=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderd2cs9Ag/inputs/consensuscore_1.1.1+dfsg-8_arm64.buildinfo Source: consensuscore Version: 1.1.1+dfsg-8 rebuilderd-worker node: codethink02-arm64 +------------------------------------------------------------------------------+ | Downloading sources Fri, 19 Sep 2025 03:56:52 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian sid InRelease [216 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [11.1 MB] Fetched 22.0 MB in 2s (9589 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/c/consensuscore/consensuscore_1.1.1%2bdfsg-8.dsc' consensuscore_1.1.1+dfsg-8.dsc 2372 SHA256:13666ceb9ac2d2c87085524d6bdf660d2304695fcd39fa7387563ea38d8504c4 'https://deb.debian.org/debian/pool/main/c/consensuscore/consensuscore_1.1.1%2bdfsg.orig.tar.xz' consensuscore_1.1.1+dfsg.orig.tar.xz 363936 SHA256:47865e3769e2d6647003f70ffce68f8a5b2f69a6ae04ff27d106b3ec84660d82 'https://deb.debian.org/debian/pool/main/c/consensuscore/consensuscore_1.1.1%2bdfsg-8.debian.tar.xz' consensuscore_1.1.1+dfsg-8.debian.tar.xz 10280 SHA256:c6bca19d3f472d6c97567c42c6c677b2183a2d8086fd369e80cf46e9d781ef83 47865e3769e2d6647003f70ffce68f8a5b2f69a6ae04ff27d106b3ec84660d82 consensuscore_1.1.1+dfsg.orig.tar.xz c6bca19d3f472d6c97567c42c6c677b2183a2d8086fd369e80cf46e9d781ef83 consensuscore_1.1.1+dfsg-8.debian.tar.xz 13666ceb9ac2d2c87085524d6bdf660d2304695fcd39fa7387563ea38d8504c4 consensuscore_1.1.1+dfsg-8.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Fri, 19 Sep 2025 03:56:55 +0000 | +------------------------------------------------------------------------------+ Rebuilding consensuscore=1.1.1+dfsg-8 in /srv/rebuilderd/tmp/rebuilderd2cs9Ag/inputs now. +------------------------------------------------------------------------------+ | WARNING: calling debrebuild without --cache, hammering snapshot.d.o :( | +------------------------------------------------------------------------------+ + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderd2cs9Ag/out --builder=sbuild+unshare -- /srv/rebuilderd/tmp/rebuilderd2cs9Ag/inputs/consensuscore_1.1.1+dfsg-8_arm64.buildinfo /srv/rebuilderd/tmp/rebuilderd2cs9Ag/inputs/consensuscore_1.1.1+dfsg-8_arm64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/consensuscore-1.1.1+dfsg I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie InRelease [175 kB] Get:2 http://snapshot.debian.org/archive/debian/20250613T202933Z trixie InRelease [166 kB] Get:3 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 Packages [9620 kB] Get:4 http://snapshot.debian.org/archive/debian/20250613T202933Z trixie/main arm64 Packages [9608 kB] Fetched 19.6 MB in 3s (7521 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20250430T203420Z/dists/trixie/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20250613T202933Z/dists/trixie/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 swig arm64 4.3.0-1 [1406 kB] Fetched 1406 kB in 0s (9311 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxc617clp/swig_4.3.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (141 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm68it1t1/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libmount1 arm64 2.41-4 [199 kB] Fetched 199 kB in 0s (1647 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp624dabiz/libmount1_2.41-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 bzip2 arm64 1.0.8-6 [39.5 kB] Fetched 39.5 kB in 0s (318 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmweu5r4z/bzip2_1.0.8-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libsframe1 arm64 2.44-3 [77.8 kB] Fetched 77.8 kB in 0s (623 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0h5hzy5/libsframe1_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-all arm64 3.13.3-1 [1048 B] Fetched 1048 B in 0s (8046 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvvkpfaeb/python3-all_3.13.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libisl23 arm64 0.27-1 [601 kB] Fetched 601 kB in 0s (4001 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprn68i9jv/libisl23_0.27-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libtool all 2.5.4-4 [539 kB] Fetched 539 kB in 0s (3851 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2v75xp35/libtool_2.5.4-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 automake all 1:1.17-4 [862 kB] Fetched 862 kB in 0s (5459 kB/s) dpkg-name: info: moved 'automake_1%3a1.17-4_all.deb' to '/srv/rebuilderd/tmp/tmpmds0udx7/automake_1.17-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 file arm64 1:5.46-5 [43.7 kB] Fetched 43.7 kB in 0s (340 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5_arm64.deb' to '/srv/rebuilderd/tmp/tmpstonn7wb/file_5.46-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 tzdata all 2025b-2 [260 kB] Fetched 260 kB in 0s (2592 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpidl5mcnq/tzdata_2025b-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-minimal arm64 3.13.3-1 [27.2 kB] Fetched 27.2 kB in 0s (219 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcxfkvuhl/python3-minimal_3.13.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Fetched 40.2 kB in 0s (294 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwn3ck4tc/libpipeline1_1.5.8-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libsystemd0 arm64 257.5-2 [421 kB] Fetched 421 kB in 0s (2860 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp62zvtlne/libsystemd0_257.5-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Fetched 8620 B in 0s (84.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2pxfp664/dh-strip-nondeterminism_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 binutils-aarch64-linux-gnu arm64 2.44-3 [820 kB] Fetched 820 kB in 0s (5767 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf2rsqc55/binutils-aarch64-linux-gnu_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-pkg-resources all 78.1.0-1.2 [224 kB] Fetched 224 kB in 0s (1794 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvehx4olv/python3-pkg-resources_78.1.0-1.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Fetched 1404 kB in 0s (8630 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqib5qq9q/man-db_2.13.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libgdbm-compat4t64 arm64 1.24-2 [50.3 kB] Fetched 50.3 kB in 0s (406 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphm_iwvl5/libgdbm-compat4t64_1.24-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Fetched 19.7 kB in 0s (147 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1j2phlly/libfile-stripnondeterminism-perl_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libgcc-14-dev arm64 14.2.0-19 [2359 kB] Fetched 2359 kB in 0s (17.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptc2uxhu0/libgcc-14-dev_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libgcc-s1 arm64 14.2.0-19 [54.1 kB] Fetched 54.1 kB in 0s (651 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps89d8ucp/libgcc-s1_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 findutils arm64 4.10.0-3 [696 kB] Fetched 696 kB in 0s (4986 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp953xplyl/findutils_4.10.0-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libsimde-dev all 0.8.2-3 [467 kB] Fetched 467 kB in 0s (3551 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps9x4ap9d/libsimde-dev_0.8.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 917 kB in 0s (6394 kB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmplois7tvh/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libaudit1 arm64 1:4.0.2-2+b2 [54.6 kB] Fetched 54.6 kB in 0s (440 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.2-2+b2_arm64.deb' to '/srv/rebuilderd/tmp/tmpujc1o2ij/libaudit1_4.0.2-2+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (903 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpio_auh35/debconf_1.5.91_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libpam-modules-bin arm64 1.7.0-3 [48.0 kB] Fetched 48.0 kB in 0s (356 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuakm9c9u/libpam-modules-bin_1.7.0-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-setuptools all 78.1.0-1.2 [738 kB] Fetched 738 kB in 0s (5437 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjb3bn6_7/python3-setuptools_78.1.0-1.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Fetched 103 kB in 0s (840 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5_arm64.deb' to '/srv/rebuilderd/tmp/tmpyn62e1az/libmagic1t64_5.46-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 architecture-properties arm64 0.2.6 [2336 B] Fetched 2336 B in 0s (20.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpubyxdel3/architecture-properties_0.2.6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libexpat1-dev arm64 2.7.1-1 [145 kB] Fetched 145 kB in 0s (1143 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq4_b7jmk/libexpat1-dev_2.7.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libc-dev-bin arm64 2.41-7 [56.5 kB] Fetched 56.5 kB in 0s (417 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcr1klen3/libc-dev-bin_2.41-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 cpp arm64 4:14.2.0-1 [1568 B] Fetched 1568 B in 0s (11.7 kB/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp5t8rd48g/cpp_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Fetched 37.3 kB in 0s (278 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2qmbuhzl/python3-typeguard_4.4.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libgprofng0 arm64 2.44-3 [668 kB] Fetched 668 kB in 0s (4321 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpod1mf0lb/libgprofng0_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libpython3.13 arm64 3.13.3-2 [1975 kB] Fetched 1975 kB in 0s (17.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4phq0ceg/libpython3.13_3.13.3-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (113 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkkoj0tg9/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libpython3-stdlib arm64 3.13.3-1 [10.2 kB] Fetched 10.2 kB in 0s (88.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm3ims7ej/libpython3-stdlib_3.13.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 perl-modules-5.40 all 5.40.1-3 [3021 kB] Fetched 3021 kB in 0s (16.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeaei5uk_/perl-modules-5.40_5.40.1-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libdebconfclient0 arm64 0.278 [10.6 kB] Fetched 10.6 kB in 0s (83.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvjtr3lyd/libdebconfclient0_0.278_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libattr1 arm64 1:2.5.2-3 [22.7 kB] Fetched 22.7 kB in 0s (169 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpy87g0k5o/libattr1_2.5.2-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Fetched 629 kB in 0s (4588 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgzzil2e8/libxml2_2.12.7+dfsg+really2.9.14-0.4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libpython3-all-dev arm64 3.13.3-1 [1068 B] Fetched 1068 B in 0s (7674 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvkbxrqc7/libpython3-all-dev_3.13.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 dash arm64 0.5.12-12 [95.6 kB] Fetched 95.6 kB in 0s (678 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmwkif27f/dash_0.5.12-12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libhwasan0 arm64 14.2.0-19 [1442 kB] Fetched 1442 kB in 0s (7422 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw7lo5b5r/libhwasan0_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libdpkg-perl all 1.22.18 [649 kB] Fetched 649 kB in 0s (4691 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpccgh3lqm/libdpkg-perl_1.22.18_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libbz2-1.0 arm64 1.0.8-6 [37.8 kB] Fetched 37.8 kB in 0s (275 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqr5c9rdi/libbz2-1.0_1.0.8-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250613T202933Z trixie/main arm64 m4 arm64 1.4.19-8 [285 kB] Fetched 285 kB in 0s (2273 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwfa2piib/m4_1.4.19-8_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-19 [17.7 MB] Fetched 17.7 MB in 0s (38.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyd108ane/gcc-14-aarch64-linux-gnu_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libncursesw6 arm64 6.5+20250216-2 [124 kB] Fetched 124 kB in 0s (750 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgxnuv_gm/libncursesw6_6.5+20250216-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libpam-modules arm64 1.7.0-3 [170 kB] Fetched 170 kB in 0s (1224 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx6m3huyv/libpam-modules_1.7.0-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 binutils-common arm64 2.44-3 [2509 kB] Fetched 2509 kB in 0s (11.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp82wb1dsb/binutils-common_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 rpcsvc-proto arm64 1.4.3-1+b1 [60.5 kB] Fetched 60.5 kB in 0s (480 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoq6uwct2/rpcsvc-proto_1.4.3-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libsmartcols1 arm64 2.41-4 [139 kB] Fetched 139 kB in 0s (1648 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp67iuuadd/libsmartcols1_2.41-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libc-bin arm64 2.41-7 [550 kB] Fetched 550 kB in 0s (3403 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuunp8y86/libc-bin_2.41-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libseccomp2 arm64 2.6.0-2 [51.0 kB] Fetched 51.0 kB in 0s (412 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdqawwnu2/libseccomp2_2.6.0-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Fetched 32.4 kB in 0s (276 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_rqxizei/python3-inflect_7.3.