 15.2.0-11 [18.3 kB] Fetched 18.3 kB in 0s (1269 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl6uv9hwi/gfortran-15_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Fetched 57.1 kB in 0s (5159 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo2gc0g4h/libpsl5t64_0.21.2-1.1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgdbm6t64 arm64 1.26-1 [77.5 kB] Fetched 77.5 kB in 0s (4198 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx9cwyepc/libgdbm6t64_1.26-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libpcre2-16-0 arm64 10.46-1 [247 kB] Fetched 247 kB in 0s (13.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp91mg9w2q/libpcre2-16-0_10.46-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libudev1 arm64 259~rc3-1 [147 kB] Fetched 147 kB in 0s (6266 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6kkk0h99/libudev1_259~rc3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0052 [43.3 kB] Fetched 43.3 kB in 0s (2005 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmrum3adz/ucf_3.0052_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 build-essential arm64 12.12 [4624 B] Fetched 4624 B in 0s (276 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxi8ectw6/build-essential_12.12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-randr0 arm64 1.17.0-2+b1 [117 kB] Fetched 117 kB in 0s (7480 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqj7ng4ja/libxcb-randr0_1.17.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libglpk40 arm64 5.0-2 [340 kB] Fetched 340 kB in 0s (21.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaas6e_90/libglpk40_5.0-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (444 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp184nyofy/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Fetched 3012 kB in 0s (138 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3seyj0km/perl-modules-5.40_5.40.1-7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxau-dev arm64 1:1.0.11-1 [23.9 kB] Fetched 23.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libxau-dev_1%3a1.0.11-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp6gy3o5zn/libxau-dev_1.0.11-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 dash arm64 0.5.12-12 [95.6 kB] Fetched 95.6 kB in 0s (6291 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0f9pn869/dash_0.5.12-12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 rpcsvc-proto arm64 1.4.3-1+b1 [60.5 kB] Fetched 60.5 kB in 0s (5641 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyjc07qel/rpcsvc-proto_1.4.3-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libavahi-common3 arm64 0.8-17 [44.9 kB] Fetched 44.9 kB in 0s (3059 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfk3o18no/libavahi-common3_0.8-17_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libcurl4t64 arm64 8.18.0~rc2-1 [372 kB] Fetched 372 kB in 0s (35.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyffv7d6l/libcurl4t64_8.18.0~rc2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libqt5concurrent5t64 arm64 5.15.17+dfsg-5 [45.4 kB] Fetched 45.4 kB in 0s (1670 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0_kd1obo/libqt5concurrent5t64_5.15.17+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libfftw3-double3 arm64 3.3.10-2+b1 [337 kB] Fetched 337 kB in 0s (18.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8jxllu8x/libfftw3-double3_3.3.10-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgraphite2-3 arm64 1.3.14-11 [70.8 kB] Fetched 70.8 kB in 0s (3076 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcrhf7ai2/libgraphite2-3_1.3.14-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Fetched 143 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxlrnau6w/libxcb1_1.17.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4 [1280 B] Fetched 1280 B in 0s (53.6 kB/s) dpkg-name: info: moved 'gfortran-aarch64-linux-gnu_4%3a15.2.0-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpvxtn17d_/gfortran-aarch64-linux-gnu_15.2.0-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Fetched 125 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpga900kgy/libwebpmux3_1.5.0-0.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libsystemd0 arm64 259~rc3-1 [429 kB] Fetched 429 kB in 0s (35.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1p9mjpqe/libsystemd0_259~rc3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libsndfile1 arm64 1.2.2-3 [198 kB] Fetched 198 kB in 0s (7032 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx5vtfxwj/libsndfile1_1.2.2-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libpython3.13-minimal arm64 3.13.11-1+b1 [859 kB] Fetched 859 kB in 0s (31.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_b2ec8ly/libpython3.13-minimal_3.13.11-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 man-db arm64 2.13.1-1 [1453 kB] Fetched 1453 kB in 0s (56.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpquwxl5zf/man-db_2.13.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 diffutils arm64 1:3.12-1 [397 kB] Fetched 397 kB in 0s (17.7 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.12-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpqvn_4kar/diffutils_3.12-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Fetched 318 kB in 0s (23.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo3wbhcq4/fontconfig-config_2.15.0-2.4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libmount1 arm64 2.41.3-1 [199 kB] Fetched 199 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_eta2i01/libmount1_2.41.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Fetched 35.3 kB in 0s (1453 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw3n1msv4/libpkgconf3_1.8.1-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libngtcp2-dev arm64 1.16.0-1 [183 kB] Fetched 183 kB in 0s (13.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg3bril92/libngtcp2-dev_1.16.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libp11-kit0 arm64 0.25.10-1 [420 kB] Fetched 420 kB in 0s (16.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg4jll6se/libp11-kit0_0.25.10-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libattr1 arm64 1:2.5.2-3 [22.7 kB] Fetched 22.7 kB in 0s (1291 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_arm64.deb' to '/srv/rebuilderd/tmp/tmphsucvb4n/libattr1_2.5.2-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libqt6sql6 arm64 6.9.2+dfsg-3 [137 kB] Fetched 137 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqkfyvyqd/libqt6sql6_6.9.2+dfsg-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 comerr-dev arm64 2.1-1.47.2-3+b4 [57.0 kB] Fetched 57.0 kB in 0s (5345 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppyppuwxz/comerr-dev_2.1-1.47.2-3+b4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libtiffxx6 arm64 4.7.1-1 [174 kB] Fetched 174 kB in 0s (8935 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl1ba3ye9/libtiffxx6_4.7.1-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.22.1-2 [56.5 kB] Fetched 56.5 kB in 0s (3037 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi6vb39t2/libgssrpc4t64_1.22.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libglx0 arm64 1.7.0-1+b2 [31.1 kB] Fetched 31.1 kB in 0s (1534 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa3duo6mb/libglx0_1.7.0-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libbrotli1 arm64 1.1.0-2+b9 [295 kB] Fetched 295 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp695qf33l/libbrotli1_1.1.0-2+b9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libglx-dev arm64 1.7.0-1+b2 [15.8 kB] Fetched 15.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7sle9_rg/libglx-dev_1.7.0-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgudev-1.0-0 arm64 238-7 [13.9 kB] Fetched 13.9 kB in 0s (1151 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzs9oa1ci/libgudev-1.0-0_238-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libblkid1 arm64 2.41.3-1 [166 kB] Fetched 166 kB in 0s (8708 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp87hea1l7/libblkid1_2.41.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 grep arm64 3.12-1 [440 kB] Fetched 440 kB in 0s (20.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfnt5hmj8/grep_3.12-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Fetched 42.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk64q76fn/libdeflate0_1.23-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-9 [540 kB] Fetched 540 kB in 0s (19.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpom5ttip0/libtool_2.5.4-9_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libsqlite3-0 arm64 3.46.1-8 [884 kB] Fetched 884 kB in 0s (44.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpir5wio_q/libsqlite3-0_3.46.1-8_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libjxl0.11 arm64 0.11.1-6 [886 kB] Fetched 886 kB in 0s (32.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1rq97vj3/libjxl0.11_0.11.1-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libegl-mesa0 arm64 25.2.8-2+b2 [115 kB] Fetched 115 kB in 0s (4117 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzl5696g3/libegl-mesa0_25.2.8-2+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libinput-bin arm64 1.30.0-1 [28.0 kB] Fetched 28.0 kB in 0s (1175 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9ak3wnub/libinput-bin_1.30.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libvulkan-dev arm64 1.4.328.1-1 [1679 kB] Fetched 1679 kB in 0s (96.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmbwnz8kj/libvulkan-dev_1.4.328.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB] Fetched 36.4 kB in 0s (1509 kB/s) dpkg-name: info: moved 'libsm6_2%3a1.2.6-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp3kt2spvr/libsm6_1.2.6-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Fetched 108 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3c9nd2b2/libidn2-0_2.3.8-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 hicolor-icon-theme all 0.18-2 [11.8 kB] Fetched 11.8 kB in 0s (810 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppjmpsneg/hicolor-icon-theme_0.18-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 hostname arm64 3.25 [10.8 kB] Fetched 10.8 kB in 0s (603 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkm2c4eit/hostname_3.25_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libc-bin arm64 2.42-6 [573 kB] Fetched 573 kB in 0s (25.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1bs3d5w0/libc-bin_2.42-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libacl1 arm64 2.3.2-2+b1 [32.2 kB] Fetched 32.2 kB in 0s (1630 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphw846plp/libacl1_2.3.2-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libasound2-data all 1.2.15-2 [21.1 kB] Fetched 21.1 kB in 0s (1190 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdvnf_z0f/libasound2-data_1.2.15-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.22.1-2 [77.1 kB] Fetched 77.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1it6u30t/libk5crypto3_1.22.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libqt5sql5t64 arm64 5.15.17+dfsg-5 [122 kB] Fetched 122 kB in 0s (5807 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp80qbyo18/libqt5sql5t64_5.15.17+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libavahi-client3 arm64 0.8-17 [48.5 kB] Fetched 48.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6srq6je4/libavahi-client3_0.8-17_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+26 [217 kB] Fetched 217 kB in 0s (19.3 MB/s) dpkg-name: info: moved 'x11-common_1%3a7.7+26_all.deb' to '/srv/rebuilderd/tmp/tmpnnu2ogmg/x11-common_7.7+26_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libmpc3 arm64 1.3.1-2 [50.2 kB] Fetched 50.2 kB in 0s (2429 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu2efgdec/libmpc3_1.3.1-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libselinux1 arm64 3.9-4+b1 [80.8 kB] Fetched 80.8 kB in 0s (4332 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj7bp7rw8/libselinux1_3.9-4+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libsframe2 arm64 2.45.50.20251209-1 [79.7 kB] Fetched 79.7 kB in 0s (6718 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj8g_7xv9/libsframe2_2.45.50.20251209-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Fetched 27.8 kB in 0s (1287 kB/s) dpkg-name: info: moved 'libxdmcp6_1%3a1.1.5-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpray70o8y/libxdmcp6_1.1.5-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.2-1 [242 kB] Fetched 242 kB in 0s (9107 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbj05f94u/gettext-base_0.23.2-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-2 [40.3 kB] Fetched 40.3 kB in 0s (2169 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr_4zysz6/libpipeline1_1.5.8-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 octave-dev arm64 10.3.0-3 [1066 kB] Fetched 1066 kB in 0s (46.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn17paju8/octave-dev_10.3.0-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libevdev2 arm64 1.13.6+dfsg-1 [30.7 kB] Fetched 30.7 kB in 0s (1729 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbx2ik51i/libevdev2_1.13.6+dfsg-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-image0 arm64 0.4.0-2+b2 [21.9 kB] Fetched 21.9 kB in 0s (1059 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaf5w0giv/libxcb-image0_0.4.0-2+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libbz2-1.0 arm64 1.0.8-6 [37.8 kB] Fetched 37.8 kB in 0s (2592 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyfvtrwz0/libbz2-1.0_1.0.8-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libatomic1 arm64 15.2.0-11 [9828 B] Fetched 9828 B in 0s (610 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprfrw118z/libatomic1_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 ncurses-base all 6.5+20251123-1 [277 kB] Fetched 277 kB in 0s (5732 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4z2w_ef3/ncurses-base_6.5+20251123-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Fetched 77.9 kB in 0s (4051 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3kk1d_pc/libpsl-dev_0.21.2-1.1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.22.1-2 [41.8 kB] Fetched 41.8 kB in 0s (2309 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1o47v8nf/libkdb5-10t64_1.22.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libp11-kit-dev arm64 0.25.10-1 [221 kB] Fetched 221 kB in 0s (9032 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp28s_cvfo/libp11-kit-dev_0.25.10-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-4 [68.4 kB] Fetched 68.4 kB in 0s (3614 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3iq70tpi/libhdf5-hl-310_1.14.5+repack-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libqt6xml6 arm64 6.9.2+dfsg-3 [84.0 kB] Fetched 84.0 kB in 0s (8031 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwf1gbdl7/libqt6xml6_6.9.2+dfsg-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libpam-modules-bin arm64 1.7.0-5 [48.3 kB] Fetched 48.3 kB in 0s (2519 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp81hslk3g/libpam-modules-bin_1.7.0-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-1+b2 [85.9 kB] Fetched 85.9 kB in 0s (3865 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b2_arm64.deb' to '/srv/rebuilderd/tmp/tmpudx6e5h8/zlib1g_1.3.dfsg+really1.3.1-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libwebpdecoder3 arm64 1.5.0-0.1 [182 kB] Fetched 182 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyw1r4v0r/libwebpdecoder3_1.5.0-0.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libqt6core5compat6 arm64 6.9.2-3 [127 kB] Fetched 127 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf9v_lk7r/libqt6core5compat6_6.9.2-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 liblapack-dev arm64 3.12.1-7 [3829 kB] Fetched 3829 kB in 0s (94.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkjci62wb/liblapack-dev_3.12.1-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libqt5network5t64 arm64 5.15.17+dfsg-5 [650 kB] Fetched 650 kB in 0s (42.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ywc7s8w/libqt5network5t64_5.15.17+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-xinput0 arm64 1.17.0-2+b1 [130 kB] Fetched 130 kB in 0s (5377 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp68jxnz3t/libxcb-xinput0_1.17.0-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxxf86vm1 arm64 1:1.1.4-2 [19.5 kB] Fetched 19.5 kB in 0s (0 B/s) dpkg-name: info: moved 'libxxf86vm1_1%3a1.1.4-2_arm64.deb' to '/srv/rebuilderd/tmp/tmpvsp2p604/libxxf86vm1_1.1.4-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 findutils arm64 4.10.0-3 [696 kB] Fetched 696 kB in 0s (25.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpck5t2nll/findutils_4.10.0-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libstdc++-15-dev arm64 15.2.0-11 [2348 kB] Fetched 2348 kB in 0s (70.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1x68clhp/libstdc++-15-dev_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 g++-15 arm64 15.2.0-11 [24.9 kB] Fetched 24.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn2ho1yxi/g++-15_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 groff-base arm64 1.23.0-10 [1130 kB] Fetched 1130 kB in 0s (10.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpphx7cmps/groff-base_1.23.0-10_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Fetched 170 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbrn94zm6/libevent-2.1-7t64_2.1.12-stable-10+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libcom-err2 arm64 1.47.2-3+b4 [24.9 kB] Fetched 24.9 kB in 0s (1325 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3tsyq9z6/libcom-err2_1.47.2-3+b4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libicu76 arm64 76.1-4 [9524 kB] Fetched 9524 kB in 0s (112 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk2usuzkw/libicu76_76.1-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libportaudio2 arm64 19.7.0-1 [58.3 kB] Fetched 58.3 kB in 0s (2835 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps_t_s21q/libportaudio2_19.7.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libheif-plugin-libde265 arm64 1.20.2-2+b4 [16.9 kB] Fetched 16.9 kB in 0s (892 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn4axbrar/libheif-plugin-libde265_1.20.2-2+b4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Fetched 9652 B in 0s (944 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzgvs01cn/libtext-charwidth-perl_0.04-11+b4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 coreutils arm64 9.7-3 [2949 kB] Fetched 2949 kB in 0s (77.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi3bk4sg9/coreutils_9.7-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Fetched 15.1 kB in 0s (638 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3fm8927q/libxml-namespacesupport-perl_1.12-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB] Fetched 89.3 kB in 0s (5126 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpntsqhbs8/libedit2_3.1-20250104-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libmtdev1t64 arm64 1.1.7-1 [22.5 kB] Fetched 22.5 kB in 0s (1254 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdfnqa7pb/libmtdev1t64_1.1.7-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Fetched 20.6 kB in 0s (1179 kB/s) dpkg-name: info: moved 'libxau6_1%3a1.0.11-1_arm64.deb' to '/srv/rebuilderd/tmp/tmptninrofm/libxau6_1.0.11-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libheif-plugin-dav1d arm64 1.20.2-2+b4 [18.1 kB] Fetched 18.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvdj1tqw2/libheif-plugin-dav1d_1.20.2-2+b4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libdrm2 arm64 2.4.129-1 [38.4 kB] Fetched 38.4 kB in 0s (1842 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyaqy6q4r/libdrm2_2.4.129-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Fetched 22.1 kB in 0s (1220 kB/s) dpkg-name: info: moved 'xorg-sgml-doctools_1%3a1.11-1.1_all.deb' to '/srv/rebuilderd/tmp/tmpawjxc9nx/xorg-sgml-doctools_1.11-1.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libdav1d7 arm64 1.5.2-1 [247 kB] Fetched 247 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3tb600nm/libdav1d7_1.5.2-1_arm64.deb' Downloading dependency 1 of 477: libcolamd3:arm64=1:7.12.1+dfsg-1 Downloading dependency 2 of 477: libgl2ps1.4:arm64=1.4.2+dfsg1-4 Downloading dependency 3 of 477: libopengl-dev:arm64=1.7.0-1+b2 Downloading dependency 4 of 477: libcurl4-openssl-dev:arm64=8.18.0~rc2-1 Downloading dependency 5 of 477: perl:arm64=5.40.1-7 Downloading dependency 6 of 477: libxcb-xkb1:arm64=1.17.0-2+b1 Downloading dependency 7 of 477: xz-utils:arm64=5.8.1-2 Downloading dependency 8 of 477: libcxsparse4:arm64=1:7.12.1+dfsg-1 Downloading dependency 9 of 477: shared-mime-info:arm64=2.4-5+b3 Downloading dependency 10 of 477: libngtcp2-crypto-ossl-dev:arm64=1.16.0-1 Downloading dependency 11 of 477: libmd0:arm64=1.1.0-2+b1 Downloading dependency 12 of 477: libqt6core6t64:arm64=6.9.2+dfsg-3 Downloading dependency 13 of 477: gcc-15:arm64=15.2.0-11 Downloading dependency 14 of 477: libxext-dev:arm64=2:1.3.4-1+b3 Downloading dependency 15 of 477: krb5-multidev:arm64=1.22.1-2 Downloading dependency 16 of 477: libgmp10:arm64=2:6.3.0+dfsg-5 Downloading dependency 17 of 477: libngtcp2-16:arm64=1.16.0-1 Downloading dependency 18 of 477: libxext6:arm64=2:1.3.4-1+b3 Downloading dependency 19 of 477: libfltk-gl1.3t64:arm64=1.3.11-3 Downloading dependency 20 of 477: libumfpack6:arm64=1:7.12.1+dfsg-1 Downloading dependency 21 of 477: libkadm5clnt-mit12:arm64=1.22.1-2 Downloading dependency 22 of 477: libx11-xcb1:arm64=2:1.8.12-1 Downloading dependency 23 of 477: libglu1-mesa-dev:arm64=9.0.2-1.1+b3 Downloading dependency 24 of 477: gfortran-15:arm64=15.2.0-11 Downloading dependency 25 of 477: libpsl5t64:arm64=0.21.2-1.1+b1 Downloading dependency 26 of 477: libgdbm6t64:arm64=1.26-1 Downloading dependency 27 of 477: libpcre2-16-0:arm64=10.46-1 Downloading dependency 28 of 477: libudev1:arm64=259~rc3-1 Downloading dependency 29 of 477: ucf:arm64=3.0052 Downloading dependency 30 of 477: build-essential:arm64=12.12 Downloading dependency 31 of 477: libxcb-randr0:arm64=1.17.0-2+b1 Downloading dependency 32 of 477: libglpk40:arm64=5.0-2 Downloading dependency 33 of 477: dh-strip-nondeterminism:arm64=1.15.0-1 Downloading dependency 34 of 477: perl-modules-5.40:arm64=5.40.1-7 Downloading dependency 35 of 477: libxau-dev:arm64=1:1.0.11-1 Downloading dependency 36 of 477: dash:arm64=0.5.12-12 Downloading dependency 37 of 477: rpcsvc-proto:arm64=1.4.3-1+b1 Downloading dependency 38 of 477: libavahi-common3:arm64=0.8-17 Downloading dependency 39 of 477: libcurl4t64:arm64=8.18.0~rc2-1 Downloading dependency 40 of 477: libqt5concurrent5t64:arm64=5.15.17+dfsg-5 Downloading dependency 41 of 477: libfftw3-double3:arm64=3.3.10-2+b1 Downloading dependency 42 of 477: libgraphite2-3:arm64=1.3.14-11 Downloading dependency 43 of 477: libxcb1:arm64=1.17.0-2+b1 Downloading dependency 44 of 477: gfortran-aarch64-linux-gnu:arm64=4:15.2.0-4 Downloading dependency 45 of 477: libwebpmux3:arm64=1.5.0-0.1 Downloading dependency 46 of 477: libsystemd0:arm64=259~rc3-1 Downloading dependency 47 of 477: libsndfile1:arm64=1.2.2-3 Downloading dependency 48 of 477: libpython3.13-minimal:arm64=3.13.11-1+b1 Downloading dependency 49 of 477: man-db:arm64=2.13.1-1 Downloading dependency 50 of 477: diffutils:arm64=1:3.12-1 Downloading dependency 51 of 477: fontconfig-config:arm64=2.15.0-2.4 Downloading dependency 52 of 477: libmount1:arm64=2.41.3-1 Downloading dependency 53 of 477: 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dependency 86 of 477: libselinux1:arm64=3.9-4+b1 Downloading dependency 87 of 477: libsframe2:arm64=2.45.50.20251209-1 Downloading dependency 88 of 477: libxdmcp6:arm64=1:1.1.5-1 Downloading dependency 89 of 477: gettext-base:arm64=0.23.2-1 Downloading dependency 90 of 477: libpipeline1:arm64=1.5.8-2 Downloading dependency 91 of 477: octave-dev:arm64=10.3.0-3 Downloading dependency 92 of 477: libevdev2:arm64=1.13.6+dfsg-1 Downloading dependency 93 of 477: libxcb-image0:arm64=0.4.0-2+b2 Downloading dependency 94 of 477: libbz2-1.0:arm64=1.0.8-6 Downloading dependency 95 of 477: libatomic1:arm64=15.2.0-11 Downloading dependency 96 of 477: ncurses-base:arm64=6.5+20251123-1 Downloading dependency 97 of 477: libpsl-dev:arm64=0.21.2-1.1+b1 Downloading dependency 98 of 477: libkdb5-10t64:arm64=1.22.1-2 Downloading dependency 99 of 477: libp11-kit-dev:arm64=0.25.10-1 Downloading dependency 100 of 477: libhdf5-hl-310:arm64=1.14.5+repack-4 Downloading dependency 101 of 477: libqt6xml6:arm64=6.9.2+dfsg-3 Downloading dependency 102 of 477: libpam-modules-bin:arm64=1.7.0-5 Downloading dependency 103 of 477: zlib1g:arm64=1:1.3.dfsg+really1.3.1-1+b2 Downloading dependency 104 of 477: libwebpdecoder3:arm64=1.5.0-0.1 Downloading dependency 105 of 477: libqt6core5compat6:arm64=6.9.2-3 Downloading dependency 106 of 477: liblapack-dev:arm64=3.12.1-7 Downloading dependency 107 of 477: libqt5network5t64:arm64=5.15.17+dfsg-5 Downloading dependency 108 of 477: libxcb-xinput0:arm64=1.17.0-2+b1 Downloading dependency 109 of 477: libxxf86vm1:arm64=1:1.1.4-2 Downloading dependency 110 of 477: findutils:arm64=4.10.0-3 Downloading dependency 111 of 477: libstdc++-15-dev:arm64=15.2.0-11 Downloading dependency 112 of 477: g++-15:arm64=15.2.0-11 Downloading dependency 113 of 477: groff-base:arm64=1.23.0-10 Downloading dependency 114 of 477: libevent-2.1-7t64:arm64=2.1.12-stable-10+b1 Downloading dependency 115 of 477: libcom-err2:arm64=1.47.2-3+b4 Downloading dependency 116 of 477: libicu76:arm64=76.1-4 Downloading dependency 117 of 477: libportaudio2:arm64=19.7.0-1 Downloading dependency 118 of 477: libheif-plugin-libde265:arm64=1.20.2-2+b4 Downloading dependency 119 of 477: libtext-charwidth-perl:arm64=0.04-11+b4 Downloading dependency 120 of 477: coreutils:arm64=9.7-3 Downloading dependency 121 of 477: libxml-namespacesupport-perl:arm64=1.12-2 Downloading dependency 122 of 477: libedit2:arm64=3.1-20250104-1 Downloading dependency 123 of 477: libmtdev1t64:arm64=1.1.7-1 Downloading dependency 124 of 477: libxau6:arm64=1:1.0.11-1 Downloading dependency 125 of 477: libheif-plugin-dav1d:arm64=1.20.2-2+b4 Downloading dependency 126 of 477: libdrm2:arm64=2.4.129-1 Downloading dependency 127 of 477: xorg-sgml-doctools:arm64=1:1.11-1.1 Downloading dependency 128 of 477: libdav1d7:arm64=1.5.2-1 Downloading dependency 129 of 477: liblcms2-2:arm64=2.17-1Get:1 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.17-1 [152 kB] Fetched 152 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplwtbn7i8/liblcms2-2_2.17-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Fetched 29.6 kB in 0s (2840 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7hhj1ado/pkgconf-bin_1.8.1-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libsmartcols1 arm64 2.41.3-1 [139 kB] Fetched 139 kB in 0s (7893 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwnyrgylv/libsmartcols1_2.41.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 file arm64 1:5.46-5 [43.7 kB] Fetched 43.7 kB in 0s (0 B/s) dpkg-name: info: moved 'file_1%3a5.46-5_arm64.deb' to '/srv/rebuilderd/tmp/tmpqi953zt6/file_5.46-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgomp1 arm64 15.2.0-11 [126 kB] Fetched 126 kB in 0s (5987 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2_qan8y4/libgomp1_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-xfixes0 arm64 1.17.0-2+b1 [110 kB] Fetched 110 kB in 0s (5557 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp90yyc11h/libxcb-xfixes0_1.17.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 dpkg-dev all 1.22.21 [1338 kB] Fetched 1338 kB in 0s (48.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpokcu_kmy/dpkg-dev_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libmp3lame0 arm64 3.100-6+b3 [355 kB] Fetched 355 kB in 0s (26.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg0lxoa3s/libmp3lame0_3.100-6+b3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 texinfo-lib arm64 7.2-5 [774 kB] Fetched 774 kB in 0s (31.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1fooar2d/texinfo-lib_7.2-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libqt6gui6 arm64 6.9.2+dfsg-3 [2880 kB] Fetched 2880 kB in 0s (74.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfv3rl21f/libqt6gui6_6.9.2+dfsg-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 ncurses-bin arm64 6.5+20251123-1 [438 kB] Fetched 438 kB in 0s (38.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyfxj30iq/ncurses-bin_6.5+20251123-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Fetched 47.3 kB in 0s (2410 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7rrf_5e9/libtasn1-6_4.20.0-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 debhelper all 13.29 [943 kB] Fetched 943 kB in 0s (32.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpacnpw9l9/debhelper_13.29_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (5026 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaf78307q/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 dh-autoreconf all 21 [12.2 kB] Fetched 12.2 kB in 0s (619 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7e58czwh/dh-autoreconf_21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Fetched 51.3 kB in 0s (4700 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8i5hxhgt/libdeflate-dev_1.23-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5 [329 kB] Fetched 329 kB in 0s (14.5 MB/s) dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-5_arm64.deb' to '/srv/rebuilderd/tmp/tmpg4kxvhze/libgmpxx4ldbl_6.3.0+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgslcblas0 arm64 2.8+dfsg-5.1 [91.8 kB] Fetched 91.8 kB in 0s (4737 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqph_7vsp/libgslcblas0_2.8+dfsg-5.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgcc-s1 arm64 15.2.0-11 [53.4 kB] Fetched 53.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp31u2oi9_/libgcc-s1_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Fetched 103 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5_arm64.deb' to '/srv/rebuilderd/tmp/tmpa067w93z/libmagic1t64_5.46-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 readline-common all 8.3-3 [74.8 kB] Fetched 74.8 kB in 0s (3700 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwhesevrx/readline-common_8.3-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 debianutils arm64 5.23.2 [92.4 kB] Fetched 92.4 kB in 0s (7899 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn1v47kks/debianutils_5.23.2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgl1-mesa-dri arm64 25.2.8-2+b2 [47.2 kB] Fetched 47.2 kB in 0s (4199 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuipwu1ib/libgl1-mesa-dri_25.2.8-2+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libqt6widgets6 arm64 6.9.2+dfsg-3 [2471 kB] Fetched 2471 kB in 0s (75.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc6kldfur/libqt6widgets6_6.9.2+dfsg-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Fetched 96.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbxo1cha_/libtasn1-6-dev_4.20.0-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Fetched 146 kB in 0s (7552 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsmqj2qbs/liblerc4_4.0.0+ds-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 qt5-qmake-bin arm64 5.15.17+dfsg-5 [921 kB] Fetched 921 kB in 0s (72.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfxskzn9c/qt5-qmake-bin_5.15.17+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgl-dev arm64 1.7.0-1+b2 [101 kB] Fetched 101 kB in 0s (1282 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpignrrqe4/libgl-dev_1.7.0-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 gcc arm64 4:15.2.0-4 [5156 B] Fetched 5156 B in 0s (0 B/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpcqui1gsc/gcc_15.2.0-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Fetched 20.6 kB in 0s (905 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpna9pyeqb/libxml-sax-base-perl_1.09-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 gzip arm64 1.13-1 [135 kB] Fetched 135 kB in 0s (6789 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplm5tdsf_/gzip_1.13-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libharfbuzz0b arm64 12.2.0-1 [485 kB] Fetched 485 kB in 0s (40.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnb34ngeg/libharfbuzz0b_12.2.0-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libseccomp2 arm64 2.6.0-2+b1 [50.9 kB] Fetched 50.9 kB in 0s (3331 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9qq9xhyb/libseccomp2_2.6.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgsl-dev arm64 2.8+dfsg-5.1 [1177 kB] Fetched 1177 kB in 0s (53.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf43f9hy_/libgsl-dev_2.8+dfsg-5.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libuuid1 arm64 2.41.3-1 [37.9 kB] Fetched 37.9 kB in 0s (2160 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnyj54dtu/libuuid1_2.41.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-shape0 arm64 1.17.0-2+b1 [106 kB] Fetched 106 kB in 0s (9164 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9m33yuzx/libxcb-shape0_1.17.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libheif1 arm64 1.20.2-2+b4 [504 kB] Fetched 504 kB in 0s (17.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdj33td03/libheif1_1.20.2-2+b4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Fetched 343 kB in 0s (17.3 MB/s) dpkg-name: info: moved 'libx11-data_2%3a1.8.12-1_all.deb' to '/srv/rebuilderd/tmp/tmpuvgzl_c5/libx11-data_1.8.12-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libfftw3-long3 arm64 3.3.10-2+b1 [546 kB] Fetched 546 kB in 0s (40.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvgxe3v63/libfftw3-long3_3.3.10-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 util-linux arm64 2.41.3-1 [1124 kB] Fetched 1124 kB in 0s (57.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpesh3hnp7/util-linux_2.41.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Fetched 173 kB in 0s (9981 kB/s) dpkg-name: info: moved 'libjpeg62-turbo_1%3a2.1.5-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpksyd76jr/libjpeg62-turbo_2.1.5-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libcholmod5 arm64 1:7.12.1+dfsg-1 [549 kB] Fetched 549 kB in 0s (25.7 MB/s) dpkg-name: info: moved 'libcholmod5_1%3a7.12.1+dfsg-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpd21nrhgb/libcholmod5_7.12.1+dfsg-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libqrupdate1 arm64 1.1.5-3 [31.5 kB] Fetched 31.5 kB in 0s (1323 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7__d5odn/libqrupdate1_1.1.5-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 bzip2 arm64 1.0.8-6 [39.5 kB] Fetched 39.5 kB in 0s (3719 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1n1g5ra7/bzip2_1.0.8-6_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-4 [72.2 kB] Fetched 72.2 kB in 0s (6953 kB/s) dpkg-name: info: moved 'libjpeg-dev_1%3a2.1.5-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpok4swg3z/libjpeg-dev_2.1.5-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhwy1t64 arm64 1.3.0-2 [426 kB] Fetched 426 kB in 0s (19.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvc7ocb4e/libhwy1t64_1.3.0-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Fetched 169 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfnuzhn7j/libreadline8t64_8.3-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgbm1 arm64 25.2.8-2+b2 [45.8 kB] Fetched 45.8 kB in 0s (4084 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu7xqnjq6/libgbm1_25.2.8-2+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libjbig-dev arm64 2.1-6.1+b2 [30.5 kB] Fetched 30.5 kB in 0s (1917 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe41cr0x0/libjbig-dev_2.1-6.1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libwayland-client0 arm64 1.24.0-2+b1 [27.5 kB] Fetched 27.5 kB in 0s (1481 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvtq8xkhs/libwayland-client0_1.24.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-cursor0 arm64 0.1.5-1 [17.1 kB] Fetched 17.1 kB in 0s (861 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp65nau7nx/libxcb-cursor0_0.1.5-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libcc1-0 arm64 15.2.0-11 [41.4 kB] Fetched 41.4 kB in 0s (2080 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplrxb2sz9/libcc1-0_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Fetched 388 kB in 0s (36.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoptz6wv3/libssh2-1-dev_1.11.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libitm1 arm64 15.2.0-11 [24.1 kB] Fetched 24.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6kdnhfm9/libitm1_15.2.0-11_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Fetched 55.0 kB in 0s (3480 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi0ol5lnk/libsasl2-2_2.1.28+dfsg1-10_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.7.1-1 [334 kB] Fetched 334 kB in 0s (31.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnrmnsy4z/libtiff6_4.7.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Fetched 1846 kB in 0s (88.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6a1zv4br/liblapack3_3.12.1-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 liblsan0 arm64 15.2.0-11 [1194 kB] Fetched 1194 kB in 0s (59.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpckpu9tq8/liblsan0_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libopus0 arm64 1.5.2-2 [2813 kB] Fetched 2813 kB in 0s (77.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkc1b4fgw/libopus0_1.5.2-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-11 [19.6 MB] Fetched 19.6 MB in 0s (154 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt8uzkgqp/gcc-15-aarch64-linux-gnu_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 liblqr-1-0 arm64 0.4.2-2.1+b2 [27.0 kB] Fetched 27.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbdtisp67/liblqr-1-0_0.4.2-2.1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libqt6printsupport6 arm64 6.9.2+dfsg-3 [209 kB] Fetched 209 kB in 0s (9640 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8z23am89/libqt6printsupport6_6.9.2+dfsg-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libts0t64 arm64 1.22-1.1+b1 [61.6 kB] Fetched 61.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp1w53y6r/libts0t64_1.22-1.1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Fetched 115 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1w8ayfkq/libxcb-render0_1.17.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 bsdextrautils arm64 2.41.3-1 [97.5 kB] Fetched 97.5 kB in 0s (5235 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_spkbf02/bsdextrautils_2.41.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.194-1 [184 kB] Fetched 184 kB in 0s (10.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppzs0ijrf/libelf1t64_0.194-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 procps arm64 2:4.0.4-9 [871 kB] Fetched 871 kB in 0s (51.5 MB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-9_arm64.deb' to '/srv/rebuilderd/tmp/tmpblow4jdr/procps_4.0.4-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libsharpyuv-dev arm64 1.5.0-0.1 [118 kB] Fetched 118 kB in 0s (6620 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpejrluewy/libsharpyuv-dev_1.5.0-0.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Fetched 69.0 kB in 0s (3082 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsbm6l4kq/libuchardet0_0.0.8-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgfortran-15-dev arm64 15.2.0-11 [411 kB] Fetched 411 kB in 0s (16.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp86jjasrf/libgfortran-15-dev_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 dwz arm64 0.16-2 [100 kB] Fetched 100 kB in 0s (8486 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyfmy67b5/dwz_0.16-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libcurl3t64-gnutls arm64 8.18.0~rc2-1 [365 kB] Fetched 365 kB in 0s (28.