=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdNGbS7W/inputs/consensuscore_1.1.1+dfsg-9+b1_arm64.buildinfo Source: consensuscore Version: 1.1.1+dfsg-9 rebuilderd-worker node: codethink02-arm64 +------------------------------------------------------------------------------+ | Downloading sources Thu, 07 May 2026 05:22:52 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.6 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [151 kB] Get:7 https://deb.debian.org/debian sid InRelease [189 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6552 B] Get:11 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:12 https://deb.debian.org/debian-security trixie-security/main Sources [141 kB] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [141 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [3172 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [204 kB] Get:17 https://deb.debian.org/debian forky/main Sources [10.8 MB] Get:18 https://deb.debian.org/debian forky/non-free-firmware Sources [8488 B] Get:19 https://deb.debian.org/debian sid/main Sources [11.5 MB] Get:20 https://deb.debian.org/debian sid/non-free-firmware Sources [10.5 kB] Get:21 https://deb.debian.org/debian experimental/non-free-firmware Sources [2568 B] Get:22 https://deb.debian.org/debian experimental/main Sources [417 kB] Fetched 34.6 MB in 33s (1053 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/c/consensuscore/consensuscore_1.1.1%2bdfsg-9.dsc' consensuscore_1.1.1+dfsg-9.dsc 2374 SHA256:a0bcbadeeffeec940fb157763b05a2dbba976457217dc53b04f67799f52206bf 'https://deb.debian.org/debian/pool/main/c/consensuscore/consensuscore_1.1.1%2bdfsg.orig.tar.xz' consensuscore_1.1.1+dfsg.orig.tar.xz 363936 SHA256:47865e3769e2d6647003f70ffce68f8a5b2f69a6ae04ff27d106b3ec84660d82 'https://deb.debian.org/debian/pool/main/c/consensuscore/consensuscore_1.1.1%2bdfsg-9.debian.tar.xz' consensuscore_1.1.1+dfsg-9.debian.tar.xz 10340 SHA256:4db0ae878e268792a962af9d1bc855fe16811c67404673045a7ef2dabe5f458e 47865e3769e2d6647003f70ffce68f8a5b2f69a6ae04ff27d106b3ec84660d82 consensuscore_1.1.1+dfsg.orig.tar.xz 4db0ae878e268792a962af9d1bc855fe16811c67404673045a7ef2dabe5f458e consensuscore_1.1.1+dfsg-9.debian.tar.xz a0bcbadeeffeec940fb157763b05a2dbba976457217dc53b04f67799f52206bf consensuscore_1.1.1+dfsg-9.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Thu, 07 May 2026 05:23:25 +0000 | +------------------------------------------------------------------------------+ Rebuilding consensuscore=1.1.1+dfsg-9 in /srv/rebuilderd/tmp/rebuilderdNGbS7W/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdNGbS7W/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdNGbS7W/inputs/consensuscore_1.1.1+dfsg-9+b1_arm64.buildinfo /srv/rebuilderd/tmp/rebuilderdNGbS7W/inputs/consensuscore_1.1.1+dfsg-9+b1_arm64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/consensuscore-1.1.1+dfsg I: verifying dsc... successful! WARNING:root:found partial file in cache, consider deleting it manually: /srv/rebuilderd/cache/pool/main/g/glibc/libc6-dev_2.41-12+deb13u3_arm64.1430350.part WARNING:root:found partial file in cache, consider deleting it manually: /srv/rebuilderd/cache/archive/debian/20260506T083354Z/dists/unstable/main/binary-arm64/by-hash/SHA256/f0f193179d53a6bb556fdf81dd649991547603aa2151a4f7d5cf3d4ad5016060.1727168.part WARNING:root:found partial file in cache, consider deleting it manually: /srv/rebuilderd/cache/archive/debian/20260506T083354Z/dists/forky/main/binary-arm64/by-hash/SHA256/e01d73b4e04179e717caab81df7c8f8b19021fe1e565fa91a8849583625d662d.1393013.part Get:1 http://deb.debian.org/debian unstable InRelease [189 kB] Get:2 http://snapshot.debian.org/archive/debian/20260423T203635Z forky InRelease [148 kB] Get:3 http://snapshot.debian.org/archive/debian/20260430T144239Z forky InRelease [151 kB] Get:4 http://snapshot.debian.org/archive/debian/20260506T083354Z forky InRelease [151 kB] Get:5 http://deb.debian.org/debian unstable/main arm64 Packages [10.3 MB] Get:6 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 Packages [9659 kB] Get:7 http://snapshot.debian.org/archive/debian/20260430T144239Z forky/main arm64 Packages [9659 kB] Get:8 http://snapshot.debian.org/archive/debian/20260506T083354Z forky/main arm64 Packages [9673 kB] Fetched 40.0 MB in 5s (8060 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20260423T203635Z/dists/forky/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20260430T144239Z/dists/forky/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20260506T083354Z/dists/forky/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20260506T083354Z forky/main arm64 python3.14-dev arm64 3.14.4-2 [507 kB] Fetched 507 kB in 0s (19.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk9umnv02/python3.14-dev_3.14.4-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libpcre2-8-0 arm64 10.46-1+b1 [260 kB] Fetched 260 kB in 0s (12.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt26fcrkf/libpcre2-8-0_10.46-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 swig arm64 4.4.1-2 [1406 kB] Fetched 1406 kB in 0s (47.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcqrcz3yc/swig_4.4.1-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 base-files arm64 14 [72.9 kB] Fetched 72.9 kB in 0s (3685 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjf_g_h2v/base-files_14_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 g++-15 arm64 15.2.0-16 [27.1 kB] Fetched 27.1 kB in 0s (1149 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp09qxz8iv/g++-15_15.2.0-16_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsystemd0 arm64 260.1-1 [406 kB] Fetched 406 kB in 0s (20.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0tol5uka/libsystemd0_260.1-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 binutils-common arm64 2.46-3 [2632 kB] Fetched 2632 kB in 0s (124 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9tasgylh/binutils-common_2.46-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libmpc3 arm64 1.3.1-3 [49.3 kB] Fetched 49.3 kB in 0s (2249 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0hkbq7v3/libmpc3_1.3.1-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 22 [12.2 kB] Fetched 12.2 kB in 0s (668 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpphkorihd/dh-autoreconf_22_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.195-1 [57.5 kB] Fetched 57.5 kB in 0s (2325 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9m6iy_ew/libelf1t64_0.195-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsqlite3-0 arm64 3.46.1-9+b1 [851 kB] Fetched 851 kB in 0s (43.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy8k_db7a/libsqlite3-0_3.46.1-9+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Fetched 33.0 kB in 0s (1592 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0byaqubg/python3-inflect_7.5.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 rpcsvc-proto arm64 1.4.3-1+b2 [60.1 kB] Fetched 60.1 kB in 0s (3238 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprauvvs10/rpcsvc-proto_1.4.3-1+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 binutils arm64 2.46-3 [279 kB] Fetched 279 kB in 0s (14.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj9vbha3t/binutils_2.46-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libmd0 arm64 1.1.0-2+b2 [32.1 kB] Fetched 32.1 kB in 0s (1156 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq3z5v4m1/libmd0_1.1.0-2+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libmpfr6 arm64 4.2.2-3 [691 kB] Fetched 691 kB in 0s (28.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd1qy4de1/libmpfr6_4.2.2-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 make arm64 4.4.1-3+b1 [454 kB] Fetched 454 kB in 0s (19.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq1cyx8go/make_4.4.1-3+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.2-3 [916 kB] Fetched 916 kB in 0s (35.2 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpdvcvjdat/zlib1g-dev_1.3.dfsg+really1.3.2-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libgprofng0 arm64 2.46-3 [681 kB] Fetched 681 kB in 0s (29.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppymvm25l/libgprofng0_2.46-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-11 [539 kB] Fetched 539 kB in 0s (20.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsixl113p/libtool_2.5.4-11_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libpython3-all-dev arm64 3.13.9-3 [1072 B] Fetched 1072 B in 0s (104 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmonp6b6a/libpython3-all-dev_3.13.9-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcrypt1 arm64 1:4.5.1-1+b1 [92.4 kB] Fetched 92.4 kB in 0s (4957 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.5.1-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmp8ndt4vc_/libcrypt1_4.5.1-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-2 [8184 B] Fetched 8184 B in 0s (661 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiej3atdh/python3-jaraco.context_6.0.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (1013 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcosno81_/netbase_6.5_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.12-1 [2070 kB] Fetched 2070 kB in 0s (69.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvdk91xn0/python3.13-minimal_3.13.12-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libasan8 arm64 16-20260322-1 [2673 kB] Fetched 2673 kB in 0s (77.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp37fkpd_z/libasan8_16-20260322-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libacl1 arm64 2.3.2-3 [31.8 kB] Fetched 31.8 kB in 0s (1519 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp152vih_8/libacl1_2.3.2-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libubsan1 arm64 16-20260322-1 [1080 kB] Fetched 1080 kB in 0s (40.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprbocqe5g/libubsan1_16-20260322-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libdebconfclient0 arm64 0.282+b2 [11.3 kB] Fetched 11.3 kB in 0s (473 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9gbtikby/libdebconfclient0_0.282+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libisl23 arm64 0.27-2 [598 kB] Fetched 598 kB in 0s (23.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5fhq193r/libisl23_0.27-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 tzdata all 2026a-3 [260 kB] Fetched 260 kB in 0s (22.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2a0g7_zp/tzdata_2026a-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 file arm64 1:5.46-5+b1 [44.0 kB] Fetched 44.0 kB in 0s (4003 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpf2g8j1r6/file_5.46-5+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libjs-sphinxdoc all 8.2.3-12 [27.9 kB] Fetched 27.9 kB in 0s (1365 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph893nsai/libjs-sphinxdoc_8.2.3-12_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libtsan2 arm64 16-20260322-1 [2449 kB] Fetched 2449 kB in 0s (120 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxm5jl7ho/libtsan2_16-20260322-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 mawk arm64 1.3.4.20260302-1 [134 kB] Fetched 134 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9q6gnsmt/mawk_1.3.4.20260302-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 cpp-15 arm64 15.2.0-16 [1280 B] Fetched 1280 B in 0s (49.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0tmempnm/cpp-15_15.2.0-16_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 bsdextrautils arm64 2.42-4 [97.7 kB] Fetched 97.7 kB in 0s (4692 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ebp8__3/bsdextrautils_2.42-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 diffutils arm64 1:3.12-1+b1 [398 kB] Fetched 398 kB in 0s (20.1 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.12-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpz57erk4o/diffutils_3.12-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libjansson4 arm64 2.14-2+b4 [38.9 kB] Fetched 38.9 kB in 0s (1484 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcsc0hgo9/libjansson4_2.14-2+b4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 media-types all 14.0.0 [30.8 kB] Fetched 30.8 kB in 0s (1408 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1m7dyrum/media-types_14.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libpam-modules arm64 1.7.0-5+b1 [172 kB] Fetched 172 kB in 0s (8259 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu1b6qlaq/libpam-modules_1.7.0-5+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libatomic1 arm64 16-20260322-1 [9832 B] Fetched 9832 B in 0s (537 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiinim76p/libatomic1_16-20260322-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T083354Z forky/main arm64 libpython3.14-dev arm64 3.14.4-2 [5231 kB] Fetched 5231 kB in 0s (140 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnevns0__/libpython3.14-dev_3.14.4-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libcc1-0 arm64 16-20260322-1 [38.8 kB] Fetched 38.8 kB in 0s (1916 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbr2ty8c/libcc1-0_16-20260322-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsframe3 arm64 2.46-3 [85.0 kB] Fetched 85.0 kB in 0s (4449 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpum1ke6pz/libsframe3_2.46-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 cpp arm64 4:15.2.0-5 [1564 B] Fetched 1564 B in 0s (73.3 kB/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-5_arm64.deb' to '/srv/rebuilderd/tmp/tmpbcxbfz4e/cpp_15.2.0-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260430T144239Z forky/main arm64 libc6 arm64 2.42-15 [1385 kB] Fetched 1385 kB in 0s (96.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvkill7km/libc6_2.42-15_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 coreutils arm64 9.10-1 [3049 kB] Fetched 3049 kB in 0s (90.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe72aw7a1/coreutils_9.10-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-dev arm64 3.13.12-1 [5035 kB] Fetched 5035 kB in 0s (96.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb27m7qea/libpython3.13-dev_3.13.12-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libpam-modules-bin arm64 1.7.0-5+b1 [48.0 kB] Fetched 48.0 kB in 0s (3107 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp15tdavup/libpam-modules-bin_1.7.0-5+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libctf-nobfd0 arm64 2.46-3 [155 kB] Fetched 155 kB in 0s (8174 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqo9et9xr/libctf-nobfd0_2.46-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 perl-base arm64 5.40.1-7+b1 [1524 kB] Fetched 1524 kB in 0s (40.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpububco43/perl-base_5.40.1-7+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libstdc++-15-dev arm64 15.2.0-16 [2650 kB] Fetched 2650 kB in 0s (142 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeyw4wf0l/libstdc++-15-dev_15.2.0-16_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 patch arm64 2.8-2+b1 [128 kB] Fetched 128 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl9dkdbyl/patch_2.8-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libboost1.90-dev arm64 1.90.0-6 [11.3 MB] Fetched 11.3 MB in 0s (144 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5qk55pt7/libboost1.90-dev_1.90.0-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 gcc arm64 4:15.2.0-5 [5160 B] Fetched 5160 B in 0s (283 kB/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-5_arm64.deb' to '/srv/rebuilderd/tmp/tmpy5k88gpk/gcc_15.2.0-5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (1084 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyxihxghh/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 sed arm64 4.9-3 [326 kB] Fetched 326 kB in 0s (16.