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 g++ arm64 4:14.2.0-1 [1332 B] Fetched 1332 B in 0s (18.3 kB/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpgub5eijh/g++_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (215 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8p_zgaob/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libpcre2-8-0 arm64 10.45-1 [262 kB] Fetched 262 kB in 0s (2022 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5tmcscfu/libpcre2-8-0_10.45-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Fetched 65.3 kB in 0s (889 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx0wnphqm/python3-more-itertools_10.6.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libasan8 arm64 14.2.0-19 [2578 kB] Fetched 2578 kB in 0s (14.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgs0zkovg/libasan8_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250613T202933Z trixie/main arm64 coreutils arm64 9.7-2 [2947 kB] Fetched 2947 kB in 0s (17.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7tj62idv/coreutils_9.7-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libcc1-0 arm64 14.2.0-19 [42.2 kB] Fetched 42.2 kB in 0s (325 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk5dq1llp/libcc1-0_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libzstd1 arm64 1.5.7+dfsg-1 [266 kB] Fetched 266 kB in 0s (2114 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj0of4_cj/libzstd1_1.5.7+dfsg-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 sysvinit-utils arm64 3.14-4 [34.0 kB] Fetched 34.0 kB in 0s (263 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw1as_ofq/sysvinit-utils_3.14-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Fetched 24.8 kB in 0s (180 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe7llgisj/sensible-utils_0.0.24_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libmpc3 arm64 1.3.1-1+b3 [50.5 kB] Fetched 50.5 kB in 0s (372 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl5udehv3/libmpc3_1.3.1-1+b3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 media-types all 13.0.0 [29.3 kB] Fetched 29.3 kB in 0s (235 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp49hdwo8s/media-types_13.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB] Fetched 1819 kB in 0s (11.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_6cqdi2f/liblapack3_3.12.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 dpkg arm64 1.22.18 [1529 kB] Fetched 1529 kB in 0s (9604 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn2ce4sl6/dpkg_1.22.18_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libboost1.83-dev arm64 1.83.0-4.2 [10.6 MB] Fetched 10.6 MB in 0s (29.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8kw2231c/libboost1.83-dev_1.83.0-4.2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libblas3 arm64 3.12.1-2 [104 kB] Fetched 104 kB in 0s (767 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5p83cawi/libblas3_3.12.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 g++-14 arm64 14.2.0-19 [22.5 kB] Fetched 22.5 kB in 0s (170 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdclgub7o/g++-14_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 openssl-provider-legacy arm64 3.5.0-1 [304 kB] Fetched 304 kB in 0s (2203 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6gx__a22/openssl-provider-legacy_3.5.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-numpy arm64 1:2.2.4+ds-1 [3604 kB] Fetched 3604 kB in 0s (18.9 MB/s) dpkg-name: info: moved 'python3-numpy_1%3a2.2.4+ds-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpnsoczz35/python3-numpy_2.2.4+ds-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (767 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5yu2_8em/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 8276 B in 0s (68.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjqmyi7_l/python3-jaraco.context_6.0.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libstdc++-14-dev arm64 14.2.0-19 [2295 kB] Fetched 2295 kB in 0s (13.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6_cf9s27/libstdc++-14-dev_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libgmp10 arm64 2:6.3.0+dfsg-3 [535 kB] Fetched 535 kB in 0s (3775 kB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpj1ey_gl7/libgmp10_6.3.0+dfsg-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libmd0 arm64 1.1.0-2+b1 [33.7 kB] Fetched 33.7 kB in 0s (239 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz_lmhx7s/libmd0_1.1.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-all-dev arm64 3.13.3-1 [1068 B] Fetched 1068 B in 0s (8001 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdsltd8il/python3-all-dev_3.13.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libcap2 arm64 1:2.75-6 [27.5 kB] Fetched 27.5 kB in 0s (216 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.75-6_arm64.deb' to '/srv/rebuilderd/tmp/tmpa6v6x4hz/libcap2_2.75-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libperl5.40 arm64 5.40.1-3 [4126 kB] Fetched 4126 kB in 0s (21.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4am6w8pf/libperl5.40_5.40.1-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libpython3.13-minimal arm64 3.13.3-2 [855 kB] Fetched 855 kB in 0s (5725 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprh2_iy_y/libpython3.13-minimal_3.13.3-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B] Fetched 1200 B in 0s (10.6 kB/s) dpkg-name: info: moved 'g++-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpgkhok0l9/g++-aarch64-linux-gnu_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 init-system-helpers all 1.68 [38.7 kB] Fetched 38.7 kB in 0s (380 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppcuum4zr/init-system-helpers_1.68_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Fetched 90.5 kB in 0s (1439 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnn3ux5ir/python3-typing-extensions_4.13.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3.13 arm64 3.13.3-2 [751 kB] Fetched 751 kB in 0s (5638 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1jt_8lqo/python3.13_3.13.3-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Fetched 1610 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr2z4yp68/gettext_0.23.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libtsan2 arm64 14.2.0-19 [2383 kB] Fetched 2383 kB in 0s (13.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpebfctur6/libtsan2_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Fetched 30.5 kB in 0s (194 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb7l3eo09/libjs-sphinxdoc_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 dpkg-dev all 1.22.18 [1338 kB] Fetched 1338 kB in 0s (8620 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy7q_i5qj/dpkg-dev_1.22.18_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 grep arm64 3.11-4+b1 [426 kB] Fetched 426 kB in 0s (3059 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcmuuyvqe/grep_3.11-4+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B] Fetched 1440 B in 0s (13.7 kB/s) dpkg-name: info: moved 'gcc-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpo6w4znuy/gcc-aarch64-linux-gnu_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (1437 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps9ylqlfi/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libpam0g arm64 1.7.0-3 [68.6 kB] Fetched 68.6 kB in 0s (599 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9oquqtjo/libpam0g_1.7.0-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libitm1 arm64 14.2.0-19 [24.2 kB] Fetched 24.2 kB in 0s (230 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeidghhfy/libitm1_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libblkid1 arm64 2.41-4 [165 kB] Fetched 165 kB in 0s (1200 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphhcgzxp1/libblkid1_2.41-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Fetched 69.4 kB in 0s (591 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn5b1dpuw/readline-common_8.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 dh-python all 6.20250414 [116 kB] Fetched 116 kB in 0s (857 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptrdfvhx2/dh-python_6.20250414_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-9 [629 kB] Fetched 629 kB in 0s (4211 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp29ydhmoo/libdb5.3t64_5.3.28+dfsg2-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libacl1 arm64 2.3.2-2+b1 [32.2 kB] Fetched 32.2 kB in 0s (242 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpebjnacpf/libacl1_2.3.2-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Fetched 21.2 kB in 0s (166 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiuioo6u6/libffi8_3.4.7-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-dev arm64 3.13.3-1 [26.1 kB] Fetched 26.1 kB in 0s (196 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuua4tjl_/python3-dev_3.13.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 ncurses-base all 6.5+20250216-2 [273 kB] Fetched 273 kB in 0s (1964 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeqzvj_19/ncurses-base_6.5+20250216-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 base-files arm64 13.7 [72.9 kB] Fetched 72.9 kB in 0s (538 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpi0lcpx/base-files_13.7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libmpfr6 arm64 4.2.2-1 [685 kB] Fetched 685 kB in 0s (9230 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpglc22zs5/libmpfr6_4.2.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 perl-base arm64 5.40.1-3 [1526 kB] Fetched 1526 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2aymcho6/perl-base_5.40.1-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 debianutils arm64 5.22 [92.3 kB] Fetched 92.3 kB in 0s (830 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7h21rs13/debianutils_5.22_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1 [136 kB] Fetched 136 kB in 0s (1078 kB/s) dpkg-name: info: moved 'python3-numpy-dev_1%3a2.2.4+ds-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp1er4ewdc/python3-numpy-dev_2.2.4+ds-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Fetched 1129 kB in 0s (2912 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsopku6pi/groff-base_1.23.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 liblsan0 arm64 14.2.0-19 [1161 kB] Fetched 1161 kB in 0s (7001 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsl15b7yl/liblsan0_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (853 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9xsggelv/autotools-dev_20240727.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 liblzma5 arm64 5.8.1-1 [303 kB] Fetched 303 kB in 0s (2314 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprwypx7_u/liblzma5_5.8.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3.13-minimal arm64 3.13.3-2 [1998 kB] Fetched 1998 kB in 0s (12.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0itgxhi0/python3.13-minimal_3.13.3-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libctf-nobfd0 arm64 2.44-3 [152 kB] Fetched 152 kB in 0s (1126 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp54dhwzfc/libctf-nobfd0_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libuuid1 arm64 2.41-4 [37.4 kB] Fetched 37.4 kB in 0s (279 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd2pwquv9/libuuid1_2.41-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 bash arm64 5.2.37-2 [1457 kB] Fetched 1457 kB in 0s (9079 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprcsfoq4n/bash_5.2.37-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libpython3.13-dev arm64 3.13.3-2 [4688 kB] Fetched 4688 kB in 0s (22.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp66rl4iw0/libpython3.13-dev_3.13.3-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 bsdutils arm64 1:2.41-4 [109 kB] Fetched 109 kB in 0s (806 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.41-4_arm64.deb' to '/srv/rebuilderd/tmp/tmp13qan57f/bsdutils_2.41-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Fetched 93.9 kB in 0s (896 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa0d1nhgs/bsdextrautils_2.41-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libgdbm6t64 arm64 1.24-2 [74.0 kB] Fetched 74.0 kB in 0s (486 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj7x_voei/libgdbm6t64_1.24-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 build-essential arm64 12.12 [4624 B] Fetched 4624 B in 0s (33.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp421rjay8/build-essential_12.12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libc6-dev arm64 2.41-7 [1621 kB] Fetched 1621 kB in 0s (10.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph4jmhfb9/libc6-dev_2.41-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Fetched 69.2 kB in 0s (508 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpde4wpm_f/libuchardet0_0.0.8-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 autoconf all 2.72-3.1 [494 kB] Fetched 494 kB in 0s (2865 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpofgvv8cd/autoconf_2.72-3.