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx2wuh_zr/libcurl3t64-gnutls_8.18.0~rc2-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 base-files arm64 14 [72.9 kB] Fetched 72.9 kB in 0s (4563 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp99x7i5wx/base-files_14_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 automake all 1:1.18.1-3 [878 kB] Fetched 878 kB in 0s (39.5 MB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-3_all.deb' to '/srv/rebuilderd/tmp/tmpescv0qqg/automake_1.18.1-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Fetched 235 kB in 0s (10.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1_v1e4hn/libssh2-1t64_1.11.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 qtbase5-dev-tools arm64 5.15.17+dfsg-5 [713 kB] Fetched 713 kB in 0s (30.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf_afemjs/qtbase5-dev-tools_5.15.17+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 g++ arm64 4:15.2.0-4 [1332 B] Fetched 1332 B in 0s (83.8 kB/s) dpkg-name: info: moved 'g++_4%3a15.2.0-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpsun_bajt/g++_15.2.0-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libjansson4 arm64 2.14-2+b3 [39.2 kB] Fetched 39.2 kB in 0s (1909 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsogpsurc/libjansson4_2.14-2+b3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgprofng0 arm64 2.45.50.20251209-1 [679 kB] Fetched 679 kB in 0s (27.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb71p_2yc/libgprofng0_2.45.50.20251209-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libqhull-r8.0 arm64 2020.2-7 [229 kB] Fetched 229 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpngdjuu5t/libqhull-r8.0_2020.2-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libqt5test5t64 arm64 5.15.17+dfsg-5 [139 kB] Fetched 139 kB in 0s (7267 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb46n2nkd/libqt5test5t64_5.15.17+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-glx0 arm64 1.17.0-2+b1 [123 kB] Fetched 123 kB in 0s (6350 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_8trcbzk/libxcb-glx0_1.17.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxdmcp-dev arm64 1:1.1.5-1 [44.2 kB] Fetched 44.2 kB in 0s (0 B/s) dpkg-name: info: moved 'libxdmcp-dev_1%3a1.1.5-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpvns5un7j/libxdmcp-dev_1.1.5-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgraphicsmagick-q16-3t64 arm64 1.4+really1.3.46-2 [1080 kB] Fetched 1080 kB in 0s (49.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnd6uacp9/libgraphicsmagick-q16-3t64_1.4+really1.3.46-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 qtchooser arm64 66-2+b1 [24.5 kB] Fetched 24.5 kB in 0s (1005 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprcczhand/qtchooser_66-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-util1 arm64 0.4.1-1 [23.6 kB] Fetched 23.6 kB in 0s (1332 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbz4l3shn/libxcb-util1_0.4.1-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libtext-unidecode-perl all 1.30-3 [101 kB] Fetched 101 kB in 0s (7911 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpflpcolf6/libtext-unidecode-perl_1.30-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 octave-common all 10.3.0-3 [6653 kB] Fetched 6653 kB in 0s (132 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1k510r0z/octave-common_10.3.0-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 dpkg arm64 1.22.21 [1521 kB] Fetched 1521 kB in 0s (118 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7pb9kkg0/dpkg_1.22.21_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libqt5printsupport5t64 arm64 5.15.17+dfsg-5 [199 kB] Fetched 199 kB in 0s (8821 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8_0m_m7v/libqt5printsupport5t64_5.15.17+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libglvnd0 arm64 1.7.0-1+b2 [41.6 kB] Fetched 41.6 kB in 0s (1884 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkfqlpfzz/libglvnd0_1.7.0-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libopengl0 arm64 1.7.0-1+b2 [32.1 kB] Fetched 32.1 kB in 0s (1743 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0nzwjdxa/libopengl0_1.7.0-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b2 [917 kB] Fetched 917 kB in 0s (69.3 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b2_arm64.deb' to '/srv/rebuilderd/tmp/tmpw_prqhze/zlib1g-dev_1.3.dfsg+really1.3.1-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libasound2t64 arm64 1.2.15-2 [346 kB] Fetched 346 kB in 0s (17.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3syisvzw/libasound2t64_1.2.15-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-4 [44.5 kB] Fetched 44.5 kB in 0s (3602 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpma_xkjr5/libhdf5-hl-fortran-310_1.14.5+repack-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-present0 arm64 1.17.0-2+b1 [106 kB] Fetched 106 kB in 0s (6520 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplm_m83yg/libxcb-present0_1.17.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libpcre2-8-0 arm64 10.46-1 [262 kB] Fetched 262 kB in 0s (24.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxq_wj_l_/libpcre2-8-0_10.46-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libqt6openglwidgets6 arm64 6.9.2+dfsg-3 [50.1 kB] Fetched 50.1 kB in 0s (2495 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyboso3ah/libqt6openglwidgets6_6.9.2+dfsg-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 patch arm64 2.8-2 [128 kB] Fetched 128 kB in 0s (5272 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_77ndb5b/patch_2.8-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libbsd0 arm64 0.12.2-2 [129 kB] Fetched 129 kB in 0s (6774 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbnfz72na/libbsd0_0.12.2-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libqscintilla2-qt6-15 arm64 2.14.1+dfsg-2 [1056 kB] Fetched 1056 kB in 0s (33.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppq6l8jwl/libqscintilla2-qt6-15_2.14.1+dfsg-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Fetched 114 kB in 0s (8191 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx16k_hgd/libsharpyuv0_1.5.0-0.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libqt5opengl5t64 arm64 5.15.17+dfsg-5 [144 kB] Fetched 144 kB in 0s (6207 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2x_mbxfg/libqt5opengl5t64_5.15.17+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 make arm64 4.4.1-3 [453 kB] Fetched 453 kB in 0s (18.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv5dyd_jh/make_4.4.1-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libctf0 arm64 2.45.50.20251209-1 [85.6 kB] Fetched 85.6 kB in 0s (4584 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjcpnmfzw/libctf0_2.45.50.20251209-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Fetched 271 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptl24tdvq/libwebp7_1.5.0-0.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Fetched 305 kB in 0s (13.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpme1qb03r/libldap-dev_2.6.10+dfsg-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libarpack2t64 arm64 3.9.1-6 [84.2 kB] Fetched 84.2 kB in 0s (4112 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqvqswy77/libarpack2t64_3.9.1-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Fetched 135 kB in 0s (7336 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjm0zdxb1/libblas3_3.12.1-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libamd3 arm64 1:7.12.1+dfsg-1 [48.0 kB] Fetched 48.0 kB in 0s (2873 kB/s) dpkg-name: info: moved 'libamd3_1%3a7.12.1+dfsg-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpwox61982/libamd3_7.12.1+dfsg-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 perl-base arm64 5.40.1-7 [1528 kB] Fetched 1528 kB in 0s (115 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptg6g33dh/perl-base_5.40.1-7_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (623 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1q72tuvp/netbase_6.5_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Fetched 489 kB in 0s (33.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcecqlqhk/fonts-dejavu-mono_2.37-8_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxkbcommon0 arm64 1.12.3-1 [135 kB] Fetched 135 kB in 0s (7198 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkh9drko2/libxkbcommon0_1.12.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (3029 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoor2zixq/autotools-dev_20240727.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libsz2 arm64 1.1.4-2 [8072 B] Fetched 8072 B in 0s (511 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvh0mqnww/libsz2_1.1.4-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libc-gconv-modules-extra arm64 2.42-6 [1158 kB] Fetched 1158 kB in 0s (39.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd7mnlk2q/libc-gconv-modules-extra_2.42-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libzstd1 arm64 1.5.7+dfsg-2 [260 kB] Fetched 260 kB in 0s (13.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg14efixy/libzstd1_1.5.7+dfsg-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 binutils arm64 2.45.50.20251209-1 [278 kB] Fetched 278 kB in 0s (13.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdw54mccr/binutils_2.45.50.20251209-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libfftw3-single3 arm64 3.3.10-2+b1 [517 kB] Fetched 517 kB in 0s (46.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbz_1hwxg/libfftw3-single3_3.3.10-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libhogweed6t64 arm64 3.10.2-1 [332 kB] Fetched 332 kB in 0s (15.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwdgmsb2j/libhogweed6t64_3.10.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Fetched 105 kB in 0s (7189 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2fhpj_rq/libxcb-shm0_1.17.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb1-dev arm64 1.17.0-2+b1 [182 kB] Fetched 182 kB in 0s (8190 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2p4hsdwp/libxcb1-dev_1.17.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libssl3t64 arm64 3.5.4-1 [2725 kB] Fetched 2725 kB in 0s (150 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkijcf7sa/libssl3t64_3.5.4-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 imagemagick arm64 8:7.1.2.8+dfsg1-1 [21.8 kB] Fetched 21.8 kB in 0s (1076 kB/s) dpkg-name: info: moved 'imagemagick_8%3a7.1.2.8+dfsg1-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpdmorgpfk/imagemagick_7.1.2.8+dfsg1-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcrypt1 arm64 1:4.5.1-1 [93.9 kB] Fetched 93.9 kB in 0s (4658 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.5.1-1_arm64.deb' to '/srv/rebuilderd/tmp/tmptuvvqoak/libcrypt1_4.5.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5 [621 kB] Fetched 621 kB in 0s (37.3 MB/s) dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-5_arm64.deb' to '/srv/rebuilderd/tmp/tmpfxxyo8w_/libgmp-dev_6.3.0+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libfftw3-bin arm64 3.3.10-2+b1 [44.3 kB] Fetched 44.3 kB in 0s (1827 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxjhk6czz/libfftw3-bin_3.3.10-2+b1_arm64.deb' Downloading dependency 130 of 477: pkgconf-bin:arm64=1.8.1-4 Downloading dependency 131 of 477: libsmartcols1:arm64=2.41.3-1 Downloading dependency 132 of 477: file:arm64=1:5.46-5 Downloading dependency 133 of 477: libgomp1:arm64=15.2.0-11 Downloading dependency 134 of 477: libxcb-xfixes0:arm64=1.17.0-2+b1 Downloading dependency 135 of 477: dpkg-dev:arm64=1.22.21 Downloading dependency 136 of 477: libmp3lame0:arm64=3.100-6+b3 Downloading dependency 137 of 477: texinfo-lib:arm64=7.2-5 Downloading dependency 138 of 477: libqt6gui6:arm64=6.9.2+dfsg-3 Downloading dependency 139 of 477: ncurses-bin:arm64=6.5+20251123-1 Downloading dependency 140 of 477: libtasn1-6:arm64=4.20.0-2 Downloading dependency 141 of 477: debhelper:arm64=13.29 Downloading dependency 142 of 477: libarchive-zip-perl:arm64=1.68-1 Downloading dependency 143 of 477: dh-autoreconf:arm64=21 Downloading dependency 144 of 477: libdeflate-dev:arm64=1.23-2 Downloading dependency 145 of 477: libgmpxx4ldbl:arm64=2:6.3.0+dfsg-5 Downloading dependency 146 of 477: libgslcblas0:arm64=2.8+dfsg-5.1 Downloading dependency 147 of 477: libgcc-s1:arm64=15.2.0-11 Downloading dependency 148 of 477: libmagic1t64:arm64=1:5.46-5 Downloading dependency 149 of 477: readline-common:arm64=8.3-3 Downloading dependency 150 of 477: debianutils:arm64=5.23.2 Downloading dependency 151 of 477: libgl1-mesa-dri:arm64=25.2.8-2+b2 Downloading dependency 152 of 477: libqt6widgets6:arm64=6.9.2+dfsg-3 Downloading dependency 153 of 477: libtasn1-6-dev:arm64=4.20.0-2 Downloading dependency 154 of 477: liblerc4:arm64=4.0.0+ds-5 Downloading dependency 155 of 477: qt5-qmake-bin:arm64=5.15.17+dfsg-5 Downloading dependency 156 of 477: libgl-dev:arm64=1.7.0-1+b2 Downloading dependency 157 of 477: gcc:arm64=4:15.2.0-4 Downloading dependency 158 of 477: libxml-sax-base-perl:arm64=1.09-3 Downloading dependency 159 of 477: gzip:arm64=1.13-1 Downloading dependency 160 of 477: libharfbuzz0b:arm64=12.2.0-1 Downloading dependency 161 of 477: libseccomp2:arm64=2.6.0-2+b1 Downloading dependency 162 of 477: libgsl-dev:arm64=2.8+dfsg-5.1 Downloading dependency 163 of 477: libuuid1:arm64=2.41.3-1 Downloading dependency 164 of 477: libxcb-shape0:arm64=1.17.0-2+b1 Downloading dependency 165 of 477: libheif1:arm64=1.20.2-2+b4 Downloading dependency 166 of 477: libx11-data:arm64=2:1.8.12-1 Downloading dependency 167 of 477: libfftw3-long3:arm64=3.3.10-2+b1 Downloading dependency 168 of 477: util-linux:arm64=2.41.3-1 Downloading dependency 169 of 477: libjpeg62-turbo:arm64=1:2.1.5-4 Downloading dependency 170 of 477: libcholmod5:arm64=1:7.12.1+dfsg-1 Downloading dependency 171 of 477: libqrupdate1:arm64=1.1.5-3 Downloading dependency 172 of 477: bzip2:arm64=1.0.8-6 Downloading dependency 173 of 477: libjpeg-dev:arm64=1:2.1.5-4 Downloading dependency 174 of 477: libhwy1t64:arm64=1.3.0-2 Downloading dependency 175 of 477: libreadline8t64:arm64=8.3-3 Downloading dependency 176 of 477: libgbm1:arm64=25.2.8-2+b2 Downloading dependency 177 of 477: libjbig-dev:arm64=2.1-6.1+b2 Downloading dependency 178 of 477: libwayland-client0:arm64=1.24.0-2+b1 Downloading dependency 179 of 477: libxcb-cursor0:arm64=0.1.5-1 Downloading dependency 180 of 477: libcc1-0:arm64=15.2.0-11 Downloading dependency 181 of 477: libssh2-1-dev:arm64=1.11.1-1 Downloading dependency 182 of 477: libitm1:arm64=15.2.0-11 Downloading dependency 183 of 477: libsasl2-2:arm64=2.1.28+dfsg1-10 Downloading dependency 184 of 477: libtiff6:arm64=4.7.1-1 Downloading dependency 185 of 477: liblapack3:arm64=3.12.1-7 Downloading dependency 186 of 477: liblsan0:arm64=15.2.0-11 Downloading dependency 187 of 477: libopus0:arm64=1.5.2-2 Downloading dependency 188 of 477: gcc-15-aarch64-linux-gnu:arm64=15.2.0-11 Downloading dependency 189 of 477: liblqr-1-0:arm64=0.4.2-2.1+b2 Downloading dependency 190 of 477: libqt6printsupport6:arm64=6.9.2+dfsg-3 Downloading dependency 191 of 477: libts0t64:arm64=1.22-1.1+b1 Downloading dependency 192 of 477: libxcb-render0:arm64=1.17.0-2+b1 Downloading dependency 193 of 477: bsdextrautils:arm64=2.41.3-1 Downloading dependency 194 of 477: libelf1t64:arm64=0.194-1 Downloading dependency 195 of 477: procps:arm64=2:4.0.4-9 Downloading dependency 196 of 477: libsharpyuv-dev:arm64=1.5.0-0.1 Downloading dependency 197 of 477: libuchardet0:arm64=0.0.8-2 Downloading dependency 198 of 477: libgfortran-15-dev:arm64=15.2.0-11 Downloading dependency 199 of 477: dwz:arm64=0.16-2 Downloading dependency 200 of 477: libcurl3t64-gnutls:arm64=8.18.0~rc2-1 Downloading dependency 201 of 477: base-files:arm64=14 Downloading dependency 202 of 477: automake:arm64=1:1.18.1-3 Downloading dependency 203 of 477: libssh2-1t64:arm64=1.11.1-1 Downloading dependency 204 of 477: qtbase5-dev-tools:arm64=5.15.17+dfsg-5 Downloading dependency 205 of 477: g++:arm64=4:15.2.0-4 Downloading dependency 206 of 477: libjansson4:arm64=2.14-2+b3 Downloading dependency 207 of 477: libgprofng0:arm64=2.45.50.20251209-1 Downloading dependency 208 of 477: libqhull-r8.0:arm64=2020.2-7 Downloading dependency 209 of 477: libqt5test5t64:arm64=5.15.17+dfsg-5 Downloading dependency 210 of 477: libxcb-glx0:arm64=1.17.0-2+b1 Downloading dependency 211 of 477: libxdmcp-dev:arm64=1:1.1.5-1 Downloading dependency 212 of 477: libgraphicsmagick-q16-3t64:arm64=1.4+really1.3.46-2 Downloading dependency 213 of 477: qtchooser:arm64=66-2+b1 Downloading dependency 214 of 477: libxcb-util1:arm64=0.4.1-1 Downloading dependency 215 of 477: libtext-unidecode-perl:arm64=1.30-3 Downloading dependency 216 of 477: octave-common:arm64=10.3.0-3 Downloading dependency 217 of 477: dpkg:arm64=1.22.21 Downloading dependency 218 of 477: libqt5printsupport5t64:arm64=5.15.17+dfsg-5 Downloading dependency 219 of 477: libglvnd0:arm64=1.7.0-1+b2 Downloading dependency 220 of 477: libopengl0:arm64=1.7.0-1+b2 Downloading dependency 221 of 477: zlib1g-dev:arm64=1:1.3.dfsg+really1.3.1-1+b2 Downloading dependency 222 of 477: libasound2t64:arm64=1.2.15-2 Downloading dependency 223 of 477: libhdf5-hl-fortran-310:arm64=1.14.5+repack-4 Downloading dependency 224 of 477: libxcb-present0:arm64=1.17.0-2+b1 Downloading dependency 225 of 477: libpcre2-8-0:arm64=10.46-1 Downloading dependency 226 of 477: libqt6openglwidgets6:arm64=6.9.2+dfsg-3 Downloading dependency 227 of 477: patch:arm64=2.8-2 Downloading dependency 228 of 477: libbsd0:arm64=0.12.2-2 Downloading dependency 229 of 477: libqscintilla2-qt6-15:arm64=2.14.1+dfsg-2 Downloading dependency 230 of 477: libsharpyuv0:arm64=1.5.0-0.1 Downloading dependency 231 of 477: libqt5opengl5t64:arm64=5.15.17+dfsg-5 Downloading dependency 232 of 477: make:arm64=4.4.1-3 Downloading dependency 233 of 477: libctf0:arm64=2.45.50.20251209-1 Downloading dependency 234 of 477: libwebp7:arm64=1.5.0-0.1 Downloading dependency 235 of 477: libldap-dev:arm64=2.6.10+dfsg-1 Downloading dependency 236 of 477: libarpack2t64:arm64=3.9.1-6 Downloading dependency 237 of 477: libblas3:arm64=3.12.1-7 Downloading dependency 238 of 477: libamd3:arm64=1:7.12.1+dfsg-1 Downloading dependency 239 of 477: perl-base:arm64=5.40.1-7 Downloading dependency 240 of 477: netbase:arm64=6.5 Downloading dependency 241 of 477: fonts-dejavu-mono:arm64=2.37-8 Downloading dependency 242 of 477: libxkbcommon0:arm64=1.12.3-1 Downloading dependency 243 of 477: autotools-dev:arm64=20240727.1 Downloading dependency 244 of 477: libsz2:arm64=1.1.4-2 Downloading dependency 245 of 477: libc-gconv-modules-extra:arm64=2.42-6 Downloading dependency 246 of 477: libzstd1:arm64=1.5.7+dfsg-2 Downloading dependency 247 of 477: binutils:arm64=2.45.50.20251209-1 Downloading dependency 248 of 477: libfftw3-single3:arm64=3.3.10-2+b1 Downloading dependency 249 of 477: libhogweed6t64:arm64=3.10.2-1 Downloading dependency 250 of 477: libxcb-shm0:arm64=1.17.0-2+b1 Downloading dependency 251 of 477: libxcb1-dev:arm64=1.17.0-2+b1 Downloading dependency 252 of 477: libssl3t64:arm64=3.5.4-1 Downloading dependency 253 of 477: imagemagick:arm64=8:7.1.2.8+dfsg1-1 Downloading dependency 254 of 477: libcrypt1:arm64=1:4.5.1-1 Downloading dependency 255 of 477: libgmp-dev:arm64=2:6.3.0+dfsg-5 Downloading dependency 256 of 477: libfftw3-bin:arm64=3.3.10-2+b1 Downloading dependency 257 of 477: libgsl28:arm64=2.8+dfsg-5.1Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgsl28 arm64 2.8+dfsg-5.1 [921 kB] Fetched 921 kB in 0s (36.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpira2lg3z/libgsl28_2.8+dfsg-5.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libqt5core5t64 arm64 5.15.17+dfsg-5 [1812 kB] Fetched 1812 kB in 0s (55.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp64_ajb__/libqt5core5t64_5.15.17+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Fetched 62.1 kB in 0s (3329 kB/s) dpkg-name: info: moved 'libice6_2%3a1.1.1-1_arm64.deb' to '/srv/rebuilderd/tmp/tmplwm0s97n/libice6_1.1.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libsamplerate0 arm64 0.2.2-4+b2 [945 kB] Fetched 945 kB in 0s (63.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpevgonzpv/libsamplerate0_0.2.2-4+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7u69hksv/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-11 [11.1 MB] Fetched 11.1 MB in 0s (183 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpttf1zfrd/g++-15-aarch64-linux-gnu_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libncurses-dev arm64 6.5+20251123-1 [343 kB] Fetched 343 kB in 0s (20.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppvj7vefr/libncurses-dev_6.5+20251123-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Fetched 27.0 kB in 0s (1672 kB/s) dpkg-name: info: moved 'libxrender1_1%3a0.9.12-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpmi6sxqw7/libxrender1_0.9.12-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libcamd3 arm64 1:7.12.1+dfsg-1 [44.7 kB] Fetched 44.7 kB in 0s (3900 kB/s) dpkg-name: info: moved 'libcamd3_1%3a7.12.1+dfsg-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpqg9_vw_2/libcamd3_7.12.1+dfsg-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libffi8 arm64 3.5.2-3 [23.0 kB] Fetched 23.0 kB in 0s (1423 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeet1vmu3/libffi8_3.5.2-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgfortran5 arm64 15.2.0-11 [371 kB] Fetched 371 kB in 0s (31.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmws3btlu/libgfortran5_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Fetched 112 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_s6w_wpr/libnghttp2-dev_1.64.0-1.1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.22.1-2 [53.7 kB] Fetched 53.7 kB in 0s (2508 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwqbysogm/libkadm5srv-mit12_1.22.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libb2-1 arm64 0.98.1-1.1+b2 [16.3 kB] Fetched 16.3 kB in 0s (751 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp59l6usxk/libb2-1_0.98.1-1.1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libllvm19 arm64 1:19.1.7-19 [23.4 MB] Fetched 23.4 MB in 0s (155 MB/s) dpkg-name: info: moved 'libllvm19_1%3a19.1.7-19_arm64.deb' to '/srv/rebuilderd/tmp/tmpnucd6dk3/libllvm19_19.1.7-19_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-11 [626 kB] Fetched 626 kB in 0s (35.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr5mbdnbo/libdb5.3t64_5.3.28+dfsg2-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libdrm-common all 2.4.129-1 [9128 B] Fetched 9128 B in 0s (639 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyvgj1ap4/libdrm-common_2.4.129-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-4 [24.9 kB] Fetched 24.9 kB in 0s (2279 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkaopnbp3/libhdf5-hl-cpp-310_1.14.5+repack-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.22.1-2 [32.2 kB] Fetched 32.2 kB in 0s (1766 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpffti3ktx/libkrb5support0_1.22.1-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Fetched 8808 B in 0s (384 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp579aj_u_/libtext-wrapi18n-perl_0.06-10_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libspqr4 arm64 1:7.12.1+dfsg-1 [136 kB] Fetched 136 kB in 0s (5720 kB/s) dpkg-name: info: moved 'libspqr4_1%3a7.12.1+dfsg-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpozrskfqf/libspqr4_7.12.1+dfsg-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libproxy1v5 arm64 0.5.12-1 [25.7 kB] Fetched 25.7 kB in 0s (973 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpun0d6h3_/libproxy1v5_0.5.12-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 python3 arm64 3.13.9-2 [27.5 kB] Fetched 27.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu1ugj1fx/python3_3.13.9-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-render-util0 arm64 0.3.10-1 [18.5 kB] Fetched 18.5 kB in 0s (1721 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqewkvdpx/libxcb-render-util0_0.3.10-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Fetched 840 kB in 0s (41.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt73ffrqi/fonts-dejavu-core_2.37-8_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-4 [293 kB] Fetched 293 kB in 0s (25.0 MB/s) dpkg-name: info: moved 'libjpeg62-turbo-dev_1%3a2.1.5-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpz391pe94/libjpeg62-turbo-dev_2.1.5-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libqt5opengl5-dev arm64 5.15.17+dfsg-5 [52.4 kB] Fetched 52.4 kB in 0s (3265 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5ssl4p5r/libqt5opengl5-dev_5.15.17+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [173 kB] Fetched 173 kB in 0s (7030 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjgj2mtv_/librtmp-dev_2.4+20151223.gitfa8646d.1-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libblas-dev arm64 3.12.1-7 [145 kB] Fetched 145 kB in 0s (5753 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdhfup89o/libblas-dev_3.12.1-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Fetched 387 kB in 0s (19.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40rlxqrr/libfontconfig1_2.15.0-2.4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libltdl7 arm64 2.5.4-9 [415 kB] Fetched 415 kB in 0s (38.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy37kc60_/libltdl7_2.5.4-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Fetched 9716 B in 0s (764 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbauru4z5/libkeyutils1_1.6.3-6_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Fetched 19.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzqvaczez/libsasl2-modules-db_2.1.28+dfsg1-10_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libaudit1 arm64 1:4.1.2-1+b1 [59.7 kB] Fetched 59.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpsba1piqx/libaudit1_4.1.2-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 texinfo all 7.2-5 [1973 kB] Fetched 1973 kB in 0s (62.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq5fxwuca/texinfo_7.2-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libbrotli-dev arm64 1.1.0-2+b9 [305 kB] Fetched 305 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpii0yjftk/libbrotli-dev_1.1.0-2+b9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libegl-dev arm64 1.7.0-1+b2 [19.5 kB] Fetched 19.5 kB in 0s (953 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx8nc7euc/libegl-dev_1.7.0-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libtsan2 arm64 15.2.0-11 [2399 kB] Fetched 2399 kB in 0s (89.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn3vmpqro/libtsan2_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libc6 arm64 2.42-6 [1459 kB] Fetched 1459 kB in 0s (63.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5lraxsli/libc6_2.42-6_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-7 [300 kB] Fetched 300 kB in 0s (17.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj3haunmf/libxml-libxml-perl_2.0207+dfsg+really+2.0134-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libhwasan0 arm64 15.2.0-11 [1479 kB] Fetched 1479 kB in 0s (42.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmporh_fhdk/libhwasan0_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 binutils-common arm64 2.45.50.20251209-1 [2541 kB] Fetched 2541 kB in 0s (108 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe8ziwdq7/binutils-common_2.45.50.20251209-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4 [1196 B] Fetched 1196 B in 0s (76.7 kB/s) dpkg-name: info: moved 'g++-aarch64-linux-gnu_4%3a15.2.0-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpkm8ufzar/g++-aarch64-linux-gnu_15.2.0-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libasan8 arm64 15.2.0-11 [2601 kB] Fetched 2601 kB in 0s (82.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplw7t0n2u/libasan8_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 sed arm64 4.9-2+b1 [326 kB] Fetched 326 kB in 0s (21.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuukhsx_x/sed_4.9-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Fetched 795 kB in 0s (30.4 MB/s) dpkg-name: info: moved 'libx11-6_2%3a1.8.12-1_arm64.deb' to '/srv/rebuilderd/tmp/tmps6i4poq4/libx11-6_1.8.12-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 gfortran arm64 4:15.2.0-4 [1428 B] Fetched 1428 B in 0s (71.6 kB/s) dpkg-name: info: moved 'gfortran_4%3a15.2.0-4_arm64.deb' to '/srv/rebuilderd/tmp/tmperm62ev4/gfortran_15.2.0-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libubsan1 arm64 15.2.0-11 [1064 kB] Fetched 1064 kB in 0s (52.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf_ajprzo/libubsan1_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libjack-jackd2-0 arm64 1.9.22~dfsg-5 [265 kB] Fetched 265 kB in 0s (12.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5znzmu5m/libjack-jackd2-0_1.9.22~dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 gcc-15-base arm64 15.2.0-11 [54.0 kB] Fetched 54.0 kB in 0s (3713 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpad7uoyi_/gcc-15-base_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libmagickwand-7.q16-10 arm64 8:7.1.2.8+dfsg1-1 [269 kB] Fetched 269 kB in 0s (13.9 MB/s) dpkg-name: info: moved 'libmagickwand-7.q16-10_8%3a7.1.2.8+dfsg1-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpjc8d4t7n/libmagickwand-7.q16-10_7.1.2.8+dfsg1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Fetched 56.3 kB in 0s (5402 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphg7rcv2q/librtmp1_2.4+20151223.gitfa8646d.1-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgnutls-dane0t64 arm64 3.8.11-3 [467 kB] Fetched 467 kB in 0s (22.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf807d5br/libgnutls-dane0t64_3.8.11-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (5506 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdxgqm6p8/debconf_1.5.91_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libqt5dbus5t64 arm64 5.15.17+dfsg-5 [204 kB] Fetched 204 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphva627ig/libqt5dbus5t64_5.15.17+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libncurses6 arm64 6.5+20251123-1 [96.5 kB] Fetched 96.5 kB in 0s (5110 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8j8rlkzq/libncurses6_6.5+20251123-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libintl-perl all 1.35-1 [690 kB] Fetched 690 kB in 0s (34.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy1hfej_q/libintl-perl_1.35-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libpython3.13-stdlib arm64 3.13.11-1+b1 [1903 kB] Fetched 1903 kB in 0s (94.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvazpho5m/libpython3.13-stdlib_3.13.11-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libbinutils arm64 2.45.50.20251209-1 [670 kB] Fetched 670 kB in 0s (57.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9el2799r/libbinutils_2.45.50.20251209-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libqt5svg5-dev arm64 5.15.17-2 [13.1 kB] Fetched 13.1 kB in 0s (1189 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgv_so90a/libqt5svg5-dev_5.15.17-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libaec0 arm64 1.1.4-2 [22.6 kB] Fetched 22.6 kB in 0s (1261 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmv77grio/libaec0_1.1.4-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libvulkan1 arm64 1.4.328.1-1 [139 kB] Fetched 139 kB in 0s (5151 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjz243r0w/libvulkan1_1.4.328.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libstdc++6 arm64 15.2.0-11 [647 kB] Fetched 647 kB in 0s (27.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3z1nc410/libstdc++6_15.2.0-11_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libperl5.40 arm64 5.40.1-7 [4134 kB] Fetched 4134 kB in 0s (112 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_olcafhs/libperl5.40_5.40.1-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libisl23 arm64 0.27-1 [601 kB] Fetched 601 kB in 0s (27.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2_6laq92/libisl23_0.27-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libqt5svg5 arm64 5.15.17-2 [128 kB] Fetched 128 kB in 0s (6818 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_hx3ny75/libqt5svg5_5.15.17-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpiqn9hi78/libaudit-common_4.1.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 mesa-libgallium arm64 25.2.8-2+b2 [10.3 MB] Fetched 10.3 MB in 0s (87.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplny9nqj9/mesa-libgallium_25.2.8-2+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 qtbase5-dev arm64 5.15.17+dfsg-5 [1121 kB] Fetched 1121 kB in 0s (44.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxb3dl5by/qtbase5-dev_5.15.17+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 tzdata all 2025c-2 [263 kB] Fetched 263 kB in 0s (12.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp385vtoc7/tzdata_2025c-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgl1 arm64 1.7.0-1+b2 [90.9 kB] Fetched 90.9 kB in 0s (5012 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_akqdauk/libgl1_1.7.0-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Fetched 96.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9e5x4kmy/libexpat1_2.7.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgnutls30t64 arm64 3.8.11-3 [1400 kB] Fetched 1400 kB in 0s (81.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfcvi103v/libgnutls30t64_3.8.11-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (2547 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8kssd6m5/sensible-utils_0.0.26_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libpython3-stdlib arm64 3.13.9-2 [10.5 kB] Fetched 10.5 kB in 0s (593 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn9_d_mi9/libpython3-stdlib_3.13.9-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxshmfence1 arm64 1.3.3-1 [11.1 kB] Fetched 11.1 kB in 0s (574 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb1ie995p/libxshmfence1_1.3.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-keysyms1 arm64 0.4.1-1 [16.8 kB] Fetched 16.8 kB in 0s (942 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjkunvc0c/libxcb-keysyms1_0.4.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libaec-dev arm64 1.1.4-2 [20.3 kB] Fetched 20.3 kB in 0s (1101 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps6rq2uxw/libaec-dev_1.1.4-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libglib2.0-0t64 arm64 2.86.3-1 [1437 kB] Fetched 1437 kB in 0s (49.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv7uorpjs/libglib2.0-0t64_2.86.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgraphicsmagick++-q16-12t64 arm64 1.4+really1.3.46-2 [118 kB] Fetched 118 kB in 0s (5669 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbxgtxtn_/libgraphicsmagick++-q16-12t64_1.4+really1.3.46-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 bc arm64 1.07.1-4+b1 [101 kB] Fetched 101 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp16kgxp7h/bc_1.07.1-4+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libinput10 arm64 1.30.0-1 [141 kB] Fetched 141 kB in 0s (3688 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd_kid7et/libinput10_1.30.0-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.2-1 [1613 kB] Fetched 1613 kB in 0s (61.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo5oj41gy/gettext_0.23.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 dh-python all 6.20251204.1 [114 kB] Fetched 114 kB in 0s (6223 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2idzttp2/dh-python_6.20251204.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libidn2-dev arm64 2.3.8-4 [102 kB] Fetched 102 kB in 0s (5678 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprplu5ag0/libidn2-dev_2.3.8-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 tex-common all 6.20 [29.7 kB] Fetched 29.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx7qdmqrt/tex-common_6.20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libegl1 arm64 1.7.0-1+b2 [34.0 kB] Fetched 34.0 kB in 0s (2149 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5d5pxnf_/libegl1_1.7.0-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Fetched 338 kB in 0s (12.9 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5_arm64.deb' to '/srv/rebuilderd/tmp/tmps_95rsk5/libmagic-mgc_5.46-5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.22 [216 kB] Fetched 216 kB in 0s (14.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxrb2z8mx/po-debconf_1.0.22_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libfltk1.3t64 arm64 1.3.11-3 [522 kB] Fetched 522 kB in 0s (22.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_uv03bjs/libfltk1.3t64_1.3.11-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libqt6network6 arm64 6.9.2+dfsg-3 [738 kB] Fetched 738 kB in 0s (33.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwx903ptv/libqt6network6_6.9.2+dfsg-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 liblzma5 arm64 5.8.1-2 [302 kB] Fetched 302 kB in 0s (13.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp19ml6f7/liblzma5_5.8.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 liblerc-dev arm64 4.0.0+ds-5 [164 kB] Fetched 164 kB in 0s (6023 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpswgkaxpj/liblerc-dev_4.0.0+ds-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Fetched 113 kB in 0s (3586 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8gvsmfrk/libwebpdemux2_1.5.0-0.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Fetched 30.4 kB in 0s (1376 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd1jin9a8/libjbig0_2.1-6.1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libpam0g arm64 1.7.0-5 [68.8 kB] Fetched 68.8 kB in 0s (5542 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9wi74f3l/libpam0g_1.7.0-5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libeigen3-dev all 3.4.0-5 [1034 kB] Fetched 1034 kB in 0s (51.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1dpfjt79/libeigen3-dev_3.4.0-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxinerama1 arm64 2:1.1.4-3+b4 [16.0 kB] Fetched 16.0 kB in 0s (0 B/s) dpkg-name: info: moved 'libxinerama1_2%3a1.1.4-3+b4_arm64.deb' to '/srv/rebuilderd/tmp/tmpu8rcj3xl/libxinerama1_1.1.4-3+b4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 hdf5-helpers arm64 1.14.5+repack-4 [26.7 kB] Fetched 26.7 kB in 0s (1384 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvan8bgd9/hdf5-helpers_1.14.5+repack-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsensors-config all 1:3.6.2-2 [16.2 kB] Fetched 16.2 kB in 0s (878 kB/s) dpkg-name: info: moved 'libsensors-config_1%3a3.6.2-2_all.deb' to '/srv/rebuilderd/tmp/tmppw2u2x2c/libsensors-config_3.6.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libdebhelper-perl all 13.29 [92.6 kB] Fetched 92.6 kB in 0s (5502 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfxjgwuiy/libdebhelper-perl_13.29_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 imagemagick-7-common all 8:7.1.2.8+dfsg1-1 [69.3 kB] Fetched 69.3 kB in 0s (4540 kB/s) dpkg-name: info: moved 'imagemagick-7-common_8%3a7.1.2.8+dfsg1-1_all.deb' to '/srv/rebuilderd/tmp/tmp9bm1ro8g/imagemagick-7-common_7.1.2.8+dfsg1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 cpp-15 arm64 15.2.0-11 [1276 B] Fetched 1276 B in 0s (56.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb8dfewej/cpp-15_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libwacom9 arm64 2.16.1-1 [25.6 kB] Fetched 25.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe_1zkqd8/libwacom9_2.16.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libwacom-common all 2.16.1-1 [112 kB] Fetched 112 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz5bk9zlq/libwacom-common_2.16.