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppizbx06x/sed_4.9-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (1452 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa8g21loy/sensible-utils_0.0.26_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.2-2 [240 kB] Fetched 240 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4cq7ve00/gettext-base_0.23.2-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libgdbm-compat4t64 arm64 1.26-1+b1 [53.0 kB] Fetched 53.0 kB in 0s (2875 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7cqv75i8/libgdbm-compat4t64_1.26-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libblas3 arm64 3.12.1-7+b1 [132 kB] Fetched 132 kB in 0s (4071 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpit9yobfp/libblas3_3.12.1-7+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (399 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwmcch4e0/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 build-essential arm64 12.12 [4624 B] Fetched 4624 B in 0s (210 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe61vp4ju/build-essential_12.12_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.31 [75.7 kB] Fetched 75.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpij0du4r1/libdebhelper-perl_13.31_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libgcc-s1 arm64 16-20260322-1 [53.2 kB] Fetched 53.2 kB in 0s (1693 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwa617shj/libgcc-s1_16-20260322-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 xz-utils arm64 5.8.3-1 [738 kB] Fetched 738 kB in 0s (21.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdhncndyn/xz-utils_5.8.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.2-3 [87.9 kB] Fetched 87.9 kB in 0s (1998 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpuycrq2sk/zlib1g_1.3.dfsg+really1.3.2-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dpkg arm64 1.23.7 [1512 kB] Fetched 1512 kB in 0s (27.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyelmus4l/dpkg_1.23.7_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libcap-ng0 arm64 0.9.3-1 [17.8 kB] Fetched 17.8 kB in 0s (739 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvyskpopy/libcap-ng0_0.9.3-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.90.0.2 [3064 B] Fetched 3064 B in 0s (74.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqt7bwxqx/libboost-dev_1.90.0.2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libpython3-stdlib arm64 3.13.9-3 [10.5 kB] Fetched 10.5 kB in 0s (397 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvgruof13/libpython3-stdlib_3.13.9-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libsimde-dev all 0.8.4~rc3-5 [500 kB] Fetched 500 kB in 0s (17.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwvyvgrlx/libsimde-dev_0.8.4~rc3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 liblsan0 arm64 16-20260322-1 [1213 kB] Fetched 1213 kB in 0s (32.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkab48i44/liblsan0_16-20260322-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-4 [168 kB] Fetched 168 kB in 0s (5428 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8hql0434/libreadline8t64_8.3-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libmount1 arm64 2.42-4 [199 kB] Fetched 199 kB in 0s (9240 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3suaknbm/libmount1_2.42-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libstdc++6 arm64 16-20260322-1 [653 kB] Fetched 653 kB in 0s (27.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg6vvuuad/libstdc++6_16-20260322-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-16 [19.6 MB] Fetched 19.6 MB in 0s (84.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi0pnj6_2/gcc-15-aarch64-linux-gnu_15.2.0-16_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (869 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpgmm5fpdk/libaudit-common_4.1.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-3 [47.2 kB] Fetched 47.2 kB in 0s (2528 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp32gvvk02/libpipeline1_1.5.8-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 architecture-properties arm64 0.2.6+b2 [2632 B] Fetched 2632 B in 0s (117 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqc4e87yb/architecture-properties_0.2.6+b2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-6 [494 kB] Fetched 494 kB in 0s (23.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnhjdqnfx/autoconf_2.72-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 python3-numpy arm64 1:2.3.5+ds-3 [4184 kB] Fetched 4184 kB in 0s (82.6 MB/s) dpkg-name: info: moved 'python3-numpy_1%3a2.3.5+ds-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpy7cyzcya/python3-numpy_2.3.5+ds-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Fetched 3012 kB in 0s (55.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9uom14bq/perl-modules-5.40_5.40.1-7_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 perl arm64 5.40.1-7+b1 [264 kB] Fetched 264 kB in 0s (12.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8q5rp9ll/perl_5.40.1-7+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libudev1 arm64 260.1-1 [123 kB] Fetched 123 kB in 0s (7148 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplorroaie/libudev1_260.1-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (1231 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaa_938ut/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 sysvinit-utils arm64 3.18-1 [29.6 kB] Fetched 29.6 kB in 0s (1633 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdsaroid1/sysvinit-utils_3.18-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libgfortran5 arm64 16-20260322-1 [371 kB] Fetched 371 kB in 0s (14.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptwx1ttv4/libgfortran5_16-20260322-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libselinux1 arm64 3.10-1 [79.9 kB] Fetched 79.9 kB in 0s (4297 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt16ugwil/libselinux1_3.10-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.24.1-1 [1270 kB] Fetched 1270 kB in 0s (74.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe6cgj98s/groff-base_1.24.1-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libctf0 arm64 2.46-3 [86.0 kB] Fetched 86.0 kB in 0s (4572 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjtjs_55v/libctf0_2.46-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.2-2 [1609 kB] Fetched 1609 kB in 0s (61.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcawey_aa/gettext_0.23.2-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 openssl-provider-legacy arm64 3.6.2-1 [313 kB] Fetched 313 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcxu5plwu/openssl-provider-legacy_3.6.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libpython3-dev arm64 3.13.9-3 [10.8 kB] Fetched 10.8 kB in 0s (587 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjtrhbyf3/libpython3-dev_3.13.9-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libsmartcols1 arm64 2.42-4 [137 kB] Fetched 137 kB in 0s (6405 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoy8bmx3z/libsmartcols1_2.42-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.15.0-2 [92.5 kB] Fetched 92.5 kB in 0s (4900 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5byoickq/python3-typing-extensions_4.15.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libaudit1 arm64 1:4.1.2-1+b1 [59.7 kB] Fetched 59.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpmxe718kz/libaudit1_4.1.2-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.22 [216 kB] Fetched 216 kB in 0s (11.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ipgcysa/po-debconf_1.0.22_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libgmp10 arm64 2:6.3.0+dfsg-5+b1 [544 kB] Fetched 544 kB in 0s (24.9 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpnq2wuk4i/libgmp10_6.3.0+dfsg-5+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T083354Z forky/main arm64 libpython3.14-minimal arm64 3.14.4-2 [886 kB] Fetched 886 kB in 0s (61.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf2yoc_0u/libpython3.14-minimal_3.14.4-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libuuid1 arm64 2.42-4 [32.2 kB] Fetched 32.2 kB in 0s (1768 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd9tuuo_6/libuuid1_2.42-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dpkg-dev all 1.23.7 [1318 kB] Fetched 1318 kB in 0s (76.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptxznkb7b/dpkg-dev_1.23.7_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.4.2-1 [455 kB] Fetched 455 kB in 0s (20.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzmx6x4up/libunistring5_1.4.2-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.31 [932 kB] Fetched 932 kB in 0s (40.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpclekyvzz/debhelper_13.31_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-4 [74.8 kB] Fetched 74.8 kB in 0s (4049 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp60ghj65n/readline-common_8.3-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 ncurses-base all 6.6+20251231-1 [277 kB] Fetched 277 kB in 0s (14.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0bfyjg6y/ncurses-base_6.6+20251231-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 gzip arm64 1.13-1+b1 [135 kB] Fetched 135 kB in 0s (5731 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp574cahsl/gzip_1.13-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libgcc-15-dev arm64 15.2.0-16 [2371 kB] Fetched 2371 kB in 0s (107 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx9cvdm59/libgcc-15-dev_15.2.0-16_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 tar arm64 1.35+dfsg-4 [802 kB] Fetched 802 kB in 0s (31.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppf5no6jo/tar_1.35+dfsg-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libattr1 arm64 1:2.5.2-4 [22.7 kB] Fetched 22.7 kB in 0s (1138 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpjr0ck7b9/libattr1_2.5.2-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 base-passwd arm64 3.6.8+b1 [54.3 kB] Fetched 54.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm8cxlra6/base-passwd_3.6.8+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-16 [10.1 MB] Fetched 10.1 MB in 0s (174 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp96k9hnmy/cpp-15-aarch64-linux-gnu_15.2.0-16_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 grep arm64 3.12-1+b1 [440 kB] Fetched 440 kB in 0s (22.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsp3ene1a/grep_3.12-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 liblapack3 arm64 3.12.1-7+b1 [1815 kB] Fetched 1815 kB in 0s (63.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsapvh3tt/liblapack3_3.12.1-7+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpython3.13 arm64 3.13.12-1 [2059 kB] Fetched 2059 kB in 0s (67.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm9eg45nn/libpython3.13_3.13.12-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.18.1-4 [877 kB] Fetched 877 kB in 0s (30.8 MB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-4_all.deb' to '/srv/rebuilderd/tmp/tmpltngroq1/automake_1.18.1-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 util-linux arm64 2.42-4 [1177 kB] Fetched 1177 kB in 0s (52.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb0fd5z6x/util-linux_2.42-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (412 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxxyit41c/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 gcc-15-base arm64 15.2.0-16 [36.3 kB] Fetched 36.3 kB in 0s (1954 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuqgjbazm/gcc-15-base_15.2.0-16_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Fetched 224 kB in 0s (4394 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9bki_mgi/python3-pkg-resources_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libbz2-1.0 arm64 1.0.8-6+b1 [37.1 kB] Fetched 37.1 kB in 0s (1704 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8sm4ast1/libbz2-1.0_1.0.8-6+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libblkid1 arm64 2.42-4 [164 kB] Fetched 164 kB in 0s (8419 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7r_dkq8m/libblkid1_2.42-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 bash arm64 5.3-2 [1505 kB] Fetched 1505 kB in 0s (56.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppqufejy5/bash_5.3-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libhwasan0 arm64 16-20260322-1 [1507 kB] Fetched 1507 kB in 0s (104 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplknyjol7/libhwasan0_16-20260322-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.21-1 [323 kB] Fetched 323 kB in 0s (11.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiqez8vjl/m4_1.4.21-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dh-exec arm64 0.31 [25.7 kB] Fetched 25.7 kB in 0s (2354 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb_v49_0l/dh-exec_0.31_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libgomp1 arm64 16-20260322-1 [131 kB] Fetched 131 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu9z01681/libgomp1_16-20260322-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 findutils arm64 4.10.0-3+b1 [695 kB] Fetched 695 kB in 0s (25.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp20e5rn9e/findutils_4.10.0-3+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260430T144239Z forky/main arm64 libc-bin arm64 2.42-15 [530 kB] Fetched 530 kB in 0s (19.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdhhlsx5l/libc-bin_2.42-15_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T083354Z forky/main arm64 python3.14-minimal arm64 3.14.4-2 [2244 kB] Fetched 2244 kB in 0s (58.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8lfu10f1/python3.14-minimal_3.14.4-2_arm64.deb' Downloading dependency 1 of 196: python3.14-dev:arm64=3.14.4-2 Downloading dependency 2 of 196: libpcre2-8-0:arm64=10.46-1+b1 Downloading dependency 3 of 196: swig:arm64=4.4.1-2 Downloading dependency 4 of 196: base-files:arm64=14 Downloading dependency 5 of 196: g++-15:arm64=15.2.0-16 Downloading dependency 6 of 196: libsystemd0:arm64=260.1-1 Downloading dependency 7 of 196: binutils-common:arm64=2.46-3 Downloading dependency 8 of 196: libmpc3:arm64=1.3.1-3 Downloading dependency 9 of 196: dh-autoreconf:arm64=22 Downloading dependency 10 of 196: libelf1t64:arm64=0.195-1 Downloading dependency 11 of 196: 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dependency 122 of 196: libbz2-1.0:arm64=1.0.8-6+b1 Downloading dependency 123 of 196: libblkid1:arm64=2.42-4 Downloading dependency 124 of 196: bash:arm64=5.3-2 Downloading dependency 125 of 196: libhwasan0:arm64=16-20260322-1 Downloading dependency 126 of 196: m4:arm64=1.4.21-1 Downloading dependency 127 of 196: dh-exec:arm64=0.31 Downloading dependency 128 of 196: libgomp1:arm64=16-20260322-1 Downloading dependency 129 of 196: findutils:arm64=4.10.0-3+b1 Downloading dependency 130 of 196: libc-bin:arm64=2.42-15 Downloading dependency 131 of 196: python3.14-minimal:arm64=3.14.4-2 Downloading dependency 132 of 196: bzip2:arm64=1.0.8-6+b1Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 bzip2 arm64 1.0.8-6+b1 [39.7 kB] Fetched 39.7 kB in 0s (2059 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps96yavnt/bzip2_1.0.8-6+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.12-1 [776 kB] Fetched 776 kB in 0s (32.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9hy9e91h/python3.13_3.13.12-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libtinfo6 arm64 6.6+20251231-1 [346 kB] Fetched 346 kB in 0s (15.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkoubka3a/libtinfo6_6.6+20251231-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libssl3t64 arm64 3.6.2-1 [2769 kB] Fetched 2769 kB in 0s (70.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0p79067j/libssl3t64_3.6.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260430T144239Z forky/main arm64 linux-libc-dev all 6.19.13-1 [1980 kB] Fetched 1980 kB in 0s (54.