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libunistring5 arm64 1.3-2 [453 kB] Fetched 453 kB in 0s (3365 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp160i7kvm/libunistring5_1.3-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 base-passwd arm64 3.6.7 [53.4 kB] Fetched 53.4 kB in 0s (406 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp4qx2ty7/base-passwd_3.6.7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 linux-libc-dev all 6.12.22-1 [2542 kB] Fetched 2542 kB in 0s (5682 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5o1dcwcj/linux-libc-dev_6.12.22-1_all.deb' Downloading dependency 1 of 193: swig:arm64=4.3.0-1 Downloading dependency 2 of 193: dh-autoreconf:arm64=20 Downloading dependency 3 of 193: libmount1:arm64=2.41-4 Downloading dependency 4 of 193: bzip2:arm64=1.0.8-6 Downloading dependency 5 of 193: libsframe1:arm64=2.44-3 Downloading dependency 6 of 193: python3-all:arm64=3.13.3-1 Downloading dependency 7 of 193: libisl23:arm64=0.27-1 Downloading dependency 8 of 193: libtool:arm64=2.5.4-4 Downloading dependency 9 of 193: automake:arm64=1:1.17-4 Downloading dependency 10 of 193: file:arm64=1:5.46-5 Downloading dependency 11 of 193: tzdata:arm64=2025b-2 Downloading dependency 12 of 193: python3-minimal:arm64=3.13.3-1 Downloading dependency 13 of 193: libpipeline1:arm64=1.5.8-1 Downloading dependency 14 of 193: libsystemd0:arm64=257.5-2 Downloading dependency 15 of 193: dh-strip-nondeterminism:arm64=1.14.1-2 Downloading dependency 16 of 193: binutils-aarch64-linux-gnu:arm64=2.44-3 Downloading dependency 17 of 193: python3-pkg-resources:arm64=78.1.0-1.2 Downloading dependency 18 of 193: man-db:arm64=2.13.0-1 Downloading dependency 19 of 193: libgdbm-compat4t64:arm64=1.24-2 Downloading dependency 20 of 193: libfile-stripnondeterminism-perl:arm64=1.14.1-2 Downloading dependency 21 of 193: libgcc-14-dev:arm64=14.2.0-19 Downloading dependency 22 of 193: libgcc-s1:arm64=14.2.0-19 Downloading dependency 23 of 193: findutils:arm64=4.10.0-3 Downloading dependency 24 of 193: libsimde-dev:arm64=0.8.2-3 Downloading dependency 25 of 193: zlib1g-dev:arm64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 26 of 193: libaudit1:arm64=1:4.0.2-2+b2 Downloading dependency 27 of 193: debconf:arm64=1.5.91 Downloading dependency 28 of 193: libpam-modules-bin:arm64=1.7.0-3 Downloading dependency 29 of 193: python3-setuptools:arm64=78.1.0-1.2 Downloading dependency 30 of 193: libmagic1t64:arm64=1:5.46-5 Downloading dependency 31 of 193: architecture-properties:arm64=0.2.6 Downloading dependency 32 of 193: libexpat1-dev:arm64=2.7.1-1 Downloading dependency 33 of 193: libc-dev-bin:arm64=2.41-7 Downloading dependency 34 of 193: cpp:arm64=4:14.2.0-1 Downloading dependency 35 of 193: 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dependency 51 of 193: libncursesw6:arm64=6.5+20250216-2 Downloading dependency 52 of 193: libpam-modules:arm64=1.7.0-3 Downloading dependency 53 of 193: binutils-common:arm64=2.44-3 Downloading dependency 54 of 193: rpcsvc-proto:arm64=1.4.3-1+b1 Downloading dependency 55 of 193: libsmartcols1:arm64=2.41-4 Downloading dependency 56 of 193: libc-bin:arm64=2.41-7 Downloading dependency 57 of 193: libseccomp2:arm64=2.6.0-2 Downloading dependency 58 of 193: python3-inflect:arm64=7.3.1-2 Downloading dependency 59 of 193: g++:arm64=4:14.2.0-1 Downloading dependency 60 of 193: intltool-debian:arm64=0.35.0+20060710.6 Downloading dependency 61 of 193: libpcre2-8-0:arm64=10.45-1 Downloading dependency 62 of 193: python3-more-itertools:arm64=10.6.0-1 Downloading dependency 63 of 193: libasan8:arm64=14.2.0-19 Downloading dependency 64 of 193: coreutils:arm64=9.7-2 Downloading dependency 65 of 193: libcc1-0:arm64=14.2.0-19 Downloading dependency 66 of 193: libzstd1:arm64=1.5.7+dfsg-1 Downloading dependency 67 of 193: sysvinit-utils:arm64=3.14-4 Downloading dependency 68 of 193: sensible-utils:arm64=0.0.24 Downloading dependency 69 of 193: libmpc3:arm64=1.3.1-1+b3 Downloading dependency 70 of 193: media-types:arm64=13.0.0 Downloading dependency 71 of 193: liblapack3:arm64=3.12.1-2 Downloading dependency 72 of 193: dpkg:arm64=1.22.18 Downloading dependency 73 of 193: libboost1.83-dev:arm64=1.83.0-4.2 Downloading dependency 74 of 193: libblas3:arm64=3.12.1-2 Downloading dependency 75 of 193: g++-14:arm64=14.2.0-19 Downloading dependency 76 of 193: openssl-provider-legacy:arm64=3.5.0-1 Downloading dependency 77 of 193: python3-numpy:arm64=1:2.2.4+ds-1 Downloading dependency 78 of 193: libarchive-zip-perl:arm64=1.68-1 Downloading dependency 79 of 193: python3-jaraco.context:arm64=6.0.1-1 Downloading dependency 80 of 193: libstdc++-14-dev:arm64=14.2.0-19 Downloading dependency 81 of 193: libgmp10:arm64=2:6.3.0+dfsg-3 Downloading dependency 82 of 193: libmd0:arm64=1.1.0-2+b1 Downloading dependency 83 of 193: python3-all-dev:arm64=3.13.3-1 Downloading dependency 84 of 193: libcap2:arm64=1:2.75-6 Downloading dependency 85 of 193: libperl5.40:arm64=5.40.1-3 Downloading dependency 86 of 193: libpython3.13-minimal:arm64=3.13.3-2 Downloading dependency 87 of 193: g++-aarch64-linux-gnu:arm64=4:14.2.0-1 Downloading dependency 88 of 193: init-system-helpers:arm64=1.68 Downloading dependency 89 of 193: python3-typing-extensions:arm64=4.13.2-1 Downloading dependency 90 of 193: python3.13:arm64=3.13.3-2 Downloading dependency 91 of 193: gettext:arm64=0.23.1-1 Downloading dependency 92 of 193: libtsan2:arm64=14.2.0-19 Downloading dependency 93 of 193: libjs-sphinxdoc:arm64=8.1.3-5 Downloading dependency 94 of 193: dpkg-dev:arm64=1.22.18 Downloading dependency 95 of 193: grep:arm64=3.11-4+b1 Downloading dependency 96 of 193: gcc-aarch64-linux-gnu:arm64=4:14.2.0-1 Downloading dependency 97 of 193: po-debconf:arm64=1.0.21+nmu1 Downloading dependency 98 of 193: libpam0g:arm64=1.7.0-3 Downloading dependency 99 of 193: libitm1:arm64=14.2.0-19 Downloading dependency 100 of 193: libblkid1:arm64=2.41-4 Downloading dependency 101 of 193: readline-common:arm64=8.2-6 Downloading dependency 102 of 193: dh-python:arm64=6.20250414 Downloading dependency 103 of 193: libdb5.3t64:arm64=5.3.28+dfsg2-9 Downloading dependency 104 of 193: libacl1:arm64=2.3.2-2+b1 Downloading dependency 105 of 193: libffi8:arm64=3.4.7-1 Downloading dependency 106 of 193: python3-dev:arm64=3.13.3-1 Downloading dependency 107 of 193: ncurses-base:arm64=6.5+20250216-2 Downloading dependency 108 of 193: base-files:arm64=13.7 Downloading dependency 109 of 193: libmpfr6:arm64=4.2.2-1 Downloading dependency 110 of 193: perl-base:arm64=5.40.1-3 Downloading dependency 111 of 193: debianutils:arm64=5.22 Downloading dependency 112 of 193: python3-numpy-dev:arm64=1:2.2.4+ds-1 Downloading dependency 113 of 193: groff-base:arm64=1.23.0-7 Downloading dependency 114 of 193: liblsan0:arm64=14.2.0-19 Downloading dependency 115 of 193: autotools-dev:arm64=20240727.1 Downloading dependency 116 of 193: liblzma5:arm64=5.8.1-1 Downloading dependency 117 of 193: python3.13-minimal:arm64=3.13.3-2 Downloading dependency 118 of 193: libctf-nobfd0:arm64=2.44-3 Downloading dependency 119 of 193: libuuid1:arm64=2.41-4 Downloading dependency 120 of 193: bash:arm64=5.2.37-2 Downloading dependency 121 of 193: libpython3.13-dev:arm64=3.13.3-2 Downloading dependency 122 of 193: bsdutils:arm64=1:2.41-4 Downloading dependency 123 of 193: bsdextrautils:arm64=2.41-4 Downloading dependency 124 of 193: libgdbm6t64:arm64=1.24-2 Downloading dependency 125 of 193: build-essential:arm64=12.12 Downloading dependency 126 of 193: libc6-dev:arm64=2.41-7 Downloading dependency 127 of 193: libuchardet0:arm64=0.0.8-1+b2 Downloading dependency 128 of 193: autoconf:arm64=2.72-3.1 Downloading dependency 129 of 193: libunistring5:arm64=1.3-2 Downloading dependency 130 of 193: base-passwd:arm64=3.6.7 Downloading dependency 131 of 193: linux-libc-dev:arm64=6.12.22-1 Downloading dependency 132 of 193: libboost-dev:arm64=1.83.0.2+b2Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Fetched 3828 B in 0s (28.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4665ux89/libboost-dev_1.83.0.2+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-19 [10.1 MB] Fetched 10.1 MB in 0s (28.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp973_v0cb/g++-14-aarch64-linux-gnu_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libselinux1 arm64 3.8.1-1 [79.4 kB] Fetched 79.4 kB in 0s (568 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8vjlsbwh/libselinux1_3.8.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libc6 arm64 2.41-7 [2483 kB] Fetched 2483 kB in 0s (14.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_q831nyx/libc6_2.41-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 hostname arm64 3.25 [10.8 kB] Fetched 10.8 kB in 0s (93.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvrci5sx3/hostname_3.25_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Fetched 159 kB in 0s (1301 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpauuqg6m0/libreadline8t64_8.2-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 binutils arm64 2.44-3 [262 kB] Fetched 262 kB in 0s (2242 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyc1r97qe/binutils_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 gcc arm64 4:14.2.0-1 [5136 B] Fetched 5136 B in 0s (38.4 kB/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpmmpakgxn/gcc_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libjansson4 arm64 2.14-2+b3 [39.2 kB] Fetched 39.2 kB in 0s (484 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiy5f27vf/libjansson4_2.14-2+b3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (92.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsxp6bfpb/netbase_6.5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 gcc-14 arm64 14.2.0-19 [529 kB] Fetched 529 kB in 0s (5781 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa0l0u9aj/gcc-14_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libubsan1 arm64 14.2.0-19 [1039 kB] Fetched 1039 kB in 0s (6432 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm2dgnz33/libubsan1_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libpython3.13-stdlib arm64 3.13.3-2 [1890 kB] Fetched 1890 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd6j2ljs4/libpython3.13-stdlib_3.13.3-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libtinfo6 arm64 6.5+20250216-2 [341 kB] Fetched 341 kB in 0s (2897 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0q2_hrta/libtinfo6_6.5+20250216-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Fetched 102 kB in 0s (803 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppfkr90ta/dwz_0.15-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libctf0 arm64 2.44-3 [84.2 kB] Fetched 84.2 kB in 0s (1286 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy8pdin9b/libctf0_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libssl3t64 arm64 3.5.0-1 [2747 kB] Fetched 2747 kB in 0s (16.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu804ur_7/libssl3t64_3.5.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 util-linux arm64 2.41-4 [1191 kB] Fetched 1191 kB in 0s (7800 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm9_9hb_0/util-linux_2.41-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libstdc++6 arm64 14.2.0-19 [638 kB] Fetched 638 kB in 0s (5604 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8_ep0pzf/libstdc++6_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 cpp-14 arm64 14.2.0-19 [1276 B] Fetched 1276 B in 0s (10.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9sag4n1u/cpp-14_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Fetched 93.3 kB in 0s (699 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdizmlvw1/libexpat1_2.7.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (90.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1litxxdl/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-19 [9169 kB] Fetched 9169 kB in 0s (39.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0wjgfpdx/cpp-14-aarch64-linux-gnu_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Fetched 10.6 kB in 0s (79.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv2jnauho/python3-zipp_3.21.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250613T202933Z trixie/main arm64 diffutils arm64 1:3.10-4 [378 kB] Fetched 378 kB in 0s (2708 kB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-4_arm64.deb' to '/srv/rebuilderd/tmp/tmphn716o3y/diffutils_3.10-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 gzip arm64 1.13-1 [135 kB] Fetched 135 kB in 0s (2147 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpztnlsw6h/gzip_1.13-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 sed arm64 4.9-2+b1 [326 kB] Fetched 326 kB in 0s (2781 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7v8a2jd5/sed_4.9-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libudev1 arm64 257.5-2 [143 kB] Fetched 143 kB in 0s (1252 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4vgkjhds/libudev1_257.5-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libgomp1 arm64 14.2.0-19 [124 kB] Fetched 124 kB in 0s (1020 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj49yx3cl/libgomp1_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 debhelper all 13.24.2 [919 kB] Fetched 919 kB in 0s (7820 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk4udnt7v/debhelper_13.24.