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libreadline-dev arm64 8.3-3 [163 kB] Fetched 163 kB in 0s (8527 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1wndgzqd/libreadline-dev_8.3-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Fetched 330 kB in 0s (16.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnggcemem/libzstd-dev_1.5.7+dfsg-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libssl-dev arm64 3.5.4-1 [3377 kB] Fetched 3377 kB in 0s (89.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8krqwjm5/libssl-dev_3.5.4-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 openssl-provider-legacy arm64 3.5.4-1 [306 kB] Fetched 306 kB in 0s (15.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkt2xoz0e/openssl-provider-legacy_3.5.4-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libdebconfclient0 arm64 0.282 [11.0 kB] Fetched 11.0 kB in 0s (474 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv8gc80us/libdebconfclient0_0.282_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 qt5-qmake arm64 5.15.17+dfsg-5 [225 kB] Fetched 225 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplbw3f4rj/qt5-qmake_5.15.17+dfsg-5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcrypt-dev arm64 1:4.5.1-1 [126 kB] Fetched 126 kB in 0s (0 B/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.5.1-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpb_9dkg81/libcrypt-dev_4.5.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 autoconf all 2.72-3.1 [494 kB] Fetched 494 kB in 0s (12.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw1i62s_h/autoconf_2.72-3.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-11 [10.1 MB] Fetched 10.1 MB in 0s (110 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4kby5nrj/cpp-15-aarch64-linux-gnu_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Fetched 25.7 kB in 0s (1378 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps3c3m8g0/libngtcp2-crypto-ossl0_1.16.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 mawk arm64 1.3.4.20250131-1 [134 kB] Fetched 134 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2uj2frho/mawk_1.3.4.20250131-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libngtcp2-crypto-gnutls8 arm64 1.16.0-1 [23.8 kB] Fetched 23.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi6k19hm/libngtcp2-crypto-gnutls8_1.16.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libqt6help6 arm64 6.9.2-3 [171 kB] Fetched 171 kB in 0s (8595 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppljh9pj9/libqt6help6_6.9.2-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 python3-minimal arm64 3.13.9-2 [27.5 kB] Fetched 27.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1chs7lbm/python3-minimal_3.13.9-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libmpfr6 arm64 4.2.2-2 [685 kB] Fetched 685 kB in 0s (64.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp56yr_zkn/libmpfr6_4.2.2-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 media-types all 14.0.0 [30.8 kB] Fetched 30.8 kB in 0s (1388 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdkxb4ceg/media-types_14.0.0_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (2137 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp19yvfuh6/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdouble-conversion3 arm64 3.4.0-1 [37.7 kB] Fetched 37.7 kB in 0s (2206 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnd77i8uo/libdouble-conversion3_3.4.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libmagickcore-7.q16-10 arm64 8:7.1.2.8+dfsg1-1 [1623 kB] Fetched 1623 kB in 0s (71.2 MB/s) dpkg-name: info: moved 'libmagickcore-7.q16-10_8%3a7.1.2.8+dfsg1-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpa9cqbh4_/libmagickcore-7.q16-10_7.1.2.8+dfsg1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libqt6opengl6 arm64 6.9.2+dfsg-3 [381 kB] Fetched 381 kB in 0s (18.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuh5ugdfo/libqt6opengl6_6.9.2+dfsg-3_arm64.deb' Downloading dependency 258 of 477: libqt5core5t64:arm64=5.15.17+dfsg-5 Downloading dependency 259 of 477: libice6:arm64=2:1.1.1-1 Downloading dependency 260 of 477: libsamplerate0:arm64=0.2.2-4+b2 Downloading dependency 261 of 477: intltool-debian:arm64=0.35.0+20060710.6 Downloading dependency 262 of 477: g++-15-aarch64-linux-gnu:arm64=15.2.0-11 Downloading dependency 263 of 477: libncurses-dev:arm64=6.5+20251123-1 Downloading dependency 264 of 477: libxrender1:arm64=1:0.9.12-1 Downloading dependency 265 of 477: libcamd3:arm64=1:7.12.1+dfsg-1 Downloading dependency 266 of 477: libffi8:arm64=3.5.2-3 Downloading dependency 267 of 477: libgfortran5:arm64=15.2.0-11 Downloading dependency 268 of 477: libnghttp2-dev:arm64=1.64.0-1.1+b1 Downloading dependency 269 of 477: libkadm5srv-mit12:arm64=1.22.1-2 Downloading dependency 270 of 477: libb2-1:arm64=0.98.1-1.1+b2 Downloading dependency 271 of 477: libllvm19:arm64=1:19.1.7-19 Downloading dependency 272 of 477: libdb5.3t64:arm64=5.3.28+dfsg2-11 Downloading dependency 273 of 477: libdrm-common:arm64=2.4.129-1 Downloading dependency 274 of 477: libhdf5-hl-cpp-310:arm64=1.14.5+repack-4 Downloading dependency 275 of 477: libkrb5support0:arm64=1.22.1-2 Downloading dependency 276 of 477: libtext-wrapi18n-perl:arm64=0.06-10 Downloading dependency 277 of 477: libspqr4:arm64=1:7.12.1+dfsg-1 Downloading dependency 278 of 477: libproxy1v5:arm64=0.5.12-1 Downloading dependency 279 of 477: python3:arm64=3.13.9-2 Downloading dependency 280 of 477: libxcb-render-util0:arm64=0.3.10-1 Downloading dependency 281 of 477: fonts-dejavu-core:arm64=2.37-8 Downloading dependency 282 of 477: libjpeg62-turbo-dev:arm64=1:2.1.5-4 Downloading dependency 283 of 477: libqt5opengl5-dev:arm64=5.15.17+dfsg-5 Downloading dependency 284 of 477: librtmp-dev:arm64=2.4+20151223.gitfa8646d.1-3 Downloading dependency 285 of 477: libblas-dev:arm64=3.12.1-7 Downloading dependency 286 of 477: libfontconfig1:arm64=2.15.0-2.4 Downloading dependency 287 of 477: libltdl7:arm64=2.5.4-9 Downloading dependency 288 of 477: libkeyutils1:arm64=1.6.3-6 Downloading dependency 289 of 477: libsasl2-modules-db:arm64=2.1.28+dfsg1-10 Downloading dependency 290 of 477: libaudit1:arm64=1:4.1.2-1+b1 Downloading dependency 291 of 477: texinfo:arm64=7.2-5 Downloading dependency 292 of 477: libbrotli-dev:arm64=1.1.0-2+b9 Downloading dependency 293 of 477: libegl-dev:arm64=1.7.0-1+b2 Downloading dependency 294 of 477: libtsan2:arm64=15.2.0-11 Downloading dependency 295 of 477: libc6:arm64=2.42-6 Downloading dependency 296 of 477: libxml-libxml-perl:arm64=2.0207+dfsg+really+2.0134-7 Downloading dependency 297 of 477: libhwasan0:arm64=15.2.0-11 Downloading dependency 298 of 477: binutils-common:arm64=2.45.50.20251209-1 Downloading dependency 299 of 477: g++-aarch64-linux-gnu:arm64=4:15.2.0-4 Downloading dependency 300 of 477: libasan8:arm64=15.2.0-11 Downloading dependency 301 of 477: sed:arm64=4.9-2+b1 Downloading dependency 302 of 477: libx11-6:arm64=2:1.8.12-1 Downloading dependency 303 of 477: gfortran:arm64=4:15.2.0-4 Downloading dependency 304 of 477: libubsan1:arm64=15.2.0-11 Downloading dependency 305 of 477: libjack-jackd2-0:arm64=1.9.22~dfsg-5 Downloading dependency 306 of 477: gcc-15-base:arm64=15.2.0-11 Downloading dependency 307 of 477: libmagickwand-7.q16-10:arm64=8:7.1.2.8+dfsg1-1 Downloading dependency 308 of 477: librtmp1:arm64=2.4+20151223.gitfa8646d.1-3 Downloading dependency 309 of 477: libgnutls-dane0t64:arm64=3.8.11-3 Downloading dependency 310 of 477: debconf:arm64=1.5.91 Downloading dependency 311 of 477: libqt5dbus5t64:arm64=5.15.17+dfsg-5 Downloading dependency 312 of 477: libncurses6:arm64=6.5+20251123-1 Downloading dependency 313 of 477: libintl-perl:arm64=1.35-1 Downloading dependency 314 of 477: libpython3.13-stdlib:arm64=3.13.11-1+b1 Downloading dependency 315 of 477: libbinutils:arm64=2.45.50.20251209-1 Downloading dependency 316 of 477: libqt5svg5-dev:arm64=5.15.17-2 Downloading dependency 317 of 477: libaec0:arm64=1.1.4-2 Downloading dependency 318 of 477: libvulkan1:arm64=1.4.328.1-1 Downloading dependency 319 of 477: libstdc++6:arm64=15.2.0-11 Downloading dependency 320 of 477: libperl5.40:arm64=5.40.1-7 Downloading dependency 321 of 477: libisl23:arm64=0.27-1 Downloading dependency 322 of 477: libqt5svg5:arm64=5.15.17-2 Downloading dependency 323 of 477: libaudit-common:arm64=1:4.1.2-1 Downloading dependency 324 of 477: mesa-libgallium:arm64=25.2.8-2+b2 Downloading dependency 325 of 477: qtbase5-dev:arm64=5.15.17+dfsg-5 Downloading dependency 326 of 477: tzdata:arm64=2025c-2 Downloading dependency 327 of 477: libgl1:arm64=1.7.0-1+b2 Downloading dependency 328 of 477: libexpat1:arm64=2.7.3-1 Downloading dependency 329 of 477: libgnutls30t64:arm64=3.8.11-3 Downloading dependency 330 of 477: sensible-utils:arm64=0.0.26 Downloading dependency 331 of 477: libpython3-stdlib:arm64=3.13.9-2 Downloading dependency 332 of 477: libxshmfence1:arm64=1.3.3-1 Downloading dependency 333 of 477: libxcb-keysyms1:arm64=0.4.1-1 Downloading dependency 334 of 477: libaec-dev:arm64=1.1.4-2 Downloading dependency 335 of 477: libglib2.0-0t64:arm64=2.86.3-1 Downloading dependency 336 of 477: libgraphicsmagick++-q16-12t64:arm64=1.4+really1.3.46-2 Downloading dependency 337 of 477: bc:arm64=1.07.1-4+b1 Downloading dependency 338 of 477: libinput10:arm64=1.30.0-1 Downloading dependency 339 of 477: gettext:arm64=0.23.2-1 Downloading dependency 340 of 477: dh-python:arm64=6.20251204.1 Downloading dependency 341 of 477: libidn2-dev:arm64=2.3.8-4 Downloading dependency 342 of 477: tex-common:arm64=6.20 Downloading dependency 343 of 477: libegl1:arm64=1.7.0-1+b2 Downloading dependency 344 of 477: libmagic-mgc:arm64=1:5.46-5 Downloading dependency 345 of 477: po-debconf:arm64=1.0.22 Downloading dependency 346 of 477: libfltk1.3t64:arm64=1.3.11-3 Downloading dependency 347 of 477: libqt6network6:arm64=6.9.2+dfsg-3 Downloading dependency 348 of 477: liblzma5:arm64=5.8.1-2 Downloading dependency 349 of 477: liblerc-dev:arm64=4.0.0+ds-5 Downloading dependency 350 of 477: libwebpdemux2:arm64=1.5.0-0.1 Downloading dependency 351 of 477: libjbig0:arm64=2.1-6.1+b2 Downloading dependency 352 of 477: libpam0g:arm64=1.7.0-5 Downloading dependency 353 of 477: libeigen3-dev:arm64=3.4.0-5 Downloading dependency 354 of 477: libxinerama1:arm64=2:1.1.4-3+b4 Downloading dependency 355 of 477: hdf5-helpers:arm64=1.14.5+repack-4 Downloading dependency 356 of 477: libsensors-config:arm64=1:3.6.2-2 Downloading dependency 357 of 477: libdebhelper-perl:arm64=13.29 Downloading dependency 358 of 477: imagemagick-7-common:arm64=8:7.1.2.8+dfsg1-1 Downloading dependency 359 of 477: cpp-15:arm64=15.2.0-11 Downloading dependency 360 of 477: libwacom9:arm64=2.16.1-1 Downloading dependency 361 of 477: libwacom-common:arm64=2.16.1-1 Downloading dependency 362 of 477: libreadline-dev:arm64=8.3-3 Downloading dependency 363 of 477: libzstd-dev:arm64=1.5.7+dfsg-2 Downloading dependency 364 of 477: libssl-dev:arm64=3.5.4-1 Downloading dependency 365 of 477: openssl-provider-legacy:arm64=3.5.4-1 Downloading dependency 366 of 477: libdebconfclient0:arm64=0.282 Downloading dependency 367 of 477: qt5-qmake:arm64=5.15.17+dfsg-5 Downloading dependency 368 of 477: libcrypt-dev:arm64=1:4.5.1-1 Downloading dependency 369 of 477: autoconf:arm64=2.72-3.1 Downloading dependency 370 of 477: cpp-15-aarch64-linux-gnu:arm64=15.2.0-11 Downloading dependency 371 of 477: libngtcp2-crypto-ossl0:arm64=1.16.0-1 Downloading dependency 372 of 477: mawk:arm64=1.3.4.20250131-1 Downloading dependency 373 of 477: libngtcp2-crypto-gnutls8:arm64=1.16.0-1 Downloading dependency 374 of 477: libqt6help6:arm64=6.9.2-3 Downloading dependency 375 of 477: python3-minimal:arm64=3.13.9-2 Downloading dependency 376 of 477: libmpfr6:arm64=4.2.2-2 Downloading dependency 377 of 477: media-types:arm64=14.0.0 Downloading dependency 378 of 477: init-system-helpers:arm64=1.69 Downloading dependency 379 of 477: libdouble-conversion3:arm64=3.4.0-1 Downloading dependency 380 of 477: libmagickcore-7.q16-10:arm64=8:7.1.2.8+dfsg1-1 Downloading dependency 381 of 477: libqt6opengl6:arm64=6.9.2+dfsg-3 Downloading dependency 382 of 477: binutils-aarch64-linux-gnu:arm64=2.45.50.20251209-1Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 binutils-aarch64-linux-gnu arm64 2.45.50.20251209-1 [858 kB] Fetched 858 kB in 0s (66.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp12fpjld3/binutils-aarch64-linux-gnu_2.45.50.20251209-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libhdf5-310 arm64 1.14.5+repack-4 [1177 kB] Fetched 1177 kB in 0s (84.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm4boa0hh/libhdf5-310_1.14.5+repack-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10.2-1 [1319 kB] Fetched 1319 kB in 0s (61.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpss2d4mun/nettle-dev_3.10.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libhdf5-cpp-310 arm64 1.14.5+repack-4 [129 kB] Fetched 129 kB in 0s (6053 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8mj_zuyk/libhdf5-cpp-310_1.14.5+repack-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.22.1-2 [16.1 kB] Fetched 16.1 kB in 0s (715 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplk7v6df0/libkrb5-dev_1.22.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libccolamd3 arm64 1:7.12.1+dfsg-1 [47.2 kB] Fetched 47.2 kB in 0s (3607 kB/s) dpkg-name: info: moved 'libccolamd3_1%3a7.12.1+dfsg-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp46s0b4ym/libccolamd3_7.12.1+dfsg-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 cpp arm64 4:15.2.0-4 [1568 B] Fetched 1568 B in 0s (121 kB/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpx870_qdy/cpp_15.2.0-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libpng16-16t64 arm64 1.6.53-1 [275 kB] Fetched 275 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa5i9snp2/libpng16-16t64_1.6.53-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 imagemagick-7.q16 arm64 8:7.1.2.8+dfsg1-1 [728 kB] Fetched 728 kB in 0s (44.8 MB/s) dpkg-name: info: moved 'imagemagick-7.q16_8%3a7.1.2.8+dfsg1-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpyp40uq74/imagemagick-7.q16_7.1.2.8+dfsg1-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 matlab-support-dev all 0.3 [5444 B] Fetched 5444 B in 0s (232 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0l0ae20u/matlab-support-dev_0.3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libhdf5-fortran-310 arm64 1.14.5+repack-4 [114 kB] Fetched 114 kB in 0s (6388 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9o5t1jlq/libhdf5-fortran-310_1.14.5+repack-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-11 [10.8 MB] Fetched 10.8 MB in 0s (123 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxc8xnoo5/gfortran-15-aarch64-linux-gnu_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libwebp-dev arm64 1.5.0-0.1 [406 kB] Fetched 406 kB in 0s (14.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp77yygh4i/libwebp-dev_1.5.0-0.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libncursesw6 arm64 6.5+20251123-1 [125 kB] Fetched 125 kB in 0s (6672 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq4k1f3x8/libncursesw6_6.5+20251123-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcups2t64 arm64 2.4.16-1 [235 kB] Fetched 235 kB in 0s (11.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfgwcvovc/libcups2t64_2.4.16-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libsensors5 arm64 1:3.6.2-2 [36.4 kB] Fetched 36.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libsensors5_1%3a3.6.2-2_arm64.deb' to '/srv/rebuilderd/tmp/tmp29vzirj8/libsensors5_3.6.2-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libflac14 arm64 1.5.0+ds-5 [153 kB] Fetched 153 kB in 0s (8209 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgwntb9vn/libflac14_1.5.0+ds-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libdpkg-perl all 1.22.21 [650 kB] Fetched 650 kB in 0s (34.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj46o1aee/libdpkg-perl_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libtinfo6 arm64 6.5+20251123-1 [345 kB] Fetched 345 kB in 0s (17.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp71gc_wls/libtinfo6_6.5+20251123-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 fontconfig arm64 2.15.0-2.4 [463 kB] Fetched 463 kB in 0s (17.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplxdt_si9/fontconfig_2.15.0-2.4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libunistring5 arm64 1.3-2 [453 kB] Fetched 453 kB in 0s (26.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkzb5jn47/libunistring5_1.3-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 x11proto-dev all 2024.1-1 [603 kB] Fetched 603 kB in 0s (26.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq3itxzxj/x11proto-dev_2024.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 base-passwd arm64 3.6.8 [54.0 kB] Fetched 54.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy95_8lsz/base-passwd_3.6.8_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Fetched 422 kB in 0s (28.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpan2j4hhw/libfreetype6_2.13.3+dfsg-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libqscintilla2-qt6-l10n all 2.14.1+dfsg-2 [105 kB] Fetched 105 kB in 0s (5717 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpld_04fe_/libqscintilla2-qt6-l10n_2.14.1+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 python3.13-minimal arm64 3.13.11-1+b1 [2060 kB] Fetched 2060 kB in 0s (115 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1gw0yoq_/python3.13-minimal_3.13.11-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-xinerama0 arm64 1.17.0-2+b1 [105 kB] Fetched 105 kB in 0s (4734 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp64ld8acu/libxcb-xinerama0_1.17.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libraw23t64 arm64 0.21.4-2 [371 kB] Fetched 371 kB in 0s (15.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfdmi9n2y/libraw23t64_0.21.4-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Fetched 62.8 kB in 0s (3589 kB/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-9_arm64.deb' to '/srv/rebuilderd/tmp/tmp3c1rtpc6/libproc2-0_4.0.4-9_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.24.2-1 [561 kB] Fetched 561 kB in 0s (28.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4s0ofd3b/libunbound8_1.24.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 python3.13 arm64 3.13.11-1+b1 [770 kB] Fetched 770 kB in 0s (27.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsom5l_xb/python3.13_3.13.11-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libnettle8t64 arm64 3.10.2-1 [305 kB] Fetched 305 kB in 0s (17.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa6wd1z1k/libnettle8t64_3.10.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libcap-ng0 arm64 0.8.5-4+b2 [17.0 kB] Fetched 17.0 kB in 0s (926 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbellj0ab/libcap-ng0_0.8.5-4+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Fetched 53.4 kB in 0s (2665 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsq29e_mc/libxml-sax-perl_1.02+dfsg-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-sync1 arm64 1.17.0-2+b1 [109 kB] Fetched 109 kB in 0s (5782 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpit10k232/libxcb-sync1_1.17.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libsuitesparseconfig7 arm64 1:7.12.1+dfsg-1 [33.4 kB] Fetched 33.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libsuitesparseconfig7_1%3a7.12.1+dfsg-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpxhtyd9nh/libsuitesparseconfig7_7.12.1+dfsg-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgnutls-openssl27t64 arm64 3.8.11-3 [467 kB] Fetched 467 kB in 0s (19.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3otks74i/libgnutls-openssl27t64_3.8.11-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 xtrans-dev all 1.6.0-1 [93.5 kB] Fetched 93.5 kB in 0s (4844 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr59xkrxo/xtrans-dev_1.6.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Fetched 7507 kB in 0s (116 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0jz2jk8y/libz3-4_4.13.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcursor1 arm64 1:1.2.3-1 [39.3 kB] Fetched 39.3 kB in 0s (1462 kB/s) dpkg-name: info: moved 'libxcursor1_1%3a1.2.3-1_arm64.deb' to '/srv/rebuilderd/tmp/tmprrdq70ka/libxcursor1_1.2.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgdbm-compat4t64 arm64 1.26-1 [52.8 kB] Fetched 52.8 kB in 0s (2983 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpclavshll/libgdbm-compat4t64_1.26-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 tar arm64 1.35+dfsg-3.1 [802 kB] Fetched 802 kB in 0s (67.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0naufj6r/tar_1.35+dfsg-3.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-icccm4 arm64 0.4.2-1 [27.2 kB] Fetched 27.2 kB in 0s (1511 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiqwzyjvc/libxcb-icccm4_0.4.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libdbus-1-3 arm64 1.16.2-2 [169 kB] Fetched 169 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptbqiduxr/libdbus-1-3_1.16.2-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Fetched 26.1 kB in 0s (1432 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu2ae32an/pkgconf_1.8.1-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libctf-nobfd0 arm64 2.45.50.20251209-1 [154 kB] Fetched 154 kB in 0s (7296 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbz78n13j/libctf-nobfd0_2.45.50.20251209-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (1274 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl6qcyvic/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libglx-mesa0 arm64 25.2.8-2+b2 [109 kB] Fetched 109 kB in 0s (5487 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb0tknqff/libglx-mesa0_25.2.8-2+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4 [5288 B] Fetched 5288 B in 0s (312 kB/s) dpkg-name: info: moved 'cpp-aarch64-linux-gnu_4%3a15.2.0-4_arm64.deb' to '/srv/rebuilderd/tmp/tmp9r0byim8/cpp-aarch64-linux-gnu_15.2.0-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.2-1 [772 kB] Fetched 772 kB in 0s (68.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp68n0iqq_/autopoint_0.23.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libx11-dev arm64 2:1.8.12-1 [883 kB] Fetched 883 kB in 0s (61.4 MB/s) dpkg-name: info: moved 'libx11-dev_2%3a1.8.12-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpyklcuk5h/libx11-dev_1.8.12-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libwmflite-0.2-7 arm64 0.2.13-2 [71.1 kB] Fetched 71.1 kB in 0s (3280 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg2o1g_i1/libwmflite-0.2-7_0.2.13-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Fetched 71.7 kB in 0s (3819 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdewbxwbi/libnghttp2-14_1.64.0-1.1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 bash arm64 5.3-1 [1507 kB] Fetched 1507 kB in 0s (98.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpltqhd1oy/bash_5.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Fetched 51.6 kB in 0s (2512 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplqo_j_2l/libxft2_2.3.6-1+b4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 liblzma-dev arm64 5.8.1-2 [344 kB] Fetched 344 kB in 0s (17.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp80qjywnz/liblzma-dev_5.8.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libavahi-common-data arm64 0.8-17 [113 kB] Fetched 113 kB in 0s (5478 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpluf12e9w/libavahi-common-data_0.8-17_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libvorbisenc2 arm64 1.3.7-3 [75.5 kB] Fetched 75.5 kB in 0s (3480 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5t2zvjzm/libvorbisenc2_1.3.7-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libogg0 arm64 1.3.6-2 [23.7 kB] Fetched 23.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp33b_mvme/libogg0_1.3.6-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxkbcommon-x11-0 arm64 1.12.3-1 [15.8 kB] Fetched 15.8 kB in 0s (839 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpns6pg_pc/libxkbcommon-x11-0_1.12.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libqt6dbus6 arm64 6.9.2+dfsg-3 [245 kB] Fetched 245 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp58_5hj68/libqt6dbus6_6.9.2+dfsg-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libmpg123-0t64 arm64 1.33.3-1 [146 kB] Fetched 146 kB in 0s (7849 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7sb0zp8j/libmpg123-0t64_1.33.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libcap2 arm64 1:2.75-10+b2 [28.1 kB] Fetched 28.1 kB in 0s (364 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.75-10+b2_arm64.deb' to '/srv/rebuilderd/tmp/tmp61t_dnkw/libcap2_2.75-10+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (4201 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0tvrorov/libpam-runtime_1.7.0-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.22.1-2 [315 kB] Fetched 315 kB in 0s (9969 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo8fquqoj/libkrb5-3_1.22.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libmd4c0 arm64 0.5.2-2+b1 [46.1 kB] Fetched 46.1 kB in 0s (2492 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpprvjjgxb/libmd4c0_0.5.2-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgcc-15-dev arm64 15.2.0-11 [2370 kB] Fetched 2370 kB in 0s (70.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpob2v0low/libgcc-15-dev_15.2.0-11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libfftw3-dev arm64 3.3.10-2+b1 [1280 kB] Fetched 1280 kB in 0s (86.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8yfqz6oe/libfftw3-dev_3.3.10-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Fetched 63.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyzfzr55k/libnghttp3-9_1.12.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 xkb-data all 2.46-1 [830 kB] Fetched 830 kB in 0s (47.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpghtf4p77/xkb-data_2.46-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 octave arm64 10.3.0-3 [8517 kB] Fetched 8517 kB in 0s (108 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1oj6zh00/octave_10.3.0-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4 [1432 B] Fetched 1432 B in 0s (79.2 kB/s) dpkg-name: info: moved 'gcc-aarch64-linux-gnu_4%3a15.2.0-4_arm64.deb' to '/srv/rebuilderd/tmp/tmp4wxwx737/gcc-aarch64-linux-gnu_15.2.0-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxfixes3 arm64 1:6.0.0-2+b4 [20.5 kB] Fetched 20.5 kB in 0s (0 B/s) dpkg-name: info: moved 'libxfixes3_1%3a6.0.0-2+b4_arm64.deb' to '/srv/rebuilderd/tmp/tmpt6kyyjit/libxfixes3_6.0.0-2+b4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [189 kB] Fetched 189 kB in 0s (7119 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzbu727bj/libopenjp2-7_2.5.3-2.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libgnutls28-dev arm64 3.8.11-3 [1426 kB] Fetched 1426 kB in 0s (72.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg20pscny/libgnutls28-dev_3.8.11-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libxcb-dri3-0 arm64 1.17.0-2+b1 [107 kB] Fetched 107 kB in 0s (9343 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd0blfdiw/libxcb-dri3-0_1.17.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 m4 arm64 1.4.20-2 [315 kB] Fetched 315 kB in 0s (16.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmkdhd1_r/m4_1.4.20-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libpam-modules arm64 1.7.0-5 [172 kB] Fetched 172 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsih27nca/libpam-modules_1.7.0-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libqt5xml5t64 arm64 5.15.17+dfsg-5 [120 kB] Fetched 120 kB in 0s (8949 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpesmluvex/libqt5xml5t64_5.15.17+dfsg-5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.15.1+dfsg-2+b1 [591 kB] Fetched 591 kB in 0s (26.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj75w1jrz/libxml2-16_2.15.1+dfsg-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Fetched 179 kB in 0s (9469 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpss9tz_2f/libldap2_2.6.10+dfsg-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libvorbis0a arm64 1.3.7-3 [83.8 kB] Fetched 83.8 kB in 0s (3972 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppy3gim0i/libvorbis0a_1.3.7-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 linux-libc-dev all 6.17.11-1 [2563 kB] Fetched 2563 kB in 0s (83.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpplk1793u/linux-libc-dev_6.17.11-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libc-dev-bin arm64 2.42-6 [59.5 kB] Fetched 59.5 kB in 0s (3310 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvrxy8dqy/libc-dev-bin_2.42-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libnghttp3-dev arm64 1.12.0-1 [91.6 kB] Fetched 91.6 kB in 0s (5511 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0wsnlol5/libnghttp3-dev_1.12.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libqt5widgets5t64 arm64 5.15.17+dfsg-5 [2266 kB] Fetched 2266 kB in 0s (66.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuejvn8ug/libqt5widgets5t64_5.15.17+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libduktape207 arm64 2.7.0-2+b2 [127 kB] Fetched 127 kB in 0s (7270 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm7vlm7rm/libduktape207_2.7.0-2+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libdrm-amdgpu1 arm64 2.4.129-1 [23.0 kB] Fetched 23.0 kB in 0s (940 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjcwqc8a4/libdrm-amdgpu1_2.4.129-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libde265-0 arm64 1.0.16-1+b1 [155 kB] Fetched 155 kB in 0s (14.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5kfml47o/libde265-0_1.0.16-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libc6-dev arm64 2.42-6 [1691 kB] Fetched 1691 kB in 0s (72.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc781132x/libc6-dev_2.42-6_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libtiff-dev arm64 4.7.1-1 [481 kB] Fetched 481 kB in 0s (40.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp87afe6cn/libtiff-dev_4.7.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libglu1-mesa arm64 9.0.2-1.1+b3 [162 kB] Fetched 162 kB in 0s (9349 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk8u4rr7g/libglu1-mesa_9.0.2-1.1+b3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.22.1-2 [127 kB] Fetched 127 kB in 0s (6546 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkid7al__/libgssapi-krb5-2_1.22.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 sysvinit-utils arm64 3.15-6 [34.9 kB] Fetched 34.9 kB in 0s (3221 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_0oda40o/sysvinit-utils_3.15-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251218T082620Z sid/main arm64 libqt5gui5t64 arm64 5.15.17+dfsg-5 [3257 kB] Fetched 3257 kB in 0s (25.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp98s3rrq_/libqt5gui5t64_5.15.17+dfsg-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251215T094804Z sid/main arm64 libhdf5-dev arm64 1.14.5+repack-4 [3219 kB] Fetched 3219 kB in 0s (143 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpum6ik5_7/libhdf5-dev_1.14.5+repack-4_arm64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_arm64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpei08e1u2/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture arm64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.Qn1HUbz5S7 as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.Qn1HUbz5S7 127.0.0.1 - - [11/Mar/2026 05:36:53] code 404, message File not found 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:42923 ./ InRelease 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:42923 ./ Release [462 B] 127.0.0.1 - - [11/Mar/2026 05:36:53] code 404, message File not found 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:42923 ./ Release.gpg 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:42923 ./ Packages [595 kB] Fetched 595 kB in 0s (17.9 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./gcc-15-base_15.2.0-11_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./libc-gconv-modules-extra_2.42-6_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./libc6_2.42-6_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./libgcc-s1_15.2.0-11_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./mawk_1.3.4.20250131-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./base-files_14_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./libtinfo6_6.5%2b20251123-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./debianutils_5.23.2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./bash_5.3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./libacl1_2.3.2-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./libattr1_2.5.2-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./libcap2_2.75-10%2bb2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./libgmp10_6.3.0%2bdfsg-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./libpcre2-8-0_10.46-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./libselinux1_3.9-4%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./libzstd1_1.5.7%2bdfsg-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./libssl3t64_3.5.4-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./openssl-provider-legacy_3.5.4-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./libsystemd0_259%7erc3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:53] "GET /./coreutils_9.7-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./dash_0.5.12-12_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./diffutils_3.12-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libbz2-1.0_1.0.8-6_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./liblzma5_5.8.1-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libmd0_1.1.0-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./tar_1.35%2bdfsg-3.1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./dpkg_1.22.21_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./findutils_4.10.0-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./grep_3.12-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./gzip_1.13-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./hostname_3.25_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./ncurses-bin_6.5%2b20251123-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libcrypt1_4.5.1-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./perl-base_5.40.1-7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./sed_4.9-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libaudit-common_4.1.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libcap-ng0_0.8.5-4%2bb2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libaudit1_4.1.2-1%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libdb5.3t64_5.3.28%2bdfsg2-11_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./debconf_1.5.91_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libpam0g_1.7.0-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libpam-modules-bin_1.7.0-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libpam-modules_1.7.0-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libpam-runtime_1.7.0-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libblkid1_2.41.3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libmount1_2.41.3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libsmartcols1_2.41.3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libudev1_259%7erc3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libuuid1_2.41.3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./util-linux_2.41.3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libdebconfclient0_0.282_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./base-passwd_3.6.8_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./init-system-helpers_1.69_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./libc-bin_2.42-6_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./ncurses-base_6.5%2b20251123-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:36:54] "GET /./sysvinit-utils_3.15-6_arm64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.Qn1HUbz5S7 127.0.0.1 - - [11/Mar/2026 05:36:57] code 404, message File not found 127.0.0.1 - - [11/Mar/2026 05:36:57] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:42923 ./ InRelease 127.0.0.1 - - [11/Mar/2026 05:36:57] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:42923 ./ Release 127.0.0.1 - - [11/Mar/2026 05:36:57] code 404, message File not found 127.0.0.1 - - [11/Mar/2026 05:36:57] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:42923 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.Qn1HUbz5S7 usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [11/Mar/2026 05:37:07] "GET /./libexpat1_2.7.3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:07] "GET /./libgomp1_15.2.0-11_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:07] "GET /./libfftw3-double3_3.3.10-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:07] "GET /./libbrotli1_1.1.0-2%2bb9_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:07] "GET /./libpng16-16t64_1.6.53-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:07] "GET /./libfreetype6_2.13.3%2bdfsg-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:07] "GET /./fonts-dejavu-mono_2.37-8_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:07] "GET /./fonts-dejavu-core_2.37-8_all.deb HTTP/1.1" 200 - 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- [11/Mar/2026 05:37:09] "GET /./libfftw3-long3_3.3.10-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libfftw3-bin_3.3.10-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libfftw3-dev_3.3.10-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./gfortran_15.2.0-4_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./octave-dev_10.3.0-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libwebpdecoder3_1.5.0-0.1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libqt5dbus5t64_5.15.17%2bdfsg-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libqt5network5t64_5.15.17%2bdfsg-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libdeflate-dev_1.23-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libgslcblas0_2.8%2bdfsg-5.1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./qt5-qmake-bin_5.15.17%2bdfsg-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libgsl28_2.8%2bdfsg-5.1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libgsl-dev_2.8%2bdfsg-5.1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libjbig-dev_2.1-6.1%2bb2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libsharpyuv-dev_1.5.0-0.1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./qtchooser_66-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./qtbase5-dev-tools_5.15.17%2bdfsg-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libqt5test5t64_5.15.17%2bdfsg-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libxcb-xinerama0_1.17.0-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libqt5gui5t64_5.15.17%2bdfsg-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libqt5widgets5t64_5.15.17%2bdfsg-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libqt5printsupport5t64_5.15.17%2bdfsg-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libqt5opengl5t64_5.15.17%2bdfsg-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./imagemagick-7.q16_7.1.2.8%2bdfsg1-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./imagemagick_7.1.2.8%2bdfsg1-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libegl-dev_1.7.0-1%2bb2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libqt5xml5t64_5.15.17%2bdfsg-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./qt5-qmake_5.15.17%2bdfsg-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./qtbase5-dev_5.15.17%2bdfsg-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libqt5opengl5-dev_5.15.17%2bdfsg-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libqt5svg5_5.15.17-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libqt5svg5-dev_5.15.17-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./dh-python_6.20251204.