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3o7dfajb/linux-libc-dev_6.19.13-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libncursesw6 arm64 6.6+20251231-1 [125 kB] Fetched 125 kB in 0s (5573 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkd77ropb/libncursesw6_6.6+20251231-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1+b1 [1455 kB] Fetched 1455 kB in 0s (92.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphx35kdw_/man-db_2.13.1-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 gcc-16-base arm64 16-20260322-1 [35.6 kB] Fetched 35.6 kB in 0s (1880 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvrs8kp83/gcc-16-base_16-20260322-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Fetched 71.7 kB in 0s (3808 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9pi7aube/python3-more-itertools_10.8.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 python3-numpy-dev arm64 1:2.3.5+ds-3 [135 kB] Fetched 135 kB in 0s (7244 kB/s) dpkg-name: info: moved 'python3-numpy-dev_1%3a2.3.5+ds-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpee7g359h/python3-numpy-dev_2.3.5+ds-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 g++ arm64 4:15.2.0-5 [1332 B] Fetched 1332 B in 0s (72.9 kB/s) dpkg-name: info: moved 'g++_4%3a15.2.0-5_arm64.deb' to '/srv/rebuilderd/tmp/tmp6rnduw1t/g++_15.2.0-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libmagic-mgc arm64 1:5.46-5+b1 [338 kB] Fetched 338 kB in 0s (16.8 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmp56jqjbek/libmagic-mgc_5.46-5+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-5 [1196 B] Fetched 1196 B in 0s (66.0 kB/s) dpkg-name: info: moved 'g++-aarch64-linux-gnu_4%3a15.2.0-5_arm64.deb' to '/srv/rebuilderd/tmp/tmp4bzqlpda/g++-aarch64-linux-gnu_15.2.0-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T083354Z forky/main arm64 python3.14 arm64 3.14.4-2 [837 kB] Fetched 837 kB in 0s (29.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph5ix3qb0/python3.14_3.14.4-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3.13-dev arm64 3.13.12-1 [504 kB] Fetched 504 kB in 0s (21.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphs0uzf62/python3.13-dev_3.13.12-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 liblzma5 arm64 5.8.3-1 [324 kB] Fetched 324 kB in 0s (16.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa3ec2pa3/liblzma5_5.8.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T083354Z forky/main arm64 libpython3.14-stdlib arm64 3.14.4-2 [2180 kB] Fetched 2180 kB in 0s (115 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyqc_wvqk/libpython3.14-stdlib_3.14.4-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260430T144239Z forky/main arm64 libc6-dev arm64 2.42-15 [1617 kB] Fetched 1617 kB in 0s (52.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfwjhsv7q/libc6-dev_2.42-15_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libseccomp2 arm64 2.6.0-2+b1 [50.9 kB] Fetched 50.9 kB in 0s (2735 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeoqzsfqh/libseccomp2_2.6.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-5 [5320 B] Fetched 5320 B in 0s (278 kB/s) dpkg-name: info: moved 'cpp-aarch64-linux-gnu_4%3a15.2.0-5_arm64.deb' to '/srv/rebuilderd/tmp/tmp93z5e_0f/cpp-aarch64-linux-gnu_15.2.0-5_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 binutils-aarch64-linux-gnu arm64 2.46-3 [867 kB] Fetched 867 kB in 0s (61.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeialup2r/binutils-aarch64-linux-gnu_2.46-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-11+b1 [626 kB] Fetched 626 kB in 0s (22.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw8sdbyku/libdb5.3t64_5.3.28+dfsg2-11+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libbinutils arm64 2.46-3 [687 kB] Fetched 687 kB in 0s (32.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmporqiiss0/libbinutils_2.46-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-5 [1432 B] Fetched 1432 B in 0s (0 B/s) dpkg-name: info: moved 'gcc-aarch64-linux-gnu_4%3a15.2.0-5_arm64.deb' to '/srv/rebuilderd/tmp/tmpixqie4bq/gcc-aarch64-linux-gnu_15.2.0-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libexpat1 arm64 2.7.5-1 [100.0 kB] Fetched 100.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsepxfatx/libexpat1_2.7.5-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-4 [13.7 kB] Fetched 13.7 kB in 0s (657 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp68qly_z2/python3-autocommand_2.2.2-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.12-1 [1908 kB] Fetched 1908 kB in 0s (60.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfzr_1fuj/libpython3.13-stdlib_3.13.12-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.12-1 [860 kB] Fetched 860 kB in 0s (38.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptvq50e5g/libpython3.13-minimal_3.13.12-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260430T144239Z forky/main arm64 libc-gconv-modules-extra arm64 2.42-15 [1131 kB] Fetched 1131 kB in 0s (39.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu1rym3fg/libc-gconv-modules-extra_2.42-15_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.4-2 [37.2 kB] Fetched 37.2 kB in 0s (1581 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn7mf97xj/python3-typeguard_4.4.4-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libuchardet0 arm64 0.0.8-2+b1 [69.1 kB] Fetched 69.1 kB in 0s (3646 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmvj7xeuf/libuchardet0_0.0.8-2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-4 [99.2 kB] Fetched 99.2 kB in 0s (5339 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd6bl8r3k/dwz_0.16-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libperl5.40 arm64 5.40.1-7+b1 [4156 kB] Fetched 4156 kB in 0s (149 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjhs7_ror/libperl5.40_5.40.1-7+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 python3-dev arm64 3.13.9-3 [26.0 kB] Fetched 26.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2y_8xs4c/python3-dev_3.13.9-3_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 hostname arm64 3.25+b1 [11.2 kB] Fetched 11.2 kB in 0s (636 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv39sz3vz/hostname_3.25+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 python3-minimal arm64 3.13.9-3 [27.6 kB] Fetched 27.6 kB in 0s (1689 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7qw2yzzd/python3-minimal_3.13.9-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libmagic1t64 arm64 1:5.46-5+b1 [103 kB] Fetched 103 kB in 0s (5494 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmplb2yp16g/libmagic1t64_5.46-5+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.15.2+dfsg-0.1 [592 kB] Fetched 592 kB in 0s (27.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprko3a4ry/libxml2-16_2.15.2+dfsg-0.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 ncurses-bin arm64 6.6+20251231-1 [438 kB] Fetched 438 kB in 0s (21.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvqz47tww/ncurses-bin_6.6+20251231-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Fetched 11.0 kB in 0s (580 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9d584uu2/python3-zipp_3.23.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-16 [11.1 MB] Fetched 11.1 MB in 0s (125 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxlv7l64i/g++-15-aarch64-linux-gnu_15.2.0-16_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Fetched 60.0 kB in 0s (2860 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl0mr_d1y/autotools-dev_20240727.1+nmu1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdboc35wm/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libgdbm6t64 arm64 1.26-1+b1 [77.1 kB] Fetched 77.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvcvqvozq/libgdbm6t64_1.26-1+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Fetched 738 kB in 0s (33.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwb2gax41/python3-setuptools_78.1.1-0.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 debconf all 1.5.92 [123 kB] Fetched 123 kB in 0s (6542 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiox4hfm4/debconf_1.5.92_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libitm1 arm64 16-20260322-1 [24.2 kB] Fetched 24.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2hmp1h8b/libitm1_16-20260322-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 debianutils arm64 5.23.2+b1 [92.6 kB] Fetched 92.6 kB in 0s (4998 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcwxva0fd/debianutils_5.23.2+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-4 [22.2 kB] Fetched 22.2 kB in 0s (1018 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphhz450s_/libffi8_3.5.2-4_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libdpkg-perl all 1.23.7 [669 kB] Fetched 669 kB in 0s (27.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppya2wnz7/libdpkg-perl_1.23.7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T083354Z forky/main arm64 libpython3.14 arm64 3.14.4-2 [2244 kB] Fetched 2244 kB in 0s (94.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9ob56uh1/libpython3.14_3.14.4-2_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (2122 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnm_6fe92/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (9678 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0q78ico1/libpam-runtime_1.7.0-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 python3-all-dev arm64 3.13.9-3 [1068 B] Fetched 1068 B in 0s (89.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphfmhbjfv/python3-all-dev_3.13.9-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libexpat1-dev arm64 2.7.5-1 [152 kB] Fetched 152 kB in 0s (7927 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuop2_zq0/libexpat1-dev_2.7.5-1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (585 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwbyf665x/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libzstd1 arm64 1.5.7+dfsg-3+b1 [261 kB] Fetched 261 kB in 0s (25.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdxlaz7qp/libzstd1_1.5.7+dfsg-3+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dh-python all 7.20260309 [114 kB] Fetched 114 kB in 0s (5422 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqgjgsrgd/dh-python_7.20260309_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 python3-all arm64 3.13.9-3 [1048 B] Fetched 1048 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppxmqgmk6/python3-all_3.13.9-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 gcc-15 arm64 15.2.0-16 [529 kB] Fetched 529 kB in 0s (20.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6eepdamz/gcc-15_15.2.0-16_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 libpam0g arm64 1.7.0-5+b1 [68.7 kB] Fetched 68.7 kB in 0s (3246 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwsm0suea/libpam0g_1.7.0-5+b1_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 dash arm64 0.5.12-12+b1 [95.6 kB] Fetched 95.6 kB in 0s (5077 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpggpkc5si/dash_0.5.12-12+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260423T203635Z forky/main arm64 python3 arm64 3.13.9-3 [27.6 kB] Fetched 27.6 kB in 0s (1497 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdtjtu_s2/python3_3.13.9-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260430T144239Z forky/main arm64 libc-dev-bin arm64 2.42-15 [36.7 kB] Fetched 36.7 kB in 0s (1994 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzeri0tts/libc-dev-bin_2.42-15_arm64.deb' Get:1 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.2-2 [770 kB] Fetched 770 kB in 0s (35.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy7cz8j6p/autopoint_0.23.2-2_all.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture arm64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_arm64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmp2yayf849/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture arm64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.sS5Rb0HfMV as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.sS5Rb0HfMV 127.0.0.1 - - [07/May/2026 06:26:27] code 404, message File not found 127.0.0.1 - - [07/May/2026 06:26:27] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:42305 ./ InRelease 127.0.0.1 - - [07/May/2026 06:26:27] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:42305 ./ Release [462 B] 127.0.0.1 - - [07/May/2026 06:26:27] code 404, message File not found 127.0.0.1 - - [07/May/2026 06:26:27] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:42305 ./ Release.gpg 127.0.0.1 - - [07/May/2026 06:26:27] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:42305 ./ Packages [236 kB] Fetched 237 kB in 0s (4730 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [07/May/2026 06:26:27] "GET /./gcc-16-base_16-20260322-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/May/2026 06:26:27] "GET /./libc-gconv-modules-extra_2.42-15_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/May/2026 06:26:27] "GET /./libc6_2.42-15_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/May/2026 06:26:27] "GET /./libgcc-s1_16-20260322-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/May/2026 06:26:27] "GET /./mawk_1.3.4.20260302-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/May/2026 06:26:27] "GET /./base-files_14_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/May/2026 06:26:27] "GET /./libtinfo6_6.6%2b20251231-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/May/2026 06:26:27] "GET /./debianutils_5.23.2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/May/2026 06:26:27] "GET /./bash_5.3-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/May/2026 06:26:27] "GET /./libacl1_2.3.2-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/May/2026 06:26:27] "GET /./libattr1_2.5.2-4_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - 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127.0.0.1 - - [07/May/2026 06:26:27] "GET /./sysvinit-utils_3.18-1_arm64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.sS5Rb0HfMV 127.0.0.1 - - [07/May/2026 06:26:31] code 404, message File not found 127.0.0.1 - - [07/May/2026 06:26:31] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:42305 ./ InRelease 127.0.0.1 - - [07/May/2026 06:26:31] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:42305 ./ Release 127.0.0.1 - - [07/May/2026 06:26:31] code 404, message File not found 127.0.0.1 - - [07/May/2026 06:26:31] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:42305 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... 