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 gcc-14-base arm64 14.2.0-19 [49.4 kB] Fetched 49.4 kB in 0s (367 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6s3kfui9/gcc-14-base_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Fetched 326 kB in 0s (3009 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrcrtmme/libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libpython3-dev arm64 3.13.3-1 [10.4 kB] Fetched 10.4 kB in 0s (78.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpho04_fsq/libpython3-dev_3.13.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 perl arm64 5.40.1-3 [267 kB] Fetched 267 kB in 0s (1947 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3gzcmmns/perl_5.40.1-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 xz-utils arm64 5.8.1-1 [657 kB] Fetched 657 kB in 0s (4606 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfubqme1q/xz-utils_5.8.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libpam-runtime all 1.7.0-3 [248 kB] Fetched 248 kB in 0s (2228 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_gsv28e4/libpam-runtime_1.7.0-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 dh-exec arm64 0.30+b1 [25.8 kB] Fetched 25.8 kB in 0s (220 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcxjst6hg/dh-exec_0.30+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libaudit-common all 1:4.0.2-2 [12.7 kB] Fetched 12.7 kB in 0s (101 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.2-2_all.deb' to '/srv/rebuilderd/tmp/tmpwky43h55/libaudit-common_4.0.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libcrypt1 arm64 1:4.4.38-1 [91.8 kB] Fetched 91.8 kB in 0s (746 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp5pyn8dm8/libcrypt1_4.4.38-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 make arm64 4.4.1-2 [452 kB] Fetched 452 kB in 0s (3199 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7xocldkt/make_4.4.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libcrypt-dev arm64 1:4.4.38-1 [123 kB] Fetched 123 kB in 0s (947 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_arm64.deb' to '/srv/rebuilderd/tmp/tmppce95len/libcrypt-dev_4.4.38-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 liblastlog2-2 arm64 2.41-4 [28.3 kB] Fetched 28.3 kB in 0s (228 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm36zkyhs/liblastlog2-2_2.41-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 tar arm64 1.35+dfsg-3.1 [802 kB] Fetched 802 kB in 0s (5971 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4p5mc7jh/tar_1.35+dfsg-3.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 patch arm64 2.8-1 [128 kB] Fetched 128 kB in 0s (947 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9ah_148b/patch_2.8-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 ncurses-bin arm64 6.5+20250216-2 [432 kB] Fetched 432 kB in 0s (3044 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjbc9hitp/ncurses-bin_6.5+20250216-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3.13-dev arm64 3.13.3-2 [508 kB] Fetched 508 kB in 0s (1125 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5p3jz5d6/python3.13-dev_3.13.3-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3 arm64 3.13.3-1 [28.2 kB] Fetched 28.2 kB in 0s (201 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy6ud2gm0/python3_3.13.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 mawk arm64 1.3.4.20250131-1 [134 kB] Fetched 134 kB in 0s (1447 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyh3fxcy7/mawk_1.3.4.20250131-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B] Fetched 4832 B in 0s (36.2 kB/s) dpkg-name: info: moved 'cpp-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmps4n8d1ui/cpp-aarch64-linux-gnu_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Fetched 338 kB in 0s (2357 kB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5_arm64.deb' to '/srv/rebuilderd/tmp/tmp90_i8m9y/libmagic-mgc_5.46-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Fetched 13.6 kB in 0s (101 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppxv1djin/python3-autocommand_2.2.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Fetched 241 kB in 0s (2546 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmv1zy9k0/gettext-base_0.23.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libcap-ng0 arm64 0.8.5-4+b1 [17.0 kB] Fetched 17.0 kB in 0s (144 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rl0s8bn/libcap-ng0_0.8.5-4+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-1+b1 [85.1 kB] Fetched 85.1 kB in 0s (705 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpmn779hbe/zlib1g_1.3.dfsg+really1.3.1-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libsqlite3-0 arm64 3.46.1-3 [852 kB] Fetched 852 kB in 0s (2445 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzlg9r_uu/libsqlite3-0_3.46.1-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Fetched 770 kB in 0s (5138 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp70yc9oc8/autopoint_0.23.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Fetched 116 kB in 0s (828 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyk8so6gq/libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libatomic1 arm64 14.2.0-19 [10.1 kB] Fetched 10.1 kB in 0s (76.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptllw9ufj/libatomic1_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libbinutils arm64 2.44-3 [660 kB] Fetched 660 kB in 0s (7489 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7pk57twn/libbinutils_2.44-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libgfortran5 arm64 14.2.0-19 [361 kB] Fetched 361 kB in 0s (2636 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp87i231y9/libgfortran5_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Fetched 90.9 kB in 0s (773 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpufh2y7b0/libdebhelper-perl_13.24.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250430T203420Z trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Fetched 189 kB in 0s (1494 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc40fh4ai/libelf1t64_0.192-4_arm64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_arm64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpkfmvtfld/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture arm64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.7x9AgUeNUM as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.7x9AgUeNUM 127.0.0.1 - - [19/Sep/2025 04:59:01] code 404, message File not found 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:36165 ./ InRelease 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:36165 ./ Release [462 B] 127.0.0.1 - - [19/Sep/2025 04:59:01] code 404, message File not found 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:36165 ./ Release.gpg 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:36165 ./ Packages [236 kB] Fetched 236 kB in 0s (7057 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./gcc-14-base_14.2.0-19_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./libc6_2.41-7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./libgcc-s1_14.2.0-19_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./mawk_1.3.4.20250131-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./base-files_13.7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./libtinfo6_6.5%2b20250216-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./debianutils_5.22_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./bash_5.2.37-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./libcap2_2.75-6_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./libsystemd0_257.5-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./bsdutils_2.41-4_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./libacl1_2.3.2-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./libattr1_2.5.2-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./libgmp10_6.3.0%2bdfsg-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./libpcre2-8-0_10.45-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./libselinux1_3.8.1-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./libzstd1_1.5.7%2bdfsg-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./libssl3t64_3.5.0-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./openssl-provider-legacy_3.5.0-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./coreutils_9.7-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./dash_0.5.12-12_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./diffutils_3.10-4_arm64.deb HTTP/1.1" 200 - 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- [19/Sep/2025 04:59:01] "GET /./ncurses-base_6.5%2b20250216-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:01] "GET /./sysvinit-utils_3.14-4_arm64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.7x9AgUeNUM 127.0.0.1 - - [19/Sep/2025 04:59:05] code 404, message File not found 127.0.0.1 - - [19/Sep/2025 04:59:05] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:36165 ./ InRelease 127.0.0.1 - - [19/Sep/2025 04:59:05] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:36165 ./ Release 127.0.0.1 - - [19/Sep/2025 04:59:05] code 404, message File not found 127.0.0.1 - - [19/Sep/2025 04:59:05] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:36165 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... 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127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./zlib1g-dev_1.3.dfsg%2breally1.3.1-1%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./libexpat1-dev_2.7.1-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./libpython3.13_3.13.3-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./libpython3.13-dev_3.13.3-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./libpython3-dev_3.13.3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./libpython3-all-dev_3.13.3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./libboost1.83-dev_1.83.0-4.2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./python3.13-dev_3.13.3-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./libjs-jquery_3.6.1%2bdfsg%2b%7e3.5.14-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./libjs-underscore_1.13.4%7edfsg%2b%7e1.11.4-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./libjs-sphinxdoc_8.1.3-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./python3-dev_3.13.3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./python3-all-dev_3.13.3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./dh-python_6.20250414_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./libboost-dev_1.83.0.2%2bb2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./dh-exec_0.30%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [19/Sep/2025 04:59:13] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpkfmvtfld/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.7x9AgUeNUM Reading package lists... Building dependency tree... Reading state information... swig is already the newest version (4.3.0-1). swig set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. libmount1 is already the newest version (2.41-4). bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. libsframe1 is already the newest version (2.44-3). libsframe1 set to manually installed. python3-all is already the newest version (3.13.3-1). python3-all set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. libtool is already the newest version (2.5.4-4). libtool set to manually installed. automake is already the newest version (1:1.17-4). automake set to manually installed. file is already the newest version (1:5.46-5). file set to manually installed. tzdata is already the newest version (2025b-2). tzdata set to manually installed. python3-minimal is already the newest version (3.13.3-1). python3-minimal set to manually installed. libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. libsystemd0 is already the newest version (257.5-2). dh-strip-nondeterminism is already the newest version (1.14.1-2). dh-strip-nondeterminism set to manually installed. binutils-aarch64-linux-gnu is already the newest version (2.44-3). binutils-aarch64-linux-gnu set to manually installed. python3-pkg-resources is already the newest version (78.1.0-1.2). python3-pkg-resources set to manually installed. man-db is already the newest version (2.13.0-1). man-db set to manually installed. libgdbm-compat4t64 is already the newest version (1.24-2). libgdbm-compat4t64 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.14.1-2). libfile-stripnondeterminism-perl set to manually installed. libgcc-14-dev is already the newest version (14.2.0-19). libgcc-14-dev set to manually installed. libgcc-s1 is already the newest version (14.2.0-19). findutils is already the newest version (4.10.0-3). libsimde-dev is already the newest version (0.8.2-3). libsimde-dev set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. libaudit1 is already the newest version (1:4.0.2-2+b2). debconf is already the newest version (1.5.91). libpam-modules-bin is already the newest version (1.7.0-3). python3-setuptools is already the newest version (78.1.0-1.2). python3-setuptools set to manually installed. libmagic1t64 is already the newest version (1:5.46-5). libmagic1t64 set to manually installed. architecture-properties is already the newest version (0.2.6). architecture-properties set to manually installed. libexpat1-dev is already the newest version (2.7.1-1). libexpat1-dev set to manually installed. libc-dev-bin is already the newest version (2.41-7). libc-dev-bin set to manually installed. cpp is already the newest version (4:14.2.0-1). cpp set to manually installed. python3-typeguard is already the newest version (4.4.2-1). python3-typeguard