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./liblerc-dev_4.0.0%2bds-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libeigen3-dev_3.4.0-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./matlab-support-dev_0.3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libwebp-dev_1.5.0-0.1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./liblzma-dev_5.8.1-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./libtiff-dev_4.7.1-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Mar/2026 05:37:09] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpei08e1u2/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.Qn1HUbz5S7 Reading package lists... Building dependency tree... Reading state information... libcolamd3 is already the newest version (1:7.12.1+dfsg-1). libcolamd3 set to manually installed. libgl2ps1.4 is already the newest version (1.4.2+dfsg1-4). libgl2ps1.4 set to manually installed. libopengl-dev is already the newest version (1.7.0-1+b2). libopengl-dev set to manually installed. libcurl4-openssl-dev is already the newest version (8.18.0~rc2-1). libcurl4-openssl-dev set to manually installed. perl is already the newest version (5.40.1-7). perl set to manually installed. libxcb-xkb1 is already the newest version (1.17.0-2+b1). libxcb-xkb1 set to manually installed. xz-utils is already the newest version (5.8.1-2). xz-utils set to manually installed. libcxsparse4 is already the newest version (1:7.12.1+dfsg-1). libcxsparse4 set to manually installed. shared-mime-info is already the newest version (2.4-5+b3). shared-mime-info set to manually installed. libngtcp2-crypto-ossl-dev is already the newest version (1.16.0-1). libngtcp2-crypto-ossl-dev set to manually installed. libmd0 is already the newest version (1.1.0-2+b1). libqt6core6t64 is already the newest version (6.9.2+dfsg-3). libqt6core6t64 set to manually installed. gcc-15 is already the newest version (15.2.0-11). gcc-15 set to manually installed. libxext-dev is already the newest version (2:1.3.4-1+b3). libxext-dev set to manually installed. krb5-multidev is already the newest version (1.22.1-2). krb5-multidev set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5). libngtcp2-16 is already the newest version (1.16.0-1). libngtcp2-16 set to manually installed. libxext6 is already the newest version (2:1.3.4-1+b3). libxext6 set to manually installed. libfltk-gl1.3t64 is already the newest version (1.3.11-3). libfltk-gl1.3t64 set to manually installed. libumfpack6 is already the newest version (1:7.12.1+dfsg-1). libumfpack6 set to manually installed. libkadm5clnt-mit12 is already the newest version (1.22.1-2). libkadm5clnt-mit12 set to manually installed. libx11-xcb1 is already the newest version (2:1.8.12-1). libx11-xcb1 set to manually installed. libglu1-mesa-dev is already the newest version (9.0.2-1.1+b3). libglu1-mesa-dev set to manually installed. gfortran-15 is already the newest version (15.2.0-11). gfortran-15 set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1+b1). libpsl5t64 set to manually installed. libgdbm6t64 is already the newest version (1.26-1). libgdbm6t64 set to manually installed. libpcre2-16-0 is already the newest version (10.46-1). libpcre2-16-0 set to manually installed. libudev1 is already the newest version (259~rc3-1). ucf is already the newest version (3.0052). ucf set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. libxcb-randr0 is already the newest version (1.17.0-2+b1). libxcb-randr0 set to manually installed. libglpk40 is already the newest version (5.0-2). libglpk40 set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-7). perl-modules-5.40 set to manually installed. libxau-dev is already the newest version (1:1.0.11-1). libxau-dev set to manually installed. dash is already the newest version (0.5.12-12). rpcsvc-proto is already the newest version (1.4.3-1+b1). rpcsvc-proto set to manually installed. libavahi-common3 is already the newest version (0.8-17). libavahi-common3 set to manually installed. libcurl4t64 is already the newest version (8.18.0~rc2-1). libcurl4t64 set to manually installed. libqt5concurrent5t64 is already the newest version (5.15.17+dfsg-5). libqt5concurrent5t64 set to manually installed. libfftw3-double3 is already the newest version (3.3.10-2+b1). libfftw3-double3 set to manually installed. libgraphite2-3 is already the newest version (1.3.14-11). libgraphite2-3 set to manually installed. libxcb1 is already the newest version (1.17.0-2+b1). libxcb1 set to manually installed. gfortran-aarch64-linux-gnu is already the newest version (4:15.2.0-4). gfortran-aarch64-linux-gnu set to manually installed. libwebpmux3 is already the newest version (1.5.0-0.1). libwebpmux3 set to manually installed. libsystemd0 is already the newest version (259~rc3-1). libsndfile1 is already the newest version (1.2.2-3). libsndfile1 set to manually installed. libpython3.13-minimal is already the newest version (3.13.11-1+b1). libpython3.13-minimal set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. diffutils is already the newest version (1:3.12-1). fontconfig-config is already the newest version (2.15.0-2.4). fontconfig-config set to manually installed. libmount1 is already the newest version (2.41.3-1). libpkgconf3 is already the newest version (1.8.1-4). libpkgconf3 set to manually installed. libngtcp2-dev is already the newest version (1.16.0-1). libngtcp2-dev set to manually installed. libp11-kit0 is already the newest version (0.25.10-1). libp11-kit0 set to manually installed. libattr1 is already the newest version (1:2.5.2-3). libqt6sql6 is already the newest version (6.9.2+dfsg-3). libqt6sql6 set to manually installed. comerr-dev is already the newest version (2.1-1.47.2-3+b4). comerr-dev set to manually installed. libtiffxx6 is already the newest version (4.7.1-1). libtiffxx6 set to manually installed. libgssrpc4t64 is already the newest version (1.22.1-2). libgssrpc4t64 set to manually installed. libglx0 is already the newest version (1.7.0-1+b2). libglx0 set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b9). libbrotli1 set to manually installed. libglx-dev is already the newest version (1.7.0-1+b2). libglx-dev set to manually installed. libgudev-1.0-0 is already the newest version (238-7). libgudev-1.0-0 set to manually installed. libblkid1 is already the newest version (2.41.3-1). grep is already the newest version (3.12-1). libdeflate0 is already the newest version (1.23-2). libdeflate0 set to manually installed. libtool is already the newest version (2.5.4-9). libtool set to manually installed. libsqlite3-0 is already the newest version (3.46.1-8). libsqlite3-0 set to manually installed. libjxl0.11 is already the newest version (0.11.1-6). libjxl0.11 set to manually installed. libegl-mesa0 is already the newest version (25.2.8-2+b2). libegl-mesa0 set to manually installed. libinput-bin is already the newest version (1.30.0-1). libinput-bin set to manually installed. libvulkan-dev is already the newest version (1.4.328.1-1). libvulkan-dev set to manually installed. libsm6 is already the newest version (2:1.2.6-1). libsm6 set to manually installed. libidn2-0 is already the newest version (2.3.8-4). libidn2-0 set to manually installed. hicolor-icon-theme is already the newest version (0.18-2). hicolor-icon-theme set to manually installed. hostname is already the newest version (3.25). libc-bin is already the newest version (2.42-6). libacl1 is already the newest version (2.3.2-2+b1). libasound2-data is already the newest version (1.2.15-2). libasound2-data set to manually installed. libk5crypto3 is already the newest version (1.22.1-2). libk5crypto3 set to manually installed. libqt5sql5t64 is already the newest version (5.15.17+dfsg-5). libqt5sql5t64 set to manually installed. libavahi-client3 is already the newest version (0.8-17). libavahi-client3 set to manually installed. x11-common is already the newest version (1:7.7+26). x11-common set to manually installed. libmpc3 is already the newest version (1.3.1-2). libmpc3 set to manually installed. libselinux1 is already the newest version (3.9-4+b1). libsframe2 is already the newest version (2.45.50.20251209-1). libsframe2 set to manually installed. libxdmcp6 is already the newest version (1:1.1.5-1). libxdmcp6 set to manually installed. gettext-base is already the newest version (0.23.2-1). gettext-base set to manually installed. libpipeline1 is already the newest version (1.5.8-2). libpipeline1 set to manually installed. octave-dev is already the newest version (10.3.0-3). octave-dev set to manually installed. libevdev2 is already the newest version (1.13.6+dfsg-1). libevdev2 set to manually installed. libxcb-image0 is already the newest version (0.4.0-2+b2). libxcb-image0 set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). libatomic1 is already the newest version (15.2.0-11). libatomic1 set to manually installed. ncurses-base is already the newest version (6.5+20251123-1). libpsl-dev is already the newest version (0.21.2-1.1+b1). libpsl-dev set to manually installed. libkdb5-10t64 is already the newest version (1.22.1-2). libkdb5-10t64 set to manually installed. libp11-kit-dev is already the newest version (0.25.10-1). libp11-kit-dev set to manually installed. libhdf5-hl-310 is already the newest version (1.14.5+repack-4). libhdf5-hl-310 set to manually installed. libqt6xml6 is already the newest version (6.9.2+dfsg-3). libqt6xml6 set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5). zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b2). libwebpdecoder3 is already the newest version (1.5.0-0.1). libwebpdecoder3 set to manually installed. libqt6core5compat6 is already the newest version (6.9.2-3). libqt6core5compat6 set to manually installed. liblapack-dev is already the newest version (3.12.1-7). liblapack-dev set to manually installed. libqt5network5t64 is already the newest version (5.15.17+dfsg-5). libqt5network5t64 set to manually installed. libxcb-xinput0 is already the newest version (1.17.0-2+b1). libxcb-xinput0 set to manually installed. libxxf86vm1 is already the newest version (1:1.1.4-2). libxxf86vm1 set to manually installed. findutils is already the newest version (4.10.0-3). libstdc++-15-dev is already the newest version (15.2.0-11). libstdc++-15-dev set to manually installed. g++-15 is already the newest version (15.2.0-11). g++-15 set to manually installed. groff-base is already the newest version (1.23.0-10). groff-base set to manually installed. libevent-2.1-7t64 is already the newest version (2.1.12-stable-10+b1). libevent-2.1-7t64 set to manually installed. libcom-err2 is already the newest version (1.47.2-3+b4). libcom-err2 set to manually installed. libicu76 is already the newest version (76.1-4). libicu76 set to manually installed. libportaudio2 is already the newest version (19.7.0-1). libportaudio2 set to manually installed. libheif-plugin-libde265 is already the newest version (1.20.2-2+b4). libheif-plugin-libde265 set to manually installed. libtext-charwidth-perl is already the newest version (0.04-11+b4). libtext-charwidth-perl set to manually installed. coreutils is already the newest version (9.7-3). libxml-namespacesupport-perl is already the newest version (1.12-2). libxml-namespacesupport-perl set to manually installed. libedit2 is already the newest version (3.1-20250104-1). libedit2 set to manually installed. libmtdev1t64 is already the newest version (1.1.7-1). libmtdev1t64 set to manually installed. libxau6 is already the newest version (1:1.0.11-1). libxau6 set to manually installed. libheif-plugin-dav1d is already the newest version (1.20.2-2+b4). libheif-plugin-dav1d set to manually installed. libdrm2 is already the newest version (2.4.129-1). libdrm2 set to manually installed. xorg-sgml-doctools is already the newest version (1:1.11-1.1). xorg-sgml-doctools set to manually installed. libdav1d7 is already the newest version (1.5.2-1). libdav1d7 set to manually installed. liblcms2-2 is already the newest version (2.17-1). liblcms2-2 set to manually installed. pkgconf-bin is already the newest version (1.8.1-4). pkgconf-bin set to manually installed. libsmartcols1 is already the newest version (2.41.3-1). file is already the newest version (1:5.46-5). file set to manually installed. libgomp1 is already the newest version (15.2.0-11). libgomp1 set to manually installed. libxcb-xfixes0 is already the newest version (1.17.0-2+b1). libxcb-xfixes0 set to manually installed. dpkg-dev is already the newest version (1.22.21). dpkg-dev set to manually installed. libmp3lame0 is already the newest version (3.100-6+b3). libmp3lame0 set to manually installed. texinfo-lib is already the newest version (7.2-5). texinfo-lib set to manually installed. libqt6gui6 is already the newest version (6.9.2+dfsg-3). libqt6gui6 set to manually installed. ncurses-bin is already the newest version (6.5+20251123-1). libtasn1-6 is already the newest version (4.20.0-2). libtasn1-6 set to manually installed. debhelper is already the newest version (13.29). debhelper set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. dh-autoreconf is already the newest version (21). dh-autoreconf set to manually installed. libdeflate-dev is already the newest version (1.23-2). libdeflate-dev set to manually installed. libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-5). libgmpxx4ldbl set to manually installed. libgslcblas0 is already the newest version (2.8+dfsg-5.1). libgslcblas0 set to manually installed. libgcc-s1 is already the newest version (15.2.0-11). libmagic1t64 is already the newest version (1:5.46-5). libmagic1t64 set to manually installed. readline-common is already the newest version (8.3-3). readline-common set to manually installed. debianutils is already the newest version (5.23.2). libgl1-mesa-dri is already the newest version (25.2.8-2+b2). libgl1-mesa-dri set to manually installed. libqt6widgets6 is already the newest version (6.9.2+dfsg-3). libqt6widgets6 set to manually installed. libtasn1-6-dev is already the newest version (4.20.0-2). libtasn1-6-dev set to manually installed. liblerc4 is already the newest version (4.0.0+ds-5). liblerc4 set to manually installed. qt5-qmake-bin is already 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libmagickcore-7.q16-10 is already the newest version (8:7.1.2.8+dfsg1-1). libmagickcore-7.q16-10 set to manually installed. libqt6opengl6 is already the newest version (6.9.2+dfsg-3). libqt6opengl6 set to manually installed. binutils-aarch64-linux-gnu is already the newest version (2.45.50.20251209-1). binutils-aarch64-linux-gnu set to manually installed. libhdf5-310 is already the newest version (1.14.5+repack-4). libhdf5-310 set to manually installed. nettle-dev is already the newest version (3.10.2-1). nettle-dev set to manually installed. libhdf5-cpp-310 is already the newest version (1.14.5+repack-4). libhdf5-cpp-310 set to manually installed. libkrb5-dev is already the newest version (1.22.1-2). libkrb5-dev set to manually installed. libccolamd3 is already the newest version (1:7.12.1+dfsg-1). libccolamd3 set to manually installed. cpp is already the newest version (4:15.2.0-4). cpp set to manually installed. libpng16-16t64 is already the newest version (1.6.53-1). libpng16-16t64 set to manually installed. imagemagick-7.q16 is already the newest version (8:7.1.2.8+dfsg1-1). imagemagick-7.q16 set to manually installed. matlab-support-dev is already the newest version (0.3). matlab-support-dev set to manually installed. libhdf5-fortran-310 is already the newest version (1.14.5+repack-4). libhdf5-fortran-310 set to manually installed. gfortran-15-aarch64-linux-gnu is already the newest version (15.2.0-11). gfortran-15-aarch64-linux-gnu set to manually installed. libwebp-dev is already the newest version (1.5.0-0.1). libwebp-dev set to manually installed. libncursesw6 is already the newest version (6.5+20251123-1). libncursesw6 set to manually installed. libcups2t64 is already the newest version (2.4.16-1). libcups2t64 set to manually installed. libsensors5 is already the newest version (1:3.6.2-2). libsensors5 set to manually installed. libflac14 is already the newest version (1.5.0+ds-5). libflac14 set to manually installed. libdpkg-perl is already the newest version (1.22.21). libdpkg-perl set to manually installed. libtinfo6 is already the newest version (6.5+20251123-1). fontconfig is already the newest version (2.15.0-2.4). fontconfig set to manually installed. libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. x11proto-dev is already the newest version (2024.1-1). x11proto-dev set to manually installed. base-passwd is already the newest version (3.6.8). libfreetype6 is already the newest version (2.13.3+dfsg-1). libfreetype6 set to manually installed. libqscintilla2-qt6-l10n is already the newest version (2.14.1+dfsg-2). libqscintilla2-qt6-l10n set to manually installed. python3.13-minimal is already the newest version (3.13.11-1+b1). python3.13-minimal set to manually installed. libxcb-xinerama0 is already the newest version (1.17.0-2+b1). libxcb-xinerama0 set to manually installed. libraw23t64 is already the newest version (0.21.4-2). libraw23t64 set to manually installed. libproc2-0 is already the newest version (2:4.0.4-9). libproc2-0 set to manually installed. libunbound8 is already the newest version (1.24.2-1). libunbound8 set to manually installed. python3.13 is already the newest version (3.13.11-1+b1). python3.13 set to manually installed. libnettle8t64 is already the newest version (3.10.2-1). libnettle8t64 set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b2). libxml-sax-perl is already the newest version (1.02+dfsg-4). libxml-sax-perl set to manually installed. libxcb-sync1 is already the newest version (1.17.0-2+b1). libxcb-sync1 set to manually installed. libsuitesparseconfig7 is already the newest version (1:7.12.1+dfsg-1). libsuitesparseconfig7 set to manually installed. libgnutls-openssl27t64 is already the newest version (3.8.11-3). libgnutls-openssl27t64 set to manually installed. xtrans-dev is already the newest version (1.6.0-1). xtrans-dev set to manually installed. libz3-4 is already the newest version (4.13.3-1). libz3-4 set to manually installed. libxcursor1 is already the newest version (1:1.2.3-1). libxcursor1 set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1). libgdbm-compat4t64 set to manually installed. tar is already the newest version (1.35+dfsg-3.1). libxcb-icccm4 is already the newest version (0.4.2-1). libxcb-icccm4 set to manually installed. libdbus-1-3 is already the newest version (1.16.2-2). libdbus-1-3 set to manually installed. pkgconf is already the newest version (1.8.1-4). pkgconf set to manually installed. libctf-nobfd0 is already the newest version (2.45.50.20251209-1). libctf-nobfd0 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. libglx-mesa0 is already the newest version (25.2.8-2+b2). libglx-mesa0 set to manually installed. cpp-aarch64-linux-gnu is already the newest version (4:15.2.0-4). cpp-aarch64-linux-gnu set to manually installed. autopoint is already the newest version (0.23.2-1). autopoint set to manually installed. libx11-dev is already the newest version (2:1.8.12-1). libx11-dev set to manually installed. libwmflite-0.2-7 is already the newest version (0.2.13-2). libwmflite-0.2-7 set to manually installed. libnghttp2-14 is already the newest version (1.64.0-1.1+b1). libnghttp2-14 set to manually installed. bash is already the newest version (5.3-1). libxft2 is already the newest version (2.3.6-1+b4). libxft2 set to manually installed. liblzma-dev is already the newest version (5.8.1-2). liblzma-dev set to manually installed. libavahi-common-data is already the newest version (0.8-17). libavahi-common-data set to manually installed. libvorbisenc2 is already the newest version (1.3.7-3). libvorbisenc2 set to manually installed. libogg0 is already the newest version (1.3.6-2). libogg0 set to manually installed. libxkbcommon-x11-0 is already the newest version (1.12.3-1). libxkbcommon-x11-0 set to manually installed. libqt6dbus6 is already the newest version (6.9.2+dfsg-3). libqt6dbus6 set to manually installed. libmpg123-0t64 is already the newest version (1.33.3-1). libmpg123-0t64 set to manually installed. libcap2 is already the newest version (1:2.75-10+b2). libpam-runtime is already the newest version (1.7.0-5). libkrb5-3 is already the newest version (1.22.1-2). libkrb5-3 set to manually installed. libmd4c0 is already the newest version (0.5.2-2+b1). libmd4c0 set to manually installed. libgcc-15-dev is already the newest version (15.2.0-11). libgcc-15-dev set to manually installed. libfftw3-dev is already the newest version (3.3.10-2+b1). libfftw3-dev set to manually installed. libnghttp3-9 is already the newest version (1.12.0-1). libnghttp3-9 set to manually installed. xkb-data is already the newest version (2.46-1). xkb-data set to manually installed. octave is already the newest version (10.3.0-3). octave set to manually installed. gcc-aarch64-linux-gnu is already the newest version (4:15.2.0-4). gcc-aarch64-linux-gnu set to manually installed. libxfixes3 is already the newest version (1:6.0.0-2+b4). libxfixes3 set to manually installed. libopenjp2-7 is already the newest version (2.5.3-2.1). libopenjp2-7 set to manually installed. libgnutls28-dev is already the newest version (3.8.11-3). libgnutls28-dev set to manually installed. libxcb-dri3-0 is already the newest version (1.17.0-2+b1). libxcb-dri3-0 set to manually installed. m4 is already the newest version (1.4.20-2). m4 set to manually installed. libpam-modules is already the newest version (1.7.0-5). libqt5xml5t64 is already the newest version (5.15.17+dfsg-5). libqt5xml5t64 set to manually installed. libxml2-16 is already the newest version (2.15.1+dfsg-2+b1). libxml2-16 set to manually installed. libldap2 is already the newest version (2.6.10+dfsg-1). libldap2 set to manually installed. libvorbis0a is already the newest version (1.3.7-3). libvorbis0a set to manually installed. linux-libc-dev is already the newest version (6.17.11-1). linux-libc-dev set to manually installed. libc-dev-bin is already the newest version (2.42-6). libc-dev-bin set to manually installed. libnghttp3-dev is already the newest version (1.12.0-1). libnghttp3-dev set to manually installed. libqt5widgets5t64 is already the newest version (5.15.17+dfsg-5). libqt5widgets5t64 set to manually installed. libduktape207 is already the newest version (2.7.0-2+b2). libduktape207 set to manually installed. libdrm-amdgpu1 is already the newest version (2.4.129-1). libdrm-amdgpu1 set to manually installed. libde265-0 is already the newest version (1.0.16-1+b1). libde265-0 set to manually installed. libc6-dev is already the newest version (2.42-6). libc6-dev set to manually installed. libtiff-dev is already the newest version (4.7.1-1). libtiff-dev set to manually installed. libglu1-mesa is already the newest version (9.0.2-1.1+b3). libglu1-mesa set to manually installed. libgssapi-krb5-2 is already the newest version (1.22.1-2). libgssapi-krb5-2 set to manually installed. sysvinit-utils is already the newest version (3.15-6). libqt5gui5t64 is already the newest version (5.15.17+dfsg-5). libqt5gui5t64 set to manually installed. libhdf5-dev is already the newest version (1.14.5+repack-4). libhdf5-dev set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.Qn1HUbz5S7 (Reading database ... 30105 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.Qn1HUbz5S7 I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.Qn1HUbz5S7 I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.Qn1HUbz5S7... I: success in 96.2092 seconds Downloading dependency 383 of 477: libhdf5-310:arm64=1.14.5+repack-4 Downloading dependency 384 of 477: nettle-dev:arm64=3.10.2-1 Downloading dependency 385 of 477: libhdf5-cpp-310:arm64=1.14.5+repack-4 Downloading dependency 386 of 477: libkrb5-dev:arm64=1.22.1-2 Downloading dependency 387 of 477: libccolamd3:arm64=1:7.12.1+dfsg-1 Downloading dependency 388 of 477: cpp:arm64=4:15.2.0-4 Downloading dependency 389 of 477: libpng16-16t64:arm64=1.6.53-1 Downloading dependency 390 of 477: imagemagick-7.q16:arm64=8:7.1.2.8+dfsg1-1 Downloading dependency 391 of 477: matlab-support-dev:arm64=0.3 Downloading dependency 392 of 477: libhdf5-fortran-310:arm64=1.14.5+repack-4 Downloading dependency 393 of 477: gfortran-15-aarch64-linux-gnu:arm64=15.2.0-11 Downloading dependency 394 of 477: libwebp-dev:arm64=1.5.0-0.1 Downloading dependency 395 of 477: libncursesw6:arm64=6.5+20251123-1 Downloading dependency 396 of 477: libcups2t64:arm64=2.4.16-1 Downloading dependency 397 of 477: libsensors5:arm64=1:3.6.2-2 Downloading dependency 398 of 477: libflac14:arm64=1.5.0+ds-5 Downloading dependency 399 of 477: libdpkg-perl:arm64=1.22.21 Downloading dependency 400 of 477: libtinfo6:arm64=6.5+20251123-1 Downloading dependency 401 of 477: fontconfig:arm64=2.15.0-2.4 Downloading dependency 402 of 477: libunistring5:arm64=1.3-2 Downloading dependency 403 of 477: x11proto-dev:arm64=2024.1-1 Downloading dependency 404 of 477: base-passwd:arm64=3.6.8 Downloading dependency 405 of 477: libfreetype6:arm64=2.13.3+dfsg-1 Downloading dependency 406 of 477: libqscintilla2-qt6-l10n:arm64=2.14.1+dfsg-2 Downloading dependency 407 of 477: python3.13-minimal:arm64=3.13.11-1+b1 Downloading dependency 408 of 477: libxcb-xinerama0:arm64=1.17.0-2+b1 Downloading dependency 409 of 477: libraw23t64:arm64=0.21.4-2 Downloading dependency 410 of 477: libproc2-0:arm64=2:4.0.4-9 Downloading dependency 411 of 477: libunbound8:arm64=1.24.2-1 Downloading dependency 412 of 477: python3.13:arm64=3.13.11-1+b1 Downloading dependency 413 of 477: libnettle8t64:arm64=3.10.2-1 Downloading dependency 414 of 477: libcap-ng0:arm64=0.8.5-4+b2 Downloading dependency 415 of 477: libxml-sax-perl:arm64=1.02+dfsg-4 Downloading dependency 416 of 477: libxcb-sync1:arm64=1.17.0-2+b1 Downloading dependency 417 of 477: libsuitesparseconfig7:arm64=1:7.12.1+dfsg-1 Downloading dependency 418 of 477: libgnutls-openssl27t64:arm64=3.8.11-3 Downloading dependency 419 of 477: xtrans-dev:arm64=1.6.0-1 Downloading dependency 420 of 477: libz3-4:arm64=4.13.3-1 Downloading dependency 421 of 477: libxcursor1:arm64=1:1.2.3-1 Downloading dependency 422 of 477: libgdbm-compat4t64:arm64=1.26-1 Downloading dependency 423 of 477: tar:arm64=1.35+dfsg-3.1 Downloading dependency 424 of 477: libxcb-icccm4:arm64=0.4.2-1 Downloading dependency 425 of 477: libdbus-1-3:arm64=1.16.2-2 Downloading dependency 426 of 477: pkgconf:arm64=1.8.1-4 Downloading dependency 427 of 477: libctf-nobfd0:arm64=2.45.50.20251209-1 Downloading dependency 428 of 477: libfile-stripnondeterminism-perl:arm64=1.15.0-1 Downloading dependency 429 of 477: libglx-mesa0:arm64=25.2.8-2+b2 Downloading dependency 430 of 477: cpp-aarch64-linux-gnu:arm64=4:15.2.0-4 Downloading dependency 431 of 477: autopoint:arm64=0.23.2-1 Downloading dependency 432 of 477: libx11-dev:arm64=2:1.8.12-1 Downloading dependency 433 of 477: libwmflite-0.2-7:arm64=0.2.13-2 Downloading dependency 434 of 477: libnghttp2-14:arm64=1.64.0-1.1+b1 Downloading dependency 435 of 477: bash:arm64=5.3-1 Downloading dependency 436 of 477: libxft2:arm64=2.3.6-1+b4 Downloading dependency 437 of 477: liblzma-dev:arm64=5.8.1-2 Downloading dependency 438 of 477: libavahi-common-data:arm64=0.8-17 Downloading dependency 439 of 477: libvorbisenc2:arm64=1.3.7-3 Downloading dependency 440 of 477: libogg0:arm64=1.3.6-2 Downloading dependency 441 of 477: libxkbcommon-x11-0:arm64=1.12.3-1 Downloading dependency 442 of 477: libqt6dbus6:arm64=6.9.2+dfsg-3 Downloading dependency 443 of 477: libmpg123-0t64:arm64=1.33.3-1 Downloading dependency 444 of 477: libcap2:arm64=1:2.75-10+b2 Downloading dependency 445 of 477: libpam-runtime:arm64=1.7.0-5 Downloading dependency 446 of 477: libkrb5-3:arm64=1.22.1-2 Downloading dependency 447 of 477: libmd4c0:arm64=0.5.2-2+b1 Downloading dependency 448 of 477: libgcc-15-dev:arm64=15.2.0-11 Downloading dependency 449 of 477: libfftw3-dev:arm64=3.3.10-2+b1 Downloading dependency 450 of 477: libnghttp3-9:arm64=1.12.0-1 Downloading dependency 451 of 477: xkb-data:arm64=2.46-1 Downloading dependency 452 of 477: octave:arm64=10.3.0-3 Downloading dependency 453 of 477: gcc-aarch64-linux-gnu:arm64=4:15.2.0-4 Downloading dependency 454 of 477: libxfixes3:arm64=1:6.0.0-2+b4 Downloading dependency 455 of 477: libopenjp2-7:arm64=2.5.3-2.1 Downloading dependency 456 of 477: libgnutls28-dev:arm64=3.8.11-3 Downloading dependency 457 of 477: libxcb-dri3-0:arm64=1.17.0-2+b1 Downloading dependency 458 of 477: m4:arm64=1.4.20-2 Downloading dependency 459 of 477: libpam-modules:arm64=1.7.0-5 Downloading dependency 460 of 477: libqt5xml5t64:arm64=5.15.17+dfsg-5 Downloading dependency 461 of 477: libxml2-16:arm64=2.15.1+dfsg-2+b1 Downloading dependency 462 of 477: libldap2:arm64=2.6.10+dfsg-1 Downloading dependency 463 of 477: libvorbis0a:arm64=1.3.7-3 Downloading dependency 464 of 477: linux-libc-dev:arm64=6.17.11-1 Downloading dependency 465 of 477: libc-dev-bin:arm64=2.42-6 Downloading dependency 466 of 477: libnghttp3-dev:arm64=1.12.0-1 Downloading dependency 467 of 477: libqt5widgets5t64:arm64=5.15.17+dfsg-5 Downloading dependency 468 of 477: libduktape207:arm64=2.7.0-2+b2 Downloading dependency 469 of 477: libdrm-amdgpu1:arm64=2.4.129-1 Downloading dependency 470 of 477: libde265-0:arm64=1.0.16-1+b1 Downloading dependency 471 of 477: libc6-dev:arm64=2.42-6 Downloading dependency 472 of 477: libtiff-dev:arm64=4.7.1-1 Downloading dependency 473 of 477: libglu1-mesa:arm64=9.0.2-1.1+b3 Downloading dependency 474 of 477: libgssapi-krb5-2:arm64=1.22.1-2 Downloading dependency 475 of 477: sysvinit-utils:arm64=3.15-6 Downloading dependency 476 of 477: libqt5gui5t64:arm64=5.15.17+dfsg-5 Downloading dependency 477 of 477: libhdf5-dev:arm64=1.14.5+repack-4 env --chdir=/srv/rebuilderd/tmp/rebuilderdMa7NOy/out DEB_BUILD_OPTIONS=parallel=8 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1765979088 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuild2zPiuI/debrebuild.sbuildrc.LxIlYywnsyjS sbuild --build=arm64 --host=arm64 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuild2zPiuI/debrebuild.tar._eO2jalFg7uT --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=mrtrix3-3.0.8 /srv/rebuilderd/tmp/rebuilderdMa7NOy/inputs/mrtrix3_3.0.8-1.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on codethink02-arm64 +==============================================================================+ | mrtrix3 3.0.8-1 (arm64) Wed, 11 Mar 2026 05:38:30 +0000 | +==============================================================================+ Package: mrtrix3 Version: 3.0.8-1 Source Version: 3.0.8-1 Distribution: unstable Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuild2zPiuI/debrebuild.tar._eO2jalFg7uT to /srv/rebuilderd/tmp/tmp.sbuild.vrizKdkY5N... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Wed, 11 Mar 2026 05:38:41 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdMa7NOy/inputs/mrtrix3_3.0.8-1.dsc exists in /srv/rebuilderd/tmp/rebuilderdMa7NOy/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Wed, 11 Mar 2026 05:38:43 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, octave-dev, libgsl-dev, libeigen3-dev, libqt5opengl5-dev, qtbase5-dev, libqt5svg5-dev, python3, pkgconf, imagemagick, libtiff-dev, matlab-support-dev, bc, build-essential Merged Build-Conflicts: clang Filtered Build-Depends: debhelper-compat (= 13), dh-python, octave-dev, libgsl-dev, libeigen3-dev, libqt5opengl5-dev, qtbase5-dev, libqt5svg5-dev, python3, pkgconf, imagemagick, libtiff-dev, matlab-support-dev, bc, build-essential Filtered Build-Conflicts: clang dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-7AaImr/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Wed, 11 Mar 2026 05:38:49 +0000 | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any-amd64 arm64 all) +------------------------------------------------------------------------------+ | Build environment Wed, 11 Mar 2026 05:38:50 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.73+deb13-cloud-arm64 #1 SMP Debian 6.12.73-1 (2026-02-17) arm64 (aarch64) Toolchain package versions: binutils_2.45.50.20251209-1 dpkg-dev_1.22.21 g++-15_15.2.0-11 gcc-15_15.2.0-11 libc6-dev_2.42-6 libstdc++-15-dev_15.2.0-11 libstdc++6_15.2.0-11 linux-libc-dev_6.17.11-1 Package versions: autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-1 bc_1.07.1-4+b1 binutils_2.45.50.20251209-1 binutils-aarch64-linux-gnu_2.45.50.20251209-1 binutils-common_2.45.50.20251209-1 bsdextrautils_2.41.3-1 build-essential_12.12 bzip2_1.0.8-6 comerr-dev_2.1-1.47.2-3+b4 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-11 cpp-15-aarch64-linux-gnu_15.2.0-11 cpp-aarch64-linux-gnu_4:15.2.0-4 dash_0.5.12-12 debconf_1.5.91 debhelper_13.29 debianutils_5.23.2 dh-autoreconf_21 dh-python_6.20251204.1 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 file_1:5.46-5 findutils_4.10.0-3 fontconfig_2.15.0-2.4 fontconfig-config_2.15.0-2.4 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:15.2.0-4 g++-15_15.2.0-11 g++-15-aarch64-linux-gnu_15.2.0-11 g++-aarch64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-11 gcc-15-aarch64-linux-gnu_15.2.0-11 gcc-15-base_15.2.0-11 gcc-aarch64-linux-gnu_4:15.2.0-4 gettext_0.23.2-1 gettext-base_0.23.2-1 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qtbase5-dev_5.15.17+dfsg-5 qtbase5-dev-tools_5.15.17+dfsg-5 qtchooser_66-2+b1 readline-common_8.3-3 rpcsvc-proto_1.4.3-1+b1 sed_4.9-2+b1 sensible-utils_0.0.26 shared-mime-info_2.4-5+b3 sysvinit-utils_3.15-6 tar_1.35+dfsg-3.1 tex-common_6.20 texinfo_7.2-5 texinfo-lib_7.2-5 tzdata_2025c-2 ucf_3.0052 util-linux_2.41.3-1 x11-common_1:7.7+26 x11proto-dev_2024.1-1 xkb-data_2.46-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.6.0-1 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b2 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b2 +------------------------------------------------------------------------------+ | Build Wed, 11 Mar 2026 05:38:50 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mrtrix3 Binary: mrtrix3, mrtrix3-doc Architecture: any-amd64 arm64 all Version: 3.0.8-1 Maintainer: Debian Med Packaging Team Uploaders: Michael Hanke , Yaroslav Halchenko , Étienne Mollier Homepage: https://www.mrtrix.org Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/mrtrix3 Vcs-Git: https://salsa.debian.org/med-team/mrtrix3.git Build-Depends: debhelper-compat (= 13), dh-python, octave-dev, libgsl-dev, libeigen3-dev, libqt5opengl5-dev, qtbase5-dev, libqt5svg5-dev, python3, pkgconf, imagemagick, libtiff-dev, matlab-support-dev, bc Build-Conflicts: clang Package-List: mrtrix3 deb science optional arch=any-amd64,arm64 mrtrix3-doc deb doc optional arch=all Checksums-Sha1: 3d12cda10cacf20ac6905ed544e910d82d36af69 4057854 mrtrix3_3.0.8.orig.tar.gz 179202b5a97bd32071b3f8b1014780ceb5a4aceb 10320 mrtrix3_3.0.8-1.debian.tar.xz Checksums-Sha256: 7ca0ec513fe32421f453b8bdc5a7355a4563fd0247eea92fd5998ebd81a988aa 4057854 mrtrix3_3.0.8.orig.tar.gz 68a990486617c74f6e8bace10283308be390db8eb90015b4d9ce31d8e1b146e1 10320 mrtrix3_3.0.8-1.debian.tar.xz Files: 9485a0aa0f771b1aab64630597a2691f 4057854 mrtrix3_3.0.8.orig.tar.gz d89c2b77912735dbdbabaeb9210311da 10320 mrtrix3_3.0.8-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmlCuIAOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtEdKw/+PlBT1rtKD+XpYcQolX17Q2KbJdJz6/jYg3UC eszWReYhPW8Fcl540IAG9en2Kw77tDiF/y8zoNbU4Yje6XDRZmHC6LnZo8L7W03o HlvaFDk8LhNGCJ7igksDiDvt9yxxIsgg/Edlq+CFLNXJjn2JP6aAyX28id5tYdTB r8m8QqTgYh5okZEAkXr9ydZbPXdxW8gZj7QVWyfY9ue3jqGQCawhnvrz/Nn2Re7t L2fb/l/FhnGMpKO8N0BhDe2jrobKNNdqtH7olsHKPqVE8QGfPfNBu4vlBvSgGfDX huGQnRBdnqZyiFqpge2velCPJ8CxujojeZeRoiZ0xcYpb2qWWzYaSvH7ROlQhe1g y8b93JsezVjr8nIMeMZ0cXADmDPlNKD/GkRQXDcPuSrSIL+YsepEoxfbNSuKu8SI gRqNPMFx3owD3HjWIE8kEq/5n8lHEJHzoYjjSigVy+nugXCcchavN/gGMpdA6rF3 yIMj3KpxUTkQV2IZ7+J1djROqngRWd3ce+UFmxb97mh6kSAfHvYRrJLDRc2VeGYY vt7aMkoy3R282sfgyDbK09sNIBVX49BaDp1A5kIsrY1I+o/1/0OXa6QB2LTuDXQu W/ItN9Ra85sJBrJLxCjMaQh88w0IFyBNz2YdTFnEHtm30hrrO0PeWWv0lMm+LzFL DlCENlY= =fuD0 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./mrtrix3_3.0.8-1.dsc: unsupported subcommand dpkg-source: info: extracting mrtrix3 in /build/reproducible-path/mrtrix3-3.0.8 dpkg-source: info: unpacking mrtrix3_3.0.8.orig.tar.gz dpkg-source: info: unpacking mrtrix3_3.0.8-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian_build_cfg dpkg-source: info: applying python3.patch dpkg-source: info: applying mrtrix_version.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1765979088 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package mrtrix3 dpkg-buildpackage: info: source version 3.0.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.8' [ -f config ] && python3 ./build clean || true find . -name '*.pyc' -delete rm clean \ config configure.log build.log \ core/version.cpp lib/mrtrix3/_version.py src/exec_version.cpp \ icons/mrview.qrc icons/shview.qrc rm: cannot remove 'clean': No such file or directory rm: cannot remove 'config': No such file or directory rm: cannot remove 'configure.log': No such file or directory rm: cannot remove 'build.log': No such file or directory rm: cannot remove 'core/version.cpp': No such file or directory rm: cannot remove 'lib/mrtrix3/_version.py': No such file or directory rm: cannot remove 'src/exec_version.cpp': No such file or directory rm: cannot remove 'icons/mrview.qrc': No such file or directory rm: cannot remove 'icons/shview.qrc': No such file or directory make[1]: [debian/rules:76: override_dh_clean] Error 1 (ignored) dh_clean make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.8' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.8' ./configure -openmp # -debug MRtrix build type requested: release version with openmp Detecting OS: linux Looking for compiler [clang++]: not found Looking for compiler [g++]: g++ (Debian 15.2.0-11) 15.2.0 Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.4.0 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.3.1 Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.7.1 Checking for PNG library: not found - PNG support disabled Checking for FFTW library: fftw-3.3.10 Checking for OpenMP support: ok Checking for Qt moc: moc (version 5.15.17) Checking for Qt qmake: qmake (version 5.15.17) Checking for Qt rcc: rcc (version 5.15.17) Checking for Qt: 5.15.17 writing configuration to file './config': ok make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.8' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.8' ./build -verbose active config is default reading configuration from "config"... is_likely_text: bin/5ttgen: starts with shebang is_likely_text: bin/blend: starts with shebang is_likely_text: bin/convert_bruker: starts with shebang is_likely_text: bin/dwi2response: starts with shebang is_likely_text: bin/dwibiascorrect: starts with shebang is_likely_text: bin/dwicat: starts with shebang is_likely_text: bin/dwifslpreproc: starts with shebang is_likely_text: bin/dwigradcheck: starts with shebang is_likely_text: bin/dwinormalise: starts with shebang is_likely_text: bin/dwishellmath: starts with shebang is_likely_text: bin/for_each: starts with shebang is_likely_text: bin/gen_scheme: starts with shebang is_likely_text: bin/labelsgmfix: starts with shebang is_likely_text: bin/mrtrix3.py: utf-8 encoded is_likely_text: bin/mrtrix_cleanup: starts with shebang is_likely_text: bin/notfound: starts with shebang is_likely_text: bin/population_template: starts with shebang is_likely_text: bin/responsemean: starts with shebang getting MRtrix version from folder "."