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127.0.0.1 - - [07/May/2026 06:26:42] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmp2yayf849/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.sS5Rb0HfMV Reading package lists... Building dependency tree... Reading state information... python3.14-dev is already the newest version (3.14.4-2). python3.14-dev set to manually installed. libpcre2-8-0 is already the newest version (10.46-1+b1). swig is already the newest version (4.4.1-2). swig set to manually installed. base-files is already the newest version (14). g++-15 is already the newest version (15.2.0-16). g++-15 set to manually installed. libsystemd0 is already the newest version (260.1-1). binutils-common is already the newest version (2.46-3). binutils-common set to manually installed. libmpc3 is already the newest version (1.3.1-3). libmpc3 set to manually installed. dh-autoreconf is already the newest version (22). dh-autoreconf set to manually installed. libelf1t64 is already the newest version (0.195-1). libelf1t64 set to manually installed. libsqlite3-0 is already the newest version (3.46.1-9+b1). libsqlite3-0 set to manually installed. python3-inflect is already the newest version (7.5.0-1). python3-inflect set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1+b2). rpcsvc-proto set to manually installed. binutils is already the newest version (2.46-3). binutils set to manually installed. libmd0 is already the newest version (1.1.0-2+b2). libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. make is already the newest version (4.4.1-3+b1). make set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev set to manually installed. libgprofng0 is already the newest version (2.46-3). libgprofng0 set to manually installed. libtool is already the newest version (2.5.4-11). libtool set to manually installed. libpython3-all-dev is already the newest version (3.13.9-3). libpython3-all-dev set to manually installed. libcrypt1 is already the newest version (1:4.5.1-1+b1). python3-jaraco.context is already the newest version (6.0.1-2). python3-jaraco.context set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. python3.13-minimal is already the newest version (3.13.12-1). python3.13-minimal set to manually installed. libasan8 is already the newest version (16-20260322-1). libasan8 set to manually installed. libacl1 is already the newest version (2.3.2-3). libubsan1 is already the newest version (16-20260322-1). libubsan1 set to manually installed. libdebconfclient0 is already the newest version (0.282+b2). libisl23 is already the newest version (0.27-2). libisl23 set to manually installed. tzdata is already the newest version (2026a-3). tzdata set to manually installed. file is already the newest version (1:5.46-5+b1). file set to manually installed. libjs-sphinxdoc is already the newest version (8.2.3-12). libjs-sphinxdoc set to manually installed. libtsan2 is already the newest version (16-20260322-1). libtsan2 set to manually installed. mawk is already the newest version (1.3.4.20260302-1). cpp-15 is already the newest version (15.2.0-16). cpp-15 set to manually installed. bsdextrautils is already the newest version (2.42-4). bsdextrautils set to manually installed. diffutils is already the newest version (1:3.12-1+b1). libjansson4 is already the newest version (2.14-2+b4). libjansson4 set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. libpam-modules is already the newest version (1.7.0-5+b1). libatomic1 is already the newest version (16-20260322-1). libatomic1 set to manually installed. libpython3.14-dev is already the newest version (3.14.4-2). libpython3.14-dev set to manually installed. libcc1-0 is already the newest version (16-20260322-1). libcc1-0 set to manually installed. libsframe3 is already the newest version (2.46-3). libsframe3 set to manually installed. cpp is already the newest version (4:15.2.0-5). cpp set to manually installed. libc6 is already the newest version (2.42-15). coreutils is already the newest version (9.10-1). libpython3.13-dev is already the newest version (3.13.12-1). libpython3.13-dev set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5+b1). libctf-nobfd0 is already the newest version (2.46-3). libctf-nobfd0 set to manually installed. perl-base is already the newest version (5.40.1-7+b1). libstdc++-15-dev is already the newest version (15.2.0-16). libstdc++-15-dev set to manually installed. patch is already the newest version (2.8-2+b1). patch set to manually installed. libboost1.90-dev is already the newest version (1.90.0-6). libboost1.90-dev set to manually installed. gcc is already the newest version (4:15.2.0-5). gcc set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. sed is already the newest version (4.9-3). sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. gettext-base is already the newest version (0.23.2-2). gettext-base set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1+b1). libgdbm-compat4t64 set to manually installed. libblas3 is already the newest version (3.12.1-7+b1). libblas3 set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. libdebhelper-perl is already the newest version (13.31). libdebhelper-perl set to manually installed. libgcc-s1 is already the newest version (16-20260322-1). xz-utils is already the newest version (5.8.3-1). xz-utils set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.2-3). dpkg is already the newest version (1.23.7). libcap-ng0 is already the newest version (0.9.3-1). libboost-dev is already the newest version (1.90.0.2). libboost-dev set to manually installed. libpython3-stdlib is already the newest version (3.13.9-3). libpython3-stdlib set to manually installed. libsimde-dev is already the newest version (0.8.4~rc3-5). libsimde-dev set to manually installed. liblsan0 is already the newest version (16-20260322-1). liblsan0 set to manually installed. libreadline8t64 is already the newest version (8.3-4). libreadline8t64 set to manually installed. libmount1 is already the newest version (2.42-4). libstdc++6 is already the newest version (16-20260322-1). libstdc++6 set to manually installed. gcc-15-aarch64-linux-gnu is already the newest version (15.2.0-16). gcc-15-aarch64-linux-gnu set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). libpipeline1 is already the newest version (1.5.8-3). libpipeline1 set to manually installed. architecture-properties is already the newest version (0.2.6+b2). architecture-properties set to manually installed. autoconf is already the newest version (2.72-6). autoconf set to manually installed. python3-numpy is already the newest version (1:2.3.5+ds-3). python3-numpy set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-7). perl-modules-5.40 set to manually installed. perl is already the newest version (5.40.1-7+b1). perl set to manually installed. libudev1 is already the newest version (260.1-1). intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. sysvinit-utils is already the newest version (3.18-1). libgfortran5 is already the newest version (16-20260322-1). libgfortran5 set to manually installed. libselinux1 is already the newest version (3.10-1). groff-base is already the newest version (1.24.1-1). groff-base set to manually installed. libctf0 is already the newest version (2.46-3). libctf0 set to manually installed. gettext is already the newest version (0.23.2-2). gettext set to manually installed. openssl-provider-legacy is already the newest version (3.6.2-1). libpython3-dev is already the newest version (3.13.9-3). libpython3-dev set to manually installed. libsmartcols1 is already the newest version (2.42-4). python3-typing-extensions is already the newest version (4.15.0-2). python3-typing-extensions set to manually installed. libaudit1 is already the newest version (1:4.1.2-1+b1). po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5+b1). libpython3.14-minimal is already the newest version (3.14.4-2). libpython3.14-minimal set to manually installed. libuuid1 is already the newest version (2.42-4). dpkg-dev is already the newest version (1.23.7). dpkg-dev set to manually installed. libunistring5 is already the newest version (1.4.2-1). libunistring5 set to manually installed. debhelper is already the newest version (13.31). debhelper set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. ncurses-base is already the newest version (6.6+20251231-1). gzip is already the newest version (1.13-1+b1). libgcc-15-dev is already the newest version (15.2.0-16). libgcc-15-dev set to manually installed. tar is already the newest version (1.35+dfsg-4). libattr1 is already the newest version (1:2.5.2-4). base-passwd is already the newest version (3.6.8+b1). cpp-15-aarch64-linux-gnu is already the newest version (15.2.0-16). cpp-15-aarch64-linux-gnu set to manually installed. grep is already the newest version (3.12-1+b1). liblapack3 is already the newest version (3.12.1-7+b1). liblapack3 set to manually installed. libpython3.13 is already the newest version (3.13.12-1). libpython3.13 set to manually installed. automake is already the newest version (1:1.18.1-4). automake set to manually installed. util-linux is already the newest version (2.42-4). dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. gcc-15-base is already the newest version (15.2.0-16). gcc-15-base set to manually installed. python3-pkg-resources is already the newest version (78.1.1-0.1). python3-pkg-resources set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6+b1). libblkid1 is already the newest version (2.42-4). bash is already the newest version (5.3-2). libhwasan0 is already the newest version (16-20260322-1). libhwasan0 set to manually installed. m4 is already the newest version (1.4.21-1). m4 set to manually installed. dh-exec is already the newest version (0.31). dh-exec set to manually installed. libgomp1 is already the newest version (16-20260322-1). libgomp1 set to manually installed. findutils is already the newest version (4.10.0-3+b1). libc-bin is already the newest version (2.42-15). python3.14-minimal is already the newest version (3.14.4-2). python3.14-minimal set to manually installed. bzip2 is already the newest version (1.0.8-6+b1). bzip2 set to manually installed. python3.13 is already the newest version (3.13.12-1). python3.13 set to manually installed. libtinfo6 is already the newest version (6.6+20251231-1). libssl3t64 is already the newest version (3.6.2-1). linux-libc-dev is already the newest version (6.19.13-1). linux-libc-dev set to manually installed. libncursesw6 is already the newest version (6.6+20251231-1). libncursesw6 set to manually installed. man-db is already the newest version (2.13.1-1+b1). man-db set to manually installed. gcc-16-base is already the newest version (16-20260322-1). python3-more-itertools is already the newest version (10.8.0-1). python3-more-itertools set to manually installed. python3-numpy-dev is already the newest version (1:2.3.5+ds-3). python3-numpy-dev set to manually installed. g++ is already the newest version (4:15.2.0-5). g++ set to manually installed. libmagic-mgc is already the newest version (1:5.46-5+b1). libmagic-mgc set to manually installed. g++-aarch64-linux-gnu is already the newest version (4:15.2.0-5). g++-aarch64-linux-gnu set to manually installed. python3.14 is already the newest version (3.14.4-2). python3.14 set to manually installed. python3.13-dev is already the newest version (3.13.12-1). python3.13-dev set to manually installed. liblzma5 is already the newest version (5.8.3-1). libpython3.14-stdlib is already the newest version (3.14.4-2). libpython3.14-stdlib set to manually installed. libc6-dev is already the newest version (2.42-15). libc6-dev set to manually installed. libseccomp2 is already the newest version (2.6.0-2+b1). libseccomp2 set to manually installed. cpp-aarch64-linux-gnu is already the newest version (4:15.2.0-5). cpp-aarch64-linux-gnu set to manually installed. binutils-aarch64-linux-gnu is already the newest version (2.46-3). binutils-aarch64-linux-gnu set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-11+b1). libbinutils is already the newest version (2.46-3). libbinutils set to manually installed. gcc-aarch64-linux-gnu is already the newest version (4:15.2.0-5). gcc-aarch64-linux-gnu set to manually installed. libexpat1 is already the newest version (2.7.5-1). libexpat1 set to manually installed. python3-autocommand is already the newest version (2.2.2-4). python3-autocommand set to manually installed. libpython3.13-stdlib is already the newest version (3.13.12-1). libpython3.13-stdlib set to manually installed. libpython3.13-minimal is already the newest version (3.13.12-1). libpython3.13-minimal set to manually installed. libc-gconv-modules-extra is already the newest version (2.42-15). python3-typeguard is already the newest version (4.4.4-2). python3-typeguard set to manually installed. libuchardet0 is already the newest version (0.0.8-2+b1). libuchardet0 set to manually installed. dwz is already the newest version (0.16-4). dwz set to manually installed. libperl5.40 is already the newest version (5.40.1-7+b1). libperl5.40 set to manually installed. python3-dev is already the newest version (3.13.9-3). python3-dev set to manually installed. hostname is already the newest version (3.25+b1). python3-minimal is already the newest version (3.13.9-3). python3-minimal set to manually installed. libmagic1t64 is already the newest version (1:5.46-5+b1). libmagic1t64 set to manually installed. libxml2-16 is already the newest version (2.15.2+dfsg-0.1). libxml2-16 set to manually installed. ncurses-bin is already the newest version (6.6+20251231-1). python3-zipp is already the newest version (3.23.0-1). python3-zipp set to manually installed. g++-15-aarch64-linux-gnu is already the newest version (15.2.0-16). g++-15-aarch64-linux-gnu set to manually installed. autotools-dev is already the newest version (20240727.1+nmu1). autotools-dev set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libgdbm6t64 is already the newest version (1.26-1+b1). libgdbm6t64 set to manually installed. python3-setuptools is already the newest version (78.1.1-0.1). python3-setuptools set to manually installed. debconf is already the newest version (1.5.92). libitm1 is already the newest version (16-20260322-1). libitm1 set to manually installed. debianutils is already the newest version (5.23.2+b1). libffi8 is already the newest version (3.5.2-4). libffi8 set to manually installed. libdpkg-perl is already the newest version (1.23.7). libdpkg-perl set to manually installed. libpython3.14 is already the newest version (3.14.4-2). libpython3.14 set to manually installed. init-system-helpers is already the newest version (1.69). libpam-runtime is already the newest version (1.7.0-5). python3-all-dev is already the newest version (3.13.9-3). python3-all-dev set to manually installed. libexpat1-dev is already the newest version (2.7.5-1). libexpat1-dev set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-3+b1). dh-python is already the newest version (7.20260309). dh-python set to manually installed. python3-all is already the newest version (3.13.9-3). python3-all set to manually installed. gcc-15 is already the newest version (15.2.0-16). gcc-15 set to manually installed. libpam0g is already the newest version (1.7.0-5+b1). dash is already the newest version (0.5.12-12+b1). python3 is already the newest version (3.13.9-3). python3 set to manually installed. libc-dev-bin is already the newest version (2.42-15). libc-dev-bin set to manually installed. autopoint is already the newest version (0.23.2-2). autopoint set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.sS5Rb0HfMV (Reading database ... 