set to manually installed. libgprofng0 is already the newest version (2.44-3). libgprofng0 set to manually installed. libpython3.13 is already the newest version (3.13.3-2). libpython3.13 set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. libpython3-stdlib is already the newest version (3.13.3-1). libpython3-stdlib set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-3). perl-modules-5.40 set to manually installed. libdebconfclient0 is already the newest version (0.278). libattr1 is already the newest version (1:2.5.2-3). libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-0.4). libxml2 set to manually installed. libpython3-all-dev is already the newest version (3.13.3-1). libpython3-all-dev set to manually installed. dash is already the newest version (0.5.12-12). libhwasan0 is already the newest version (14.2.0-19). libhwasan0 set to manually installed. libdpkg-perl is already the newest version (1.22.18). libdpkg-perl set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). m4 is already the newest version (1.4.19-8). m4 set to manually installed. gcc-14-aarch64-linux-gnu is already the newest version (14.2.0-19). gcc-14-aarch64-linux-gnu set to manually installed. libncursesw6 is already the newest version (6.5+20250216-2). libncursesw6 set to manually installed. libpam-modules is already the newest version (1.7.0-3). binutils-common is already the newest version (2.44-3). binutils-common set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1+b1). rpcsvc-proto set to manually installed. libsmartcols1 is already the newest version (2.41-4). libc-bin is already the newest version (2.41-7). libseccomp2 is already the newest version (2.6.0-2). libseccomp2 set to manually installed. python3-inflect is already the newest version (7.3.1-2). python3-inflect set to manually installed. g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libpcre2-8-0 is already the newest version (10.45-1). python3-more-itertools is already the newest version (10.6.0-1). python3-more-itertools set to manually installed. libasan8 is already the newest version (14.2.0-19). libasan8 set to manually installed. coreutils is already the newest version (9.7-2). libcc1-0 is already the newest version (14.2.0-19). libcc1-0 set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-1). sysvinit-utils is already the newest version (3.14-4). sensible-utils is already the newest version (0.0.24). sensible-utils set to manually installed. libmpc3 is already the newest version (1.3.1-1+b3). libmpc3 set to manually installed. media-types is already the newest version (13.0.0). media-types set to manually installed. liblapack3 is already the newest version (3.12.1-2). liblapack3 set to manually installed. dpkg is already the newest version (1.22.18). libboost1.83-dev is already the newest version (1.83.0-4.2). libboost1.83-dev set to manually installed. libblas3 is already the newest version (3.12.1-2). libblas3 set to manually installed. g++-14 is already the newest version (14.2.0-19). g++-14 set to manually installed. openssl-provider-legacy is already the newest version (3.5.0-1). python3-numpy is already the newest version (1:2.2.4+ds-1). python3-numpy set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. python3-jaraco.context is already the newest version (6.0.1-1). python3-jaraco.context set to manually installed. libstdc++-14-dev is already the newest version (14.2.0-19). libstdc++-14-dev set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-3). libmd0 is already the newest version (1.1.0-2+b1). python3-all-dev is already the newest version (3.13.3-1). python3-all-dev set to manually installed. libcap2 is already the newest version (1:2.75-6). libperl5.40 is already the newest version (5.40.1-3). libperl5.40 set to manually installed. libpython3.13-minimal is already the newest version (3.13.3-2). libpython3.13-minimal set to manually installed. g++-aarch64-linux-gnu is already the newest version (4:14.2.0-1). g++-aarch64-linux-gnu set to manually installed. init-system-helpers is already the newest version (1.68). python3-typing-extensions is already the newest version (4.13.2-1). python3-typing-extensions set to manually installed. python3.13 is already the newest version (3.13.3-2). python3.13 set to manually installed. gettext is already the newest version (0.23.1-1). gettext set to manually installed. libtsan2 is already the newest version (14.2.0-19). libtsan2 set to manually installed. libjs-sphinxdoc is already the newest version (8.1.3-5). libjs-sphinxdoc set to manually installed. dpkg-dev is already the newest version (1.22.18). dpkg-dev set to manually installed. grep is already the newest version (3.11-4+b1). gcc-aarch64-linux-gnu is already the newest version (4:14.2.0-1). gcc-aarch64-linux-gnu set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libpam0g is already the newest version (1.7.0-3). libitm1 is already the newest version (14.2.0-19). libitm1 set to manually installed. libblkid1 is already the newest version (2.41-4). readline-common is already the newest version (8.2-6). readline-common set to manually installed. dh-python is already the newest version (6.20250414). dh-python set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). libacl1 is already the newest version (2.3.2-2+b1). libffi8 is already the newest version (3.4.7-1). libffi8 set to manually installed. python3-dev is already the newest version (3.13.3-1). python3-dev set to manually installed. ncurses-base is already the newest version (6.5+20250216-2). base-files is already the newest version (13.7). libmpfr6 is already the newest version (4.2.2-1). libmpfr6 set to manually installed. perl-base is already the newest version (5.40.1-3). debianutils is already the newest version (5.22). python3-numpy-dev is already the newest version (1:2.2.4+ds-1). python3-numpy-dev set to manually installed. groff-base is already the newest version (1.23.0-7). groff-base set to manually installed. liblsan0 is already the newest version (14.2.0-19). liblsan0 set to manually installed. autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. liblzma5 is already the newest version (5.8.1-1). python3.13-minimal is already the newest version (3.13.3-2). python3.13-minimal set to manually installed. libctf-nobfd0 is already the newest version (2.44-3). libctf-nobfd0 set to manually installed. libuuid1 is already the newest version (2.41-4). bash is already the newest version (5.2.37-2). libpython3.13-dev is already the newest version (3.13.3-2). libpython3.13-dev set to manually installed. bsdutils is already the newest version (1:2.41-4). bsdextrautils is already the newest version (2.41-4). bsdextrautils set to manually installed. libgdbm6t64 is already the newest version (1.24-2). libgdbm6t64 set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. libc6-dev is already the newest version (2.41-7). libc6-dev set to manually installed. libuchardet0 is already the newest version (0.0.8-1+b2). libuchardet0 set to manually installed. autoconf is already the newest version (2.72-3.1). autoconf set to manually installed. libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. base-passwd is already the newest version (3.6.7). linux-libc-dev is already the newest version (6.12.22-1). linux-libc-dev set to manually installed. libboost-dev is already the newest version (1.83.0.2+b2). libboost-dev set to manually installed. g++-14-aarch64-linux-gnu is already the newest version (14.2.0-19). g++-14-aarch64-linux-gnu set to manually installed. libselinux1 is already the newest version (3.8.1-1). libc6 is already the newest version (2.41-7). hostname is already the newest version (3.25). libreadline8t64 is already the newest version (8.2-6). libreadline8t64 set to manually installed. binutils is already the newest version (2.44-3). binutils set to manually installed. gcc is already the newest version (4:14.2.0-1). gcc set to manually installed. libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. gcc-14 is already the newest version (14.2.0-19). gcc-14 set to manually installed. libubsan1 is already the newest version (14.2.0-19). libubsan1 set to manually installed. libpython3.13-stdlib is already the newest version (3.13.3-2). libpython3.13-stdlib set to manually installed. libtinfo6 is already the newest version (6.5+20250216-2). dwz is already the newest version (0.15-1+b1). dwz set to manually installed. libctf0 is already the newest version (2.44-3). libctf0 set to manually installed. libssl3t64 is already the newest version (3.5.0-1). util-linux is already the newest version (2.41-4). libstdc++6 is already the newest version (14.2.0-19). libstdc++6 set to manually installed. cpp-14 is already the newest version (14.2.0-19). cpp-14 set to manually installed. libexpat1 is already the newest version (2.7.1-1). libexpat1 set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. cpp-14-aarch64-linux-gnu is already the newest version (14.2.0-19). cpp-14-aarch64-linux-gnu set to manually installed. python3-zipp is already the newest version (3.21.0-1). python3-zipp set to manually installed. diffutils is already the newest version (1:3.10-4). gzip is already the newest version (1.13-1). sed is already the newest version (4.9-2+b1). libudev1 is already the newest version (257.5-2). libgomp1 is already the newest version (14.2.0-19). libgomp1 set to manually installed. debhelper is already the newest version (13.24.2). debhelper set to manually installed. gcc-14-base is already the newest version (14.2.0-19). libjs-jquery is already the newest version (3.6.1+dfsg+~3.5.14-1). libjs-jquery set to manually installed. libpython3-dev is already the newest version (3.13.3-1). libpython3-dev set to manually installed. perl is already the newest version (5.40.1-3). perl set to manually installed. xz-utils is already the newest version (5.8.1-1). xz-utils set to manually installed. libpam-runtime is already the newest version (1.7.0-3). dh-exec is already the newest version (0.30+b1). dh-exec set to manually installed. libaudit-common is already the newest version (1:4.0.2-2). libcrypt1 is already the newest version (1:4.4.38-1). make is already the newest version (4.4.1-2). make set to manually installed. libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. liblastlog2-2 is already the newest version (2.41-4). tar is already the newest version (1.35+dfsg-3.1). patch is already the newest version (2.8-1). patch set to manually installed. ncurses-bin is already the newest version (6.5+20250216-2). python3.13-dev is already the newest version (3.13.3-2). python3.13-dev set to manually installed. python3 is already the newest version (3.13.3-1). python3 set to manually installed. mawk is already the newest version (1.3.4.20250131-1). cpp-aarch64-linux-gnu is already the newest version (4:14.2.0-1). cpp-aarch64-linux-gnu set to manually installed. libmagic-mgc is already the newest version (1:5.46-5). libmagic-mgc set to manually installed. python3-autocommand is already the newest version (2.2.2-3). python3-autocommand set to manually installed. gettext-base is already the newest version (0.23.1-1). gettext-base set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b1). zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). libsqlite3-0 is already the newest version (3.46.1-3). autopoint is already the newest version (0.23.1-1). autopoint set to manually installed. libjs-underscore is already the newest version (1.13.4~dfsg+~1.11.4-3). libjs-underscore set to manually installed. libatomic1 is already the newest version (14.2.0-19). libatomic1 set to manually installed. libbinutils is already the newest version (2.44-3). libbinutils set to manually installed. libgfortran5 is already the newest version (14.2.0-19). libgfortran5 set to manually installed. libdebhelper-perl is already the newest version (13.24.2). libdebhelper-perl set to manually installed. libelf1t64 is already the newest version (0.192-4). libelf1t64 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.7x9AgUeNUM (Reading database ... 