... fetching version information from "MRTRIX_BASE_VERSION" in "./core/version.h": 3.0.8 Using MRtrix version "3.0.8" version file "./core/version.cpp" is out of date - updating version file "./src/exec_version.cpp" is out of date - updating compiling TODO list... building targets: bin/mrtransform bin/mrdump bin/tck2connectome bin/tckconvert bin/dcmedit bin/mrinfo bin/tckdfc bin/transformconvert bin/tcktransform bin/sh2amp bin/voxel2mesh bin/tckresample bin/mrhistmatch bin/tck2fixel bin/mrview bin/mrclusterstats bin/fixelcrop bin/fixelreorient bin/dirmerge bin/peaks2amp bin/5ttedit bin/warp2metric bin/dirflip bin/mrdegibbs bin/tckedit bin/shbasis bin/warpcorrect bin/fixelcfestats bin/mredit bin/vectorstats bin/5ttcheck bin/dwi2tensor bin/maskdump bin/transformcompose bin/maskfilter bin/amp2sh bin/5tt2vis bin/mrcalc bin/connectomeedit bin/mrconvert bin/mrregister bin/fixelfilter bin/sh2peaks bin/mtnormalise bin/mrcheckerboardmask bin/mrstats bin/fixelconvert bin/tckstats bin/mrcat bin/mrmetric bin/sh2power bin/dirgen bin/shconv bin/mrcentroid bin/label2colour bin/warpinit bin/tckglobal bin/connectomestats bin/tcksample bin/mrcolour bin/dwi2adc bin/dcminfo bin/mrhistogram bin/connectome2tck bin/transformcalc bin/fod2fixel bin/label2mesh bin/mraverageheader bin/tckmap bin/tckinfo bin/labelconvert bin/peaks2fixel bin/amp2response bin/warpconvert bin/5tt2gmwmi bin/tcksift bin/fixel2peaks bin/mrfilter bin/dirstat bin/mrthreshold bin/mrgrid bin/fixel2tsf bin/tensor2metric bin/tsfvalidate bin/dwiextract bin/mesh2voxel bin/labelstats bin/tsfthreshold bin/fixel2sh bin/warpinvert bin/tcksift2 bin/tsfinfo bin/dwi2mask bin/fixelcorrespondence bin/tsfmult bin/mrmath bin/shview bin/meshconvert bin/tckgen bin/tsfsmooth bin/fixel2voxel bin/voxel2fixel bin/fixelconnectivity bin/fod2dec bin/tsfdivide bin/meshfilter bin/dwidenoise bin/dirorder bin/dwi2fod bin/afdconnectivity bin/sh2response bin/dirsplit TODO list contains 548 items Build will use 12 threads ( 1/548) [CC] tmp/cmd/mrtransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o ( 2/548) [CC] tmp/core/image_io/mosaic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/mosaic.cpp -o tmp/core/image_io/mosaic.o ( 3/548) [CC] tmp/core/version.o ( 4/548) [CC] tmp/core/math/erfinv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/erfinv.cpp -o tmp/core/math/erfinv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/version.cpp -o tmp/core/version.o ( 5/548) [CC] tmp/core/image_io/fetch_store.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/fetch_store.cpp -o tmp/core/image_io/fetch_store.o ( 6/548) [CC] tmp/core/formats/nifti2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti2.cpp -o tmp/core/formats/nifti2.o ( 7/548) [CC] tmp/core/file/dicom/tree.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/tree.cpp -o tmp/core/file/dicom/tree.o ( 8/548) [CC] tmp/core/formats/mrtrix_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix_gz.cpp -o tmp/core/formats/mrtrix_gz.o ( 9/548) [CC] tmp/core/image_io/sparse.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/sparse.cpp -o tmp/core/image_io/sparse.o ( 10/548) [CC] tmp/core/file/mmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/mmap.cpp -o tmp/core/file/mmap.o ( 11/548) [CC] tmp/core/formats/pipe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/pipe.cpp -o tmp/core/formats/pipe.o ( 12/548) [CC] tmp/core/mrtrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/mrtrix.cpp -o tmp/core/mrtrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/version.cpp -o tmp/core/version.o: core/version.cpp:5:30: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 5 | const char* build_date = __DATE__; | ^~~~~~~~ ( 13/548) [CC] tmp/core/formats/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mgh.cpp -o tmp/core/formats/mgh.o ( 14/548) [CC] tmp/core/file/dicom/select_cmdline.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/select_cmdline.cpp -o tmp/core/file/dicom/select_cmdline.o ( 15/548) [CC] tmp/core/math/SH.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem 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-ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/config.cpp -o tmp/core/file/config.o ( 69/548) [CC] tmp/core/file/dicom/image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/image.cpp -o tmp/core/file/dicom/image.o ( 70/548) [CC] tmp/core/formats/nifti1_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti1_gz.cpp -o tmp/core/formats/nifti1_gz.o ( 71/548) [CC] tmp/core/adapter/reslice.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/adapter/reslice.cpp -o tmp/core/adapter/reslice.o ( 72/548) [CC] tmp/core/image_io/default.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/default.cpp -o tmp/core/image_io/default.o ( 73/548) [CC] tmp/core/formats/ram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/ram.cpp -o tmp/core/formats/ram.o ( 74/548) [CC] tmp/core/file/dicom/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/mapper.cpp -o tmp/core/file/dicom/mapper.o ( 75/548) [CC] tmp/core/formats/mgz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mgz.cpp -o tmp/core/formats/mgz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/json_utils.cpp -o tmp/core/file/json_utils.o: In file included from /usr/include/c++/15/bits/exception_ptr.h:41, from /usr/include/c++/15/exception:168, from /usr/include/c++/15/ios:43, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/fstream:42, from core/file/json_utils.cpp:17: In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12715:36: /usr/include/c++/15/bits/move.h:236:7: warning: ‘.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value’ may be used uninitialized [-Wmaybe-uninitialized] 236 | __a = _GLIBCXX_MOVE(__b); | ^~~ In file included from ./core/file/json_utils.h:20, from core/file/json_utils.cpp:20: ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12715:38: note: ‘’ declared here 12715 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12768:32: /usr/include/c++/15/bits/move.h:236:7: warning: ‘.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value’ may be used uninitialized [-Wmaybe-uninitialized] 236 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12768:34: note: ‘’ declared here 12768 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12792:36: /usr/include/c++/15/bits/move.h:236:7: warning: ‘.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value’ may be used uninitialized [-Wmaybe-uninitialized] 236 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12792:38: note: ‘’ declared here 12792 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12822:32: /usr/include/c++/15/bits/move.h:236:7: warning: ‘.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value’ may be used uninitialized [-Wmaybe-uninitialized] 236 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12822:34: note: ‘’ declared here 12822 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12897:24: /usr/include/c++/15/bits/move.h:236:7: warning: ‘.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value’ may be used uninitialized [-Wmaybe-uninitialized] 236 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12897:26: note: ‘’ declared here 12897 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ( 76/548) [CC] tmp/core/file/ofstream.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/ofstream.cpp -o tmp/core/file/ofstream.o ( 77/548) [CC] tmp/core/math/stats/fwe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/stats/fwe.cpp -o tmp/core/math/stats/fwe.o ( 78/548) [CC] tmp/core/formats/mrtrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix.cpp -o tmp/core/formats/mrtrix.o ( 79/548) [CC] tmp/core/math/betainc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/betainc.cpp -o tmp/core/math/betainc.o ( 80/548) [CC] tmp/core/file/dicom/patient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/patient.cpp -o tmp/core/file/dicom/patient.o ( 81/548) [CC] tmp/core/formats/xds.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/xds.cpp -o tmp/core/formats/xds.o ( 82/548) [CC] tmp/core/image_io/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/base.cpp -o tmp/core/image_io/base.o ( 83/548) [CC] tmp/core/exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/exception.cpp -o tmp/core/exception.o ( 84/548) [CC] tmp/core/metadata/bids.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/metadata/bids.cpp -o tmp/core/metadata/bids.o ( 85/548) [CC] tmp/src/exec_version.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/exec_version.cpp -o tmp/src/exec_version.o ( 86/548) [CC] tmp/src/registration/multi_contrast.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT 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-isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/twi_stats.cpp -o tmp/src/dwi/tractography/mapping/twi_stats.o (112/548) [CC] tmp/cmd/tckdfc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckdfc.cpp -o tmp/cmd/tckdfc.o (113/548) [CC] tmp/src/dwi/tractography/resampling/arc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/arc.cpp -o tmp/src/dwi/tractography/resampling/arc.o (114/548) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper_plugins.cpp -o tmp/src/dwi/tractography/mapping/mapper_plugins.o (115/548) [CC] tmp/src/dwi/tractography/mapping/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o (116/548) [CC] tmp/src/dwi/directions/set.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/set.cpp -o tmp/src/dwi/directions/set.o (117/548) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/fixed_num_points.cpp -o tmp/src/dwi/tractography/resampling/fixed_num_points.o (118/548) [CC] tmp/cmd/transformconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformconvert.cpp -o tmp/cmd/transformconvert.o (119/548) [CC] tmp/cmd/tcktransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcktransform.cpp -o tmp/cmd/tcktransform.o (120/548) [CC] tmp/src/dwi/directions/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o (121/548) [CC] tmp/cmd/sh2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2amp.cpp -o tmp/cmd/sh2amp.o (122/548) [CC] tmp/src/surface/freesurfer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o (123/548) [CC] tmp/src/surface/mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o (124/548) [CC] tmp/src/surface/scalar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/scalar.cpp -o tmp/src/surface/scalar.o (125/548) [CC] tmp/src/surface/polygon.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/polygon.cpp -o tmp/src/surface/polygon.o (126/548) [CC] tmp/cmd/voxel2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/voxel2mesh.cpp -o tmp/cmd/voxel2mesh.o (127/548) [CC] tmp/src/connectome/lut.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/lut.cpp -o tmp/src/connectome/lut.o (128/548) [CC] tmp/cmd/tckresample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckresample.cpp -o tmp/cmd/tckresample.o (129/548) [CC] tmp/cmd/mrhistmatch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o: In file included from /usr/include/eigen3/Eigen/src/Core/util/ConfigureVectorization.h:392, from /usr/include/eigen3/Eigen/Core:22, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckconvert.cpp:19: In function ‘float32x2_t vld1_f32(const float32_t*)’, inlined from ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = __Float32x2_t]’ at /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1710:45, inlined from ‘Packet Eigen::internal::ploadt(const typename unpacket_traits::type*) [with Packet = __Float32x2_t; int Alignment = 0]’ at /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:969:26, inlined from ‘PacketType Eigen::internal::evaluator >::packet(Eigen::Index, Eigen::Index) const [with int LoadMode = 0; PacketType = __Float32x2_t; Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:238:42, inlined from ‘PacketType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::packet(Eigen::Index, Eigen::Index) const [with int LoadMode = 0; PacketType = __Float32x2_t; UnaryOp = Eigen::internal::scalar_abs2_op; ArgType = const Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:596:81, inlined from ‘PacketType Eigen::internal::redux_evaluator<_XprType>::packetByOuterInner(Eigen::Index, Eigen::Index) const [with int LoadMode = 0; PacketType = __Float32x2_t; _XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:386:54, inlined from ‘static PacketType Eigen::internal::redux_vec_unroller::run(const Evaluator&, const Func&) [with PacketType = __Float32x2_t; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; int Start = 0]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:177:66, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:344:115, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘void Eigen::MatrixBase::normalize() [with Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:147:29, inlined from ‘void PLYWriter::computeNormals(const MR::DWI::Tractography::Streamline&, MR::DWI::Tractography::Streamline&)’ at cmd/tckconvert.cpp:411:23, inlined from ‘virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)’ at cmd/tckconvert.cpp:485:27: /usr/lib/gcc/aarch64-linux-gnu/15/include/arm_neon.h:11978:36: warning: ‘*(__Float32x2_t*)((char*)&normal + offsetof(Eigen::Vector3f, Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[0]))’ may be used uninitialized [-Wmaybe-uninitialized] 11978 | return __builtin_aarch64_ld1v2sf ((const __builtin_aarch64_simd_sf *) __a); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cmd/tckconvert.cpp: In member function ‘virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)’: cmd/tckconvert.cpp:396:50: note: ‘normal’ declared here 396 | Eigen::Vector3f sPrev, sNext, pt1, pt2, n, normal; | ^~~~~~ (130/548) [CC] tmp/cmd/tck2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2fixel.cpp -o tmp/cmd/tck2fixel.o (131/548) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp moc src/gui/mrview/mode/lightbox.h -o tmp/src/gui/mrview/mode/lightbox_moc.cpp (132/548) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/lightbox_moc.cpp -o tmp/src/gui/mrview/mode/lightbox_moc.o (133/548) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/legacy.cpp -o tmp/src/gui/mrview/tool/fixel/legacy.o (134/548) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp moc src/gui/mrview/tool/odf/odf.h -o tmp/src/gui/mrview/tool/odf/odf_moc.cpp (135/548) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/odf_moc.cpp -o tmp/src/gui/mrview/tool/odf/odf_moc.o (136/548) [CC] tmp/src/gui/mrview/tool/odf/model.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/model.cpp -o tmp/src/gui/mrview/tool/odf/model.o (137/548) [MOC] tmp/src/gui/mrview/window_moc.cpp moc src/gui/mrview/window.h -o tmp/src/gui/mrview/window_moc.cpp (138/548) [CC] tmp/src/gui/mrview/window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/window_moc.cpp -o tmp/src/gui/mrview/window_moc.o (139/548) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp moc src/gui/dialog/image_properties.h -o tmp/src/gui/dialog/image_properties_moc.cpp (140/548) [CC] tmp/src/gui/dialog/image_properties_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/dialog/image_properties_moc.cpp -o tmp/src/gui/dialog/image_properties_moc.o (141/548) [CC] tmp/src/gui/mrview/displayable.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o (142/548) [CC] tmp/src/gui/projection.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/projection.cpp -o tmp/src/gui/projection.o (143/548) [CC] tmp/src/gui/dialog/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/file.cpp -o tmp/src/gui/dialog/file.o (144/548) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp moc src/gui/mrview/spin_box.h -o tmp/src/gui/mrview/spin_box_moc.cpp (145/548) [CC] tmp/src/gui/mrview/spin_box_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/spin_box_moc.cpp -o tmp/src/gui/mrview/spin_box_moc.o (146/548) [CC] tmp/src/gui/mrview/file_open.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/file_open.cpp -o tmp/src/gui/mrview/file_open.o (147/548) [CC] tmp/src/gui/dwi/renderer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/renderer.cpp -o tmp/src/gui/dwi/renderer.o (148/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o (149/548) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp moc src/gui/mrview/tool/connectome/selection.h -o tmp/src/gui/mrview/tool/connectome/selection_moc.cpp (150/548) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/selection_moc.cpp -o tmp/src/gui/mrview/tool/connectome/selection_moc.o (151/548) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o (152/548) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp moc src/gui/mrview/tool/connectome/node_list.h -o tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp (153/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp -o tmp/src/gui/mrview/tool/connectome/node_list_moc.o (154/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/track_scalar_file.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o (155/548) [CC] tmp/src/gui/mrview/tool/odf/odf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o (156/548) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp moc src/gui/mrview/tool/roi_editor/roi.h -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (157/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o (158/548) [CC] tmp/src/gui/opengl/shader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/shader.cpp -o tmp/src/gui/opengl/shader.o (159/548) [CC] tmp/src/gui/dialog/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/list.cpp -o tmp/src/gui/dialog/list.o (160/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o (161/548) [LD] lib/libmrtrix.so g++ tmp/core/image_io/mosaic.o tmp/core/version.o tmp/core/formats/nifti2.o tmp/core/image_io/fetch_store.o tmp/core/file/dicom/tree.o tmp/core/math/erfinv.o tmp/core/formats/mrtrix_gz.o tmp/core/image_io/sparse.o tmp/core/mrtrix.o tmp/core/formats/pipe.o tmp/core/file/mmap.o tmp/core/formats/mgh.o tmp/core/file/dicom/select_cmdline.o tmp/core/math/SH.o tmp/core/dwi/gradient.o tmp/core/math/stats/import.o tmp/core/image_io/pipe.o tmp/core/file/dicom/quick_scan.o tmp/core/stats.o tmp/core/formats/png.o tmp/core/app.o tmp/core/datatype.o tmp/core/formats/nifti2_gz.o tmp/core/file/tiff.o tmp/core/file/dicom/element.o tmp/core/formats/mri.o tmp/core/formats/nifti1.o tmp/core/thread.o tmp/core/file/dicom/study.o tmp/core/math/zstatistic.o tmp/core/file/key_value.o tmp/core/axes.o tmp/core/header.o tmp/core/image_io/scratch.o tmp/core/math/stats/shuffle.o tmp/core/file/name_parser.o tmp/core/formats/dicom.o tmp/core/formats/mrtrix_sparse_legacy.o tmp/core/image_io/gz.o tmp/core/formats/tiff.o tmp/core/file/dicom/series.o tmp/core/signal_handler.o tmp/core/metadata/phase_encoding.o tmp/core/image_io/null.o tmp/core/file/json_utils.o tmp/core/math/bessel.o tmp/core/file/dicom/dict.o tmp/core/algo/histogram.o tmp/core/metadata/slice_encoding.o tmp/core/formats/list.o tmp/core/file/mgh.o tmp/core/file/png.o tmp/core/image_io/png.o tmp/core/image_io/tiff.o tmp/core/misc/bitset.o tmp/core/progressbar.o tmp/core/math/stats/glm.o tmp/core/dwi/shells.o tmp/core/stride.o tmp/core/formats/mrtrix_utils.o tmp/core/image_io/ram.o tmp/core/math/average_space.o tmp/core/filter/connected_components.o tmp/core/image_io/variable_scaling.o tmp/core/formats/par.o tmp/core/file/nifti_utils.o tmp/core/file/config.o tmp/core/file/dicom/image.o tmp/core/formats/nifti1_gz.o tmp/core/adapter/reslice.o tmp/core/image_io/default.o tmp/core/formats/ram.o tmp/core/file/dicom/mapper.o tmp/core/formats/mgz.o tmp/core/file/ofstream.o tmp/core/math/stats/fwe.o tmp/core/formats/mrtrix.o tmp/core/math/betainc.o tmp/core/file/dicom/patient.o tmp/core/formats/xds.o tmp/core/image_io/base.o tmp/core/exception.o tmp/core/metadata/bids.o -shared -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -o lib/libmrtrix.so (162/548) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_overlay.cpp -o tmp/src/gui/mrview/tool/connectome/node_overlay.o (163/548) [CC] tmp/src/gui/mrview/combo_box_error.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/combo_box_error.cpp -o tmp/src/gui/mrview/combo_box_error.o (164/548) [CC] tmp/src/gui/mrview/tool/odf/preview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/preview.cpp -o tmp/src/gui/mrview/tool/odf/preview.o (165/548) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/file_data_vector.cpp -o tmp/src/gui/mrview/tool/connectome/file_data_vector.o (166/548) [CC] tmp/src/gui/dialog/image_properties.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/image_properties.cpp -o tmp/src/gui/dialog/image_properties.o g++ tmp/core/image_io/mosaic.o tmp/core/version.o tmp/core/formats/nifti2.o tmp/core/image_io/fetch_store.o tmp/core/file/dicom/tree.o tmp/core/math/erfinv.o tmp/core/formats/mrtrix_gz.o tmp/core/image_io/sparse.o tmp/core/mrtrix.o tmp/core/formats/pipe.o tmp/core/file/mmap.o tmp/core/formats/mgh.o tmp/core/file/dicom/select_cmdline.o tmp/core/math/SH.o tmp/core/dwi/gradient.o tmp/core/math/stats/import.o tmp/core/image_io/pipe.o tmp/core/file/dicom/quick_scan.o tmp/core/stats.o tmp/core/formats/png.o tmp/core/app.o tmp/core/datatype.o tmp/core/formats/nifti2_gz.o tmp/core/file/tiff.o tmp/core/file/dicom/element.o tmp/core/formats/mri.o tmp/core/formats/nifti1.o tmp/core/thread.o tmp/core/file/dicom/study.o tmp/core/math/zstatistic.o tmp/core/file/key_value.o tmp/core/axes.o tmp/core/header.o tmp/core/image_io/scratch.o tmp/core/math/stats/shuffle.o tmp/core/file/name_parser.o tmp/core/formats/dicom.o tmp/core/formats/mrtrix_sparse_legacy.o tmp/core/image_io/gz.o tmp/core/formats/tiff.o tmp/core/file/dicom/series.o tmp/core/signal_handler.o tmp/core/metadata/phase_encoding.o tmp/core/image_io/null.o tmp/core/file/json_utils.o tmp/core/math/bessel.o tmp/core/file/dicom/dict.o tmp/core/algo/histogram.o tmp/core/metadata/slice_encoding.o tmp/core/formats/list.o tmp/core/file/mgh.o tmp/core/file/png.o tmp/core/image_io/png.o tmp/core/image_io/tiff.o tmp/core/misc/bitset.o tmp/core/progressbar.o tmp/core/math/stats/glm.o tmp/core/dwi/shells.o tmp/core/stride.o tmp/core/formats/mrtrix_utils.o tmp/core/image_io/ram.o tmp/core/math/average_space.o tmp/core/filter/connected_components.o tmp/core/image_io/variable_scaling.o tmp/core/formats/par.o tmp/core/file/nifti_utils.o tmp/core/file/config.o tmp/core/file/dicom/image.o tmp/core/formats/nifti1_gz.o tmp/core/adapter/reslice.o tmp/core/image_io/default.o tmp/core/formats/ram.o tmp/core/file/dicom/mapper.o tmp/core/formats/mgz.o tmp/core/file/ofstream.o tmp/core/math/stats/fwe.o tmp/core/formats/mrtrix.o tmp/core/math/betainc.o tmp/core/file/dicom/patient.o tmp/core/formats/xds.o tmp/core/image_io/base.o tmp/core/exception.o tmp/core/metadata/bids.o -shared -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -o lib/libmrtrix.so: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (167/548) [LB] bin/mrdump g++ tmp/cmd/mrdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdump g++ tmp/cmd/mrdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdump: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (168/548) [LB] bin/tck2connectome g++ tmp/src/connectome/connectome.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/connectome/matrix.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/connectome/connectome.o tmp/cmd/tck2connectome.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/connectome/tck2nodes.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2connectome (169/548) [LB] bin/tckconvert g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/tckconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckconvert g++ tmp/src/connectome/connectome.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/connectome/matrix.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/connectome/connectome.o tmp/cmd/tck2connectome.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/connectome/tck2nodes.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2connectome: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (170/548) [LB] bin/dcmedit g++ tmp/cmd/dcmedit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcmedit g++ tmp/cmd/dcmedit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcmedit: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (171/548) [LB] bin/mrinfo g++ tmp/cmd/mrinfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrinfo g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/tckconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckconvert: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (172/548) [LB] bin/tckdfc g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/cmd/tckdfc.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckdfc (173/548) [LB] bin/transformconvert g++ tmp/cmd/transformconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformconvert g++ tmp/cmd/mrinfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrinfo: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (174/548) [LB] bin/tcktransform g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/tcktransform.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcktransform g++ tmp/cmd/transformconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformconvert: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (175/548) [LB] bin/sh2amp g++ tmp/src/dwi/directions/file.o tmp/cmd/sh2amp.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2amp g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/tcktransform.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcktransform: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (176/548) [LB] bin/voxel2mesh g++ tmp/src/connectome/connectome.o tmp/src/surface/freesurfer.o tmp/src/surface/mesh.o tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/polygon.o tmp/cmd/voxel2mesh.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2mesh g++ tmp/src/dwi/directions/file.o tmp/cmd/sh2amp.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2amp: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (177/548) [LB] bin/tckresample g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/cmd/tckresample.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/fixed_step_size.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckresample g++ tmp/src/connectome/connectome.o tmp/src/surface/freesurfer.o tmp/src/surface/mesh.o tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/polygon.o tmp/cmd/voxel2mesh.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2mesh: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (178/548) [LB] bin/mrhistmatch g++ tmp/src/exec_version.o tmp/cmd/mrhistmatch.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistmatch g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/cmd/tckdfc.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckdfc: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (179/548) [LB] bin/tck2fixel g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/cmd/tck2fixel.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2fixel g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/cmd/tckresample.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/fixed_step_size.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckresample: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (180/548) [CC] tmp/src/gui/dialog/opengl.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/opengl.cpp -o tmp/src/gui/dialog/opengl.o g++ tmp/src/exec_version.o tmp/cmd/mrhistmatch.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistmatch: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (181/548) [CC] tmp/src/gui/mrview/tool/connectome/node.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node.cpp -o tmp/src/gui/mrview/tool/connectome/node.o g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/cmd/tck2fixel.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2fixel: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (182/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp moc src/gui/mrview/tool/tractography/tractogram.h -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp (183/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o (184/548) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp moc src/gui/mrview/colourmap_button.h -o tmp/src/gui/mrview/colourmap_button_moc.cpp (185/548) [CC] tmp/src/gui/mrview/colourmap_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/colourmap_button_moc.cpp -o tmp/src/gui/mrview/colourmap_button_moc.o (186/548) [CC] tmp/src/gui/mrview/gui_image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/gui_image.cpp -o tmp/src/gui/mrview/gui_image.o (187/548) [CC] tmp/src/gui/dialog/dialog.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/dialog.cpp -o tmp/src/gui/dialog/dialog.o (188/548) [CC] tmp/src/gui/mrview/tool/connectome/selection.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/selection.cpp -o tmp/src/gui/mrview/tool/connectome/selection.o (189/548) [CC] tmp/cmd/mrview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ cmd/mrview.cpp -o tmp/cmd/mrview.o (190/548) [CC] tmp/src/gui/mrview/volume.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o (191/548) [CC] tmp/src/gui/dwi/render_frame.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/render_frame.cpp -o tmp/src/gui/dwi/render_frame.o (192/548) [CC] tmp/src/gui/mrview/tool/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o (193/548) [CC] tmp/src/gui/opengl/gl_core_3_3.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/gl_core_3_3.cpp -o tmp/src/gui/opengl/gl_core_3_3.o (194/548) [MOC] tmp/src/gui/opengl/lighting_moc.cpp moc src/gui/opengl/lighting.h -o tmp/src/gui/opengl/lighting_moc.cpp (195/548) [CC] tmp/src/gui/opengl/lighting_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/opengl/lighting_moc.cpp -o tmp/src/gui/opengl/lighting_moc.o (196/548) [CC] tmp/src/gui/mrview/tool/transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/transform.cpp -o tmp/src/gui/mrview/tool/transform.o (197/548) [CC] tmp/src/gui/shapes/sphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/sphere.cpp -o tmp/src/gui/shapes/sphere.o (198/548) [CC] tmp/src/gui/mrview/mode/ortho.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/ortho.cpp -o tmp/src/gui/mrview/mode/ortho.o (199/548) [CC] tmp/src/gui/mrview/sync/client.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/client.cpp -o tmp/src/gui/mrview/sync/client.o (200/548) [CC] tmp/src/gui/cursor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/cursor.cpp -o tmp/src/gui/cursor.o (201/548) [MOC] tmp/src/gui/mrview/displayable_moc.cpp moc src/gui/mrview/displayable.h -o tmp/src/gui/mrview/displayable_moc.cpp (202/548) [CC] tmp/src/gui/mrview/displayable_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/displayable_moc.cpp -o tmp/src/gui/mrview/displayable_moc.o (203/548) [MOC] tmp/src/gui/mrview/tool/transform_moc.cpp moc src/gui/mrview/tool/transform.h -o tmp/src/gui/mrview/tool/transform_moc.cpp (204/548) [CC] tmp/src/gui/mrview/tool/transform_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/transform_moc.cpp -o tmp/src/gui/mrview/tool/transform_moc.o (205/548) [CC] tmp/src/gui/mrview/window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o (206/548) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o (207/548) [CC] tmp/src/gui/shapes/halfsphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/halfsphere.cpp -o tmp/src/gui/shapes/halfsphere.o (208/548) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp moc src/gui/mrview/tool/screen_capture.h -o tmp/src/gui/mrview/tool/screen_capture_moc.cpp (209/548) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o (210/548) [CC] tmp/src/gui/opengl/gl.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/gl.cpp -o tmp/src/gui/opengl/gl.o (211/548) [CC] tmp/src/gui/mrview/tool/connectome/edge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/edge.cpp -o tmp/src/gui/mrview/tool/connectome/edge.o (212/548) [CC] tmp/src/gui/color_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/color_button.cpp -o tmp/src/gui/color_button.o (213/548) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp moc src/gui/mrview/combo_box_error.h -o tmp/src/gui/mrview/combo_box_error_moc.cpp (214/548) [CC] tmp/src/gui/mrview/combo_box_error_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/combo_box_error_moc.cpp -o tmp/src/gui/mrview/combo_box_error_moc.o (215/548) [MOC] tmp/src/gui/mrview/sync/syncmanager_moc.cpp moc src/gui/mrview/sync/syncmanager.h -o tmp/src/gui/mrview/sync/syncmanager_moc.cpp (216/548) [CC] tmp/src/gui/mrview/sync/syncmanager_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/syncmanager_moc.cpp -o tmp/src/gui/mrview/sync/syncmanager_moc.o (217/548) [CC] tmp/src/gui/opengl/lighting.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/lighting.cpp -o tmp/src/gui/opengl/lighting.o (218/548) [CC] tmp/src/gui/mrview/mode/volume.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o (219/548) [CC] tmp/src/gui/shapes/cube.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/cube.cpp -o tmp/src/gui/shapes/cube.o (220/548) [CC] tmp/src/gui/dialog/report_exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/report_exception.cpp -o tmp/src/gui/dialog/report_exception.o (221/548) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp moc src/gui/mrview/tool/overlay.h -o tmp/src/gui/mrview/tool/overlay_moc.cpp (222/548) [CC] tmp/src/gui/mrview/tool/overlay_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/overlay_moc.cpp -o tmp/src/gui/mrview/tool/overlay_moc.o (223/548) [CC] tmp/src/surface/mesh_multi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o (224/548) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp moc src/gui/dwi/render_frame.h -o tmp/src/gui/dwi/render_frame_moc.cpp (225/548) [CC] tmp/src/gui/dwi/render_frame_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/dwi/render_frame_moc.cpp -o tmp/src/gui/dwi/render_frame_moc.o (226/548) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp moc src/gui/mrview/tool/tractography/track_scalar_file.h -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp (227/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o (228/548) [CC] tmp/src/gui/gui.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/gui.cpp -o tmp/src/gui/gui.o (229/548) [MOC] tmp/src/gui/lighting_dock_moc.cpp moc src/gui/lighting_dock.h -o tmp/src/gui/lighting_dock_moc.cpp (230/548) [CC] tmp/src/gui/lighting_dock_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/lighting_dock_moc.cpp -o tmp/src/gui/lighting_dock_moc.o (231/548) [MOC] tmp/src/gui/mrview/sync/localsocketreader_moc.cpp moc src/gui/mrview/sync/localsocketreader.h -o tmp/src/gui/mrview/sync/localsocketreader_moc.cpp (232/548) [CC] tmp/src/gui/mrview/sync/localsocketreader_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/localsocketreader_moc.cpp -o tmp/src/gui/mrview/sync/localsocketreader_moc.o (233/548) [CC] tmp/src/gui/mrview/sync/syncmanager.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/syncmanager.cpp -o tmp/src/gui/mrview/sync/syncmanager.o (234/548) [LB] bin/mrtransform g++ tmp/src/registration/multi_contrast.o tmp/cmd/mrtransform.o tmp/src/dwi/directions/predefined.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrtransform (235/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp moc src/gui/mrview/tool/tractography/tractography.h -o tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp (236/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractography_moc.o g++ tmp/src/registration/multi_contrast.o tmp/cmd/mrtransform.o tmp/src/dwi/directions/predefined.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrtransform: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (237/548) [CC] tmp/src/gui/shapes/cylinder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/cylinder.cpp -o tmp/src/gui/shapes/cylinder.o (238/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/interprocesscommunicator.cpp -o tmp/src/gui/mrview/sync/interprocesscommunicator.o (239/548) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/colourmap_observers.cpp -o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o (240/548) [CC] tmp/src/gui/mrview/tool/overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o (241/548) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp moc src/gui/mrview/tool/fixel/fixel.h -o tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (242/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -o tmp/src/gui/mrview/tool/fixel/fixel_moc.o (243/548) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/image4D.cpp -o tmp/src/gui/mrview/tool/fixel/image4D.o (244/548) [CC] tmp/src/gui/mrview/tool/odf/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o (245/548) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/undoentry.cpp -o tmp/src/gui/mrview/tool/roi_editor/undoentry.o (246/548) [CC] tmp/src/colourmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/colourmap.cpp -o tmp/src/colourmap.o (247/548) [CC] tmp/src/gui/mrview/sync/localsocketreader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/localsocketreader.cpp -o tmp/src/gui/mrview/sync/localsocketreader.o (248/548) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o (249/548) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/model.cpp -o tmp/src/gui/mrview/tool/roi_editor/model.o (250/548) [CC] tmp/src/gui/lighting_dock.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/lighting_dock.cpp -o tmp/src/gui/lighting_dock.o (251/548) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/base_fixel.cpp -o tmp/src/gui/mrview/tool/fixel/base_fixel.o (252/548) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp moc src/gui/mrview/tool/odf/preview.h -o tmp/src/gui/mrview/tool/odf/preview_moc.cpp (253/548) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/preview_moc.cpp -o tmp/src/gui/mrview/tool/odf/preview_moc.o (254/548) [CC] tmp/src/gui/dialog/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/dicom.cpp -o tmp/src/gui/dialog/dicom.o (255/548) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp moc src/gui/mrview/adjust_button.h -o tmp/src/gui/mrview/adjust_button_moc.cpp (256/548) [CC] tmp/src/gui/mrview/adjust_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/adjust_button_moc.cpp -o tmp/src/gui/mrview/adjust_button_moc.o (257/548) [CC] tmp/src/gui/crosshair.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/crosshair.cpp -o tmp/src/gui/crosshair.o (258/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o (259/548) [CC] tmp/src/gui/mrview/sync/processlock.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/processlock.cpp -o tmp/src/gui/mrview/sync/processlock.o (260/548) [CC] tmp/src/gui/mrview/colourbars.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourbars.cpp -o tmp/src/gui/mrview/colourbars.o (261/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o (262/548) [CC] tmp/src/gui/mrview/tool/view.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/view.cpp -o tmp/src/gui/mrview/tool/view.o (263/548) [CC] tmp/src/gui/opengl/font.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/font.cpp -o tmp/src/gui/opengl/font.o (264/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/roi.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi.o (265/548) [MOC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp moc src/gui/mrview/sync/interprocesscommunicator.h -o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp (266/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp -o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o (267/548) [CC] tmp/src/gui/mrview/adjust_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/adjust_button.cpp -o tmp/src/gui/mrview/adjust_button.o (268/548) [CC] tmp/src/gui/mrview/tool/screen_capture.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o (269/548) [CC] tmp/src/gui/mrview/tool/fixel/directory.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o (270/548) [MOC] tmp/src/gui/color_button_moc.cpp moc src/gui/color_button.h -o tmp/src/gui/color_button_moc.cpp (271/548) [CC] tmp/src/gui/color_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/color_button_moc.cpp -o tmp/src/gui/color_button_moc.o (272/548) [CC] tmp/src/gui/dialog/progress.