37058 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.sS5Rb0HfMV I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.sS5Rb0HfMV I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.sS5Rb0HfMV... I: success in 100.4108 seconds Downloading dependency 133 of 196: python3.13:arm64=3.13.12-1 Downloading dependency 134 of 196: libtinfo6:arm64=6.6+20251231-1 Downloading dependency 135 of 196: libssl3t64:arm64=3.6.2-1 Downloading dependency 136 of 196: linux-libc-dev:arm64=6.19.13-1 Downloading dependency 137 of 196: libncursesw6:arm64=6.6+20251231-1 Downloading dependency 138 of 196: man-db:arm64=2.13.1-1+b1 Downloading dependency 139 of 196: gcc-16-base:arm64=16-20260322-1 Downloading dependency 140 of 196: python3-more-itertools:arm64=10.8.0-1 Downloading dependency 141 of 196: python3-numpy-dev:arm64=1:2.3.5+ds-3 Downloading dependency 142 of 196: g++:arm64=4:15.2.0-5 Downloading dependency 143 of 196: libmagic-mgc:arm64=1:5.46-5+b1 Downloading dependency 144 of 196: g++-aarch64-linux-gnu:arm64=4:15.2.0-5 Downloading dependency 145 of 196: python3.14:arm64=3.14.4-2 Downloading dependency 146 of 196: python3.13-dev:arm64=3.13.12-1 Downloading dependency 147 of 196: liblzma5:arm64=5.8.3-1 Downloading dependency 148 of 196: libpython3.14-stdlib:arm64=3.14.4-2 Downloading dependency 149 of 196: libc6-dev:arm64=2.42-15 Downloading dependency 150 of 196: libseccomp2:arm64=2.6.0-2+b1 Downloading dependency 151 of 196: cpp-aarch64-linux-gnu:arm64=4:15.2.0-5 Downloading dependency 152 of 196: binutils-aarch64-linux-gnu:arm64=2.46-3 Downloading dependency 153 of 196: libdb5.3t64:arm64=5.3.28+dfsg2-11+b1 Downloading dependency 154 of 196: libbinutils:arm64=2.46-3 Downloading dependency 155 of 196: gcc-aarch64-linux-gnu:arm64=4:15.2.0-5 Downloading dependency 156 of 196: libexpat1:arm64=2.7.5-1 Downloading dependency 157 of 196: python3-autocommand:arm64=2.2.2-4 Downloading dependency 158 of 196: libpython3.13-stdlib:arm64=3.13.12-1 Downloading dependency 159 of 196: libpython3.13-minimal:arm64=3.13.12-1 Downloading dependency 160 of 196: libc-gconv-modules-extra:arm64=2.42-15 Downloading dependency 161 of 196: python3-typeguard:arm64=4.4.4-2 Downloading dependency 162 of 196: libuchardet0:arm64=0.0.8-2+b1 Downloading dependency 163 of 196: dwz:arm64=0.16-4 Downloading dependency 164 of 196: libperl5.40:arm64=5.40.1-7+b1 Downloading dependency 165 of 196: python3-dev:arm64=3.13.9-3 Downloading dependency 166 of 196: hostname:arm64=3.25+b1 Downloading dependency 167 of 196: python3-minimal:arm64=3.13.9-3 Downloading dependency 168 of 196: libmagic1t64:arm64=1:5.46-5+b1 Downloading dependency 169 of 196: libxml2-16:arm64=2.15.2+dfsg-0.1 Downloading dependency 170 of 196: ncurses-bin:arm64=6.6+20251231-1 Downloading dependency 171 of 196: python3-zipp:arm64=3.23.0-1 Downloading dependency 172 of 196: g++-15-aarch64-linux-gnu:arm64=15.2.0-16 Downloading dependency 173 of 196: autotools-dev:arm64=20240727.1+nmu1 Downloading dependency 174 of 196: libarchive-zip-perl:arm64=1.68-1 Downloading dependency 175 of 196: libgdbm6t64:arm64=1.26-1+b1 Downloading dependency 176 of 196: python3-setuptools:arm64=78.1.1-0.1 Downloading dependency 177 of 196: debconf:arm64=1.5.92 Downloading dependency 178 of 196: libitm1:arm64=16-20260322-1 Downloading dependency 179 of 196: debianutils:arm64=5.23.2+b1 Downloading dependency 180 of 196: libffi8:arm64=3.5.2-4 Downloading dependency 181 of 196: libdpkg-perl:arm64=1.23.7 Downloading dependency 182 of 196: libpython3.14:arm64=3.14.4-2 Downloading dependency 183 of 196: init-system-helpers:arm64=1.69 Downloading dependency 184 of 196: libpam-runtime:arm64=1.7.0-5 Downloading dependency 185 of 196: python3-all-dev:arm64=3.13.9-3 Downloading dependency 186 of 196: libexpat1-dev:arm64=2.7.5-1 Downloading dependency 187 of 196: python3-jaraco.text:arm64=4.0.0-1 Downloading dependency 188 of 196: libzstd1:arm64=1.5.7+dfsg-3+b1 Downloading dependency 189 of 196: dh-python:arm64=7.20260309 Downloading dependency 190 of 196: python3-all:arm64=3.13.9-3 Downloading dependency 191 of 196: gcc-15:arm64=15.2.0-16 Downloading dependency 192 of 196: libpam0g:arm64=1.7.0-5+b1 Downloading dependency 193 of 196: dash:arm64=0.5.12-12+b1 Downloading dependency 194 of 196: python3:arm64=3.13.9-3 Downloading dependency 195 of 196: libc-dev-bin:arm64=2.42-15 Downloading dependency 196 of 196: autopoint:arm64=0.23.2-2 env --chdir=/srv/rebuilderd/tmp/rebuilderdNGbS7W/out DEB_BUILD_OPTIONS=parallel=8 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1776943121 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuild2B_7WY/debrebuild.sbuildrc.xYc1ZPYJoc0X sbuild --build=arm64 --host=arm64 --arch-any --no-arch-all --binNMU-changelog= consensuscore (1.1.1+dfsg-9+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for arm64; no source changes. * Rebuild on buildd for loong64 -- arm Build Daemon (arm-ubc-04) Thu, 23 Apr 2026 11:18:41 +0000 --chroot=/srv/rebuilderd/tmp/debrebuild2B_7WY/debrebuild.tar.SKSN9xUKRsPL --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --no-source --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=consensuscore-1.1.1+dfsg /srv/rebuilderd/tmp/rebuilderdNGbS7W/inputs/consensuscore_1.1.1+dfsg-9.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on codethink02-arm64 +==============================================================================+ | consensuscore 1.1.1+dfsg-9+b1 (arm64) Thu, 07 May 2026 05:28:08 +0000 | +==============================================================================+ Package: consensuscore Version: 1.1.1+dfsg-9+b1 Source Version: 1.1.1+dfsg-9 Distribution: unstable Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuild2B_7WY/debrebuild.tar.SKSN9xUKRsPL to /srv/rebuilderd/tmp/tmp.sbuild.jIvli0nuX8... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Thu, 07 May 2026 05:28:22 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdNGbS7W/inputs/consensuscore_1.1.1+dfsg-9.dsc exists in /srv/rebuilderd/tmp/rebuilderdNGbS7W/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 07 May 2026 05:28:25 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, architecture-is-64-bit, architecture-is-little-endian, libboost-dev, libsimde-dev, python3-all-dev, python3-numpy, python3-numpy-dev, python3-setuptools, swig, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, architecture-is-64-bit, architecture-is-little-endian, libboost-dev, libsimde-dev, python3-all-dev, python3-numpy, python3-numpy-dev, python3-setuptools, swig, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-vBP7cm/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Thu, 07 May 2026 05:28:32 +0000 | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment Thu, 07 May 2026 05:28:32 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.85+deb13-cloud-arm64 #1 SMP Debian 6.12.85-1 (2026-04-30) arm64 (aarch64) Toolchain package versions: binutils_2.46-3 dpkg-dev_1.23.7 g++-15_15.2.0-16 gcc-15_15.2.0-16 libc6-dev_2.42-15 libstdc++-15-dev_15.2.0-16 libstdc++6_16-20260322-1 linux-libc-dev_6.19.13-1 Package versions: architecture-properties_0.2.6+b2 autoconf_2.72-6 automake_1:1.18.1-4 autopoint_0.23.2-2 autotools-dev_20240727.1+nmu1 base-files_14 base-passwd_3.6.8+b1 bash_5.3-2 binutils_2.46-3 binutils-aarch64-linux-gnu_2.46-3 binutils-common_2.46-3 bsdextrautils_2.42-4 build-essential_12.12 bzip2_1.0.8-6+b1 coreutils_9.10-1 cpp_4:15.2.0-5 cpp-15_15.2.0-16 cpp-15-aarch64-linux-gnu_15.2.0-16 cpp-aarch64-linux-gnu_4:15.2.0-5 dash_0.5.12-12+b1 debconf_1.5.92 debhelper_13.31 debianutils_5.23.2+b1 dh-autoreconf_22 dh-exec_0.31 dh-python_7.20260309 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1+b1 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 file_1:5.46-5+b1 findutils_4.10.0-3+b1 g++_4:15.2.0-5 g++-15_15.2.0-16 g++-15-aarch64-linux-gnu_15.2.0-16 g++-aarch64-linux-gnu_4:15.2.0-5 gcc_4:15.2.0-5 gcc-15_15.2.0-16 gcc-15-aarch64-linux-gnu_15.2.0-16 gcc-15-base_15.2.0-16 gcc-16-base_16-20260322-1 gcc-aarch64-linux-gnu_4:15.2.0-5 gettext_0.23.2-2 gettext-base_0.23.2-2 grep_3.12-1+b1 groff-base_1.24.1-1 gzip_1.13-1+b1 hostname_3.25+b1 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-3 libarchive-zip-perl_1.68-1 libasan8_16-20260322-1 libatomic1_16-20260322-1 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46-3 libblas3_3.12.1-7+b1 libblkid1_2.42-4 libboost-dev_1.90.0.2 libboost1.90-dev_1.90.0-6 libbz2-1.0_1.0.8-6+b1 libc-bin_2.42-15 libc-dev-bin_2.42-15 libc-gconv-modules-extra_2.42-15 libc6_2.42-15 libc6-dev_2.42-15 libcap-ng0_0.9.3-1 libcc1-0_16-20260322-1 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.46-3 libctf0_2.46-3 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.282+b2 libdebhelper-perl_13.31 libdpkg-perl_1.23.7 libelf1t64_0.195-1 libexpat1_2.7.5-1 libexpat1-dev_2.7.5-1 libffi8_3.5.2-4 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-16 libgcc-s1_16-20260322-1 libgdbm-compat4t64_1.26-1+b1 libgdbm6t64_1.26-1+b1 libgfortran5_16-20260322-1 libgmp10_2:6.3.0+dfsg-5+b1 libgomp1_16-20260322-1 libgprofng0_2.46-3 libhwasan0_16-20260322-1 libisl23_0.27-2 libitm1_16-20260322-1 libjansson4_2.14-2+b4 libjs-sphinxdoc_8.2.3-12 liblapack3_3.12.1-7+b1 liblsan0_16-20260322-1 liblzma5_5.8.3-1 libmagic-mgc_1:5.46-5+b1 libmagic1t64_1:5.46-5+b1 libmd0_1.1.0-2+b2 libmount1_2.42-4 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20251231-1 libpam-modules_1.7.0-5+b1 libpam-modules-bin_1.7.0-5+b1 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5+b1 libpcre2-8-0_10.46-1+b1 libperl5.40_5.40.1-7+b1 libpipeline1_1.5.8-3 libpython3-all-dev_3.13.9-3 libpython3-dev_3.13.9-3 libpython3-stdlib_3.13.9-3 libpython3.13_3.13.12-1 libpython3.13-dev_3.13.12-1 libpython3.13-minimal_3.13.12-1 libpython3.13-stdlib_3.13.12-1 libpython3.14_3.14.4-2 libpython3.14-dev_3.14.4-2 libpython3.14-minimal_3.14.4-2 libpython3.14-stdlib_3.14.4-2 libreadline8t64_8.3-4 libseccomp2_2.6.0-2+b1 libselinux1_3.10-1 libsframe3_2.46-3 libsimde-dev_0.8.4~rc3-5 libsmartcols1_2.42-4 libsqlite3-0_3.46.1-9+b1 libssl3t64_3.6.2-1 libstdc++-15-dev_15.2.0-16 libstdc++6_16-20260322-1 libsystemd0_260.1-1 libtinfo6_6.6+20251231-1 libtool_2.5.4-11 libtsan2_16-20260322-1 libubsan1_16-20260322-1 libuchardet0_0.0.8-2+b1 libudev1_260.1-1 libunistring5_1.4.2-1 libuuid1_2.42-4 libxml2-16_2.15.2+dfsg-0.1 libzstd1_1.5.7+dfsg-3+b1 linux-libc-dev_6.19.13-1 m4_1.4.21-1 make_4.4.1-3+b1 man-db_2.13.1-1+b1 mawk_1.3.4.20260302-1 media-types_14.0.0 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1 netbase_6.5 openssl-provider-legacy_3.6.2-1 patch_2.8-2+b1 perl_5.40.1-7+b1 perl-base_5.40.1-7+b1 perl-modules-5.40_5.40.1-7 po-debconf_1.0.22 python3_3.13.9-3 python3-all_3.13.9-3 python3-all-dev_3.13.9-3 python3-autocommand_2.2.2-4 python3-dev_3.13.9-3 python3-inflect_7.5.0-1 python3-jaraco.context_6.0.1-2 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-minimal_3.13.9-3 python3-more-itertools_10.8.0-1 python3-numpy_1:2.3.5+ds-3 python3-numpy-dev_1:2.3.5+ds-3 python3-pkg-resources_78.1.1-0.1 python3-setuptools_78.1.1-0.1 python3-typeguard_4.4.4-2 python3-typing-extensions_4.15.0-2 python3-zipp_3.23.0-1 python3.13_3.13.12-1 python3.13-dev_3.13.12-1 python3.13-minimal_3.13.12-1 python3.14_3.14.4-2 python3.14-dev_3.14.4-2 python3.14-minimal_3.14.4-2 readline-common_8.3-4 rpcsvc-proto_1.4.3-1+b2 sed_4.9-3 sensible-utils_0.0.26 swig_4.4.1-2 sysvinit-utils_3.18-1 tar_1.35+dfsg-4 tzdata_2026a-3 util-linux_2.42-4 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Thu, 07 May 2026 05:28:32 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: consensuscore Binary: libconsensuscore-dev, python3-pbconsensuscore Architecture: any Version: 1.1.1+dfsg-9 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Homepage: https://github.com/PacificBiosciences/ConsensusCore Standards-Version: 4.7.3 Vcs-Browser: https://salsa.debian.org/med-team/consensuscore Vcs-Git: https://salsa.debian.org/med-team/consensuscore.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, architecture-is-64-bit [!i386], architecture-is-little-endian, libboost-dev, libsimde-dev, python3-all-dev, python3-numpy, python3-numpy-dev, python3-setuptools, swig Package-List: libconsensuscore-dev deb libdevel optional arch=any python3-pbconsensuscore deb python optional arch=any Checksums-Sha1: 06118ce273ef10180336ab071fd86dc60aea7168 363936 consensuscore_1.1.1+dfsg.orig.tar.xz ac12995d4ce310fb671f720f1229e09aef7f26c2 10340 consensuscore_1.1.1+dfsg-9.debian.tar.xz Checksums-Sha256: 47865e3769e2d6647003f70ffce68f8a5b2f69a6ae04ff27d106b3ec84660d82 363936 consensuscore_1.1.1+dfsg.orig.tar.xz 4db0ae878e268792a962af9d1bc855fe16811c67404673045a7ef2dabe5f458e 10340 consensuscore_1.1.1+dfsg-9.debian.tar.xz Files: 17991299008d1c01e25ce3984b7fe7bd 363936 consensuscore_1.1.1+dfsg.orig.tar.xz 949772e680d176bd186c5326388ebdcf 10340 consensuscore_1.1.1+dfsg-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmlgqxwRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBp7ZhAAvUnjkG3krPpq/gREqdP+b35fjw3OJN8w e0Y94gfMgaqrEBcSAtHOKjMkJQ5GchDLdu88C6OAO2OyIV58rDXaWHYq8YU5RmVK 57GZKb/B4viGxZXtcwyMPz4abCD92wk0FFvQR0h+uFpcAttSM3PF2zdzghFWyu0G DFsphVof8qwd9IhUr48XwAvcMj1RMW5PkJl/6WNblKsMtc82cgpCf6GkZkVhZmQJ 1WeqZHyGl6BQrr3O1dZ0DFBXOpvyaEyZ+I/FbYEgXJu9B0SrKMRBoXhkSUxv4DJk 1Cyh2VwJMIpFwydbaWWHuCCo7iub7D4Oqh4PN7CBdfdoHa2hh7WRIGPdjQqr3MQz 5NZTm1Hmc2iRYHw6pyAgtJz44s27u2GYPMUWOQhHzj1vJsKK5AmGlfVNgq5EjG9b lR0Aef/hgCJGJHk9I2pE36DvnBaCXf4C1wW2Yk6GzTVsB0wZjI/r/qeYEZI8EWGu MIxfTmvoLjQAxp2ZLNoTgm16zPPDkRtk1V+OCRrjkvQFzK7QFfam03TSmf4/vp/B w2ePIh1elkHuy6XEEQzeVLFzcb7x+bceLu+tnp6GOJizQsMMV97A0gBtxd9qio05 wAi85Ot7AxA3xloDHrDM4GqhM+3+aeV2UD+WFwWdG8r92Pe6p0E5LO2h5IXqsogy noTyYyFm1uc= =ecdP -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./consensuscore_1.1.1+dfsg-9.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./consensuscore_1.1.1+dfsg-9.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting consensuscore in /build/reproducible-path/consensuscore-1.1.1+dfsg dpkg-source: info: unpacking consensuscore_1.1.1+dfsg.orig.tar.xz dpkg-source: info: unpacking consensuscore_1.1.1+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying check_boost_version.patch dpkg-source: info: applying sequence_setuptools.patch dpkg-source: info: applying portable_simd.patch Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 1.1.1+dfsg-9+b1 User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1776943121 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package consensuscore dpkg-buildpackage: info: source version 1.1.1+dfsg-9+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by arm Build Daemon (arm-ubc-04) dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild debian/rules execute_before_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' ! test -f src/SWIG/numpy.i.orig || mv -v src/SWIG/numpy.i.orig src/SWIG/numpy.i make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_auto_clean -O--buildsystem=pybuild I: pybuild base:385: python3.14 setup.py clean WARNING: '' not a valid package name; please use only .-separated package names in setup.py running clean removing '/build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.14' does not exist -- can't clean it I: pybuild base:385: python3.13 setup.py clean WARNING: '' not a valid package name; please use only .-separated package names in setup.py running clean removing '/build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.13_pbconsensuscore/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:385: python3.14 setup.py config WARNING: '' not a valid package name; please use only .-separated package names in setup.py running config I: pybuild base:385: python3.13 setup.py config WARNING: '' not a valid package name; please use only .-separated package names in setup.py running config debian/rules execute_before_dh_auto_build make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' test -f src/SWIG/numpy.i.orig || mv -v src/SWIG/numpy.i src/SWIG/numpy.i.orig renamed 'src/SWIG/numpy.i' -> 'src/SWIG/numpy.i.orig' cp /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/numpy.i src/SWIG/numpy.i make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:385: /usr/bin/python3.14 setup.py build WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig/4.4.1 PYTHON_INCLUDE = /usr/include/python3.14 NUMPY_INCLUDE = /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Cpp.mk -j8 make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaGraphImpl.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaConsensus.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaGraph.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaGraphTraversals.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/RangeFinder.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Statistics/Binomial.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Matrix/SparseMatrix.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Matrix/DenseMatrix.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.o -MM src/C++/Poa/PoaConsensus.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Read.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.o -MM src/C++/Matrix/SparseMatrix.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Features.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.o -MM src/C++/Matrix/DenseMatrix.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Version.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.o -MM src/C++/Poa/PoaGraph.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Edna/EdnaCounts.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.o -MM src/C++/Features.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Checksum.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.o In file included from /usr/include/simde/x86/sse3.h:36, from src/C++/Edna/EdnaCounts.cpp:4: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/simde/x86/sse3.h:37: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.o -MM src/C++/Version.