35443 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.7x9AgUeNUM I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.7x9AgUeNUM I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.7x9AgUeNUM... I: success in 45.3551 seconds Downloading dependency 133 of 193: g++-14-aarch64-linux-gnu:arm64=14.2.0-19 Downloading dependency 134 of 193: libselinux1:arm64=3.8.1-1 Downloading dependency 135 of 193: libc6:arm64=2.41-7 Downloading dependency 136 of 193: hostname:arm64=3.25 Downloading dependency 137 of 193: libreadline8t64:arm64=8.2-6 Downloading dependency 138 of 193: binutils:arm64=2.44-3 Downloading dependency 139 of 193: gcc:arm64=4:14.2.0-1 Downloading dependency 140 of 193: libjansson4:arm64=2.14-2+b3 Downloading dependency 141 of 193: netbase:arm64=6.5 Downloading dependency 142 of 193: gcc-14:arm64=14.2.0-19 Downloading dependency 143 of 193: libubsan1:arm64=14.2.0-19 Downloading dependency 144 of 193: libpython3.13-stdlib:arm64=3.13.3-2 Downloading dependency 145 of 193: libtinfo6:arm64=6.5+20250216-2 Downloading dependency 146 of 193: dwz:arm64=0.15-1+b1 Downloading dependency 147 of 193: libctf0:arm64=2.44-3 Downloading dependency 148 of 193: libssl3t64:arm64=3.5.0-1 Downloading dependency 149 of 193: util-linux:arm64=2.41-4 Downloading dependency 150 of 193: libstdc++6:arm64=14.2.0-19 Downloading dependency 151 of 193: cpp-14:arm64=14.2.0-19 Downloading dependency 152 of 193: libexpat1:arm64=2.7.1-1 Downloading dependency 153 of 193: python3-jaraco.functools:arm64=4.1.0-1 Downloading dependency 154 of 193: cpp-14-aarch64-linux-gnu:arm64=14.2.0-19 Downloading dependency 155 of 193: python3-zipp:arm64=3.21.0-1 Downloading dependency 156 of 193: diffutils:arm64=1:3.10-4 Downloading dependency 157 of 193: gzip:arm64=1.13-1 Downloading dependency 158 of 193: sed:arm64=4.9-2+b1 Downloading dependency 159 of 193: libudev1:arm64=257.5-2 Downloading dependency 160 of 193: libgomp1:arm64=14.2.0-19 Downloading dependency 161 of 193: debhelper:arm64=13.24.2 Downloading dependency 162 of 193: gcc-14-base:arm64=14.2.0-19 Downloading dependency 163 of 193: libjs-jquery:arm64=3.6.1+dfsg+~3.5.14-1 Downloading dependency 164 of 193: libpython3-dev:arm64=3.13.3-1 Downloading dependency 165 of 193: perl:arm64=5.40.1-3 Downloading dependency 166 of 193: xz-utils:arm64=5.8.1-1 Downloading dependency 167 of 193: libpam-runtime:arm64=1.7.0-3 Downloading dependency 168 of 193: dh-exec:arm64=0.30+b1 Downloading dependency 169 of 193: libaudit-common:arm64=1:4.0.2-2 Downloading dependency 170 of 193: libcrypt1:arm64=1:4.4.38-1 Downloading dependency 171 of 193: make:arm64=4.4.1-2 Downloading dependency 172 of 193: libcrypt-dev:arm64=1:4.4.38-1 Downloading dependency 173 of 193: liblastlog2-2:arm64=2.41-4 Downloading dependency 174 of 193: tar:arm64=1.35+dfsg-3.1 Downloading dependency 175 of 193: patch:arm64=2.8-1 Downloading dependency 176 of 193: ncurses-bin:arm64=6.5+20250216-2 Downloading dependency 177 of 193: python3.13-dev:arm64=3.13.3-2 Downloading dependency 178 of 193: python3:arm64=3.13.3-1 Downloading dependency 179 of 193: mawk:arm64=1.3.4.20250131-1 Downloading dependency 180 of 193: cpp-aarch64-linux-gnu:arm64=4:14.2.0-1 Downloading dependency 181 of 193: libmagic-mgc:arm64=1:5.46-5 Downloading dependency 182 of 193: python3-autocommand:arm64=2.2.2-3 Downloading dependency 183 of 193: gettext-base:arm64=0.23.1-1 Downloading dependency 184 of 193: libcap-ng0:arm64=0.8.5-4+b1 Downloading dependency 185 of 193: zlib1g:arm64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 186 of 193: libsqlite3-0:arm64=3.46.1-3 Downloading dependency 187 of 193: autopoint:arm64=0.23.1-1 Downloading dependency 188 of 193: libjs-underscore:arm64=1.13.4~dfsg+~1.11.4-3 Downloading dependency 189 of 193: libatomic1:arm64=14.2.0-19 Downloading dependency 190 of 193: libbinutils:arm64=2.44-3 Downloading dependency 191 of 193: libgfortran5:arm64=14.2.0-19 Downloading dependency 192 of 193: libdebhelper-perl:arm64=13.24.2 Downloading dependency 193 of 193: libelf1t64:arm64=0.192-4 env --chdir=/srv/rebuilderd/tmp/rebuilderd2cs9Ag/out DEB_BUILD_OPTIONS=parallel=8 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1745235607 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildbu4WX7/debrebuild.sbuildrc.NKuwIHrJVydQ sbuild --build=arm64 --host=arm64 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildbu4WX7/debrebuild.tar.w7LOXiUUs0sX --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=consensuscore-1.1.1+dfsg /srv/rebuilderd/tmp/rebuilderd2cs9Ag/inputs/consensuscore_1.1.1+dfsg-8.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u1 (16 August 2025) on codethink02-arm64 +==============================================================================+ | consensuscore 1.1.1+dfsg-8 (arm64) Fri, 19 Sep 2025 03:59:47 +0000 | +==============================================================================+ Package: consensuscore Version: 1.1.1+dfsg-8 Source Version: 1.1.1+dfsg-8 Distribution: unstable Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildbu4WX7/debrebuild.tar.w7LOXiUUs0sX to /srv/rebuilderd/tmp/tmp.sbuild.TTB9OQ9vdc... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Fri, 19 Sep 2025 03:59:54 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderd2cs9Ag/inputs/consensuscore_1.1.1+dfsg-8.dsc exists in /srv/rebuilderd/tmp/rebuilderd2cs9Ag/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 19 Sep 2025 03:59:56 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, dh-sequence-python3, dh-exec, libboost-dev, swig, python3-setuptools, python3-all-dev, python3-numpy, python3-numpy-dev, libsimde-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, dh-sequence-python3, dh-exec, libboost-dev, swig, python3-setuptools, python3-all-dev, python3-numpy, python3-numpy-dev, libsimde-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-bYE7eg/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Fri, 19 Sep 2025 04:00:02 +0000 | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment Fri, 19 Sep 2025 04:00:03 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) arm64 (aarch64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.18 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-7 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 linux-libc-dev_6.12.22-1 Package versions: architecture-properties_0.2.6 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-1 autotools-dev_20240727.1 base-files_13.7 base-passwd_3.6.7 bash_5.2.37-2 binutils_2.44-3 binutils-aarch64-linux-gnu_2.44-3 binutils-common_2.44-3 bsdextrautils_2.41-4 bsdutils_1:2.41-4 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-2 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-aarch64-linux-gnu_14.2.0-19 cpp-aarch64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debianutils_5.22 dh-autoreconf_20 dh-exec_0.30+b1 dh-python_6.20250414 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dpkg_1.22.18 dpkg-dev_1.22.18 dwz_0.15-1+b1 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-aarch64-linux-gnu_14.2.0-19 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-aarch64-linux-gnu_14.2.0-19 gcc-14-base_14.2.0-19 gcc-aarch64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4+b1 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libatomic1_14.2.0-19 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblas3_3.12.1-2 libblkid1_2.41-4 libboost-dev_1.83.0.2+b2 libboost1.83-dev_1.83.0-4.2 libbz2-1.0_1.0.8-6 libc-bin_2.41-7 libc-dev-bin_2.41-7 libc6_2.41-7 libc6-dev_2.41-7 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-6 libcc1-0_14.2.0-19 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.278 libdebhelper-perl_13.24.2 libdpkg-perl_1.22.18 libelf1t64_0.192-4 libexpat1_2.7.1-1 libexpat1-dev_2.7.1-1 libffi8_3.4.7-1 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.2.0-19 libgcc-s1_14.2.0-19 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgfortran5_14.2.0-19 libgmp10_2:6.3.0+dfsg-3 libgomp1_14.2.0-19 libgprofng0_2.44-3 libhwasan0_14.2.0-19 libisl23_0.27-1 libitm1_14.2.0-19 libjansson4_2.14-2+b3 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_8.1.3-5 libjs-underscore_1.13.4~dfsg+~1.11.4-3 liblapack3_3.12.1-2 liblastlog2-2_2.41-4 liblsan0_14.2.0-19 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41-4 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-3 libpipeline1_1.5.8-1 libpython3-all-dev_3.13.3-1 libpython3-dev_3.13.3-1 libpython3-stdlib_3.13.3-1 libpython3.13_3.13.3-2 libpython3.13-dev_3.13.3-2 libpython3.13-minimal_3.13.3-2 libpython3.13-stdlib_3.13.3-2 libreadline8t64_8.2-6 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsframe1_2.44-3 libsimde-dev_0.8.2-3 libsmartcols1_2.41-4 libsqlite3-0_3.46.1-3 libssl3t64_3.5.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 libsystemd0_257.5-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libuchardet0_0.0.8-1+b2 libudev1_257.5-2 libunistring5_1.3-2 libuuid1_2.41-4 libxml2_2.12.7+dfsg+really2.9.14-0.4 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.22-1 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.0-1 mawk_1.3.4.20250131-1 media-types_13.0.0 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 openssl-provider-legacy_3.5.0-1 patch_2.8-1 perl_5.40.1-3 perl-base_5.40.1-3 perl-modules-5.40_5.40.1-3 po-debconf_1.0.21+nmu1 python3_3.13.3-1 python3-all_3.13.3-1 python3-all-dev_3.13.3-1 python3-autocommand_2.2.2-3 python3-dev_3.13.3-1 python3-inflect_7.3.1-2 python3-jaraco.context_6.0.1-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-minimal_3.13.3-1 python3-more-itertools_10.6.0-1 python3-numpy_1:2.2.4+ds-1 python3-numpy-dev_1:2.2.4+ds-1 python3-pkg-resources_78.1.0-1.2 python3-setuptools_78.1.0-1.2 python3-typeguard_4.4.2-1 python3-typing-extensions_4.13.2-1 python3-zipp_3.21.0-1 python3.13_3.13.3-2 python3.13-dev_3.13.3-2 python3.13-minimal_3.13.3-2 readline-common_8.2-6 rpcsvc-proto_1.4.3-1+b1 sed_4.9-2+b1 sensible-utils_0.0.24 swig_4.3.0-1 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-2 util-linux_2.41-4 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Fri, 19 Sep 2025 04:00:03 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: consensuscore Binary: libconsensuscore-dev, python3-pbconsensuscore Architecture: any Version: 1.1.1+dfsg-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/PacificBiosciences/ConsensusCore Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/consensuscore Vcs-Git: https://salsa.debian.org/med-team/consensuscore.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), architecture-is-64-bit [!i386], architecture-is-little-endian, dh-sequence-python3, dh-exec, libboost-dev, swig, python3-setuptools, python3-all-dev, python3-numpy, python3-numpy-dev, libsimde-dev Package-List: libconsensuscore-dev deb libdevel optional arch=any python3-pbconsensuscore deb python optional arch=any Checksums-Sha1: 06118ce273ef10180336ab071fd86dc60aea7168 363936 consensuscore_1.1.1+dfsg.orig.tar.xz 295d4089d3f91afce437f8da9d4e96e85a8e4355 10280 consensuscore_1.1.1+dfsg-8.debian.tar.xz Checksums-Sha256: 47865e3769e2d6647003f70ffce68f8a5b2f69a6ae04ff27d106b3ec84660d82 363936 consensuscore_1.1.1+dfsg.orig.tar.xz c6bca19d3f472d6c97567c42c6c677b2183a2d8086fd369e80cf46e9d781ef83 10280 consensuscore_1.1.1+dfsg-8.debian.tar.xz Files: 17991299008d1c01e25ce3984b7fe7bd 363936 consensuscore_1.1.1+dfsg.orig.tar.xz 5d616d8f06b526982012d298c45aa7d6 10280 consensuscore_1.1.1+dfsg-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmgGNmIRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBq4XA//bcI91SPBNTxHy/quKBMfF4T3ZZiWAHAF FVfbF6EbJqJILDeaXYGh38hdhXzTco/obJG7M7vH2SewPmF0A0juo7gOaWo/RO9o ovi13jIXzyYaYd0GOlUL1YJ5THSphPK0Mv9nwhRUZ6FjWCA6jI9ejzvzfcmPf++n sruEvyW0dTr+/921DUgMDRy0PbLs0V1sPZk3/OpqiRoMOPpiTLXU/SSIQDeZN0qX YJpgGs1SuOaAiu8hQo3vcM6xF4XDVxE5FP4OHENS807gDesbGIjisAuYDks2vZyj WZErGEgB9BoKwvbPUEWgJkiD6niuhvJUwSupz5I9TgO86zNspahW/V/SVHXbIl+D 7iaou+b3cFKVZ+u3hICuGNYVrOyFwQWrOwLKALatvDOtn7D253dlI6dftnGCjhs5 vJ3D3ezkNDRb/vrzoIIMROqtMfkd0kVDC/mbTWCceYbxdXQZovzOlc6Ms2Cw5xDZ 6QeAJ6owWy4Mzd5MX2K1xf+YsIh/et2C9BaEx6u1aIjPUoIu5o8XfItYcelD8YTY XAE3eRz+77+slNC1BcxgD9mll+oK6Fb9xCM5OhCwBscBw0ZyhO1ERN9NwD9YvT22 wOVn+EwkhzzLkjSxXRQ6EqrCVpcfNrI0g0J9CqwDoCjf2n+E8GsJ0skHwRjrA312 VptyoWtLIA8= =CHSG -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./consensuscore_1.1.1+dfsg-8.dsc: unsupported subcommand dpkg-source: info: extracting consensuscore in /build/reproducible-path/consensuscore-1.1.1+dfsg dpkg-source: info: unpacking consensuscore_1.1.1+dfsg.orig.tar.xz dpkg-source: info: unpacking consensuscore_1.1.1+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying check_boost_version.patch dpkg-source: info: applying sequence_setuptools.patch dpkg-source: info: applying portable_simd.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1745235607 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package consensuscore dpkg-buildpackage: info: source version 1.1.1+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild debian/rules execute_before_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' ! test -f src/SWIG/numpy.i.orig || mv -v src/SWIG/numpy.i.orig src/SWIG/numpy.i make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean WARNING: '' not a valid package name; please use only .-separated package names in setup.py running clean removing '/build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.13_pbconsensuscore/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config WARNING: '' not a valid package name; please use only .-separated package names in setup.py running config debian/rules execute_before_dh_auto_build make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' test -f src/SWIG/numpy.i.orig || mv -v src/SWIG/numpy.i src/SWIG/numpy.i.orig renamed 'src/SWIG/numpy.i' -> 'src/SWIG/numpy.i.orig' cp /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/numpy.i src/SWIG/numpy.i make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig/4.3.0 PYTHON_INCLUDE = /usr/include/python3.13 NUMPY_INCLUDE = /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Cpp.mk -j8 make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaGraphImpl.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaConsensus.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaGraph.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaGraphTraversals.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/RangeFinder.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Statistics/Binomial.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Matrix/SparseMatrix.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Matrix/DenseMatrix.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.o -MM src/C++/Matrix/SparseMatrix.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.o -MM src/C++/Poa/PoaConsensus.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Read.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Features.