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/progress.cpp -o tmp/src/gui/dialog/progress.o (273/548) [CC] tmp/src/gui/mrview/mode/slice.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/slice.cpp -o tmp/src/gui/mrview/mode/slice.o (274/548) [CC] tmp/src/gui/mrview/mode/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/base.cpp -o tmp/src/gui/mrview/mode/base.o (275/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractogram.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram.o (276/548) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp moc src/gui/mrview/mode/ortho.h -o tmp/src/gui/mrview/mode/ortho_moc.cpp (277/548) [CC] tmp/src/gui/mrview/mode/ortho_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/ortho_moc.cpp -o tmp/src/gui/mrview/mode/ortho_moc.o (278/548) [RCC] tmp/src/gui/mrview/icons.cpp rcc icons/mrview.qrc -o tmp/src/gui/mrview/icons.cpp (279/548) [CC] tmp/src/gui/mrview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/icons.cpp -o tmp/src/gui/mrview/icons.o (280/548) [CC] tmp/src/gui/mrview/colourmap_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourmap_button.cpp -o tmp/src/gui/mrview/colourmap_button.o (281/548) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp moc src/gui/mrview/tool/connectome/connectome.h -o tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp (282/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp -o tmp/src/gui/mrview/tool/connectome/connectome_moc.o (283/548) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp moc src/gui/mrview/tool/view.h -o tmp/src/gui/mrview/tool/view_moc.cpp (284/548) [CC] tmp/src/gui/mrview/tool/view_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/view_moc.cpp -o tmp/src/gui/mrview/tool/view_moc.o (285/548) [CC] tmp/src/gui/mrview/mode/lightbox.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/lightbox.cpp -o tmp/src/gui/mrview/mode/lightbox.o (286/548) [CC] tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/cluster.cpp -o tmp/src/stats/cluster.o (287/548) [CC] tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o (288/548) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o (289/548) [CC] tmp/src/stats/permtest.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/permtest.cpp -o tmp/src/stats/permtest.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/cluster.cpp -o tmp/src/stats/cluster.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from src/stats/cluster.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (290/548) [CC] tmp/cmd/fixelcrop.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o (291/548) [CC] tmp/cmd/fixelreorient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelreorient.cpp -o tmp/cmd/fixelreorient.o (292/548) [CC] tmp/cmd/dirmerge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o: In file included from src/stats/tfce.h:24, from src/stats/tfce.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (293/548) [CC] tmp/cmd/peaks2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/peaks2amp.cpp -o tmp/cmd/peaks2amp.o (294/548) [CC] tmp/cmd/5ttedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttedit.cpp -o tmp/cmd/5ttedit.o (295/548) [CC] tmp/src/dwi/tractography/ACT/act.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/ACT/act.cpp -o tmp/src/dwi/tractography/ACT/act.o (296/548) [CC] tmp/cmd/warp2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warp2metric.cpp -o tmp/cmd/warp2metric.o (297/548) [CC] tmp/cmd/dirflip.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirflip.cpp -o tmp/cmd/dirflip.o (298/548) [CC] tmp/cmd/mrdegibbs.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o (299/548) [LB] bin/dirmerge g++ tmp/cmd/dirmerge.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirmerge (300/548) [CC] tmp/src/dwi/tractography/editing/worker.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/worker.cpp -o tmp/src/dwi/tractography/editing/worker.o g++ tmp/cmd/dirmerge.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirmerge: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (301/548) [CC] tmp/src/dwi/tractography/editing/receiver.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/receiver.cpp -o tmp/src/dwi/tractography/editing/receiver.o (302/548) [LB] bin/mrview g++ tmp/src/connectome/connectome.o tmp/src/gui/mrview/mode/lightbox_moc.o tmp/src/gui/mrview/tool/fixel/legacy.o tmp/src/gui/mrview/tool/odf/odf_moc.o tmp/src/gui/mrview/tool/odf/model.o tmp/src/gui/mrview/window_moc.o tmp/src/gui/dialog/image_properties_moc.o tmp/src/gui/mrview/displayable.o tmp/src/exec_version.o tmp/src/gui/projection.o tmp/src/gui/dialog/file.o tmp/src/gui/mrview/spin_box_moc.o tmp/src/gui/mrview/file_open.o tmp/src/gui/dwi/renderer.o tmp/src/gui/mrview/tool/connectome/connectome.o tmp/src/gui/mrview/tool/connectome/selection_moc.o tmp/src/gui/mrview/tool/connectome/matrix_list.o tmp/src/gui/mrview/tool/connectome/node_list_moc.o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o tmp/src/gui/mrview/tool/odf/odf.o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o tmp/src/gui/opengl/shader.o tmp/src/gui/dialog/list.o tmp/src/surface/polygon.o tmp/src/gui/mrview/tool/fixel/fixel.o tmp/src/gui/mrview/tool/connectome/node_overlay.o tmp/src/gui/mrview/combo_box_error.o tmp/src/gui/mrview/tool/odf/preview.o tmp/src/dwi/directions/predefined.o tmp/src/gui/mrview/tool/connectome/file_data_vector.o tmp/src/gui/dialog/image_properties.o tmp/src/gui/dialog/opengl.o tmp/src/gui/mrview/tool/connectome/node.o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o tmp/src/gui/mrview/colourmap_button_moc.o tmp/src/gui/mrview/gui_image.o tmp/src/gui/dialog/dialog.o tmp/src/gui/mrview/tool/connectome/selection.o tmp/cmd/mrview.o tmp/src/gui/mrview/volume.o tmp/src/gui/dwi/render_frame.o tmp/src/dwi/tractography/roi.o tmp/src/gui/mrview/tool/base.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/mrview/tool/transform.o tmp/src/gui/shapes/sphere.o tmp/src/gui/mrview/mode/ortho.o tmp/src/dwi/tractography/rng.o tmp/src/gui/mrview/sync/client.o tmp/src/gui/cursor.o tmp/src/gui/mrview/displayable_moc.o tmp/src/gui/mrview/tool/transform_moc.o tmp/src/gui/mrview/window.o tmp/src/gui/mrview/tool/roi_editor/item.o tmp/src/gui/shapes/halfsphere.o tmp/src/gui/mrview/tool/screen_capture_moc.o tmp/src/gui/opengl/gl.o tmp/src/gui/mrview/tool/connectome/edge.o tmp/src/gui/color_button.o tmp/src/gui/mrview/combo_box_error_moc.o tmp/src/gui/mrview/sync/syncmanager_moc.o tmp/src/gui/opengl/lighting.o tmp/src/dwi/tractography/properties.o tmp/src/gui/mrview/mode/volume.o tmp/src/gui/shapes/cube.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/mrview/tool/overlay_moc.o tmp/src/surface/mesh_multi.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o tmp/src/gui/gui.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/mrview/sync/localsocketreader_moc.o tmp/src/surface/freesurfer.o tmp/src/gui/mrview/sync/syncmanager.o tmp/src/gui/mrview/tool/tractography/tractography_moc.o tmp/src/gui/shapes/cylinder.o tmp/src/dwi/tractography/file_base.o tmp/src/surface/mesh.o tmp/src/surface/scalar.o tmp/src/dwi/tractography/seeding/list.o tmp/src/gui/mrview/sync/interprocesscommunicator.o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o tmp/src/gui/mrview/tool/overlay.o tmp/src/connectome/lut.o tmp/src/gui/mrview/tool/fixel/fixel_moc.o tmp/src/gui/mrview/tool/fixel/image4D.o tmp/src/gui/mrview/tool/odf/item.o tmp/src/gui/mrview/tool/roi_editor/undoentry.o tmp/src/colourmap.o tmp/src/gui/mrview/sync/localsocketreader.o tmp/src/gui/mrview/tool/connectome/shaders.o tmp/src/gui/mrview/tool/roi_editor/model.o tmp/src/gui/lighting_dock.o tmp/src/gui/mrview/tool/fixel/base_fixel.o tmp/src/gui/mrview/tool/odf/preview_moc.o tmp/src/gui/dialog/dicom.o tmp/src/gui/mrview/adjust_button_moc.o tmp/src/gui/crosshair.o tmp/src/gui/mrview/tool/connectome/node_list.o tmp/src/gui/mrview/sync/processlock.o tmp/src/gui/mrview/colourbars.o tmp/src/gui/mrview/tool/tractography/tractography.o tmp/src/gui/mrview/tool/view.o tmp/src/gui/opengl/font.o tmp/src/gui/mrview/tool/roi_editor/roi.o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o tmp/src/gui/mrview/adjust_button.o tmp/src/gui/mrview/tool/screen_capture.o tmp/src/gui/mrview/tool/fixel/directory.o tmp/src/gui/color_button_moc.o tmp/src/gui/dialog/progress.o tmp/src/gui/mrview/mode/slice.o tmp/src/gui/mrview/mode/base.o tmp/src/gui/mrview/tool/tractography/tractogram.o tmp/src/gui/mrview/mode/ortho_moc.o tmp/src/gui/mrview/icons.o tmp/src/dwi/directions/set.o tmp/src/gui/mrview/colourmap_button.o tmp/src/gui/mrview/tool/connectome/connectome_moc.o tmp/src/gui/mrview/tool/view_moc.o tmp/src/gui/mrview/mode/lightbox.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib /usr/lib/aarch64-linux-gnu/libQt5OpenGL.so /usr/lib/aarch64-linux-gnu/libQt5Svg.so /usr/lib/aarch64-linux-gnu/libQt5Widgets.so /usr/lib/aarch64-linux-gnu/libQt5Gui.so /usr/lib/aarch64-linux-gnu/libQt5Network.so /usr/lib/aarch64-linux-gnu/libQt5Core.so -lGL -lpthread -o bin/mrview (303/548) [CC] tmp/src/dwi/tractography/editing/editing.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o (304/548) [LB] bin/peaks2amp g++ tmp/cmd/peaks2amp.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2amp g++ tmp/cmd/peaks2amp.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2amp: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (305/548) [CC] tmp/cmd/tckedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckedit.cpp -o tmp/cmd/tckedit.o (306/548) [CC] tmp/cmd/shbasis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/shbasis.cpp -o tmp/cmd/shbasis.o g++ tmp/src/connectome/connectome.o tmp/src/gui/mrview/mode/lightbox_moc.o tmp/src/gui/mrview/tool/fixel/legacy.o tmp/src/gui/mrview/tool/odf/odf_moc.o tmp/src/gui/mrview/tool/odf/model.o tmp/src/gui/mrview/window_moc.o tmp/src/gui/dialog/image_properties_moc.o tmp/src/gui/mrview/displayable.o tmp/src/exec_version.o tmp/src/gui/projection.o tmp/src/gui/dialog/file.o tmp/src/gui/mrview/spin_box_moc.o tmp/src/gui/mrview/file_open.o tmp/src/gui/dwi/renderer.o tmp/src/gui/mrview/tool/connectome/connectome.o tmp/src/gui/mrview/tool/connectome/selection_moc.o tmp/src/gui/mrview/tool/connectome/matrix_list.o tmp/src/gui/mrview/tool/connectome/node_list_moc.o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o tmp/src/gui/mrview/tool/odf/odf.o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o tmp/src/gui/opengl/shader.o tmp/src/gui/dialog/list.o tmp/src/surface/polygon.o tmp/src/gui/mrview/tool/fixel/fixel.o tmp/src/gui/mrview/tool/connectome/node_overlay.o tmp/src/gui/mrview/combo_box_error.o tmp/src/gui/mrview/tool/odf/preview.o tmp/src/dwi/directions/predefined.o tmp/src/gui/mrview/tool/connectome/file_data_vector.o tmp/src/gui/dialog/image_properties.o tmp/src/gui/dialog/opengl.o tmp/src/gui/mrview/tool/connectome/node.o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o tmp/src/gui/mrview/colourmap_button_moc.o tmp/src/gui/mrview/gui_image.o tmp/src/gui/dialog/dialog.o tmp/src/gui/mrview/tool/connectome/selection.o tmp/cmd/mrview.o tmp/src/gui/mrview/volume.o tmp/src/gui/dwi/render_frame.o tmp/src/dwi/tractography/roi.o tmp/src/gui/mrview/tool/base.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/mrview/tool/transform.o tmp/src/gui/shapes/sphere.o tmp/src/gui/mrview/mode/ortho.o tmp/src/dwi/tractography/rng.o tmp/src/gui/mrview/sync/client.o tmp/src/gui/cursor.o tmp/src/gui/mrview/displayable_moc.o tmp/src/gui/mrview/tool/transform_moc.o tmp/src/gui/mrview/window.o tmp/src/gui/mrview/tool/roi_editor/item.o tmp/src/gui/shapes/halfsphere.o tmp/src/gui/mrview/tool/screen_capture_moc.o tmp/src/gui/opengl/gl.o tmp/src/gui/mrview/tool/connectome/edge.o tmp/src/gui/color_button.o tmp/src/gui/mrview/combo_box_error_moc.o tmp/src/gui/mrview/sync/syncmanager_moc.o tmp/src/gui/opengl/lighting.o tmp/src/dwi/tractography/properties.o tmp/src/gui/mrview/mode/volume.o tmp/src/gui/shapes/cube.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/mrview/tool/overlay_moc.o tmp/src/surface/mesh_multi.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o tmp/src/gui/gui.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/mrview/sync/localsocketreader_moc.o tmp/src/surface/freesurfer.o tmp/src/gui/mrview/sync/syncmanager.o tmp/src/gui/mrview/tool/tractography/tractography_moc.o tmp/src/gui/shapes/cylinder.o tmp/src/dwi/tractography/file_base.o tmp/src/surface/mesh.o tmp/src/surface/scalar.o tmp/src/dwi/tractography/seeding/list.o tmp/src/gui/mrview/sync/interprocesscommunicator.o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o tmp/src/gui/mrview/tool/overlay.o tmp/src/connectome/lut.o tmp/src/gui/mrview/tool/fixel/fixel_moc.o tmp/src/gui/mrview/tool/fixel/image4D.o tmp/src/gui/mrview/tool/odf/item.o tmp/src/gui/mrview/tool/roi_editor/undoentry.o tmp/src/colourmap.o tmp/src/gui/mrview/sync/localsocketreader.o tmp/src/gui/mrview/tool/connectome/shaders.o tmp/src/gui/mrview/tool/roi_editor/model.o tmp/src/gui/lighting_dock.o tmp/src/gui/mrview/tool/fixel/base_fixel.o tmp/src/gui/mrview/tool/odf/preview_moc.o tmp/src/gui/dialog/dicom.o tmp/src/gui/mrview/adjust_button_moc.o tmp/src/gui/crosshair.o tmp/src/gui/mrview/tool/connectome/node_list.o tmp/src/gui/mrview/sync/processlock.o tmp/src/gui/mrview/colourbars.o tmp/src/gui/mrview/tool/tractography/tractography.o tmp/src/gui/mrview/tool/view.o tmp/src/gui/opengl/font.o tmp/src/gui/mrview/tool/roi_editor/roi.o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o tmp/src/gui/mrview/adjust_button.o tmp/src/gui/mrview/tool/screen_capture.o tmp/src/gui/mrview/tool/fixel/directory.o tmp/src/gui/color_button_moc.o tmp/src/gui/dialog/progress.o tmp/src/gui/mrview/mode/slice.o tmp/src/gui/mrview/mode/base.o tmp/src/gui/mrview/tool/tractography/tractogram.o tmp/src/gui/mrview/mode/ortho_moc.o tmp/src/gui/mrview/icons.o tmp/src/dwi/directions/set.o tmp/src/gui/mrview/colourmap_button.o tmp/src/gui/mrview/tool/connectome/connectome_moc.o tmp/src/gui/mrview/tool/view_moc.o tmp/src/gui/mrview/mode/lightbox.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib /usr/lib/aarch64-linux-gnu/libQt5OpenGL.so /usr/lib/aarch64-linux-gnu/libQt5Svg.so /usr/lib/aarch64-linux-gnu/libQt5Widgets.so /usr/lib/aarch64-linux-gnu/libQt5Gui.so /usr/lib/aarch64-linux-gnu/libQt5Network.so /usr/lib/aarch64-linux-gnu/libQt5Core.so -lGL -lpthread -o bin/mrview: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libQt5Svg.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libQt5Core.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libGL.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (307/548) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o (308/548) [LB] bin/dirflip g++ tmp/src/dwi/directions/file.o tmp/cmd/dirflip.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirflip g++ tmp/src/dwi/directions/file.o tmp/cmd/dirflip.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirflip: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (309/548) [CC] tmp/cmd/fixelcfestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o (310/548) [LB] bin/5ttedit g++ tmp/cmd/5ttedit.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttedit g++ tmp/cmd/5ttedit.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttedit: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (311/548) [CC] tmp/src/fixel/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/fixel/filter/smooth.cpp -o tmp/src/fixel/filter/smooth.o (312/548) [CC] tmp/src/fixel/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/fixel/matrix.cpp -o tmp/src/fixel/matrix.o (313/548) [CC] tmp/src/fixel/index_remapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/fixel/index_remapper.cpp -o tmp/src/fixel/index_remapper.o (314/548) [LB] bin/fixelcrop g++ tmp/cmd/fixelcrop.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcrop (315/548) [CC] tmp/src/stats/cfe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/cfe.cpp -o tmp/src/stats/cfe.o g++ tmp/cmd/fixelcrop.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcrop: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (316/548) [CC] tmp/cmd/mredit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mredit.cpp -o tmp/cmd/mredit.o (317/548) [LB] bin/mrdegibbs g++ tmp/cmd/mrdegibbs.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdegibbs g++ tmp/cmd/mrdegibbs.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdegibbs: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (318/548) [CC] tmp/cmd/vectorstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/vectorstats.cpp -o tmp/cmd/vectorstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from cmd/mrclusterstats.cpp:30: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (319/548) [LB] bin/mrclusterstats g++ tmp/src/stats/cluster.o tmp/src/stats/tfce.o tmp/cmd/mrclusterstats.o tmp/src/stats/permtest.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrclusterstats g++ tmp/src/stats/cluster.o tmp/src/stats/tfce.o tmp/cmd/mrclusterstats.o tmp/src/stats/permtest.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrclusterstats: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (320/548) [CC] tmp/cmd/5ttcheck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o (321/548) [LB] bin/tckedit g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/editing/worker.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/editing/receiver.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/editing/editing.o tmp/src/dwi/tractography/weights.o tmp/cmd/tckedit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckedit g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/editing/worker.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/editing/receiver.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/editing/editing.o tmp/src/dwi/tractography/weights.o tmp/cmd/tckedit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckedit: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (322/548) [CC] tmp/cmd/dwi2tensor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2tensor.cpp -o tmp/cmd/dwi2tensor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o: In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpcorrect.cpp:16: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = float; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘BoundsCheck::BoundsCheck(const BoundsCheck&)’ at cmd/warpcorrect.cpp:53:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = BoundsCheck; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = BoundsCheck&; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/warpcorrect.cpp:113:10: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘func.BoundsCheck::val.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmd/warpcorrect.cpp: In function ‘void run()’: cmd/warpcorrect.cpp:110:8: note: ‘func’ declared here 110 | auto func = BoundsCheck (precision, oob_vector, count); | ^~~~ (323/548) [LB] bin/warpcorrect g++ tmp/cmd/warpcorrect.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpcorrect g++ tmp/cmd/warpcorrect.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpcorrect: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (324/548) [CC] tmp/cmd/maskdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o (325/548) [LB] bin/fixelreorient g++ tmp/cmd/fixelreorient.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelreorient g++ tmp/cmd/fixelreorient.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelreorient: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (326/548) [CC] tmp/cmd/transformcompose.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcompose.cpp -o tmp/cmd/transformcompose.o (327/548) [LB] bin/mredit g++ tmp/cmd/mredit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mredit g++ tmp/cmd/mredit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mredit: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (328/548) [CC] tmp/cmd/maskfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskfilter.cpp -o tmp/cmd/maskfilter.o (329/548) [CC] tmp/cmd/amp2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/amp2sh.cpp -o tmp/cmd/amp2sh.o (330/548) [LB] bin/warp2metric g++ tmp/cmd/warp2metric.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warp2metric g++ tmp/cmd/warp2metric.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warp2metric: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (331/548) [CC] tmp/cmd/5tt2vis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2vis.cpp -o tmp/cmd/5tt2vis.o (332/548) [LB] bin/vectorstats g++ tmp/cmd/vectorstats.o tmp/src/stats/permtest.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/vectorstats g++ tmp/cmd/vectorstats.o tmp/src/stats/permtest.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/vectorstats: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (333/548) [CC] tmp/cmd/mrcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o (334/548) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o (335/548) [LB] bin/5ttcheck g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/cmd/5ttcheck.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttcheck g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/cmd/5ttcheck.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttcheck: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (336/548) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o (337/548) [LB] bin/maskdump g++ tmp/cmd/maskdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskdump g++ tmp/cmd/maskdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskdump: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (338/548) [CC] tmp/cmd/mrconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o (339/548) [LB] bin/shbasis g++ tmp/cmd/shbasis.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shbasis g++ tmp/cmd/shbasis.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shbasis: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (340/548) [CC] tmp/src/registration/transform/rigid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o: In file included from src/connectome/enhance.h:26, from src/connectome/enhance.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (341/548) [CC] tmp/src/registration/transform/convergence_check.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/convergence_check.cpp -o tmp/src/registration/transform/convergence_check.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o: In file included from src/connectome/enhance.h:26, from cmd/connectomeedit.cpp:18: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (342/548) [LB] bin/connectomeedit g++ tmp/src/connectome/connectome.o tmp/src/connectome/enhance.o tmp/src/stats/tfce.o tmp/cmd/connectomeedit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomeedit g++ tmp/src/connectome/connectome.o tmp/src/connectome/enhance.o tmp/src/stats/tfce.o tmp/cmd/connectomeedit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomeedit: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (343/548) [CC] tmp/src/registration/nonlinear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o (344/548) [CC] tmp/src/registration/transform/initialiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o (345/548) [LB] bin/5tt2vis g++ tmp/src/dwi/tractography/roi.o tmp/cmd/5tt2vis.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2vis (346/548) [LB] bin/transformcompose g++ tmp/cmd/transformcompose.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcompose g++ tmp/src/dwi/tractography/roi.o tmp/cmd/5tt2vis.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2vis: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (347/548) [CC] tmp/src/registration/transform/affine.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o g++ tmp/cmd/transformcompose.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcompose: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (348/548) [CC] tmp/src/registration/linear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/linear.cpp -o tmp/src/registration/linear.o (349/548) [CC] tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o (350/548) [LB] bin/fixelcfestats g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/cmd/fixelcfestats.o tmp/src/dwi/tractography/properties.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/stats/permtest.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/fixel/filter/smooth.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/stats/cfe.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcfestats (351/548) [LB] bin/dwi2tensor g++ tmp/cmd/dwi2tensor.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2tensor g++ tmp/cmd/dwi2tensor.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2tensor: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (352/548) [CC] tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/cmd/fixelcfestats.o tmp/src/dwi/tractography/properties.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/stats/permtest.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/fixel/filter/smooth.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/stats/cfe.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcfestats: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (353/548) [CC] tmp/cmd/fixelfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelfilter.cpp -o tmp/cmd/fixelfilter.o (354/548) [LB] bin/maskfilter g++ tmp/cmd/maskfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskfilter g++ tmp/cmd/maskfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskfilter: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (355/548) [CC] tmp/src/fixel/filter/connect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/fixel/filter/connect.cpp -o tmp/src/fixel/filter/connect.o (356/548) [LB] bin/mrcalc g++ tmp/cmd/mrcalc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcalc g++ tmp/cmd/mrcalc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcalc: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (357/548) [CC] tmp/cmd/sh2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o (358/548) [CC] tmp/cmd/mtnormalise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mtnormalise.cpp -o tmp/cmd/mtnormalise.o (359/548) [CC] tmp/cmd/mrcheckerboardmask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o (360/548) [CC] tmp/cmd/mrstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrstats.cpp -o tmp/cmd/mrstats.o (361/548) [LB] bin/amp2sh g++ tmp/src/exec_version.o tmp/cmd/amp2sh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2sh (362/548) [LB] bin/fixelfilter g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/properties.o tmp/cmd/fixelfilter.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/fixel/filter/connect.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/fixel/filter/smooth.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/stats/cfe.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelfilter g++ tmp/src/exec_version.o tmp/cmd/amp2sh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2sh: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (363/548) [CC] tmp/cmd/fixelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o (364/548) [LB] bin/mrcheckerboardmask g++ tmp/cmd/mrcheckerboardmask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcheckerboardmask g++ tmp/cmd/mrcheckerboardmask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcheckerboardmask: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (365/548) [CC] tmp/cmd/tckstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckstats.cpp -o tmp/cmd/tckstats.o g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/properties.o tmp/cmd/fixelfilter.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/fixel/filter/connect.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/fixel/filter/smooth.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/stats/cfe.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelfilter: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (366/548) [CC] tmp/cmd/mrcat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcat.cpp -o tmp/cmd/mrcat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o: In file included from cmd/sh2peaks.cpp:18: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.667[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (367/548) [LB] bin/sh2peaks g++ tmp/cmd/sh2peaks.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2peaks g++ tmp/cmd/sh2peaks.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2peaks: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (368/548) [CC] tmp/cmd/mrmetric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o (369/548) [LB] bin/mrstats g++ tmp/src/exec_version.o tmp/cmd/mrstats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrstats g++ tmp/src/exec_version.o tmp/cmd/mrstats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrstats: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (370/548) [CC] tmp/cmd/sh2power.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2power.cpp -o tmp/cmd/sh2power.o (371/548) [LB] bin/tckstats g++ tmp/src/dwi/tractography/properties.o tmp/cmd/tckstats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/weights.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckstats g++ tmp/src/dwi/tractography/properties.o tmp/cmd/tckstats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/weights.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckstats: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (372/548) [CC] tmp/cmd/dirgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirgen.cpp -o tmp/cmd/dirgen.o (373/548) [CC] tmp/cmd/shconv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/shconv.cpp -o tmp/cmd/shconv.o (374/548) [LB] bin/sh2power g++ tmp/cmd/sh2power.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2power g++ tmp/cmd/sh2power.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2power: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (375/548) [CC] tmp/cmd/mrcentroid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcentroid.cpp -o tmp/cmd/mrcentroid.o (376/548) [LB] bin/mrconvert g++ tmp/cmd/mrconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrconvert g++ tmp/cmd/mrconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrconvert: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (377/548) [CC] tmp/cmd/label2colour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/label2colour.cpp -o tmp/cmd/label2colour.o (378/548) [LB] bin/dirgen g++ tmp/src/dwi/directions/file.o tmp/cmd/dirgen.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirgen g++ tmp/src/dwi/directions/file.o tmp/cmd/dirgen.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirgen: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (379/548) [CC] tmp/cmd/warpinit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinit.cpp -o tmp/cmd/warpinit.o (380/548) [LB] bin/fixelconvert g++ tmp/cmd/fixelconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconvert (381/548) [LB] bin/shconv g++ tmp/cmd/shconv.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shconv g++ tmp/cmd/fixelconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconvert: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (382/548) [CC] tmp/src/dwi/tractography/GT/particlegrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particlegrid.cpp -o tmp/src/dwi/tractography/GT/particlegrid.o g++ tmp/cmd/shconv.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shconv: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (383/548) [CC] tmp/src/dwi/tractography/GT/externalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/externalenergy.cpp -o tmp/src/dwi/tractography/GT/externalenergy.o (384/548) [LB] bin/mtnormalise g++ tmp/cmd/mtnormalise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mtnormalise g++ tmp/cmd/mtnormalise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mtnormalise: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (385/548) [CC] tmp/src/dwi/tractography/GT/gt.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/gt.cpp -o tmp/src/dwi/tractography/GT/gt.o (386/548) [LB] bin/mrcentroid g++ tmp/src/exec_version.o tmp/cmd/mrcentroid.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcentroid g++ tmp/src/exec_version.o tmp/cmd/mrcentroid.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcentroid: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (387/548) [CC] tmp/src/dwi/tractography/GT/particle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particle.cpp -o tmp/src/dwi/tractography/GT/particle.o (388/548) [CC] tmp/src/dwi/tractography/GT/internalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o (389/548) [CC] tmp/src/dwi/tractography/GT/mhsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/mhsampler.cpp -o tmp/src/dwi/tractography/GT/mhsampler.o (390/548) [CC] tmp/cmd/tckglobal.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckglobal.cpp -o tmp/cmd/tckglobal.o (391/548) [CC] tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o (392/548) [LB] bin/label2colour g++ tmp/src/connectome/lut.o tmp/cmd/label2colour.o tmp/src/connectome/connectome.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2colour g++ tmp/src/connectome/lut.o tmp/cmd/label2colour.o tmp/src/connectome/connectome.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2colour: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (393/548) [CC] tmp/cmd/tcksample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksample.cpp -o tmp/cmd/tcksample.o (394/548) [LB] bin/warpinit g++ tmp/cmd/warpinit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinit g++ tmp/cmd/warpinit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinit: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (395/548) [CC] tmp/cmd/mrcolour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcolour.cpp -o tmp/cmd/mrcolour.o (396/548) [CC] tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o (397/548) [LB] bin/mrcat g++ tmp/cmd/mrcat.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcat g++ tmp/cmd/mrcat.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcat: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (398/548) [CC] tmp/cmd/dcminfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dcminfo.cpp -o tmp/cmd/dcminfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o: In member function ‘MR::DWI::Tractography::GT::ParticleEnd MR::DWI::Tractography::GT::InternalEnergyComputer::pickNeighbour()’, inlined from ‘MR::DWI::Tractography::GT::ParticleEnd MR::DWI::Tractography::GT::InternalEnergyComputer::pickNeighbour()’ at src/dwi/tractography/GT/internalenergy.cpp:95:21: src/dwi/tractography/GT/internalenergy.cpp:107:18: warning: ‘pe’ may be used uninitialized [-Wmaybe-uninitialized] 107 | return pe; | ^~ src/dwi/tractography/GT/internalenergy.cpp: In member function ‘MR::DWI::Tractography::GT::ParticleEnd MR::DWI::Tractography::GT::InternalEnergyComputer::pickNeighbour()’: src/dwi/tractography/GT/internalenergy.cpp:99:23: note: ‘pe’ declared here 99 | ParticleEnd pe; | ^~ (399/548) [CC] tmp/cmd/mrhistogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o (400/548) [CC] tmp/src/dwi/tractography/connectome/exemplar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/exemplar.cpp -o tmp/src/dwi/tractography/connectome/exemplar.o (401/548) [LB] bin/dcminfo g++ tmp/cmd/dcminfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcminfo g++ tmp/cmd/dcminfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcminfo: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (402/548) [CC] tmp/cmd/connectome2tck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o (403/548) [CC] tmp/src/dwi/tractography/connectome/extract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o: In file included from src/connectome/enhance.h:26, from cmd/connectomestats.cpp:28: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (404/548) [LB] bin/connectomestats g++ tmp/src/connectome/connectome.o tmp/src/connectome/enhance.o tmp/src/stats/tfce.o tmp/src/stats/permtest.o tmp/src/exec_version.o tmp/cmd/connectomestats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomestats g++ tmp/src/connectome/connectome.o tmp/src/connectome/enhance.o tmp/src/stats/tfce.o tmp/src/stats/permtest.o tmp/src/exec_version.o tmp/cmd/connectomestats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomestats: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (405/548) [CC] tmp/cmd/transformcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o (406/548) [LB] bin/mrcolour g++ tmp/src/colourmap.o tmp/cmd/mrcolour.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcolour g++ tmp/src/colourmap.o tmp/cmd/mrcolour.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcolour: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (407/548) [CC] tmp/src/dwi/directions/mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/mask.cpp -o tmp/src/dwi/directions/mask.o (408/548) [LB] bin/mrhistogram g++ tmp/cmd/mrhistogram.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistogram g++ tmp/cmd/mrhistogram.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistogram: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (409/548) [CC] tmp/src/dwi/fmls.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o (410/548) [CC] tmp/cmd/fod2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fod2fixel.cpp -o tmp/cmd/fod2fixel.o (411/548) [CC] tmp/cmd/label2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/label2mesh.cpp -o tmp/cmd/label2mesh.o (412/548) [CC] tmp/cmd/mraverageheader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mraverageheader.cpp -o tmp/cmd/mraverageheader.o (413/548) [LB] bin/tckglobal g++ tmp/src/dwi/tractography/GT/particlegrid.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/GT/externalenergy.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/GT/gt.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/GT/particle.o tmp/src/dwi/tractography/GT/internalenergy.o tmp/src/dwi/tractography/GT/mhsampler.o tmp/cmd/tckglobal.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckglobal g++ tmp/src/dwi/tractography/GT/particlegrid.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/GT/externalenergy.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/GT/gt.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/GT/particle.o tmp/src/dwi/tractography/GT/internalenergy.o tmp/src/dwi/tractography/GT/mhsampler.o tmp/cmd/tckglobal.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckglobal: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (414/548) [CC] tmp/cmd/tckmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckmap.cpp -o tmp/cmd/tckmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o: In file included from /usr/include/string.h:548, from /usr/include/c++/15/cstring:48, from ./core/app.h:20, from ./core/command.h:25, from cmd/dwi2adc.cpp:17: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘static void Eigen::internal::smart_copy_helper::run(const T*, const T*, T*) [with T = double]’ at /usr/include/eigen3/Eigen/src/Core/util/Memory.h:527:11, inlined from ‘void Eigen::internal::smart_copy(const T*, const T*, T*) [with T = double]’ at /usr/include/eigen3/Eigen/src/Core/util/Memory.h:517:65, inlined from ‘Eigen::DenseStorage::DenseStorage(const Eigen::DenseStorage&) [with T = double; int _Cols = 1; int _Options = 0]’ at /usr/include/eigen3/Eigen/src/Core/DenseStorage.h:593:27, inlined from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘DWI2ADC::DWI2ADC(const DWI2ADC&)’ at cmd/dwi2adc.cpp:50:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = DWI2ADC; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = DWI2ADC; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/dwi2adc.cpp:110:10: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:29:33: warning: ‘*(__int128 unsigned*)result’ may be used uninitialized [-Wmaybe-uninitialized] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ (415/548) [LB] bin/dwi2adc g++ tmp/cmd/dwi2adc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2adc g++ tmp/cmd/dwi2adc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2adc: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (416/548) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/gaussian/mapper.cpp -o tmp/src/dwi/tractography/mapping/gaussian/mapper.o (417/548) [LB] bin/connectome2tck g++ tmp/src/connectome/connectome.o tmp/src/dwi/tractography/connectome/exemplar.