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/PairwiseAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.o -MM src/C++/Read.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.o -MM src/C++/Edna/EdnaCounts.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/AffineAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/LinearAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.o -MM src/C++/Statistics/Binomial.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.o -MM src/C++/Poa/RangeFinder.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/AlignConfig.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o -MM src/C++/Align/AlignConfig.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/QuiverConsensus.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/detail/RecursorBase.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.o -MM src/C++/Align/PairwiseAlignment.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.o -MM src/C++/Align/LinearAlignment.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.o -MM src/C++/Align/AffineAlignment.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/MutationEnumerator.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/ReadScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/QuiverConfig.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.o In file included from /usr/include/simde/x86/sse3.h:36, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Edna/EdnaEvaluator.hpp:6, from src/C++/Quiver/detail/RecursorBase.cpp:6: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/simde/x86/sse3.h:37: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:5, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/MutationScorer.hpp:12, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/MultiReadMutationScorer.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/QuiverConsensus.hpp:6, from src/C++/Quiver/QuiverConsensus.cpp:3: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/simde/x86/sse3.h:37, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/QvEvaluator.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:6: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.o -MM src/C++/Poa/PoaGraphTraversals.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.o -MM src/C++/Checksum.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/MultiReadMutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/SimpleRecursor.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.o -MM src/C++/Quiver/MutationEnumerator.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.o -MM src/C++/Quiver/QuiverConfig.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.d In file included from /usr/include/simde/x86/sse3.h:36, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/QvEvaluator.hpp:6, from src/C++/Quiver/ReadScorer.cpp:7: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/simde/x86/sse3.h:37: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/SseRecursor.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/Diploid.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.o In file included from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:5, from src/C++/Quiver/SimpleRecursor.cpp:3: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/simde/x86/sse3.h:37, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/QvEvaluator.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:6: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:5, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/MutationScorer.hpp:12, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/MultiReadMutationScorer.hpp:6, from src/C++/Quiver/MultiReadMutationScorer.cpp:5: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/simde/x86/sse3.h:37, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/QvEvaluator.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:6: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.o -MM src/C++/Quiver/Diploid.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.o -MM src/C++/Quiver/ReadScorer.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/MutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Feature.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.o -MM src/C++/Quiver/detail/RecursorBase.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.d In file included from /usr/include/simde/x86/sse3.h:36, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Edna/EdnaEvaluator.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SseRecursor.hpp:5, from src/C++/Quiver/SseRecursor.cpp:3: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/simde/x86/sse3.h:37: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Logging/Logging.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.o -MM src/C++/Logging/Logging.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Sequence.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.o -MM src/C++/Feature.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.o -MM src/C++/Sequence.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Coverage.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Mutation.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.o In file included from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:5, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/MutationScorer.hpp:12, from src/C++/Quiver/MutationScorer.cpp:3: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/simde/x86/sse3.h:37, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/QvEvaluator.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:6: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SimpleRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:190:16: required from here 190 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:191:16: required from here 191 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SimpleRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:192:16: required from here 192 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SimpleRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:193:16: required from here 193 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:194:16: required from here 194 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:195:16: required from here 195 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::EdnaEvaluator]’: src/C++/Quiver/MutationScorer.cpp:196:16: required from here 196 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.o -MM src/C++/Coverage.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Utils.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.o -MM src/C++/Utils.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.o -MM src/C++/Quiver/QuiverConsensus.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.o -MM src/C++/Poa/PoaGraphImpl.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.o -MM src/C++/Quiver/MultiReadMutationScorer.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.o -MM src/C++/Quiver/MutationScorer.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.o -MM src/C++/Mutation.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.o -MM src/C++/Quiver/SimpleRecursor.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.o -MM src/C++/Quiver/SseRecursor.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.d ar crs /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.o touch /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Python.mk make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.4.1 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.14 -I /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' I: pybuild base:385: /usr/bin/python3 setup.py build WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig/4.4.1 PYTHON_INCLUDE = /usr/include/python3.13 NUMPY_INCLUDE = /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Cpp.mk -j8 make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a' is up to date. make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Python.mk make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.4.1 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.13 -I /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' /usr/bin/make test make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' /usr/bin/make -f make/Cpp.mk -j8 make[3]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[3]: '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a' is up to date. make[3]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[3]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestCoverage.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestCoverage.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMatrixFacades.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMatrixFacades.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestPoaConsensus.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPoaConsensus.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMutationEnumerator.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationEnumerator.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestPairwiseAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPairwiseAlignment.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMultiReadMutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMultiReadMutationScorer.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestRecursors.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestRecursors.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationScorer.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestDiploidQuiver.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestDiploidQuiver.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestSparseVector.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestSparseVector.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMutations.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutations.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestQvEvaluator.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestQvEvaluator.o In file included from /usr/include/boost/bind.hpp:30, from /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestQvEvaluator.cpp:5: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/ParameterSettings.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/ParameterSettings.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestCoverage.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMatrixFacades.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPoaConsensus.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationEnumerator.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPairwiseAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMultiReadMutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestRecursors.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestDiploidQuiver.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestSparseVector.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutations.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestQvEvaluator.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/ParameterSettings.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 /build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0/gmock-gtest-all.cc /build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0/gmock_main.cc -lpthread -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/test-runner GTEST_OUTPUT="xml:tests-summary.xml" /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/test-runner Running main() from gmock_main.cc [==========] Running 158 tests from 29 test cases. [----------] Global test environment set-up. [----------] 3 tests from CoverageTests [ RUN ] CoverageTests.CoverageInWindowTest [ OK ] CoverageTests.CoverageInWindowTest (0 ms) [ RUN ] CoverageTests.CoveredIntervalsTest [ OK ] CoverageTests.CoveredIntervalsTest (0 ms) [ RUN ] CoverageTests.CoveredIntervalsTest2 [ OK ] CoverageTests.CoveredIntervalsTest2 (0 ms) [----------] 3 tests from CoverageTests (0 ms total) [----------] 11 tests from MatrixTest/0, where TypeParam = ConsensusCore::DenseMatrix [ RUN ] MatrixTest/0.Basic [ OK ] MatrixTest/0.Basic (0 ms) [ RUN ] MatrixTest/0.Nullability [ OK ] MatrixTest/0.Nullability (0 ms) [ RUN ] MatrixTest/0.Ranges [ OK ] MatrixTest/0.Ranges (0 ms) [ RUN ] MatrixTest/0.IsColumnEmpty [ OK ] MatrixTest/0.IsColumnEmpty (0 ms) [ RUN ] MatrixTest/0.SSE [ OK ] MatrixTest/0.SSE (0 ms) [ RUN ] MatrixTest/0.ToHostArray [ OK ] MatrixTest/0.ToHostArray (0 ms) [ RUN ] MatrixTest/0.NonSequentialAccess [ OK ] MatrixTest/0.NonSequentialAccess (0 ms) [ RUN ] MatrixTest/0.Holes [ OK ] MatrixTest/0.Holes (0 ms) [ RUN ] MatrixTest/0.BigBandedMatrix N13ConsensusCore11DenseMatrixE : 1000000 [ OK ] MatrixTest/0.BigBandedMatrix (2 ms) [ RUN ] MatrixTest/0.BigIrregularBandedMatrix [ OK ] MatrixTest/0.BigIrregularBandedMatrix (0 ms) [ RUN ] MatrixTest/0.CopyTest [ OK ] MatrixTest/0.CopyTest (0 ms) [----------] 11 tests from MatrixTest/0 (2 ms total) [----------] 11 tests from MatrixTest/1, where TypeParam = ConsensusCore::SparseMatrix [ RUN ] MatrixTest/1.Basic [ OK ] MatrixTest/1.Basic (0 ms) [ RUN ] MatrixTest/1.Nullability [ OK ] MatrixTest/1.Nullability (0 ms) [ RUN ] MatrixTest/1.Ranges [ OK ] MatrixTest/1.Ranges (0 ms) [ RUN ] MatrixTest/1.IsColumnEmpty [ OK ] MatrixTest/1.IsColumnEmpty (0 ms) [ RUN ] MatrixTest/1.SSE [ OK ] MatrixTest/1.SSE (0 ms) [ RUN ] MatrixTest/1.ToHostArray [ OK ] MatrixTest/1.ToHostArray (0 ms) [ RUN ] MatrixTest/1.NonSequentialAccess [ OK ] MatrixTest/1.NonSequentialAccess (0 ms) [ RUN ] MatrixTest/1.Holes [ OK ] MatrixTest/1.Holes (0 ms) [ RUN ] MatrixTest/1.BigBandedMatrix N13ConsensusCore12SparseMatrixE : 1001976 [ OK ] MatrixTest/1.BigBandedMatrix (15 ms) [ RUN ] MatrixTest/1.BigIrregularBandedMatrix [ OK ] MatrixTest/1.BigIrregularBandedMatrix (0 ms) [ RUN ] MatrixTest/1.CopyTest [ OK ] MatrixTest/1.CopyTest (0 ms) [----------] 11 tests from MatrixTest/1 (15 ms total) [----------] 4 tests from PoaGraph [ RUN ] PoaGraph.SmallBasicTest [ OK ] PoaGraph.SmallBasicTest (0 ms) [ RUN ] PoaGraph.SmallExtraTests [ OK ] PoaGraph.SmallExtraTests (0 ms) [ RUN ] PoaGraph.SmallMismatchTests [ OK ] PoaGraph.SmallMismatchTests (1 ms) [ RUN ] PoaGraph.SmallDeletionTests [ OK ] PoaGraph.SmallDeletionTests (0 ms) [----------] 4 tests from PoaGraph (1 ms total) [----------] 8 tests from PoaConsensus [ RUN ] PoaConsensus.TestSimple [ OK ] PoaConsensus.TestSimple (0 ms) [ RUN ] PoaConsensus.TestOverhangSecond [ OK ] PoaConsensus.TestOverhangSecond (0 ms) [ RUN ] PoaConsensus.SmallSemiglobalTest [ OK ] PoaConsensus.SmallSemiglobalTest (0 ms) [ RUN ] PoaConsensus.SmallTilingTest [ OK ] PoaConsensus.SmallTilingTest (0 ms) [ RUN ] PoaConsensus.TestVerboseGraphVizOutput [ OK ] PoaConsensus.TestVerboseGraphVizOutput (1 ms) [ RUN ] PoaConsensus.TestLocalStaggered dot -Tpng local-staggered.dot > local-staggered.png sh: 1: dot: not found [ OK ] PoaConsensus.TestLocalStaggered (17 ms) [ RUN ] PoaConsensus.TestLongInsert [ OK ] PoaConsensus.TestLongInsert (0 ms) [ RUN ] PoaConsensus.NondeterminismRegressionTest [ OK ] PoaConsensus.NondeterminismRegressionTest (1146 ms) [----------] 8 tests from PoaConsensus (1164 ms total) [----------] 4 tests from MutationEnumerationTest [ RUN ] MutationEnumerationTest.TestAllMutations [ OK ] MutationEnumerationTest.TestAllMutations (0 ms) [ RUN ] MutationEnumerationTest.TestUniqueMutations [ OK ] MutationEnumerationTest.TestUniqueMutations (0 ms) [ RUN ] MutationEnumerationTest.TestUniqueNearbyMutations [ OK ] MutationEnumerationTest.TestUniqueNearbyMutations (1 ms) [ RUN ] MutationEnumerationTest.TestDinucleotideMutations [ OK ] MutationEnumerationTest.TestDinucleotideMutations (0 ms) [----------] 4 tests from MutationEnumerationTest (2 ms total) [----------] 3 tests from PairwiseAlignmentTests [ RUN ] PairwiseAlignmentTests.RepresentationTests [ OK ] PairwiseAlignmentTests.RepresentationTests (0 ms) [ RUN ] PairwiseAlignmentTests.GlobalAlignmentTests [ OK ] PairwiseAlignmentTests.GlobalAlignmentTests (0 ms) [ RUN ] PairwiseAlignmentTests.TargetPositionsInQueryTest [ OK ] PairwiseAlignmentTests.TargetPositionsInQueryTest (0 ms) [----------] 3 tests from PairwiseAlignmentTests (0 ms total) [----------] 2 tests from AffineAlignmentTests [ RUN ] AffineAlignmentTests.BasicTests [ OK ] AffineAlignmentTests.BasicTests (0 ms) [ RUN ] AffineAlignmentTests.LargeGapTest [ OK ] AffineAlignmentTests.LargeGapTest (9 ms) [----------] 2 tests from AffineAlignmentTests (10 ms total) [----------] 1 test from IupacAlignmentTests [ RUN ] IupacAlignmentTests.BasicTest [ OK ] IupacAlignmentTests.BasicTest (0 ms) [----------] 1 test from IupacAlignmentTests (0 ms total) [----------] 1 test from LinearAlignmentTests [ RUN ] LinearAlignmentTests.BasicTest [ OK ] LinearAlignmentTests.BasicTest (0 ms) [----------] 1 test from LinearAlignmentTests (0 ms total) [----------] 1 test from QuiverConfigTableTests [ RUN ] QuiverConfigTableTests.IllegalChemistry [ OK ] QuiverConfigTableTests.IllegalChemistry (1 ms) [----------] 1 test from QuiverConfigTableTests (1 ms total) [----------] 3 tests from MutationOrientationTests [ RUN ] MutationOrientationTests.ReadScoresMutation1 [ OK ] MutationOrientationTests.ReadScoresMutation1 (0 ms) [ RUN ] MutationOrientationTests.ReadScoresMutation2 [ OK ] MutationOrientationTests.ReadScoresMutation2 (0 ms) [ RUN ] MutationOrientationTests.OrientedMutation [ OK ] MutationOrientationTests.OrientedMutation (0 ms) [----------] 3 tests from MutationOrientationTests (0 ms total) [----------] 11 tests from MultiReadMutationScorerTest/0, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MultiReadMutationScorerTest/0.Template [ OK ] MultiReadMutationScorerTest/0.Template (0 ms) [ RUN ] MultiReadMutationScorerTest/0.BasicTest [ OK ] MultiReadMutationScorerTest/0.BasicTest (1 ms) [ RUN ] MultiReadMutationScorerTest/0.ManyMutationTest [ OK ] MultiReadMutationScorerTest/0.ManyMutationTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.CopyConstructorTest [ OK ] MultiReadMutationScorerTest/0.CopyConstructorTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.ReverseStrandTest [ OK ] MultiReadMutationScorerTest/0.ReverseStrandTest (1 ms) [ RUN ] MultiReadMutationScorerTest/0.TestMutationsAtBeginning [ OK ] MultiReadMutationScorerTest/0.TestMutationsAtBeginning (1 ms) [ RUN ] MultiReadMutationScorerTest/0.TestMutationsAtEnd [ OK ] MultiReadMutationScorerTest/0.TestMutationsAtEnd (0 ms) [ RUN ] MultiReadMutationScorerTest/0.NonSpanningReadsTest1 [ OK ] MultiReadMutationScorerTest/0.NonSpanningReadsTest1 (0 ms) [ RUN ] MultiReadMutationScorerTest/0.CopyTest [ OK ] MultiReadMutationScorerTest/0.CopyTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.MultiBaseSubstitutionsAtBounds [ OK ] MultiReadMutationScorerTest/0.MultiBaseSubstitutionsAtBounds (1 ms) [ RUN ] MultiReadMutationScorerTest/0.MultiBaseIndelsAtBounds [ OK ] MultiReadMutationScorerTest/0.MultiBaseIndelsAtBounds (0 ms) [----------] 11 tests from MultiReadMutationScorerTest/0 (4 ms total) [----------] 7 tests from RecursorTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorTest/0.SmallMatchTest [ OK ] RecursorTest/0.SmallMatchTest (0 ms) [ RUN ] RecursorTest/0.SmallMismatchTest [ OK ] RecursorTest/0.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/0.SmallMergeTest [ OK ] RecursorTest/0.SmallMergeTest (0 ms) [ RUN ] RecursorTest/0.MediumSizedTest [ OK ] RecursorTest/0.MediumSizedTest (0 ms) [ RUN ] RecursorTest/0.LinkTest [ OK ] RecursorTest/0.LinkTest (0 ms) [ RUN ] RecursorTest/0.ExtendAlphaTest [ OK ] RecursorTest/0.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/0.ExtendBetaTest [ OK ] RecursorTest/0.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/0 (1 ms total) [----------] 7 tests from RecursorTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorTest/1.SmallMatchTest [ OK ] RecursorTest/1.SmallMatchTest (0 ms) [ RUN ] RecursorTest/1.SmallMismatchTest [ OK ] RecursorTest/1.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/1.SmallMergeTest [ OK ] RecursorTest/1.SmallMergeTest (0 ms) [ RUN ] RecursorTest/1.MediumSizedTest [ OK ] RecursorTest/1.MediumSizedTest (2 ms) [ RUN ] RecursorTest/1.LinkTest [ OK ] RecursorTest/1.LinkTest (0 ms) [ RUN ] RecursorTest/1.ExtendAlphaTest [ OK ] RecursorTest/1.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/1.ExtendBetaTest [ OK ] RecursorTest/1.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/1 (3 ms total) [----------] 7 tests from RecursorTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorTest/2.SmallMatchTest [ OK ] RecursorTest/2.SmallMatchTest (0 ms) [ RUN ] RecursorTest/2.SmallMismatchTest [ OK ] RecursorTest/2.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/2.SmallMergeTest [ OK ] RecursorTest/2.SmallMergeTest (0 ms) [ RUN ] RecursorTest/2.MediumSizedTest [ OK ] RecursorTest/2.MediumSizedTest (3 ms) [ RUN ] RecursorTest/2.LinkTest [ OK ] RecursorTest/2.LinkTest (0 ms) [ RUN ] RecursorTest/2.ExtendAlphaTest [ OK ] RecursorTest/2.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/2.ExtendBetaTest [ OK ] RecursorTest/2.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/2 (3 ms total) [----------] 7 tests from RecursorTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorTest/3.SmallMatchTest [ OK ] RecursorTest/3.SmallMatchTest (0 ms) [ RUN ] RecursorTest/3.SmallMismatchTest [ OK ] RecursorTest/3.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/3.SmallMergeTest [ OK ] RecursorTest/3.SmallMergeTest (0 ms) [ RUN ] RecursorTest/3.MediumSizedTest [ OK ] RecursorTest/3.MediumSizedTest (1 ms) [ RUN ] RecursorTest/3.LinkTest [ OK ] RecursorTest/3.LinkTest (1 ms) [ RUN ] RecursorTest/3.ExtendAlphaTest [ OK ] RecursorTest/3.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/3.ExtendBetaTest [ OK ] RecursorTest/3.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/3 (3 ms total) [----------] 5 tests from RecursorFuzzTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorFuzzTest/0.AlphaBetaConcordance [ OK ] RecursorFuzzTest/0.AlphaBetaConcordance (10 ms) [ RUN ] RecursorFuzzTest/0.Alignment [ OK ] RecursorFuzzTest/0.Alignment (11 ms) [ RUN ] RecursorFuzzTest/0.LinkAlphaBeta [ OK ] RecursorFuzzTest/0.LinkAlphaBeta (12 ms) [ RUN ] RecursorFuzzTest/0.ExtendAlpha [ OK ] RecursorFuzzTest/0.ExtendAlpha (12 ms) [ RUN ] RecursorFuzzTest/0.ExtendBeta [ OK ] RecursorFuzzTest/0.ExtendBeta (12 ms) [----------] 5 tests from RecursorFuzzTest/0 (58 ms total) [----------] 5 tests from RecursorFuzzTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorFuzzTest/1.AlphaBetaConcordance [ OK ] RecursorFuzzTest/1.AlphaBetaConcordance (26 ms) [ RUN ] RecursorFuzzTest/1.Alignment [ OK ] RecursorFuzzTest/1.Alignment (27 ms) [ RUN ] RecursorFuzzTest/1.LinkAlphaBeta [ OK ] RecursorFuzzTest/1.LinkAlphaBeta (26 ms) [ RUN ] RecursorFuzzTest/1.ExtendAlpha [ OK ] RecursorFuzzTest/1.ExtendAlpha (12 ms) [ RUN ] RecursorFuzzTest/1.ExtendBeta [ OK ] RecursorFuzzTest/1.ExtendBeta (12 ms) [----------] 5 tests from RecursorFuzzTest/1 (104 ms total) [----------] 5 tests from RecursorFuzzTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorFuzzTest/2.AlphaBetaConcordance [ OK ] RecursorFuzzTest/2.AlphaBetaConcordance (42 ms) [ RUN ] RecursorFuzzTest/2.Alignment [ OK ] RecursorFuzzTest/2.Alignment (42 ms) [ RUN ] RecursorFuzzTest/2.LinkAlphaBeta [ OK ] RecursorFuzzTest/2.LinkAlphaBeta (50 ms) [ RUN ] RecursorFuzzTest/2.ExtendAlpha [ OK ] RecursorFuzzTest/2.ExtendAlpha (14 ms) [ RUN ] RecursorFuzzTest/2.ExtendBeta [ OK ] RecursorFuzzTest/2.ExtendBeta (14 ms) [----------] 5 tests from RecursorFuzzTest/2 (163 ms total) [----------] 5 tests from RecursorFuzzTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorFuzzTest/3.AlphaBetaConcordance [ OK ] RecursorFuzzTest/3.AlphaBetaConcordance (40 ms) [ RUN ] RecursorFuzzTest/3.Alignment [ OK ] RecursorFuzzTest/3.Alignment (41 ms) [ RUN ] RecursorFuzzTest/3.LinkAlphaBeta [ OK ] RecursorFuzzTest/3.LinkAlphaBeta (41 ms) [ RUN ] RecursorFuzzTest/3.ExtendAlpha [ OK ] RecursorFuzzTest/3.ExtendAlpha (13 ms) [ RUN ] RecursorFuzzTest/3.ExtendBeta [ OK ] RecursorFuzzTest/3.ExtendBeta (13 ms) [----------] 5 tests from RecursorFuzzTest/3 (148 ms total) [----------] 8 tests from MutationScorerTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] MutationScorerTest/0.BasicTest [ OK ] MutationScorerTest/0.BasicTest (0 ms) [ RUN ] MutationScorerTest/0.CopyTest [ OK ] MutationScorerTest/0.CopyTest (0 ms) [ RUN ] MutationScorerTest/0.MutationsAtBeginning [ OK ] MutationScorerTest/0.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/0.MutationsAtEnd [ OK ] MutationScorerTest/0.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/0.TinyTemplate [ OK ] MutationScorerTest/0.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/0.TemplateMutationWorkflow [ OK ] MutationScorerTest/0.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/0.DinucleotideInsertionTest [ OK ] MutationScorerTest/0.DinucleotideInsertionTest (1 ms) [ RUN ] MutationScorerTest/0.DinucleotideDeletionTest [ OK ] MutationScorerTest/0.DinucleotideDeletionTest (0 ms) [----------] 8 tests from MutationScorerTest/0 (1 ms total) [----------] 8 tests from MutationScorerTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MutationScorerTest/1.BasicTest [ OK ] MutationScorerTest/1.BasicTest (0 ms) [ RUN ] MutationScorerTest/1.CopyTest [ OK ] MutationScorerTest/1.CopyTest (0 ms) [ RUN ] MutationScorerTest/1.MutationsAtBeginning [ OK ] MutationScorerTest/1.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/1.MutationsAtEnd [ OK ] MutationScorerTest/1.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/1.TinyTemplate [ OK ] MutationScorerTest/1.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/1.TemplateMutationWorkflow [ OK ] MutationScorerTest/1.TemplateMutationWorkflow (1 ms) [ RUN ] MutationScorerTest/1.DinucleotideInsertionTest [ OK ] MutationScorerTest/1.DinucleotideInsertionTest (0 ms) [ RUN ] MutationScorerTest/1.DinucleotideDeletionTest [ OK ] MutationScorerTest/1.DinucleotideDeletionTest (1 ms) [----------] 8 tests from MutationScorerTest/1 (2 ms total) [----------] 8 tests from MutationScorerTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] MutationScorerTest/2.BasicTest [ OK ] MutationScorerTest/2.BasicTest (0 ms) [ RUN ] MutationScorerTest/2.CopyTest [ OK ] MutationScorerTest/2.CopyTest (0 ms) [ RUN ] MutationScorerTest/2.MutationsAtBeginning [ OK ] MutationScorerTest/2.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/2.MutationsAtEnd [ OK ] MutationScorerTest/2.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/2.TinyTemplate [ OK ] MutationScorerTest/2.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/2.TemplateMutationWorkflow [ OK ] MutationScorerTest/2.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/2.DinucleotideInsertionTest [ OK ] MutationScorerTest/2.DinucleotideInsertionTest (1 ms) [ RUN ] MutationScorerTest/2.DinucleotideDeletionTest [ OK ] MutationScorerTest/2.DinucleotideDeletionTest (1 ms) [----------] 8 tests from MutationScorerTest/2 (2 ms total) [----------] 8 tests from MutationScorerTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MutationScorerTest/3.BasicTest [ OK ] MutationScorerTest/3.BasicTest (0 ms) [ RUN ] MutationScorerTest/3.CopyTest [ OK ] MutationScorerTest/3.CopyTest (0 ms) [ RUN ] MutationScorerTest/3.MutationsAtBeginning [ OK ] MutationScorerTest/3.MutationsAtBeginning (1 ms) [ RUN ] MutationScorerTest/3.MutationsAtEnd [ OK ] MutationScorerTest/3.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/3.TinyTemplate [ OK ] MutationScorerTest/3.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/3.TemplateMutationWorkflow [ OK ] MutationScorerTest/3.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/3.DinucleotideInsertionTest [ OK ] MutationScorerTest/3.DinucleotideInsertionTest (1 ms) [ RUN ] MutationScorerTest/3.DinucleotideDeletionTest [ OK ] MutationScorerTest/3.DinucleotideDeletionTest (0 ms) [----------] 8 tests from MutationScorerTest/3 (2 ms total) [----------] 2 tests from SparseVectorTest [ RUN ] SparseVectorTest.BasicTest [ OK ] SparseVectorTest.BasicTest (0 ms) [ RUN ] SparseVectorTest.BasicTest2 [ OK ] SparseVectorTest.BasicTest2 (0 ms) [----------] 2 tests from SparseVectorTest (0 ms total) [----------] 1 test from SparseVector [ RUN ] SparseVector.CopyTest [ OK ] SparseVector.CopyTest (0 ms) [----------] 1 test from SparseVector (0 ms total) [----------] 7 tests from MutationTest [ RUN ] MutationTest.BasicTest [ OK ] MutationTest.BasicTest (0 ms) [ RUN ] MutationTest.DeleteTest [ OK ] MutationTest.DeleteTest (0 ms) [ RUN ] MutationTest.InsertTest [ OK ] MutationTest.InsertTest (0 ms) [ RUN ] MutationTest.ApplyMutationsTest [ OK ] MutationTest.ApplyMutationsTest (0 ms) [ RUN ] MutationTest.ApplyMutationsToSamePositionTest [ OK ] MutationTest.ApplyMutationsToSamePositionTest (0 ms) [ RUN ] MutationTest.MutationsToTranscript [ OK ] MutationTest.MutationsToTranscript (0 ms) [ RUN ] MutationTest.MutatedTemplatePositionsTest [ OK ] MutationTest.MutatedTemplatePositionsTest (0 ms) [----------] 7 tests from MutationTest (0 ms total) [----------] 5 tests from QvEvaluatorTest [ RUN ] QvEvaluatorTest.IncVsInc4 [ OK ] QvEvaluatorTest.IncVsInc4 (46 ms) [ RUN ] QvEvaluatorTest.DelVsDel4 [ OK ] QvEvaluatorTest.DelVsDel4 (43 ms) [ RUN ] QvEvaluatorTest.ExtraVsExtra4 [ OK ] QvEvaluatorTest.ExtraVsExtra4 (54 ms) [ RUN ] QvEvaluatorTest.MergeVsMerge4 [ OK ] QvEvaluatorTest.MergeVsMerge4 (35 ms) [ RUN ] QvEvaluatorTest.BadTagTest [ OK ] QvEvaluatorTest.BadTagTest (3 ms) [----------] 5 tests from QvEvaluatorTest (182 ms total) [----------] Global test environment tear-down [==========] 158 tests from 29 test cases ran. (1881 ms total) [ PASSED ] 158 tests. make[3]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' /usr/bin/make test-python make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[3]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.4.1 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.13 -I /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so 1.0.2 Python3 build is OK! make[3]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:385: /usr/bin/python3.14 setup.py install --root /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig/4.4.1 PYTHON_INCLUDE = /usr/include/python3.14 NUMPY_INCLUDE = /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Cpp.mk -j8 make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a' is up to date. make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Python.mk make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.4.1 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.14 -I /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib running build_py copying build/Python/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build copying build/Python/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build copying build/Python/_ConsensusCore.so -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build creating /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.14/dist-packages copying /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.14/dist-packages copying /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build/_ConsensusCore.so -> /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.14/dist-packages byte-compiling /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.14/dist-packages/ConsensusCore.py to ConsensusCore.cpython-314.pyc running install_egg_info running egg_info creating build/Python/ConsensusCore.egg-info writing build/Python/ConsensusCore.egg-info/PKG-INFO writing dependency_links to build/Python/ConsensusCore.egg-info/dependency_links.txt writing top-level names to build/Python/ConsensusCore.egg-info/top_level.txt writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' reading manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' adding license file 'LICENSES' writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' Copying build/Python/ConsensusCore.egg-info to /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.14/dist-packages/ConsensusCore-1.0.2.