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/weights.o tmp/cmd/connectome2tck.o tmp/src/dwi/tractography/connectome/extract.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectome2tck g++ tmp/src/connectome/connectome.o tmp/src/dwi/tractography/connectome/exemplar.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/weights.o tmp/cmd/connectome2tck.o tmp/src/dwi/tractography/connectome/extract.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectome2tck: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (418/548) [CC] tmp/cmd/tckinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckinfo.cpp -o tmp/cmd/tckinfo.o (419/548) [LB] bin/tcksample g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/cmd/tcksample.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksample g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/cmd/tcksample.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksample: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (420/548) [CC] tmp/cmd/labelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o (421/548) [CC] tmp/cmd/peaks2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/peaks2fixel.cpp -o tmp/cmd/peaks2fixel.o (422/548) [LB] bin/label2mesh g++ tmp/src/connectome/connectome.o tmp/cmd/label2mesh.o tmp/src/surface/mesh.o tmp/src/surface/scalar.o tmp/src/surface/polygon.o tmp/src/surface/mesh_multi.o tmp/src/exec_version.o tmp/src/connectome/lut.o tmp/src/surface/freesurfer.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2mesh g++ tmp/src/connectome/connectome.o tmp/cmd/label2mesh.o tmp/src/surface/mesh.o tmp/src/surface/scalar.o tmp/src/surface/polygon.o tmp/src/surface/mesh_multi.o tmp/src/exec_version.o tmp/src/connectome/lut.o tmp/src/surface/freesurfer.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2mesh: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (423/548) [CC] tmp/cmd/amp2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/amp2response.cpp -o tmp/cmd/amp2response.o (424/548) [CC] tmp/cmd/warpconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpconvert.cpp -o tmp/cmd/warpconvert.o (425/548) [LB] bin/tckinfo g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/tckinfo.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckinfo g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/tckinfo.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckinfo: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (426/548) [CC] tmp/cmd/5tt2gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o (427/548) [CC] tmp/src/dwi/tractography/SIFT/sift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sift.cpp -o tmp/src/dwi/tractography/SIFT/sift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o: In file included from src/dwi/fmls.h:23, from src/dwi/fmls.cpp:17: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = MR::DWI::FMLS::SH_coefs]’: ./core/math/SH.h:604:33: warning: ‘*AL.1191[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (428/548) [LB] bin/fod2fixel g++ tmp/src/exec_version.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/mask.o tmp/src/dwi/fmls.o tmp/cmd/fod2fixel.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2fixel g++ tmp/src/exec_version.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/mask.o tmp/src/dwi/fmls.o tmp/cmd/fod2fixel.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2fixel: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (429/548) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/fixel_td_map.cpp -o tmp/src/dwi/tractography/mapping/fixel_td_map.o (430/548) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/gradient_sort.cpp -o tmp/src/dwi/tractography/SIFT/gradient_sort.o (431/548) [LB] bin/labelconvert g++ tmp/cmd/labelconvert.o tmp/src/connectome/connectome.o tmp/src/connectome/lut.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelconvert g++ tmp/cmd/labelconvert.o tmp/src/connectome/connectome.o tmp/src/connectome/lut.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelconvert: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (432/548) [CC] tmp/src/dwi/tractography/SIFT/sifter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o (433/548) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/track_contribution.cpp -o tmp/src/dwi/tractography/SIFT/track_contribution.o (434/548) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/track_index_range.cpp -o tmp/src/dwi/tractography/SIFT/track_index_range.o (435/548) [CC] tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o (436/548) [LB] bin/peaks2fixel g++ tmp/cmd/peaks2fixel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2fixel g++ tmp/cmd/peaks2fixel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2fixel: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (437/548) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/proc_mask.cpp -o tmp/src/dwi/tractography/SIFT/proc_mask.o (438/548) [CC] tmp/cmd/fixel2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2peaks.cpp -o tmp/cmd/fixel2peaks.o (439/548) [LB] bin/mrmetric g++ tmp/src/registration/transform/rigid.o tmp/cmd/mrmetric.o tmp/src/registration/transform/convergence_check.o tmp/src/registration/multi_contrast.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmetric (440/548) [LB] bin/5tt2gmwmi g++ tmp/src/dwi/tractography/roi.o tmp/cmd/5tt2gmwmi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2gmwmi g++ tmp/src/dwi/tractography/roi.o tmp/cmd/5tt2gmwmi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2gmwmi: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (441/548) [CC] tmp/cmd/mrfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o g++ tmp/src/registration/transform/rigid.o tmp/cmd/mrmetric.o tmp/src/registration/transform/convergence_check.o tmp/src/registration/multi_contrast.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmetric: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (442/548) [CC] tmp/cmd/dirstat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirstat.cpp -o tmp/cmd/dirstat.o (443/548) [LB] bin/mraverageheader g++ tmp/src/registration/transform/initialiser.o tmp/src/registration/transform/rigid.o tmp/cmd/mraverageheader.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/registration/transform/convergence_check.o tmp/src/registration/multi_contrast.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mraverageheader g++ tmp/src/registration/transform/initialiser.o tmp/src/registration/transform/rigid.o tmp/cmd/mraverageheader.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/registration/transform/convergence_check.o tmp/src/registration/multi_contrast.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mraverageheader: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (444/548) [CC] tmp/cmd/mrthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o (445/548) [LB] bin/warpconvert g++ tmp/cmd/warpconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpconvert g++ tmp/cmd/warpconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpconvert: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (446/548) [CC] tmp/cmd/mrgrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrgrid.cpp -o tmp/cmd/mrgrid.o (447/548) [CC] tmp/cmd/fixel2tsf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o (448/548) [LB] bin/amp2response g++ tmp/cmd/amp2response.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2response (449/548) [LB] bin/fixel2peaks g++ tmp/cmd/fixel2peaks.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2peaks g++ tmp/cmd/fixel2peaks.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2peaks: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (450/548) [CC] tmp/cmd/tensor2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tensor2metric.cpp -o tmp/cmd/tensor2metric.o g++ tmp/cmd/amp2response.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2response: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (451/548) [CC] tmp/cmd/tsfvalidate.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfvalidate.cpp -o tmp/cmd/tsfvalidate.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from src/dwi/tractography/SIFT/sifter.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (452/548) [CC] tmp/cmd/dwiextract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o (453/548) [LB] bin/dirstat g++ tmp/cmd/dirstat.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirstat g++ tmp/cmd/dirstat.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirstat: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (454/548) [CC] tmp/src/surface/filter/vertex_transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o (455/548) [LB] bin/transformcalc g++ tmp/cmd/transformcalc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcalc (456/548) [LB] bin/tsfvalidate g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/tsfvalidate.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfvalidate g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/tsfvalidate.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfvalidate: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (457/548) [CC] tmp/cmd/mesh2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o g++ tmp/cmd/transformcalc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcalc: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (458/548) [CC] tmp/src/surface/filter/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/base.cpp -o tmp/src/surface/filter/base.o (459/548) [CC] tmp/src/surface/algo/mesh2image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/algo/mesh2image.cpp -o tmp/src/surface/algo/mesh2image.o (460/548) [CC] tmp/cmd/labelstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/labelstats.cpp -o tmp/cmd/labelstats.o (461/548) [CC] tmp/cmd/tsfthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfthreshold.cpp -o tmp/cmd/tsfthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from cmd/tcksift.cpp:27: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)’ at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/vector.tcc:123:21, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/stl_vector.h:1434:21, inlined from ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/tractography/SIFT/model.h:228:30: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/sifter.h:31: src/dwi/tractography/SIFT/model.h: In member function ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’: src/dwi/tractography/SIFT/model.h:228:31: note: ‘’ declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)’ at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/vector.tcc:117:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/stl_vector.h:1434:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/fixel_map.h:47:28, inlined from ‘MR::DWI::Tractography::Mapping::Fixel_TD_map::Fixel_TD_map(const MR::Header&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/tractography/mapping/fixel_td_map.h:48:31, inlined from ‘MR::DWI::Tractography::SIFT::ModelBase::ModelBase(MR::Image&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/tractography/SIFT/model_base.h:137:39, inlined from ‘MR::DWI::Tractography::SIFT::Model::Model(Set&, const MR::DWI::Directions::FastLookupSet&) [with Set = MR::Image; Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/tractography/SIFT/model.h:68:42, inlined from ‘MR::DWI::Tractography::SIFT::SIFTer::SIFTer(MR::Image&, const MR::DWI::Directions::FastLookupSet&)’ at src/dwi/tractography/SIFT/sifter.h:64:39, inlined from ‘void run()’ at cmd/tcksift.cpp:91:30: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In function ‘void run()’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (462/548) [LB] bin/tcksift g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/SIFT/gradient_sort.o tmp/src/dwi/tractography/SIFT/sifter.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/mapping/mapper.o tmp/cmd/tcksift.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift (463/548) [LB] bin/dwiextract g++ tmp/cmd/dwiextract.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwiextract g++ tmp/cmd/dwiextract.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwiextract: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (464/548) [CC] tmp/cmd/fixel2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2sh.cpp -o tmp/cmd/fixel2sh.o g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/SIFT/gradient_sort.o tmp/src/dwi/tractography/SIFT/sifter.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/mapping/mapper.o tmp/cmd/tcksift.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (465/548) [CC] tmp/cmd/warpinvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinvert.cpp -o tmp/cmd/warpinvert.o (466/548) [LB] bin/mrthreshold g++ tmp/cmd/mrthreshold.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrthreshold g++ tmp/cmd/mrthreshold.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrthreshold: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (467/548) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o (468/548) [LB] bin/fixel2tsf g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/cmd/fixel2tsf.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2tsf (469/548) [LB] bin/tensor2metric g++ tmp/cmd/tensor2metric.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tensor2metric g++ tmp/cmd/tensor2metric.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tensor2metric: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (470/548) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/cmd/fixel2tsf.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2tsf: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (471/548) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o (472/548) [LB] bin/tsfthreshold g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/tsfthreshold.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfthreshold g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/tsfthreshold.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfthreshold: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (473/548) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/reg_calculator.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (474/548) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/streamline_stats.cpp -o tmp/src/dwi/tractography/SIFT2/streamline_stats.o (475/548) [LB] bin/labelstats g++ tmp/src/connectome/connectome.o tmp/cmd/labelstats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelstats g++ tmp/src/connectome/connectome.o tmp/cmd/labelstats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelstats: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (476/548) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o (477/548) [LB] bin/mrgrid g++ tmp/cmd/mrgrid.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrgrid g++ tmp/cmd/mrgrid.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrgrid: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (478/548) [CC] tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o (479/548) [CC] tmp/cmd/tsfinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfinfo.cpp -o tmp/cmd/tsfinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/line_search.cpp:19: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (480/548) [CC] tmp/cmd/dwi2mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2mask.cpp -o tmp/cmd/dwi2mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/fixel_updater.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (481/548) [CC] tmp/cmd/fixelcorrespondence.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcorrespondence.cpp -o tmp/cmd/fixelcorrespondence.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:21: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (482/548) [CC] tmp/cmd/tsfmult.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfmult.cpp -o tmp/cmd/tsfmult.o (483/548) [LB] bin/mrfilter g++ tmp/cmd/mrfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrfilter (484/548) [LB] bin/warpinvert g++ tmp/cmd/warpinvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinvert g++ tmp/cmd/mrfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrfilter: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (485/548) [CC] tmp/cmd/mrmath.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmath.cpp -o tmp/cmd/mrmath.o g++ tmp/cmd/warpinvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinvert: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (486/548) [RCC] tmp/src/gui/shview/icons.cpp rcc icons/shview.qrc -o tmp/src/gui/shview/icons.cpp (487/548) [CC] tmp/src/gui/shview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/shview/icons.cpp -o tmp/src/gui/shview/icons.o (488/548) [MOC] tmp/src/gui/shview/render_window_moc.cpp moc src/gui/shview/render_window.h -o tmp/src/gui/shview/render_window_moc.cpp (489/548) [CC] tmp/src/gui/shview/render_window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o (490/548) [LB] bin/mesh2voxel g++ tmp/src/connectome/connectome.o tmp/src/surface/filter/vertex_transform.o tmp/src/surface/mesh.o tmp/src/surface/scalar.o tmp/src/surface/polygon.o tmp/src/surface/mesh_multi.o tmp/src/exec_version.o tmp/cmd/mesh2voxel.o tmp/src/surface/filter/base.o tmp/src/surface/algo/mesh2image.o tmp/src/connectome/lut.o tmp/src/surface/freesurfer.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mesh2voxel (491/548) [LB] bin/tsfinfo g++ tmp/cmd/tsfinfo.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfinfo g++ tmp/src/connectome/connectome.o tmp/src/surface/filter/vertex_transform.o tmp/src/surface/mesh.o tmp/src/surface/scalar.o tmp/src/surface/polygon.o tmp/src/surface/mesh_multi.o tmp/src/exec_version.o tmp/cmd/mesh2voxel.o tmp/src/surface/filter/base.o tmp/src/surface/algo/mesh2image.o tmp/src/connectome/lut.o tmp/src/surface/freesurfer.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mesh2voxel: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (492/548) [CC] tmp/src/gui/shview/file_open.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shview/file_open.cpp -o tmp/src/gui/shview/file_open.o g++ tmp/cmd/tsfinfo.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfinfo: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (493/548) [CC] tmp/src/gui/shview/render_window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o (494/548) [LB] bin/fixel2sh g++ tmp/cmd/fixel2sh.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2sh g++ tmp/cmd/fixel2sh.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2sh: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (495/548) [CC] tmp/cmd/shview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/aarch64-linux-gnu/qt5/QtSvg -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtNetwork -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ cmd/shview.cpp -o tmp/cmd/shview.o (496/548) [CC] tmp/cmd/meshconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o (497/548) [LB] bin/tsfmult g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfmult.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfmult g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfmult.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfmult: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (498/548) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/gmwmi.cpp -o tmp/src/dwi/tractography/seeding/gmwmi.o (499/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD1.cpp -o tmp/src/dwi/tractography/algorithms/iFOD1.o (500/548) [CC] tmp/src/dwi/tractography/seeding/basic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/basic.cpp -o tmp/src/dwi/tractography/seeding/basic.o (501/548) [LB] bin/shview g++ tmp/src/gui/shview/icons.o tmp/src/gui/opengl/lighting.o tmp/src/gui/lighting_dock.o tmp/src/gui/dialog/dicom.o tmp/src/gui/crosshair.o tmp/src/gui/dialog/dialog.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dwi/render_frame.o tmp/src/exec_version.o tmp/src/gui/projection.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/dialog/file.o tmp/src/gui/opengl/font.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dwi/renderer.o tmp/src/gui/gui.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/color_button_moc.o tmp/src/gui/dialog/progress.o tmp/src/gui/opengl/shader.o tmp/src/gui/dialog/list.o tmp/src/gui/shview/render_window_moc.o tmp/src/dwi/directions/set.o tmp/src/gui/shview/file_open.o tmp/src/gui/shview/render_window.o tmp/src/gui/shapes/halfsphere.o tmp/cmd/shview.o tmp/src/gui/opengl/gl.o tmp/src/gui/color_button.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib /usr/lib/aarch64-linux-gnu/libQt5OpenGL.so /usr/lib/aarch64-linux-gnu/libQt5Svg.so /usr/lib/aarch64-linux-gnu/libQt5Widgets.so /usr/lib/aarch64-linux-gnu/libQt5Gui.so /usr/lib/aarch64-linux-gnu/libQt5Network.so /usr/lib/aarch64-linux-gnu/libQt5Core.so -lGL -lpthread -o bin/shview (502/548) [LB] bin/meshconvert g++ tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o tmp/src/exec_version.o tmp/src/surface/freesurfer.o tmp/src/surface/mesh.o tmp/src/surface/scalar.o tmp/src/surface/polygon.o tmp/cmd/meshconvert.o tmp/src/surface/filter/base.o tmp/src/surface/filter/vertex_transform.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshconvert g++ tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o tmp/src/exec_version.o tmp/src/surface/freesurfer.o tmp/src/surface/mesh.o tmp/src/surface/scalar.o tmp/src/surface/polygon.o tmp/cmd/meshconvert.o tmp/src/surface/filter/base.o tmp/src/surface/filter/vertex_transform.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshconvert: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (503/548) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/write_kernel.cpp -o tmp/src/dwi/tractography/tracking/write_kernel.o g++ tmp/src/gui/shview/icons.o tmp/src/gui/opengl/lighting.o tmp/src/gui/lighting_dock.o tmp/src/gui/dialog/dicom.o tmp/src/gui/crosshair.o tmp/src/gui/dialog/dialog.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dwi/render_frame.o tmp/src/exec_version.o tmp/src/gui/projection.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/dialog/file.o tmp/src/gui/opengl/font.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dwi/renderer.o tmp/src/gui/gui.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/color_button_moc.o tmp/src/gui/dialog/progress.o tmp/src/gui/opengl/shader.o tmp/src/gui/dialog/list.o tmp/src/gui/shview/render_window_moc.o tmp/src/dwi/directions/set.o tmp/src/gui/shview/file_open.o tmp/src/gui/shview/render_window.o tmp/src/gui/shapes/halfsphere.o tmp/cmd/shview.o tmp/src/gui/opengl/gl.o tmp/src/gui/color_button.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib /usr/lib/aarch64-linux-gnu/libQt5OpenGL.so /usr/lib/aarch64-linux-gnu/libQt5Svg.so /usr/lib/aarch64-linux-gnu/libQt5Widgets.so /usr/lib/aarch64-linux-gnu/libQt5Gui.so /usr/lib/aarch64-linux-gnu/libQt5Network.so /usr/lib/aarch64-linux-gnu/libQt5Core.so -lGL -lpthread -o bin/shview: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libQt5Svg.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libQt5Core.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libGL.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (504/548) [CC] tmp/src/dwi/tractography/seeding/dynamic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o (505/548) [CC] tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o (506/548) [LB] bin/tckmap g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/cmd/tckmap.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/gaussian/mapper.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckmap g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/tckfactor.cpp:31: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT2/tckfactor.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/vector.tcc:123:21, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/stl_vector.h:1434:21, inlined from ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/tractography/SIFT/model.h:228:30: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/tractography/SIFT/model.h: In member function ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’: src/dwi/tractography/SIFT/model.h:228:31: note: ‘’ declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (507/548) [CC] tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/cmd/tckmap.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/gaussian/mapper.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckmap: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (508/548) [CC] tmp/src/dwi/tractography/tracking/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/tractography.cpp -o tmp/src/dwi/tractography/tracking/tractography.o (509/548) [CC] tmp/src/dwi/tractography/tracking/shared.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/shared.cpp -o tmp/src/dwi/tractography/tracking/shared.o (510/548) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/ACT/gmwmi.cpp -o tmp/src/dwi/tractography/ACT/gmwmi.o (511/548) [LB] bin/fixelcorrespondence g++ tmp/cmd/fixelcorrespondence.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcorrespondence g++ tmp/cmd/fixelcorrespondence.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcorrespondence: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (512/548) [CC] tmp/src/dwi/tractography/tracking/method.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/method.cpp -o tmp/src/dwi/tractography/tracking/method.o (513/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD2.cpp -o tmp/src/dwi/tractography/algorithms/iFOD2.o (514/548) [CC] tmp/src/dwi/tractography/tracking/early_exit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/early_exit.cpp -o tmp/src/dwi/tractography/tracking/early_exit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o: In file included from src/dwi/tractography/mapping/fixel_td_map.h:21, from cmd/tcksift2.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift2.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/vector.tcc:117:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/stl_vector.h:1434:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/fixel_map.h:47:28, inlined from ‘MR::DWI::Tractography::Mapping::Fixel_TD_map::Fixel_TD_map(const MR::Header&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/tractography/mapping/fixel_td_map.h:48:31, inlined from ‘MR::DWI::Tractography::SIFT::ModelBase::ModelBase(MR::Image&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/tractography/SIFT/model_base.h:137:39, inlined from ‘MR::DWI::Tractography::SIFT::Model::Model(Set&, const MR::DWI::Directions::FastLookupSet&) [with Set = MR::Image; Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/tractography/SIFT/model.h:68:42, inlined from ‘MR::DWI::Tractography::SIFT2::TckFactor::TckFactor(MR::Image&, const MR::DWI::Directions::FastLookupSet&)’ at src/dwi/tractography/SIFT2/tckfactor.h:74:35, inlined from ‘void run()’ at cmd/tcksift2.cpp:165:36: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In function ‘void run()’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (515/548) [LB] bin/tcksift2 g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/SIFT2/reg_calculator.o tmp/src/exec_version.o tmp/src/dwi/tractography/SIFT2/tckfactor.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/SIFT2/line_search.o tmp/src/dwi/tractography/SIFT2/fixel_updater.o tmp/src/dwi/tractography/SIFT2/streamline_stats.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/cmd/tcksift2.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/directions/mask.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift2 g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/SIFT2/reg_calculator.o tmp/src/exec_version.o tmp/src/dwi/tractography/SIFT2/tckfactor.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/SIFT2/line_search.o tmp/src/dwi/tractography/SIFT2/fixel_updater.o tmp/src/dwi/tractography/SIFT2/streamline_stats.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/cmd/tcksift2.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/directions/mask.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift2: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (516/548) [CC] tmp/cmd/tsfsmooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfsmooth.cpp -o tmp/cmd/tsfsmooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/seeding.h:23, from src/dwi/tractography/seeding/seeding.cpp:18: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (517/548) [CC] tmp/cmd/fixel2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2voxel.cpp -o tmp/cmd/fixel2voxel.o (518/548) [CC] tmp/cmd/voxel2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/voxel2fixel.cpp -o tmp/cmd/voxel2fixel.o (519/548) [CC] tmp/cmd/fixelconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelconnectivity.cpp -o tmp/cmd/fixelconnectivity.o (520/548) [CC] tmp/cmd/fod2dec.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o (521/548) [LB] bin/dwi2mask g++ tmp/cmd/dwi2mask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2mask (522/548) [CC] tmp/cmd/tsfdivide.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfdivide.cpp -o tmp/cmd/tsfdivide.o g++ tmp/cmd/dwi2mask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2mask: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (523/548) [CC] tmp/cmd/meshfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o (524/548) [LB] bin/tsfsmooth g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/tsfsmooth.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfsmooth (525/548) [CC] tmp/src/surface/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/tsfsmooth.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfsmooth: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (526/548) [CC] tmp/cmd/dwidenoise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwidenoise.cpp -o tmp/cmd/dwidenoise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/dynamic.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (527/548) [CC] tmp/cmd/dirorder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirorder.cpp -o tmp/cmd/dirorder.o (528/548) [CC] tmp/src/dwi/sdeconv/msmt_csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/sdeconv/msmt_csd.cpp -o tmp/src/dwi/sdeconv/msmt_csd.o (529/548) [LB] bin/meshfilter g++ tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o tmp/src/exec_version.o tmp/src/surface/freesurfer.o tmp/cmd/meshfilter.o tmp/src/surface/filter/smooth.o tmp/src/surface/mesh.o tmp/src/surface/scalar.o tmp/src/surface/polygon.o tmp/src/surface/filter/base.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshfilter g++ tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o tmp/src/exec_version.o tmp/src/surface/freesurfer.o tmp/cmd/meshfilter.o tmp/src/surface/filter/smooth.o tmp/src/surface/mesh.o tmp/src/surface/scalar.o tmp/src/surface/polygon.o tmp/src/surface/filter/base.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshfilter: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (530/548) [CC] tmp/src/dwi/sdeconv/csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o (531/548) [LB] bin/tsfdivide g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/tsfdivide.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfdivide g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/tsfdivide.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfdivide: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (532/548) [CC] tmp/cmd/dwi2fod.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2fod.cpp -o tmp/cmd/dwi2fod.o (533/548) [LB] bin/fixelconnectivity g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/fixelconnectivity.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconnectivity (534/548) [LB] bin/voxel2fixel g++ tmp/cmd/voxel2fixel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2fixel g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/cmd/fixelconnectivity.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconnectivity: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (535/548) [CC] tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o g++ tmp/cmd/voxel2fixel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2fixel: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (536/548) [CC] tmp/cmd/sh2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2response.cpp -o tmp/cmd/sh2response.o (537/548) [CC] tmp/cmd/dirsplit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o (538/548) [LB] bin/dirsplit g++ tmp/src/dwi/directions/file.o tmp/cmd/dirsplit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirsplit g++ tmp/src/dwi/directions/file.o tmp/cmd/dirsplit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirsplit: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (539/548) [LB] bin/dirorder g++ tmp/cmd/dirorder.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirorder g++ tmp/cmd/dirorder.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirorder: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (540/548) [LB] bin/fod2dec g++ tmp/src/dwi/directions/predefined.o tmp/cmd/fod2dec.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2dec g++ tmp/src/dwi/directions/predefined.o tmp/cmd/fod2dec.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2dec: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (541/548) [LB] bin/fixel2voxel g++ tmp/cmd/fixel2voxel.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2voxel g++ tmp/cmd/fixel2voxel.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2voxel: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (542/548) [LB] bin/sh2response g++ tmp/cmd/sh2response.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2response g++ tmp/cmd/sh2response.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2response: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from cmd/afdconnectivity.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ cmd/afdconnectivity.cpp:123:57: required from here 123 | class AFDConnectivity : public DWI::Tractography::SIFT::ModelBase | ^~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/afdconnectivity.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘Fixel::Fixel(const Fixel&)’ at cmd/afdconnectivity.cpp:107:70, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Fixel}; _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/vector.tcc:117:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/stl_vector.h:1434:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]’ at src/dwi/fixel_map.h:47:28, inlined from ‘MR::DWI::Tractography::Mapping::Fixel_TD_map::Fixel_TD_map(const MR::Header&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = Fixel]’ at src/dwi/tractography/mapping/fixel_td_map.h:48:31, inlined from ‘MR::DWI::Tractography::SIFT::ModelBase::ModelBase(MR::Image&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = Fixel]’ at src/dwi/tractography/SIFT/model_base.h:137:39, inlined from ‘AFDConnectivity::AFDConnectivity(MR::Image&, const MR::DWI::Directions::FastLookupSet&, const std::string&, const std::string&)’ at cmd/afdconnectivity.cpp:131:26, inlined from ‘void run()’ at cmd/afdconnectivity.cpp:309:59: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In function ‘void run()’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (543/548) [LB] bin/afdconnectivity g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/resampling/resampling.o tmp/cmd/afdconnectivity.o tmp/src/exec_version.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/directions/mask.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/afdconnectivity g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/resampling/resampling.o tmp/cmd/afdconnectivity.o tmp/src/exec_version.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/directions/mask.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/afdconnectivity: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (544/548) [LB] bin/dwi2fod g++ tmp/src/dwi/sdeconv/msmt_csd.o tmp/src/dwi/sdeconv/csd.o tmp/cmd/dwi2fod.o tmp/src/dwi/directions/predefined.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2fod g++ tmp/src/dwi/sdeconv/msmt_csd.o tmp/src/dwi/sdeconv/csd.o tmp/cmd/dwi2fod.o tmp/src/dwi/directions/predefined.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2fod: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/aarch64-linux-gnu -isystem /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/tracking/exec.h:36, from cmd/tckgen.cpp:23: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/mapping/mapper_plugins.h:24, from src/dwi/tractography/mapping/mapper.h:31, from src/dwi/tractography/tracking/exec.h:32: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.2105[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (545/548) [LB] bin/tckgen g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/seeding/gmwmi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/algorithms/iFOD1.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/seeding/basic.o tmp/src/dwi/tractography/tracking/write_kernel.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/seeding/dynamic.o tmp/cmd/tckgen.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/seeding.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/tracking/tractography.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/tracking/shared.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/ACT/gmwmi.o tmp/src/dwi/tractography/tracking/method.o tmp/src/dwi/tractography/algorithms/iFOD2.o tmp/src/dwi/tractography/tracking/early_exit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckgen g++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/seeding/gmwmi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/algorithms/iFOD1.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/seeding/basic.o tmp/src/dwi/tractography/tracking/write_kernel.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/seeding/dynamic.o tmp/cmd/tckgen.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/seeding.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/tracking/tractography.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/tracking/shared.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/ACT/gmwmi.o tmp/src/dwi/tractography/tracking/method.o tmp/src/dwi/tractography/algorithms/iFOD2.o tmp/src/dwi/tractography/tracking/early_exit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckgen: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (546/548) [LB] bin/mrmath g++ tmp/cmd/mrmath.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmath g++ tmp/cmd/mrmath.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmath: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (547/548) [LB] bin/dwidenoise g++ tmp/cmd/dwidenoise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwidenoise g++ tmp/cmd/dwidenoise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwidenoise: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. (548/548) [LB] bin/mrregister g++ tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o tmp/src/registration/nonlinear.o tmp/src/exec_version.o tmp/src/registration/transform/initialiser.o tmp/src/registration/transform/affine.o tmp/src/registration/linear.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/registration/multi_contrast.o tmp/src/dwi/directions/predefined.o tmp/cmd/mrregister.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrregister g++ tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o tmp/src/registration/nonlinear.o tmp/src/exec_version.o tmp/src/registration/transform/initialiser.o tmp/src/registration/transform/affine.o tmp/src/registration/linear.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/registration/multi_contrast.o tmp/src/dwi/directions/predefined.o tmp/cmd/mrregister.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrregister: /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libfftw3.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.8' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.8' dh_install # Remove __pycache__ dirs that were created in build time tests find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.8' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a debian/rules override_dh_link make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.8' cp debian/mrtrix3.links.in debian/mrtrix3.links : # Generate symlinks for all the mr* commands for f in debian/mrtrix3/usr/lib/mrtrix3/bin/*; do \ bn=$(basename $f); \ if [ "$bn" = "dirsplit" ]; then \ continue; \ fi; \ echo "usr/lib/mrtrix3/bin/$bn usr/bin/$bn" >> debian/mrtrix3.links; \ echo "/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/$bn.1.gz" >> debian/mrtrix3.links; \ done echo "/usr/share/mrtrix3/matlab /usr/share/matlab/site/m/mrtrix" >> debian/mrtrix3.links echo "/usr/share/mrtrix3/matlab /usr/share/octave/site/m/mrtrix" >> debian/mrtrix3.links dh_link make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.8' dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.8' dh_compress -X.html make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.8' dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.8' dh_shlibdeps -l /build/reproducible-path/mrtrix3-3.0.8/lib dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.8' dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'mrtrix3' in '../mrtrix3_3.0.8-1_arm64.deb'. dpkg-deb: building package 'mrtrix3-dbgsym' in '../mrtrix3-dbgsym_3.0.8-1_arm64.deb'. dpkg-genbuildinfo --build=any -O../mrtrix3_3.0.8-1_arm64.buildinfo dpkg-genchanges --build=any -O../mrtrix3_3.0.8-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-03-11T06:03:45Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Wed, 11 Mar 2026 06:03:46 +0000 | +------------------------------------------------------------------------------+ mrtrix3_3.0.8-1_arm64.changes: ------------------------------ Format: 1.8 Date: Wed, 17 Dec 2025 14:44:48 +0100 Source: mrtrix3 Binary: mrtrix3 mrtrix3-dbgsym Architecture: arm64 Version: 3.0.8-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: mrtrix3 - diffusion-weighted MRI white matter tractography Closes: 1114646 1123518 Changes: mrtrix3 (3.0.8-1) unstable; urgency=medium . * Team upload. * New upstream version Closes: #1123518 * d/watch: version=5 * Standards-Version: 4.7.2 (routine-update) * Replace transitional package pkg-config by pkgconf in Build-Depends (routine-update) * d/copyright: review * Build-Conflicts: clang Closes: #1114646 * Do not run Salsa CI for i386 Checksums-Sha1: 1460b19f75928b37421b0ce8ee8089adce6a6b8f 489631624 mrtrix3-dbgsym_3.0.8-1_arm64.deb 8fd5ce71a15a007fff8de99c817e2c616ad764c5 15232 mrtrix3_3.0.8-1_arm64.buildinfo ec152f15d08f92a61e849259d0c73e9c3da7b2d1 8920020 mrtrix3_3.0.8-1_arm64.deb Checksums-Sha256: 19c142887b01775658bad3533918384c94c588e3413103bdd011baf006f51277 489631624 mrtrix3-dbgsym_3.0.8-1_arm64.deb b6b2d9317e8ccd647b929f4ca3fa48f712040aad08099a0cc119a9dafe241476 15232 mrtrix3_3.0.8-1_arm64.buildinfo 14df96d7b058229fd78da02198f7789d03d8eb1c344f0fef7bea96b86eae54d8 8920020 mrtrix3_3.0.8-1_arm64.deb Files: 2f6386a01f4e9516f4af3d77589292a8 489631624 debug optional mrtrix3-dbgsym_3.0.8-1_arm64.deb e13852dad225d25fc4326612b1b98c3a 15232 science optional mrtrix3_3.0.8-1_arm64.buildinfo 9d23757cd79b76617b70392f05835da2 8920020 science optional mrtrix3_3.0.8-1_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo Wed, 11 Mar 2026 06:03:47 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: mrtrix3 Binary: mrtrix3 mrtrix3-dbgsym Architecture: arm64 Version: 3.0.8-1 Checksums-Md5: 2f6386a01f4e9516f4af3d77589292a8 489631624 mrtrix3-dbgsym_3.0.8-1_arm64.deb 9d23757cd79b76617b70392f05835da2 8920020 mrtrix3_3.0.8-1_arm64.deb Checksums-Sha1: 1460b19f75928b37421b0ce8ee8089adce6a6b8f 489631624 mrtrix3-dbgsym_3.0.8-1_arm64.deb ec152f15d08f92a61e849259d0c73e9c3da7b2d1 8920020 mrtrix3_3.0.8-1_arm64.deb Checksums-Sha256: 19c142887b01775658bad3533918384c94c588e3413103bdd011baf006f51277 489631624 mrtrix3-dbgsym_3.0.8-1_arm64.deb 14df96d7b058229fd78da02198f7789d03d8eb1c344f0fef7bea96b86eae54d8 8920020 mrtrix3_3.0.8-1_arm64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Wed, 11 Mar 2026 06:03:40 +0000 Build-Path: /build/reproducible-path/mrtrix3-3.0.8 Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-3), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-1), bc (= 1.07.1-4+b1), binutils (= 2.45.50.20251209-1), binutils-aarch64-linux-gnu (= 2.45.50.20251209-1), binutils-common (= 2.45.50.20251209-1), bsdextrautils (= 2.41.3-1), build-essential (= 12.12), bzip2 (= 1.0.8-6), comerr-dev (= 2.1-1.47.2-3+b4), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-15 (= 15.2.0-11), cpp-15-aarch64-linux-gnu (= 15.2.0-11), cpp-aarch64-linux-gnu (= 4:15.2.0-4), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.29), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-python (= 6.20251204.1), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.16-2), file (= 1:5.46-5), findutils (= 4.10.0-3), fontconfig (= 2.15.0-2.4), fontconfig-config (= 2.15.0-2.4), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-11), g++-15-aarch64-linux-gnu (= 15.2.0-11), g++-aarch64-linux-gnu (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-15 (= 15.2.0-11), gcc-15-aarch64-linux-gnu (= 15.2.0-11), gcc-15-base (= 15.2.0-11), gcc-aarch64-linux-gnu (= 4:15.2.0-4), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), gfortran (= 4:15.2.0-4), gfortran-15 (= 15.2.0-11), gfortran-15-aarch64-linux-gnu (= 15.2.0-11), gfortran-aarch64-linux-gnu (= 4:15.2.0-4), grep (= 3.12-1), groff-base (= 1.23.0-10), gzip (= 1.13-1), hdf5-helpers (= 1.14.5+repack-4), hicolor-icon-theme (= 0.18-2), hostname (= 3.25), imagemagick (= 8:7.1.2.8+dfsg1-1), imagemagick-7-common (= 8:7.1.2.8+dfsg1-1), imagemagick-7.q16 (= 8:7.1.2.8+dfsg1-1), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.22.1-2), libacl1 (= 2.3.2-2+b1), libaec-dev (= 1.1.4-2), libaec0 (= 1.1.4-2), libamd3 (= 1:7.12.1+dfsg-1), libarchive-zip-perl (= 1.68-1), libarpack2t64 (= 3.9.1-6), libasan8 (= 15.2.0-11), libasound2-data (= 1.2.15-2), libasound2t64 (= 1.2.15-2), libatomic1 (= 15.2.0-11), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libavahi-client3 (= 0.8-17), libavahi-common-data (= 0.8-17), libavahi-common3 (= 0.8-17), libb2-1 (= 0.98.1-1.1+b2), libbinutils (= 2.45.50.20251209-1), libblas-dev (= 3.12.1-7), libblas3 (= 3.12.1-7), libblkid1 (= 2.41.3-1), libbrotli-dev (= 1.1.0-2+b9), libbrotli1 (= 1.1.0-2+b9), libbsd0 (= 0.12.2-2), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.42-6), libc-dev-bin (= 2.42-6), libc-gconv-modules-extra (= 2.42-6), libc6 (= 2.42-6), libc6-dev (= 2.42-6), libcamd3 (= 1:7.12.1+dfsg-1), libcap-ng0 (= 0.8.5-4+b2), libcap2 (= 1:2.75-10+b2), libcc1-0 (= 15.2.0-11), libccolamd3 (= 1:7.12.1+dfsg-1), libcholmod5 (= 1:7.12.1+dfsg-1), libcolamd3 (= 1:7.12.1+dfsg-1), libcom-err2 (= 1.47.2-3+b4), libcrypt-dev (= 1:4.5.1-1), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.45.50.20251209-1), libctf0 (= 2.45.50.20251209-1), libcups2t64 (= 2.4.16-1), libcurl3t64-gnutls (= 8.18.0~rc2-1), libcurl4-openssl-dev (= 8.18.0~rc2-1), libcurl4t64 (= 8.18.0~rc2-1), libcxsparse4 (= 1:7.12.1+dfsg-1), libdav1d7 (= 1.5.2-1), libdb5.3t64 (= 5.3.28+dfsg2-11), libdbus-1-3 (= 1.16.2-2), libde265-0 (= 1.0.16-1+b1), libdebconfclient0 (= 0.282), libdebhelper-perl (= 13.29), libdeflate-dev (= 1.23-2), libdeflate0 (= 1.23-2), libdouble-conversion3 (= 3.4.0-1), libdpkg-perl (= 1.22.21), libdrm-amdgpu1 (= 2.4.129-1), libdrm-common (= 2.4.129-1), libdrm2 (= 2.4.129-1), libduktape207 (= 2.7.0-2+b2), libedit2 (= 3.1-20250104-1), libegl-dev (= 1.7.0-1+b2), libegl-mesa0 (= 25.2.8-2+b2), libegl1 (= 1.7.0-1+b2), libeigen3-dev (= 3.4.0-5), libelf1t64 (= 0.194-1), libevdev2 (= 1.13.6+dfsg-1), libevent-2.1-7t64 (= 2.1.12-stable-10+b1), libexpat1 (= 2.7.3-1), libffi8 (= 3.5.2-3), libfftw3-bin (= 3.3.10-2+b1), libfftw3-dev (= 3.3.10-2+b1), libfftw3-double3 (= 3.3.10-2+b1), libfftw3-long3 (= 3.3.10-2+b1), libfftw3-single3 (= 3.3.10-2+b1), libfile-stripnondeterminism-perl (= 1.15.0-1), libflac14 (= 1.5.0+ds-5), libfltk-gl1.3t64 (= 1.3.11-3), libfltk1.3t64 (= 1.3.11-3), libfontconfig1 (= 2.15.0-2.4), libfreetype6 (= 2.13.3+dfsg-1), libgbm1 (= 25.2.8-2+b2), libgcc-15-dev (= 15.2.0-11), libgcc-s1 (= 15.2.0-11), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libgfortran-15-dev (= 15.2.0-11), libgfortran5 (= 15.2.0-11), libgl-dev (= 1.7.0-1+b2), libgl1 (= 1.7.0-1+b2), libgl1-mesa-dri (= 25.2.8-2+b2), libgl2ps1.4 (= 1.4.2+dfsg1-4), libglib2.0-0t64 (= 2.86.3-1), libglpk40 (= 5.0-2), libglu1-mesa (= 9.0.2-1.1+b3), libglu1-mesa-dev (= 9.0.2-1.1+b3), libglvnd0 (= 1.7.0-1+b2), libglx-dev (= 1.7.0-1+b2), libglx-mesa0 (= 25.2.8-2+b2), libglx0 (= 1.7.0-1+b2), libgmp-dev (= 2:6.3.0+dfsg-5), libgmp10 (= 2:6.3.0+dfsg-5), libgmpxx4ldbl (= 2:6.3.0+dfsg-5), libgnutls-dane0t64 (= 3.8.11-3), libgnutls-openssl27t64 (= 3.8.11-3), libgnutls28-dev (= 3.8.11-3), libgnutls30t64 (= 3.8.11-3), libgomp1 (= 15.2.0-11), libgprofng0 (= 2.45.50.20251209-1), libgraphicsmagick++-q16-12t64 (= 1.4+really1.3.46-2), libgraphicsmagick-q16-3t64 (= 1.4+really1.3.46-2), libgraphite2-3 (= 1.3.14-11), libgsl-dev (= 2.8+dfsg-5.1), libgsl28 (= 2.8+dfsg-5.1), libgslcblas0 (= 2.8+dfsg-5.1), libgssapi-krb5-2 (= 1.22.1-2), libgssrpc4t64 (= 1.22.1-2), libgudev-1.0-0 (= 238-7), libharfbuzz0b (= 12.2.0-1), libhdf5-310 (= 1.14.5+repack-4), libhdf5-cpp-310 (= 1.14.5+repack-4), libhdf5-dev (= 1.14.5+repack-4), libhdf5-fortran-310 (= 1.14.5+repack-4), libhdf5-hl-310 (= 1.14.5+repack-4), libhdf5-hl-cpp-310 (= 1.14.5+repack-4), libhdf5-hl-fortran-310 (= 1.14.5+repack-4), libheif-plugin-dav1d (= 1.20.2-2+b4), libheif-plugin-libde265 (= 1.20.2-2+b4), libheif1 (= 1.20.2-2+b4), libhogweed6t64 (= 3.10.2-1), libhwasan0 (= 15.2.0-11), libhwy1t64 (= 1.3.0-2), libice6 (= 2:1.1.1-1), libicu76 (= 76.1-4), libidn2-0 (= 2.3.8-4), libidn2-dev (= 2.3.8-4), libinput-bin (= 1.30.0-1), libinput10 (= 1.30.0-1), libintl-perl (= 1.35-1), libisl23 (= 0.27-1), libitm1 (= 15.2.0-11), libjack-jackd2-0 (= 1.9.22~dfsg-5), libjansson4 (= 2.14-2+b3), libjbig-dev (= 2.1-6.1+b2), libjbig0 (= 2.1-6.1+b2), libjpeg-dev (= 1:2.1.5-4), libjpeg62-turbo (= 1:2.1.5-4), libjpeg62-turbo-dev (= 1:2.1.5-4), libjxl0.11 (= 0.11.1-6), libk5crypto3 (= 1.22.1-2), libkadm5clnt-mit12 (= 1.22.1-2), libkadm5srv-mit12 (= 1.22.1-2), libkdb5-10t64 (= 1.22.1-2), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.22.1-2), libkrb5-dev (= 1.22.1-2), libkrb5support0 (= 1.22.1-2), liblapack-dev (= 3.12.1-7), liblapack3 (= 3.12.1-7), liblcms2-2 (= 2.17-1), libldap-dev (= 2.6.10+dfsg-1), libldap2 (= 2.6.10+dfsg-1), liblerc-dev (= 4.0.0+ds-5), liblerc4 (= 4.0.0+ds-5), libllvm19 (= 1:19.1.7-19), liblqr-1-0 (= 0.4.2-2.1+b2), liblsan0 (= 15.2.0-11), libltdl7 (= 2.5.4-9), liblzma-dev (= 5.8.1-2), liblzma5 (= 5.8.1-2), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmagickcore-7.q16-10 (= 8:7.1.2.8+dfsg1-1), libmagickwand-7.q16-10 (= 8:7.1.2.8+dfsg1-1), libmd0 (= 1.1.0-2+b1), libmd4c0 (= 0.5.2-2+b1), libmount1 (= 2.41.3-1), libmp3lame0 (= 3.100-6+b3), libmpc3 (= 1.3.1-2), libmpfr6 (= 4.2.2-2), libmpg123-0t64 (= 1.33.3-1), libmtdev1t64 (= 1.1.7-1), libncurses-dev (= 6.5+20251123-1), libncurses6 (= 6.5+20251123-1), libncursesw6 (= 6.5+20251123-1), libnettle8t64 (= 3.10.2-1), libnghttp2-14 (= 1.64.0-1.1+b1), libnghttp2-dev (= 1.64.0-1.1+b1), libnghttp3-9 (= 1.12.0-1), libnghttp3-dev (= 1.12.0-1), libngtcp2-16 (= 1.16.0-1), libngtcp2-crypto-gnutls8 (= 1.16.0-1), libngtcp2-crypto-ossl-dev (= 1.16.0-1), libngtcp2-crypto-ossl0 (= 1.16.0-1), libngtcp2-dev (= 1.16.0-1), libogg0 (= 1.3.6-2), libopengl-dev (= 1.7.0-1+b2), libopengl0 (= 1.7.0-1+b2), libopenjp2-7 (= 2.5.3-2.1), libopus0 (= 1.5.2-2), libp11-kit-dev (= 0.25.10-1), libp11-kit0 (= 0.25.10-1), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-16-0 (= 10.46-1), libpcre2-8-0 (= 10.46-1), libperl5.40 (= 5.40.1-7), libpipeline1 (= 1.5.8-2), libpkgconf3 (= 1.8.1-4), libpng16-16t64 (= 1.6.53-1), libportaudio2 (= 19.7.0-1), libproc2-0 (= 2:4.0.4-9), libproxy1v5 (= 0.5.12-1), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), libpython3-stdlib (= 3.13.9-2), libpython3.13-minimal (= 3.13.11-1+b1), libpython3.13-stdlib (= 3.13.11-1+b1), libqhull-r8.0 (= 2020.2-7), libqrupdate1 (= 1.1.5-3), libqscintilla2-qt6-15 (= 2.14.1+dfsg-2), libqscintilla2-qt6-l10n (= 2.14.1+dfsg-2), libqt5concurrent5t64 (= 5.15.17+dfsg-5), libqt5core5t64 (= 5.15.17+dfsg-5), libqt5dbus5t64 (= 5.15.17+dfsg-5), libqt5gui5t64 (= 5.15.17+dfsg-5), libqt5network5t64 (= 5.15.17+dfsg-5), libqt5opengl5-dev (= 5.15.17+dfsg-5), libqt5opengl5t64 (= 5.15.17+dfsg-5), libqt5printsupport5t64 (= 5.15.17+dfsg-5), libqt5sql5t64 (= 5.15.17+dfsg-5), libqt5svg5 (= 5.15.17-2), libqt5svg5-dev (= 5.15.17-2), libqt5test5t64 (= 5.15.17+dfsg-5), libqt5widgets5t64 (= 5.15.17+dfsg-5), libqt5xml5t64 (= 5.15.17+dfsg-5), libqt6core5compat6 (= 6.9.2-3), libqt6core6t64 (= 6.9.2+dfsg-3), libqt6dbus6 (= 6.9.2+dfsg-3), libqt6gui6 (= 6.9.2+dfsg-3), libqt6help6 (= 6.9.2-3), libqt6network6 (= 6.9.2+dfsg-3), libqt6opengl6 (= 6.9.2+dfsg-3), libqt6openglwidgets6 (= 6.9.2+dfsg-3), libqt6printsupport6 (= 6.9.2+dfsg-3), libqt6sql6 (= 6.9.2+dfsg-3), libqt6widgets6 (= 6.9.2+dfsg-3), libqt6xml6 (= 6.9.2+dfsg-3), libraw23t64 (= 0.21.4-2), libreadline-dev (= 8.3-3), libreadline8t64 (= 8.3-3), librtmp-dev (= 2.4+20151223.gitfa8646d.1-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-3), libsamplerate0 (= 0.2.2-4+b2), libsasl2-2 (= 2.1.28+dfsg1-10), libsasl2-modules-db (= 2.1.28+dfsg1-10), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.9-4+b1), libsensors-config (= 1:3.6.2-2), libsensors5 (= 1:3.6.2-2), libsframe2 (= 2.45.50.20251209-1), libsharpyuv-dev (= 1.5.0-0.1), libsharpyuv0 (= 1.5.0-0.1), libsm6 (= 2:1.2.6-1), libsmartcols1 (= 2.41.3-1), libsndfile1 (= 1.2.2-3), libspqr4 (= 1:7.12.1+dfsg-1), libsqlite3-0 (= 3.46.1-8), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.5.4-1), libssl3t64 (= 3.5.4-1), libstdc++-15-dev (= 15.2.0-11), libstdc++6 (= 15.2.0-11), libsuitesparseconfig7 (= 1:7.12.1+dfsg-1), libsystemd0 (= 259~rc3-1), libsz2 (= 1.1.4-2), libtasn1-6 (= 4.20.0-2), libtasn1-6-dev (= 4.20.0-2), libtext-charwidth-perl (= 0.04-11+b4), libtext-unidecode-perl (= 1.30-3), libtext-wrapi18n-perl (= 0.06-10), libtiff-dev (= 4.7.1-1), libtiff6 (= 4.7.1-1), libtiffxx6 (= 4.7.1-1), libtinfo6 (= 6.5+20251123-1), libtool (= 2.5.4-9), libts0t64 (= 1.22-1.1+b1), libtsan2 (= 15.2.0-11), libubsan1 (= 15.2.0-11), libuchardet0 (= 0.0.8-2), libudev1 (= 259~rc3-1), libumfpack6 (= 1:7.12.1+dfsg-1), libunbound8 (= 1.24.2-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41.3-1), libvorbis0a (= 1.3.7-3), libvorbisenc2 (= 1.3.7-3), libvulkan-dev (= 1.4.328.1-1), libvulkan1 (= 1.4.328.1-1), libwacom-common (= 2.16.1-1), libwacom9 (= 2.16.1-1), libwayland-client0 (= 1.24.0-2+b1), libwebp-dev (= 1.5.0-0.1), libwebp7 (= 1.5.0-0.1), libwebpdecoder3 (= 1.5.0-0.1), libwebpdemux2 (= 1.5.0-0.1), libwebpmux3 (= 1.5.0-0.1), libwmflite-0.2-7 (= 0.2.13-2), libx11-6 (= 2:1.8.12-1), libx11-data (= 2:1.8.12-1), libx11-dev (= 2:1.8.12-1), libx11-xcb1 (= 2:1.8.12-1), libxau-dev (= 1:1.0.11-1), libxau6 (= 1:1.0.11-1), libxcb-cursor0 (= 0.1.5-1), libxcb-dri3-0 (= 1.17.0-2+b1), libxcb-glx0 (= 1.17.0-2+b1), libxcb-icccm4 (= 0.4.2-1), libxcb-image0 (= 0.4.0-2+b2), libxcb-keysyms1 (= 0.4.1-1), libxcb-present0 (= 1.17.0-2+b1), libxcb-randr0 (= 1.17.0-2+b1), libxcb-render-util0 (= 0.3.10-1), libxcb-render0 (= 1.17.0-2+b1), libxcb-shape0 (= 1.17.0-2+b1), libxcb-shm0 (= 1.17.0-2+b1), libxcb-sync1 (= 1.17.0-2+b1), libxcb-util1 (= 0.4.1-1), libxcb-xfixes0 (= 1.17.0-2+b1), libxcb-xinerama0 (= 1.17.0-2+b1), libxcb-xinput0 (= 1.17.0-2+b1), libxcb-xkb1 (= 1.17.0-2+b1), libxcb1 (= 1.17.0-2+b1), libxcb1-dev (= 1.17.0-2+b1), libxcursor1 (= 1:1.2.3-1), libxdmcp-dev (= 1:1.1.5-1), libxdmcp6 (= 1:1.1.5-1), libxext-dev (= 2:1.3.4-1+b3), libxext6 (= 2:1.3.4-1+b3), libxfixes3 (= 1:6.0.0-2+b4), libxft2 (= 2.3.6-1+b4), libxinerama1 (= 2:1.1.4-3+b4), libxkbcommon-x11-0 (= 1.12.3-1), libxkbcommon0 (= 1.12.3-1), libxml-libxml-perl (= 2.0207+dfsg+really+2.0134-7), libxml-namespacesupport-perl (= 1.12-2), libxml-sax-base-perl (= 1.09-3), libxml-sax-perl (= 1.02+dfsg-4), libxml2-16 (= 2.15.1+dfsg-2+b1), libxrender1 (= 1:0.9.12-1), libxshmfence1 (= 1.3.3-1), libxxf86vm1 (= 1:1.1.4-2), libz3-4 (= 4.13.3-1), libzstd-dev (= 1.5.7+dfsg-2), libzstd1 (= 1.5.7+dfsg-2), linux-libc-dev (= 6.17.11-1), m4 (= 1.4.20-2), make (= 4.4.1-3), man-db (= 2.13.1-1), matlab-support-dev (= 0.3), mawk (= 1.3.4.20250131-1), media-types (= 14.0.0), mesa-libgallium (= 25.2.8-2+b2), ncurses-base (= 6.5+20251123-1), ncurses-bin (= 6.5+20251123-1), netbase (= 6.5), nettle-dev (= 3.10.2-1), octave (= 10.3.0-3), octave-common (= 10.3.0-3), octave-dev (= 10.3.0-3), openssl-provider-legacy (= 3.5.4-1), patch (= 2.8-2), perl (= 5.40.1-7), perl-base (= 5.40.1-7), perl-modules-5.40 (= 5.40.1-7), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.22), procps (= 2:4.0.4-9), python3 (= 3.13.9-2), python3-minimal (= 3.13.9-2), python3.13 (= 3.13.11-1+b1), python3.13-minimal (= 3.13.11-1+b1), qt5-qmake (= 5.15.17+dfsg-5), qt5-qmake-bin (= 5.15.17+dfsg-5), qtbase5-dev (= 5.15.17+dfsg-5), qtbase5-dev-tools (= 5.15.17+dfsg-5), qtchooser (= 66-2+b1), readline-common (= 8.3-3), rpcsvc-proto (= 1.4.3-1+b1), sed (= 4.9-2+b1), sensible-utils (= 0.0.26), shared-mime-info (= 2.4-5+b3), sysvinit-utils (= 3.15-6), tar (= 1.35+dfsg-3.1), tex-common (= 6.20), texinfo (= 7.2-5), texinfo-lib (= 7.2-5), tzdata (= 2025c-2), ucf (= 3.0052), util-linux (= 2.41.3-1), x11-common (= 1:7.7+26), x11proto-dev (= 2024.1-1), xkb-data (= 2.46-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.6.0-1), xz-utils (= 5.8.1-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b2), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b2) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1765979088" +------------------------------------------------------------------------------+ | Package contents Wed, 11 Mar 2026 06:03:47 +0000 | +------------------------------------------------------------------------------+ mrtrix3-dbgsym_3.0.8-1_arm64.deb 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lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/doc/mrtrix3-dbgsym -> mrtrix3 mrtrix3_3.0.8-1_arm64.deb ------------------------- new Debian package, version 2.0. size 8920020 bytes: control archive=6488 bytes. 1010 bytes, 17 lines control 15758 bytes, 230 lines md5sums Package: mrtrix3 Version: 3.0.8-1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 54474 Depends: libc6 (>= 2.38), libfftw3-double3 (>= 3.3.10), libgcc-s1 (>= 4.0), libgl1, libgomp1 (>= 4.9), libqt5core5t64 (>= 5.4.0), libqt5gui5t64 (>= 5.11.0~rc1) | libqt5gui5-gles (>= 5.11.0~rc1), libqt5network5t64 (>= 5.0.2), libqt5widgets5t64 (>= 5.15.1), libstdc++6 (>= 14), libtiff6 (>= 4.0.3), zlib1g (>= 1:1.1.4), python3 Recommends: python3-numpy Suggests: mrtrix3-doc, octave, matlab-support Conflicts: mrtrix Section: science Priority: optional Homepage: https://www.mrtrix.org Description: diffusion-weighted MRI white matter tractography Set of tools to perform diffusion-weighted MRI white matter tractography of the brain in the presence of crossing fibres, using Constrained Spherical Deconvolution, and a probabilisitic streamlines algorithm. Magnetic resonance images in DICOM, ANALYZE, or uncompressed NIfTI format are supported. drwxr-xr-x root/root 0 2025-12-17 13:44 ./ drwxr-xr-x root/root 0 2025-12-17 13:44 ./usr/ drwxr-xr-x root/root 0 2025-12-17 13:44 ./usr/bin/ lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/5tt2gmwmi -> ../lib/mrtrix3/bin/5tt2gmwmi lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/5tt2vis -> ../lib/mrtrix3/bin/5tt2vis lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/5ttcheck -> ../lib/mrtrix3/bin/5ttcheck lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/5ttedit -> ../lib/mrtrix3/bin/5ttedit lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/5ttgen -> ../lib/mrtrix3/bin/5ttgen lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/afdconnectivity -> ../lib/mrtrix3/bin/afdconnectivity lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/amp2response -> ../lib/mrtrix3/bin/amp2response lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/amp2sh -> ../lib/mrtrix3/bin/amp2sh lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/blend -> ../lib/mrtrix3/bin/blend lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/connectome2tck -> ../lib/mrtrix3/bin/connectome2tck lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/connectomeedit -> ../lib/mrtrix3/bin/connectomeedit lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/connectomestats -> ../lib/mrtrix3/bin/connectomestats lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/convert_bruker -> ../lib/mrtrix3/bin/convert_bruker lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/dcmedit -> ../lib/mrtrix3/bin/dcmedit lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/dcminfo -> ../lib/mrtrix3/bin/dcminfo lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/dirflip -> ../lib/mrtrix3/bin/dirflip lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/dirgen -> ../lib/mrtrix3/bin/dirgen lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/dirmerge -> ../lib/mrtrix3/bin/dirmerge lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/dirorder -> ../lib/mrtrix3/bin/dirorder lrwxrwxrwx 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2025-12-17 13:44 ./usr/bin/transformconvert -> ../lib/mrtrix3/bin/transformconvert lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/tsfdivide -> ../lib/mrtrix3/bin/tsfdivide lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/tsfinfo -> ../lib/mrtrix3/bin/tsfinfo lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/tsfmult -> ../lib/mrtrix3/bin/tsfmult lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/tsfsmooth -> ../lib/mrtrix3/bin/tsfsmooth lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/tsfthreshold -> ../lib/mrtrix3/bin/tsfthreshold lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/tsfvalidate -> ../lib/mrtrix3/bin/tsfvalidate lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/vectorstats -> ../lib/mrtrix3/bin/vectorstats lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/voxel2fixel -> ../lib/mrtrix3/bin/voxel2fixel lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/voxel2mesh -> ../lib/mrtrix3/bin/voxel2mesh lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/warp2metric -> ../lib/mrtrix3/bin/warp2metric lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/warpconvert -> ../lib/mrtrix3/bin/warpconvert lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/warpcorrect -> ../lib/mrtrix3/bin/warpcorrect lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/warpinit -> ../lib/mrtrix3/bin/warpinit lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/bin/warpinvert -> ../lib/mrtrix3/bin/warpinvert drwxr-xr-x root/root 0 2025-12-17 13:44 ./usr/lib/ drwxr-xr-x root/root 0 2025-12-17 13:44 ./usr/lib/mrtrix3/ drwxr-xr-x root/root 0 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/ -rwxr-xr-x root/root 264696 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/5tt2gmwmi -rwxr-xr-x root/root 264696 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/5tt2vis -rwxr-xr-x root/root 264696 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/5ttcheck -rwxr-xr-x root/root 264696 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/5ttedit -rwxr-xr-x root/root 3734 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/5ttgen -rwxr-xr-x root/root 1051344 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/afdconnectivity -rwxr-xr-x root/root 330160 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/amp2response -rwxr-xr-x root/root 395704 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/amp2sh -rwxr-xr-x root/root 2400 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/blend -rwxr-xr-x root/root 592456 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/connectome2tck -rwxr-xr-x root/root 199136 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/connectomeedit -rwxr-xr-x root/root 330192 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/connectomestats -rwxr-xr-x root/root 4467 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/convert_bruker -rwxr-xr-x root/root 68000 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dcmedit -rwxr-xr-x root/root 68000 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dcminfo -rwxr-xr-x root/root 133552 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dirflip -rwxr-xr-x root/root 199120 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dirgen -rwxr-xr-x root/root 133536 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dirmerge -rwxr-xr-x root/root 199072 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dirorder -rwxr-xr-x root/root 133552 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dirsplit -rwxr-xr-x root/root 199080 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dirstat -rwxr-xr-x root/root 199096 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dwi2adc -rwxr-xr-x root/root 592312 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dwi2fod -rwxr-xr-x root/root 395696 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dwi2mask -rwxr-xr-x root/root 6403 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dwi2response -rwxr-xr-x root/root 264624 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dwi2tensor -rwxr-xr-x root/root 3558 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dwibiascorrect -rwxr-xr-x root/root 8236 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dwicat -rwxr-xr-x root/root 854448 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dwidenoise -rwxr-xr-x root/root 133552 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dwiextract -rwxr-xr-x root/root 87478 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dwifslpreproc -rwxr-xr-x root/root 9021 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dwigradcheck -rwxr-xr-x root/root 2130 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dwinormalise -rwxr-xr-x root/root 4030 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/dwishellmath -rwxr-xr-x root/root 199104 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/fixel2peaks -rwxr-xr-x root/root 199104 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/fixel2sh -rwxr-xr-x root/root 789216 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/fixel2tsf -rwxr-xr-x root/root 592504 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/fixel2voxel -rwxr-xr-x root/root 1248000 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/fixelcfestats -rwxr-xr-x root/root 920304 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/fixelconnectivity -rwxr-xr-x root/root 264640 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/fixelconvert -rwxr-xr-x root/root 264640 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/fixelcorrespondence -rwxr-xr-x root/root 264640 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/fixelcrop -rwxr-xr-x root/root 1182464 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/fixelfilter -rwxr-xr-x root/root 264640 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/fixelreorient -rwxr-xr-x root/root 395696 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/fod2dec -rwxr-xr-x root/root 526792 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/fod2fixel -rwxr-xr-x root/root 17566 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/for_each -rwxr-xr-x root/root 5131 2025-10-21 18:03 ./usr/lib/mrtrix3/bin/gen_scheme -rwxr-xr-x root/root 264624 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/label2colour -rwxr-xr-x root/root 461248 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/label2mesh -rwxr-xr-x root/root 264624 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/labelconvert -rwxr-xr-x root/root 9725 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/labelsgmfix -rwxr-xr-x root/root 199112 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/labelstats -rwxr-xr-x root/root 133552 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/maskdump -rwxr-xr-x root/root 264672 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/maskfilter -rwxr-xr-x root/root 526776 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mesh2voxel -rwxr-xr-x root/root 395752 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/meshconvert -rwxr-xr-x root/root 395720 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/meshfilter -rwxr-xr-x root/root 723400 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mraverageheader -rwxr-xr-x root/root 330160 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrcalc -rwxr-xr-x root/root 395696 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrcat -rwxr-xr-x root/root 133552 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrcentroid -rwxr-xr-x root/root 133552 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrcheckerboardmask -rwxr-xr-x root/root 330160 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrclusterstats -rwxr-xr-x root/root 199096 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrcolour -rwxr-xr-x root/root 657848 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrconvert -rwxr-xr-x root/root 199088 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrdegibbs -rwxr-xr-x root/root 395696 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrdump -rwxr-xr-x root/root 133552 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mredit -rwxr-xr-x root/root 592360 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrfilter -rwxr-xr-x root/root 395768 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrgrid -rwxr-xr-x root/root 264664 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrhistmatch -rwxr-xr-x root/root 133552 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrhistogram -rwxr-xr-x root/root 133536 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrinfo -rwxr-xr-x root/root 1247768 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrmath -rwxr-xr-x root/root 789016 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrmetric -rwxr-xr-x root/root 3345056 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrregister -rwxr-xr-x root/root 133552 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrstats -rwxr-xr-x root/root 461232 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrthreshold -rwxr-xr-x root/root 1247736 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrtransform -rw-r--r-- root/root 3041 2025-10-21 18:03 ./usr/lib/mrtrix3/bin/mrtrix3.py -rwxr-xr-x root/root 6835 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrtrix_cleanup -rwxr-xr-x root/root 3083520 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mrview -rwxr-xr-x root/root 395736 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/mtnormalise -rwxr-xr-x root/root 1494 2025-10-21 18:03 ./usr/lib/mrtrix3/bin/notfound -rwxr-xr-x root/root 133552 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/peaks2amp -rwxr-xr-x root/root 199104 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/peaks2fixel -rwxr-xr-x root/root 73297 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/population_template -rwxr-xr-x root/root 5267 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/responsemean -rwxr-xr-x root/root 199088 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/sh2amp -rwxr-xr-x root/root 265104 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/sh2peaks -rwxr-xr-x root/root 133552 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/sh2power -rwxr-xr-x root/root 199088 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/sh2response -rwxr-xr-x root/root 264672 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/shbasis -rwxr-xr-x root/root 199088 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/shconv -rwxr-xr-x root/root 592520 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/shview -rwxr-xr-x root/root 592464 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tck2connectome -rwxr-xr-x root/root 854800 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tck2fixel -rwxr-xr-x root/root 395768 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tckconvert -rwxr-xr-x root/root 920376 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tckdfc -rwxr-xr-x root/root 395768 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tckedit -rwxr-xr-x root/root 1837856 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tckgen -rwxr-xr-x root/root 592384 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tckglobal -rwxr-xr-x root/root 264696 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tckinfo -rwxr-xr-x root/root 1444608 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tckmap -rwxr-xr-x root/root 395776 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tckresample -rwxr-xr-x root/root 854776 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tcksample -rwxr-xr-x root/root 1379024 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tcksift -rwxr-xr-x root/root 1313488 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tcksift2 -rwxr-xr-x root/root 264752 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tckstats -rwxr-xr-x root/root 395768 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tcktransform -rwxr-xr-x root/root 199120 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tensor2metric -rwxr-xr-x root/root 264696 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/transformcalc -rwxr-xr-x root/root 199088 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/transformcompose -rwxr-xr-x root/root 133560 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/transformconvert -rwxr-xr-x root/root 264696 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tsfdivide -rwxr-xr-x root/root 199160 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tsfinfo -rwxr-xr-x root/root 264696 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tsfmult -rwxr-xr-x root/root 199160 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tsfsmooth -rwxr-xr-x root/root 199160 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tsfthreshold -rwxr-xr-x root/root 264696 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/tsfvalidate -rwxr-xr-x root/root 264624 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/vectorstats -rwxr-xr-x root/root 264640 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/voxel2fixel -rwxr-xr-x root/root 461240 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/voxel2mesh -rwxr-xr-x root/root 264640 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/warp2metric -rwxr-xr-x root/root 264664 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/warpconvert -rwxr-xr-x root/root 199088 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/warpcorrect -rwxr-xr-x root/root 133552 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/warpinit -rwxr-xr-x root/root 199088 2025-12-17 13:44 ./usr/lib/mrtrix3/bin/warpinvert drwxr-xr-x root/root 0 2025-12-17 13:44 ./usr/lib/mrtrix3/icons/ -rw-r--r-- root/root 475 2025-10-21 18:03 ./usr/lib/mrtrix3/icons/adjustbutton.svg -rw-r--r-- root/root 2271 2025-10-21 18:03 ./usr/lib/mrtrix3/icons/brush.svg -rw-r--r-- root/root 1893 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./usr/share/man/man1/tck2connectome.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tck2fixel.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tckconvert.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tckdfc.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tckedit.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tckgen.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tckglobal.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tckinfo.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tckmap.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tckresample.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tcksample.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tcksift.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tcksift2.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tckstats.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tcktransform.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tensor2metric.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/transformcalc.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/transformcompose.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/transformconvert.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tsfdivide.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tsfinfo.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tsfmult.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tsfsmooth.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tsfthreshold.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/tsfvalidate.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/vectorstats.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/voxel2fixel.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/voxel2mesh.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/warp2metric.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/warpconvert.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/warpcorrect.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/warpinit.1.gz -> mrtrix3.1.gz lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/man/man1/warpinvert.1.gz -> mrtrix3.1.gz drwxr-xr-x root/root 0 2025-12-17 13:44 ./usr/share/matlab/ drwxr-xr-x root/root 0 2025-12-17 13:44 ./usr/share/matlab/site/ drwxr-xr-x root/root 0 2025-12-17 13:44 ./usr/share/matlab/site/m/ lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/matlab/site/m/mrtrix -> ../../../mrtrix3/matlab drwxr-xr-x root/root 0 2025-12-17 13:44 ./usr/share/mrtrix3/ drwxr-xr-x root/root 0 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/ drwxr-xr-x root/root 0 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/private/ -rw-r--r-- root/root 1002 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/private/add_field.m -rw-r--r-- root/root 3499 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/read_mrtrix.m -rw-r--r-- root/root 2689 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/read_mrtrix_tracks.m -rw-r--r-- root/root 2579 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/read_mrtrix_tsf.m -rw-r--r-- root/root 5065 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/write_mrtrix.m -rw-r--r-- root/root 2090 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/write_mrtrix_tracks.m -rw-r--r-- root/root 2070 2025-10-21 18:03 ./usr/share/mrtrix3/matlab/write_mrtrix_tsf.m drwxr-xr-x root/root 0 2025-12-17 13:44 ./usr/share/octave/ drwxr-xr-x root/root 0 2025-12-17 13:44 ./usr/share/octave/site/ drwxr-xr-x root/root 0 2025-12-17 13:44 ./usr/share/octave/site/m/ lrwxrwxrwx root/root 0 2025-12-17 13:44 ./usr/share/octave/site/m/mrtrix -> ../../../mrtrix3/matlab drwxr-xr-x root/root 0 2025-12-17 13:44 ./usr/share/pixmaps/ -rw-r--r-- root/root 9782 2025-12-17 13:44 ./usr/share/pixmaps/mrtrix.png +------------------------------------------------------------------------------+ | Post Build Wed, 11 Mar 2026 06:03:54 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Wed, 11 Mar 2026 06:03:54 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Wed, 11 Mar 2026 06:03:58 +0000 | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 7892832 Build-Time: 1492 Distribution: unstable Host Architecture: arm64 Install-Time: 6 Job: /srv/rebuilderd/tmp/rebuilderdMa7NOy/inputs/mrtrix3_3.0.8-1.dsc Machine Architecture: arm64 Package: mrtrix3 Package-Time: 1515 Source-Version: 3.0.8-1 Space: 7892832 Status: successful Version: 3.0.8-1 -------------------------------------------------------------------------------- Finished at 2026-03-11T06:03:45Z Build needed 00:25:15, 7892832k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdMa7NOy/out checking mrtrix3-dbgsym_3.0.8-1_arm64.deb: size differs for mrtrix3-dbgsym_3.0.8-1_arm64.deb