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:385: /usr/bin/python3 setup.py install --root /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig/4.4.1 PYTHON_INCLUDE = /usr/include/python3.13 NUMPY_INCLUDE = /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Cpp.mk -j8 make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a' is up to date. make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Python.mk make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.4.1 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.13 -I /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib running build_py copying build/Python/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.13_pbconsensuscore/build copying build/Python/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.13_pbconsensuscore/build copying build/Python/_ConsensusCore.so -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.13_pbconsensuscore/build creating /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.13/dist-packages copying /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.13_pbconsensuscore/build/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.13/dist-packages copying /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.13_pbconsensuscore/build/_ConsensusCore.so -> /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.13/dist-packages byte-compiling /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.13/dist-packages/ConsensusCore.py to ConsensusCore.cpython-313.pyc running install_egg_info running egg_info writing build/Python/ConsensusCore.egg-info/PKG-INFO writing dependency_links to build/Python/ConsensusCore.egg-info/dependency_links.txt writing top-level names to build/Python/ConsensusCore.egg-info/top_level.txt reading manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' adding license file 'LICENSES' writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' Copying build/Python/ConsensusCore.egg-info to /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.13/dist-packages/ConsensusCore-1.0.2.egg-info Skipping SOURCES.txt running install_scripts dh_install -a -O--buildsystem=pybuild debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' find debian -name meson.build -delete make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild I: dh_python3 fs:524: renaming _ConsensusCore.so to _ConsensusCore.cpython-313-aarch64-linux-gnu.so I: dh_python3 fs:524: renaming _ConsensusCore.so to _ConsensusCore.cpython-314-aarch64-linux-gnu.so debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_numpy3 dh_numpy3: skipping binary package libconsensuscore-dev which does not depend on the NumPy C ABI make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package libconsensuscore-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'libconsensuscore-dev' in '../libconsensuscore-dev_1.1.1+dfsg-9+b1_arm64.deb'. dpkg-deb: building package 'python3-pbconsensuscore' in '../python3-pbconsensuscore_1.1.1+dfsg-9+b1_arm64.deb'. dpkg-deb: building package 'python3-pbconsensuscore-dbgsym' in '../python3-pbconsensuscore-dbgsym_1.1.1+dfsg-9+b1_arm64.deb'. dpkg-genbuildinfo --build=any -O../consensuscore_1.1.1+dfsg-9+b1_arm64.buildinfo dpkg-genchanges --build=any -O../consensuscore_1.1.1+dfsg-9+b1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-05-07T05:39:30Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Thu, 07 May 2026 05:39:32 +0000 | +------------------------------------------------------------------------------+ consensuscore_1.1.1+dfsg-9+b1_arm64.changes: -------------------------------------------- Format: 1.8 Date: Thu, 23 Apr 2026 11:18:41 +0000 Source: consensuscore (1.1.1+dfsg-9) Binary: libconsensuscore-dev python3-pbconsensuscore python3-pbconsensuscore-dbgsym Binary-Only: yes Architecture: arm64 Version: 1.1.1+dfsg-9+b1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: arm Build Daemon (arm-ubc-04) Description: libconsensuscore-dev - algorithms for PacBio multiple sequence consensus -- development python3-pbconsensuscore - algorithms for PacBio multiple sequence consensus -- Python 3 Changes: consensuscore (1.1.1+dfsg-9+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for arm64; no source changes. * Rebuild on buildd for 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consensuscore_1.1.1+dfsg-9+b1_arm64.buildinfo 87d1809f94857e54f0899d5f2ecbafad 456868 libdevel optional libconsensuscore-dev_1.1.1+dfsg-9+b1_arm64.deb 89f3089d40d392fdc96a9be1ba46e18f 16928848 debug optional python3-pbconsensuscore-dbgsym_1.1.1+dfsg-9+b1_arm64.deb 0d2ccffd4a91a338dc6f3504f86c5904 821396 python optional python3-pbconsensuscore_1.1.1+dfsg-9+b1_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo Thu, 07 May 2026 05:39:33 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: consensuscore (1.1.1+dfsg-9) Binary: libconsensuscore-dev python3-pbconsensuscore python3-pbconsensuscore-dbgsym Architecture: arm64 Version: 1.1.1+dfsg-9+b1 Binary-Only-Changes: consensuscore (1.1.1+dfsg-9+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for arm64; no source changes. * Rebuild on buildd for loong64 . -- arm Build Daemon (arm-ubc-04) Thu, 23 Apr 2026 11:18:41 +0000 Checksums-Md5: 87d1809f94857e54f0899d5f2ecbafad 456868 libconsensuscore-dev_1.1.1+dfsg-9+b1_arm64.deb 89f3089d40d392fdc96a9be1ba46e18f 16928848 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-9+b1_arm64.deb 0d2ccffd4a91a338dc6f3504f86c5904 821396 python3-pbconsensuscore_1.1.1+dfsg-9+b1_arm64.deb Checksums-Sha1: bcb26c063f531de40f8a2bbdd4f3e607454214b6 456868 libconsensuscore-dev_1.1.1+dfsg-9+b1_arm64.deb e0b88023a82cefdc6fd02178704fa7effa87ff64 16928848 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-9+b1_arm64.deb e06a963d9949cd98157a3c346596998d6b8d1ce8 821396 python3-pbconsensuscore_1.1.1+dfsg-9+b1_arm64.deb Checksums-Sha256: edcc284a4682174b1d49165d95cb558b5de17c5ad90b2533d03cf7cb1c86d7bc 456868 libconsensuscore-dev_1.1.1+dfsg-9+b1_arm64.deb 74d1cbb4fc698646d7871ab68fc419862e83a10b789640d2189ffb88a6aadc80 16928848 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-9+b1_arm64.deb a317aab706b027816b633c1399df900d966dc19f57a9882c0a1130c8c760246e 821396 python3-pbconsensuscore_1.1.1+dfsg-9+b1_arm64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Thu, 07 May 2026 05:39:30 +0000 Build-Path: /build/reproducible-path/consensuscore-1.1.1+dfsg Installed-Build-Depends: architecture-properties (= 0.2.6+b2), autoconf (= 2.72-6), automake (= 1:1.18.1-4), autopoint (= 0.23.2-2), autotools-dev (= 20240727.1+nmu1), base-files (= 14), base-passwd (= 3.6.8+b1), bash (= 5.3-2), binutils (= 2.46-3), binutils-aarch64-linux-gnu (= 2.46-3), binutils-common (= 2.46-3), bsdextrautils (= 2.42-4), build-essential (= 12.12), bzip2 (= 1.0.8-6+b1), coreutils (= 9.10-1), cpp (= 4:15.2.0-5), cpp-15 (= 15.2.0-16), cpp-15-aarch64-linux-gnu (= 15.2.0-16), cpp-aarch64-linux-gnu (= 4:15.2.0-5), dash (= 0.5.12-12+b1), debconf (= 1.5.92), debhelper (= 13.31), debianutils (= 5.23.2+b1), dh-autoreconf (= 22), dh-exec (= 0.31), dh-python (= 7.20260309), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1+b1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), file (= 1:5.46-5+b1), findutils (= 4.10.0-3+b1), g++ (= 4:15.2.0-5), g++-15 (= 15.2.0-16), g++-15-aarch64-linux-gnu (= 15.2.0-16), g++-aarch64-linux-gnu (= 4:15.2.0-5), gcc (= 4:15.2.0-5), gcc-15 (= 15.2.0-16), gcc-15-aarch64-linux-gnu (= 15.2.0-16), gcc-15-base (= 15.2.0-16), gcc-16-base (= 16-20260322-1), gcc-aarch64-linux-gnu (= 4:15.2.0-5), gettext (= 0.23.2-2), gettext-base (= 0.23.2-2), grep (= 3.12-1+b1), groff-base (= 1.24.1-1), gzip (= 1.13-1+b1), hostname (= 3.25+b1), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 16-20260322-1), libatomic1 (= 16-20260322-1), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46-3), libblas3 (= 3.12.1-7+b1), libblkid1 (= 2.42-4), libboost-dev (= 1.90.0.2), libboost1.90-dev (= 1.90.0-6), libbz2-1.0 (= 1.0.8-6+b1), libc-bin (= 2.42-15), libc-dev-bin (= 2.42-15), libc-gconv-modules-extra (= 2.42-15), libc6 (= 2.42-15), libc6-dev (= 2.42-15), libcap-ng0 (= 0.9.3-1), libcc1-0 (= 16-20260322-1), libcrypt1 (= 1:4.5.1-1+b1), libctf-nobfd0 (= 2.46-3), libctf0 (= 2.46-3), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.282+b2), libdebhelper-perl (= 13.31), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.195-1), libexpat1 (= 2.7.5-1), libexpat1-dev (= 2.7.5-1), libffi8 (= 3.5.2-4), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-15-dev (= 15.2.0-16), libgcc-s1 (= 16-20260322-1), libgdbm-compat4t64 (= 1.26-1+b1), libgdbm6t64 (= 1.26-1+b1), libgfortran5 (= 16-20260322-1), libgmp10 (= 2:6.3.0+dfsg-5+b1), libgomp1 (= 16-20260322-1), libgprofng0 (= 2.46-3), libhwasan0 (= 16-20260322-1), libisl23 (= 0.27-2), libitm1 (= 16-20260322-1), libjansson4 (= 2.14-2+b4), libjs-sphinxdoc (= 8.2.3-12), liblapack3 (= 3.12.1-7+b1), liblsan0 (= 16-20260322-1), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.46-5+b1), libmagic1t64 (= 1:5.46-5+b1), libmd0 (= 1.1.0-2+b2), libmount1 (= 2.42-4), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libncursesw6 (= 6.6+20251231-1), libpam-modules (= 1.7.0-5+b1), libpam-modules-bin (= 1.7.0-5+b1), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5+b1), libpcre2-8-0 (= 10.46-1+b1), libperl5.40 (= 5.40.1-7+b1), libpipeline1 (= 1.5.8-3), libpython3-all-dev (= 3.13.9-3), libpython3-dev (= 3.13.9-3), libpython3-stdlib (= 3.13.9-3), libpython3.13 (= 3.13.12-1), libpython3.13-dev (= 3.13.12-1), libpython3.13-minimal (= 3.13.12-1), libpython3.13-stdlib (= 3.13.12-1), libpython3.14 (= 3.14.4-2), libpython3.14-dev (= 3.14.4-2), libpython3.14-minimal (= 3.14.4-2), libpython3.14-stdlib (= 3.14.4-2), libreadline8t64 (= 8.3-4), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.10-1), libsframe3 (= 2.46-3), libsimde-dev (= 0.8.4~rc3-5), libsmartcols1 (= 2.42-4), libsqlite3-0 (= 3.46.1-9+b1), libssl3t64 (= 3.6.2-1), libstdc++-15-dev (= 15.2.0-16), libstdc++6 (= 16-20260322-1), libsystemd0 (= 260.1-1), libtinfo6 (= 6.6+20251231-1), libtool (= 2.5.4-11), libtsan2 (= 16-20260322-1), libubsan1 (= 16-20260322-1), libuchardet0 (= 0.0.8-2+b1), libudev1 (= 260.1-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42-4), libxml2-16 (= 2.15.2+dfsg-0.1), libzstd1 (= 1.5.7+dfsg-3+b1), linux-libc-dev (= 6.19.13-1), m4 (= 1.4.21-1), make (= 4.4.1-3+b1), man-db (= 2.13.1-1+b1), mawk (= 1.3.4.20260302-1), media-types (= 14.0.0), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1), netbase (= 6.5), openssl-provider-legacy (= 3.6.2-1), patch (= 2.8-2+b1), perl (= 5.40.1-7+b1), perl-base (= 5.40.1-7+b1), perl-modules-5.40 (= 5.40.1-7), po-debconf (= 1.0.22), python3 (= 3.13.9-3), python3-all (= 3.13.9-3), python3-all-dev (= 3.13.9-3), python3-autocommand (= 2.2.2-4), python3-dev (= 3.13.9-3), python3-inflect (= 7.5.0-1), python3-jaraco.context (= 6.0.1-2), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-minimal (= 3.13.9-3), python3-more-itertools (= 10.8.0-1), python3-numpy (= 1:2.3.5+ds-3), python3-numpy-dev (= 1:2.3.5+ds-3), python3-pkg-resources (= 78.1.1-0.1), python3-setuptools (= 78.1.1-0.1), python3-typeguard (= 4.4.4-2), python3-typing-extensions (= 4.15.0-2), python3-zipp (= 3.23.0-1), python3.13 (= 3.13.12-1), python3.13-dev (= 3.13.12-1), python3.13-minimal (= 3.13.12-1), python3.14 (= 3.14.4-2), python3.14-dev (= 3.14.4-2), python3.14-minimal (= 3.14.4-2), readline-common (= 8.3-4), rpcsvc-proto (= 1.4.3-1+b2), sed (= 4.9-3), sensible-utils (= 0.0.26), swig (= 4.4.1-2), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-4), tzdata (= 2026a-3), util-linux (= 2.42-4), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1776943121" +------------------------------------------------------------------------------+ | Package contents Thu, 07 May 2026 05:39:33 +0000 | +------------------------------------------------------------------------------+ libconsensuscore-dev_1.1.1+dfsg-9+b1_arm64.deb ---------------------------------------------- new Debian package, version 2.0. size 456868 bytes: control archive=2220 bytes. 769 bytes, 18 lines control 4417 bytes, 54 lines md5sums Package: libconsensuscore-dev Source: consensuscore (1.1.1+dfsg-9) Version: 1.1.1+dfsg-9+b1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 3472 Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/PacificBiosciences/ConsensusCore Description: algorithms for PacBio multiple sequence consensus -- development files ConsensusCore is a library of C++ algorithms for Pacific Biosciences multiple sequence consensus that powers Quiver (Python) and ConsensusTools (.NET). This library primarily exists as the backend for GenomicConsensus, which implements Quiver. . This package is part of the SMRT Analysis suite. It provides the header files and static library. drwxr-xr-x root/root 0 2026-04-23 11:18 ./ drwxr-xr-x root/root 0 2026-04-23 11:18 ./usr/ drwxr-xr-x root/root 0 2026-04-23 11:18 ./usr/include/ drwxr-xr-x root/root 0 2026-04-23 11:18 ./usr/include/ConsensusCore/ drwxr-xr-x root/root 0 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/ -rw-r--r-- root/root 1214 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/AffineAlignment.hpp -rw-r--r-- root/root 775 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/AlignConfig.hpp -rw-r--r-- root/root 565 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/LinearAlignment.hpp -rw-r--r-- root/root 1956 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/PairwiseAlignment.hpp -rw-r--r-- root/root 196 2018-08-14 14:23 ./usr/include/ConsensusCore/Checksum.hpp -rw-r--r-- root/root 653 2018-08-14 14:23 ./usr/include/ConsensusCore/Coverage.hpp drwxr-xr-x root/root 0 2026-04-23 11:18 ./usr/include/ConsensusCore/Edna/ -rw-r--r-- root/root 792 2018-08-14 14:23 ./usr/include/ConsensusCore/Edna/EdnaConfig.hpp -rw-r--r-- root/root 513 2018-08-14 14:23 ./usr/include/ConsensusCore/Edna/EdnaCounts.hpp -rw-r--r-- root/root 5876 2026-04-23 11:18 ./usr/include/ConsensusCore/Edna/EdnaEvaluator.hpp -rw-r--r-- root/root 2788 2018-08-14 14:23 ./usr/include/ConsensusCore/Feature.hpp -rw-r--r-- root/root 2051 2018-08-14 14:23 ./usr/include/ConsensusCore/Features.hpp -rw-r--r-- root/root 1517 2018-08-14 14:23 ./usr/include/ConsensusCore/Interval.hpp -rw-r--r-- root/root 838 2026-04-23 11:18 ./usr/include/ConsensusCore/LFloat.hpp -rw-r--r-- root/root 510 2018-08-14 14:23 ./usr/include/ConsensusCore/Logging.hpp drwxr-xr-x root/root 0 2026-04-23 11:18 ./usr/include/ConsensusCore/Matrix/ -rw-r--r-- root/root 734 2018-08-14 14:23 ./usr/include/ConsensusCore/Matrix/AbstractMatrix.hpp -rw-r--r-- root/root 3113 2018-08-14 14:23 ./usr/include/ConsensusCore/Matrix/DenseMatrix-inl.hpp -rw-r--r-- root/root 2549 2026-04-23 11:18 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python3-pbconsensuscore python3-pbconsensuscore_1.1.1+dfsg-9+b1_arm64.deb ------------------------------------------------- new Debian package, version 2.0. size 821396 bytes: control archive=1436 bytes. 890 bytes, 18 lines control 985 bytes, 10 lines md5sums 301 bytes, 12 lines * postinst #!/bin/sh 439 bytes, 12 lines * prerm #!/bin/sh Package: python3-pbconsensuscore Source: consensuscore (1.1.1+dfsg-9) Version: 1.1.1+dfsg-9+b1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 6043 Depends: python3 (<< 3.15), python3 (>= 3.13~), python3-numpy2-abi0 | python3-numpy-abi9, python3:any, libc6 (>= 2.29), libgcc-s1 (>= 4.5), libstdc++6 (>= 13.1) Section: python Priority: optional Homepage: https://github.com/PacificBiosciences/ConsensusCore Description: algorithms for PacBio multiple sequence consensus -- Python 3 ConsensusCore is a library of C++ algorithms for Pacific Biosciences multiple sequence consensus that powers Quiver (Python) and ConsensusTools (.NET). This library primarily exists as the backend for GenomicConsensus, which implements Quiver. . This package is part of the SMRT Analysis suite. 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