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.o -MM src/C++/Matrix/DenseMatrix.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Version.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.o -MM src/C++/Poa/PoaGraph.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Edna/EdnaCounts.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.o -MM src/C++/Features.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Checksum.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.o In file included from /usr/include/simde/x86/sse2.h:35, from /usr/include/simde/x86/sse3.h:30, from src/C++/Edna/EdnaCounts.cpp:4: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.o -MM src/C++/Version.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.o -MM src/C++/Read.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.o -MM src/C++/Poa/RangeFinder.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/PairwiseAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.o -MM src/C++/Edna/EdnaCounts.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/AffineAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/LinearAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/AlignConfig.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o -MM src/C++/Align/AlignConfig.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.o -MM src/C++/Statistics/Binomial.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/QuiverConsensus.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/detail/RecursorBase.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.o -MM src/C++/Align/AffineAlignment.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.o -MM src/C++/Align/PairwiseAlignment.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.o -MM src/C++/Poa/PoaGraphTraversals.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/MutationEnumerator.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.o -MM src/C++/Align/LinearAlignment.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/ReadScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.o -MM src/C++/Checksum.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/QuiverConfig.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/MultiReadMutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.o In file included from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:5, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/MutationScorer.hpp:12, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/MultiReadMutationScorer.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/QuiverConsensus.hpp:6, from src/C++/Quiver/QuiverConsensus.cpp:3: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/simde/x86/sse3.h:30, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/QvEvaluator.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:6: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/SimpleRecursor.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.o In file included from /usr/include/simde/x86/sse2.h:35, from /usr/include/simde/x86/sse3.h:30, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Edna/EdnaEvaluator.hpp:6, from src/C++/Quiver/detail/RecursorBase.cpp:6: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.o -MM src/C++/Quiver/MutationEnumerator.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.d In file included from /usr/include/simde/x86/sse2.h:35, from /usr/include/simde/x86/sse3.h:30, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/QvEvaluator.hpp:6, from src/C++/Quiver/ReadScorer.cpp:7: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/SseRecursor.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.o -MM src/C++/Quiver/QuiverConfig.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/Diploid.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.o In file included from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:5, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/MutationScorer.hpp:12, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/MultiReadMutationScorer.hpp:6, from src/C++/Quiver/MultiReadMutationScorer.cpp:5: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/simde/x86/sse3.h:30, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/QvEvaluator.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:6: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:5, from src/C++/Quiver/SimpleRecursor.cpp:3: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/simde/x86/sse3.h:30, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/QvEvaluator.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:6: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.o -MM src/C++/Quiver/ReadScorer.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/MutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.o -MM src/C++/Quiver/detail/RecursorBase.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.d In file included from /usr/include/simde/x86/sse2.h:35, from /usr/include/simde/x86/sse3.h:30, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Edna/EdnaEvaluator.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SseRecursor.hpp:5, from src/C++/Quiver/SseRecursor.cpp:3: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.o -MM src/C++/Quiver/Diploid.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Feature.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Logging/Logging.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.o -MM src/C++/Logging/Logging.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Sequence.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.o In file included from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:5, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/MutationScorer.hpp:12, from src/C++/Quiver/MutationScorer.cpp:3: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf log_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:182:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 182 | x, *reinterpret_cast(_ps_min_norm_pos)); /* cut off denormalized stuff */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:193:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 193 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_mant_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/simde/x86/sse3.h:30, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/QvEvaluator.hpp:6, from /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/SimpleRecursor.hpp:6: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:203:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | emm0 = _mm_sub_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf exp_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:347:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | emm0 = _mm_add_epi32(emm0, *reinterpret_cast(_pi32_0x7f)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf sin_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:466:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 466 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:468:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 468 | sign_bit = _mm_and_ps(sign_bit, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:478:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 478 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:479:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 479 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:482:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 482 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:490:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 490 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘v4sf cos_ps(v4sf)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:582:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 582 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:591:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 591 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:592:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 592 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:595:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 595 | emm2 = _mm_sub_epi32(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:598:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 598 | emm0 = _mm_andnot_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:601:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 601 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h: In function ‘void sincos_ps(v4sf, v4sf*, v4sf*)’: /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:703:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 703 | x = _mm_and_ps(x, *reinterpret_cast(_ps_inv_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:705:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 705 | sign_bit_sin = _mm_and_ps(sign_bit_sin, *reinterpret_cast(_ps_sign_mask)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:715:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 715 | emm2 = _mm_add_epi32(emm2, *reinterpret_cast(_pi32_1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:716:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 716 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_inv1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:722:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 722 | emm0 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:727:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 727 | emm2 = _mm_and_si128(emm2, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:778:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 778 | emm4 = _mm_sub_epi32(emm4, *reinterpret_cast(_pi32_2)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Quiver/detail/sse_mathfun.h:779:36: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 779 | emm4 = _mm_andnot_si128(emm4, *reinterpret_cast(_pi32_4)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SimpleRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:190:16: required from here 190 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:191:16: required from here 191 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SimpleRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:192:16: required from here 192 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SimpleRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:193:16: required from here 193 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:194:16: required from here 194 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:195:16: required from here 195 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::EdnaEvaluator]’: src/C++/Quiver/MutationScorer.cpp:196:16: required from here 196 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.o -MM src/C++/Feature.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.o -MM src/C++/Sequence.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Coverage.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Mutation.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.o -MM src/C++/Quiver/QuiverConsensus.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.o -MM src/C++/Coverage.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Utils.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.o -MM src/C++/Utils.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.o -MM src/C++/Quiver/MultiReadMutationScorer.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.o -MM src/C++/Poa/PoaGraphImpl.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.o -MM src/C++/Quiver/MutationScorer.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.o -MM src/C++/Mutation.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.o -MM src/C++/Quiver/SimpleRecursor.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.o -MM src/C++/Quiver/SseRecursor.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.d ar crs /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.o touch /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Python.mk make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.3.0 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.13 -I /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' /usr/bin/make test make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' /usr/bin/make -f make/Cpp.mk -j8 make[3]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[3]: '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a' is up to date. make[3]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[3]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestCoverage.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestCoverage.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMatrixFacades.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMatrixFacades.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestPoaConsensus.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPoaConsensus.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMutationEnumerator.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationEnumerator.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestPairwiseAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPairwiseAlignment.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMultiReadMutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMultiReadMutationScorer.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestRecursors.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestRecursors.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationScorer.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestDiploidQuiver.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestDiploidQuiver.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestSparseVector.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestSparseVector.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMutations.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutations.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestQvEvaluator.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestQvEvaluator.o In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9, from /usr/include/boost/bind/bind.hpp:24, from /usr/include/boost/bind.hpp:29, from /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestQvEvaluator.cpp:5: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/ParameterSettings.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/ParameterSettings.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestCoverage.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMatrixFacades.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPoaConsensus.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationEnumerator.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPairwiseAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMultiReadMutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestRecursors.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestDiploidQuiver.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestSparseVector.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutations.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestQvEvaluator.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/ParameterSettings.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 /build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0/gmock-gtest-all.cc /build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0/gmock_main.cc -lpthread -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/test-runner GTEST_OUTPUT="xml:tests-summary.xml" /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/test-runner Running main() from gmock_main.cc [==========] Running 158 tests from 29 test cases. [----------] Global test environment set-up. [----------] 3 tests from CoverageTests [ RUN ] CoverageTests.CoverageInWindowTest [ OK ] CoverageTests.CoverageInWindowTest (1 ms) [ RUN ] CoverageTests.CoveredIntervalsTest [ OK ] CoverageTests.CoveredIntervalsTest (0 ms) [ RUN ] CoverageTests.CoveredIntervalsTest2 [ OK ] CoverageTests.CoveredIntervalsTest2 (0 ms) [----------] 3 tests from CoverageTests (1 ms total) [----------] 11 tests from MatrixTest/0, where TypeParam = ConsensusCore::DenseMatrix [ RUN ] MatrixTest/0.Basic [ OK ] MatrixTest/0.Basic (0 ms) [ RUN ] MatrixTest/0.Nullability [ OK ] MatrixTest/0.Nullability (0 ms) [ RUN ] MatrixTest/0.Ranges [ OK ] MatrixTest/0.Ranges (0 ms) [ RUN ] MatrixTest/0.IsColumnEmpty [ OK ] MatrixTest/0.IsColumnEmpty (0 ms) [ RUN ] MatrixTest/0.SSE [ OK ] MatrixTest/0.SSE (0 ms) [ RUN ] MatrixTest/0.ToHostArray [ OK ] MatrixTest/0.ToHostArray (0 ms) [ RUN ] MatrixTest/0.NonSequentialAccess [ OK ] MatrixTest/0.NonSequentialAccess (0 ms) [ RUN ] MatrixTest/0.Holes [ OK ] MatrixTest/0.Holes (0 ms) [ RUN ] MatrixTest/0.BigBandedMatrix N13ConsensusCore11DenseMatrixE : 1000000 [ OK ] MatrixTest/0.BigBandedMatrix (3 ms) [ RUN ] MatrixTest/0.BigIrregularBandedMatrix [ OK ] MatrixTest/0.BigIrregularBandedMatrix (0 ms) [ RUN ] MatrixTest/0.CopyTest [ OK ] MatrixTest/0.CopyTest (0 ms) [----------] 11 tests from MatrixTest/0 (4 ms total) [----------] 11 tests from MatrixTest/1, where TypeParam = ConsensusCore::SparseMatrix [ RUN ] MatrixTest/1.Basic [ OK ] MatrixTest/1.Basic (0 ms) [ RUN ] MatrixTest/1.Nullability [ OK ] MatrixTest/1.Nullability (0 ms) [ RUN ] MatrixTest/1.Ranges [ OK ] MatrixTest/1.Ranges (0 ms) [ RUN ] MatrixTest/1.IsColumnEmpty [ OK ] MatrixTest/1.IsColumnEmpty (0 ms) [ RUN ] MatrixTest/1.SSE [ OK ] MatrixTest/1.SSE (0 ms) [ RUN ] MatrixTest/1.ToHostArray [ OK ] MatrixTest/1.ToHostArray (0 ms) [ RUN ] MatrixTest/1.NonSequentialAccess [ OK ] MatrixTest/1.NonSequentialAccess (0 ms) [ RUN ] MatrixTest/1.Holes [ OK ] MatrixTest/1.Holes (0 ms) [ RUN ] MatrixTest/1.BigBandedMatrix N13ConsensusCore12SparseMatrixE : 1001976 [ OK ] MatrixTest/1.BigBandedMatrix (17 ms) [ RUN ] MatrixTest/1.BigIrregularBandedMatrix [ OK ] MatrixTest/1.BigIrregularBandedMatrix (0 ms) [ RUN ] MatrixTest/1.CopyTest [ OK ] MatrixTest/1.CopyTest (0 ms) [----------] 11 tests from MatrixTest/1 (17 ms total) [----------] 4 tests from PoaGraph [ RUN ] PoaGraph.SmallBasicTest [ OK ] PoaGraph.SmallBasicTest (0 ms) [ RUN ] PoaGraph.SmallExtraTests [ OK ] PoaGraph.SmallExtraTests (1 ms) [ RUN ] PoaGraph.SmallMismatchTests [ OK ] PoaGraph.SmallMismatchTests (0 ms) [ RUN ] PoaGraph.SmallDeletionTests [ OK ] PoaGraph.SmallDeletionTests (1 ms) [----------] 4 tests from PoaGraph (2 ms total) [----------] 8 tests from PoaConsensus [ RUN ] PoaConsensus.TestSimple [ OK ] PoaConsensus.TestSimple (1 ms) [ RUN ] PoaConsensus.TestOverhangSecond [ OK ] PoaConsensus.TestOverhangSecond (0 ms) [ RUN ] PoaConsensus.SmallSemiglobalTest [ OK ] PoaConsensus.SmallSemiglobalTest (0 ms) [ RUN ] PoaConsensus.SmallTilingTest [ OK ] PoaConsensus.SmallTilingTest (0 ms) [ RUN ] PoaConsensus.TestVerboseGraphVizOutput [ OK ] PoaConsensus.TestVerboseGraphVizOutput (1 ms) [ RUN ] PoaConsensus.TestLocalStaggered dot -Tpng local-staggered.dot > local-staggered.png sh: 1: dot: not found [ OK ] PoaConsensus.TestLocalStaggered (7 ms) [ RUN ] PoaConsensus.TestLongInsert [ OK ] PoaConsensus.TestLongInsert (1 ms) [ RUN ] PoaConsensus.NondeterminismRegressionTest [ OK ] PoaConsensus.NondeterminismRegressionTest (500 ms) [----------] 8 tests from PoaConsensus (510 ms total) [----------] 4 tests from MutationEnumerationTest [ RUN ] MutationEnumerationTest.TestAllMutations [ OK ] MutationEnumerationTest.TestAllMutations (0 ms) [ RUN ] MutationEnumerationTest.TestUniqueMutations [ OK ] MutationEnumerationTest.TestUniqueMutations (0 ms) [ RUN ] MutationEnumerationTest.TestUniqueNearbyMutations [ OK ] MutationEnumerationTest.TestUniqueNearbyMutations (0 ms) [ RUN ] MutationEnumerationTest.TestDinucleotideMutations [ OK ] MutationEnumerationTest.TestDinucleotideMutations (0 ms) [----------] 4 tests from MutationEnumerationTest (1 ms total) [----------] 3 tests from PairwiseAlignmentTests [ RUN ] PairwiseAlignmentTests.RepresentationTests [ OK ] PairwiseAlignmentTests.RepresentationTests (0 ms) [ RUN ] PairwiseAlignmentTests.GlobalAlignmentTests [ OK ] PairwiseAlignmentTests.GlobalAlignmentTests (0 ms) [ RUN ] PairwiseAlignmentTests.TargetPositionsInQueryTest [ OK ] PairwiseAlignmentTests.TargetPositionsInQueryTest (0 ms) [----------] 3 tests from PairwiseAlignmentTests (0 ms total) [----------] 2 tests from AffineAlignmentTests [ RUN ] AffineAlignmentTests.BasicTests [ OK ] AffineAlignmentTests.BasicTests (0 ms) [ RUN ] AffineAlignmentTests.LargeGapTest [ OK ] AffineAlignmentTests.LargeGapTest (7 ms) [----------] 2 tests from AffineAlignmentTests (7 ms total) [----------] 1 test from IupacAlignmentTests [ RUN ] IupacAlignmentTests.BasicTest [ OK ] IupacAlignmentTests.BasicTest (0 ms) [----------] 1 test from IupacAlignmentTests (0 ms total) [----------] 1 test from LinearAlignmentTests [ RUN ] LinearAlignmentTests.BasicTest [ OK ] LinearAlignmentTests.BasicTest (0 ms) [----------] 1 test from LinearAlignmentTests (0 ms total) [----------] 1 test from QuiverConfigTableTests [ RUN ] QuiverConfigTableTests.IllegalChemistry [ OK ] QuiverConfigTableTests.IllegalChemistry (0 ms) [----------] 1 test from QuiverConfigTableTests (0 ms total) [----------] 3 tests from MutationOrientationTests [ RUN ] MutationOrientationTests.ReadScoresMutation1 [ OK ] MutationOrientationTests.ReadScoresMutation1 (0 ms) [ RUN ] MutationOrientationTests.ReadScoresMutation2 [ OK ] MutationOrientationTests.ReadScoresMutation2 (0 ms) [ RUN ] MutationOrientationTests.OrientedMutation [ OK ] MutationOrientationTests.OrientedMutation (0 ms) [----------] 3 tests from MutationOrientationTests (0 ms total) [----------] 11 tests from MultiReadMutationScorerTest/0, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MultiReadMutationScorerTest/0.Template [ OK ] MultiReadMutationScorerTest/0.Template (0 ms) [ RUN ] MultiReadMutationScorerTest/0.BasicTest [ OK ] MultiReadMutationScorerTest/0.BasicTest (1 ms) [ RUN ] MultiReadMutationScorerTest/0.ManyMutationTest [ OK ] MultiReadMutationScorerTest/0.ManyMutationTest (1 ms) [ RUN ] MultiReadMutationScorerTest/0.CopyConstructorTest [ OK ] MultiReadMutationScorerTest/0.CopyConstructorTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.ReverseStrandTest [ OK ] MultiReadMutationScorerTest/0.ReverseStrandTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.TestMutationsAtBeginning [ OK ] MultiReadMutationScorerTest/0.TestMutationsAtBeginning (0 ms) [ RUN ] MultiReadMutationScorerTest/0.TestMutationsAtEnd [ OK ] MultiReadMutationScorerTest/0.TestMutationsAtEnd (0 ms) [ RUN ] MultiReadMutationScorerTest/0.NonSpanningReadsTest1 [ OK ] MultiReadMutationScorerTest/0.NonSpanningReadsTest1 (0 ms) [ RUN ] MultiReadMutationScorerTest/0.CopyTest [ OK ] MultiReadMutationScorerTest/0.CopyTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.MultiBaseSubstitutionsAtBounds [ OK ] MultiReadMutationScorerTest/0.MultiBaseSubstitutionsAtBounds (1 ms) [ RUN ] MultiReadMutationScorerTest/0.MultiBaseIndelsAtBounds [ OK ] MultiReadMutationScorerTest/0.MultiBaseIndelsAtBounds (0 ms) [----------] 11 tests from MultiReadMutationScorerTest/0 (3 ms total) [----------] 7 tests from RecursorTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorTest/0.SmallMatchTest [ OK ] RecursorTest/0.SmallMatchTest (0 ms) [ RUN ] RecursorTest/0.SmallMismatchTest [ OK ] RecursorTest/0.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/0.SmallMergeTest [ OK ] RecursorTest/0.SmallMergeTest (0 ms) [ RUN ] RecursorTest/0.MediumSizedTest [ OK ] RecursorTest/0.MediumSizedTest (0 ms) [ RUN ] RecursorTest/0.LinkTest [ OK ] RecursorTest/0.LinkTest (0 ms) [ RUN ] RecursorTest/0.ExtendAlphaTest [ OK ] RecursorTest/0.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/0.ExtendBetaTest [ OK ] RecursorTest/0.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/0 (0 ms total) [----------] 7 tests from RecursorTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorTest/1.SmallMatchTest [ OK ] RecursorTest/1.SmallMatchTest (0 ms) [ RUN ] RecursorTest/1.SmallMismatchTest [ OK ] RecursorTest/1.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/1.SmallMergeTest [ OK ] RecursorTest/1.SmallMergeTest (0 ms) [ RUN ] RecursorTest/1.MediumSizedTest [ OK ] RecursorTest/1.MediumSizedTest (1 ms) [ RUN ] RecursorTest/1.LinkTest [ OK ] RecursorTest/1.LinkTest (0 ms) [ RUN ] RecursorTest/1.ExtendAlphaTest [ OK ] RecursorTest/1.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/1.ExtendBetaTest [ OK ] RecursorTest/1.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/1 (1 ms total) [----------] 7 tests from RecursorTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorTest/2.SmallMatchTest [ OK ] RecursorTest/2.SmallMatchTest (0 ms) [ RUN ] RecursorTest/2.SmallMismatchTest [ OK ] RecursorTest/2.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/2.SmallMergeTest [ OK ] RecursorTest/2.SmallMergeTest (0 ms) [ RUN ] RecursorTest/2.MediumSizedTest [ OK ] RecursorTest/2.MediumSizedTest (2 ms) [ RUN ] RecursorTest/2.LinkTest [ OK ] RecursorTest/2.LinkTest (0 ms) [ RUN ] RecursorTest/2.ExtendAlphaTest [ OK ] RecursorTest/2.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/2.ExtendBetaTest [ OK ] RecursorTest/2.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/2 (2 ms total) [----------] 7 tests from RecursorTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorTest/3.SmallMatchTest [ OK ] RecursorTest/3.SmallMatchTest (0 ms) [ RUN ] RecursorTest/3.SmallMismatchTest [ OK ] RecursorTest/3.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/3.SmallMergeTest [ OK ] RecursorTest/3.SmallMergeTest (0 ms) [ RUN ] RecursorTest/3.MediumSizedTest [ OK ] RecursorTest/3.MediumSizedTest (1 ms) [ RUN ] RecursorTest/3.LinkTest [ OK ] RecursorTest/3.LinkTest (0 ms) [ RUN ] RecursorTest/3.ExtendAlphaTest [ OK ] RecursorTest/3.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/3.ExtendBetaTest [ OK ] RecursorTest/3.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/3 (1 ms total) [----------] 5 tests from RecursorFuzzTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorFuzzTest/0.AlphaBetaConcordance [ OK ] RecursorFuzzTest/0.AlphaBetaConcordance (10 ms) [ RUN ] RecursorFuzzTest/0.Alignment [ OK ] RecursorFuzzTest/0.Alignment (10 ms) [ RUN ] RecursorFuzzTest/0.LinkAlphaBeta [ OK ] RecursorFuzzTest/0.LinkAlphaBeta (11 ms) [ RUN ] RecursorFuzzTest/0.ExtendAlpha [ OK ] RecursorFuzzTest/0.ExtendAlpha (11 ms) [ RUN ] RecursorFuzzTest/0.ExtendBeta [ OK ] RecursorFuzzTest/0.ExtendBeta (12 ms) [----------] 5 tests from RecursorFuzzTest/0 (54 ms total) [----------] 5 tests from RecursorFuzzTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorFuzzTest/1.AlphaBetaConcordance [ OK ] RecursorFuzzTest/1.AlphaBetaConcordance (24 ms) [ RUN ] RecursorFuzzTest/1.Alignment [ OK ] RecursorFuzzTest/1.Alignment (25 ms) [ RUN ] RecursorFuzzTest/1.LinkAlphaBeta [ OK ] RecursorFuzzTest/1.LinkAlphaBeta (24 ms) [ RUN ] RecursorFuzzTest/1.ExtendAlpha [ OK ] RecursorFuzzTest/1.ExtendAlpha (12 ms) [ RUN ] RecursorFuzzTest/1.ExtendBeta [ OK ] RecursorFuzzTest/1.ExtendBeta (11 ms) [----------] 5 tests from RecursorFuzzTest/1 (96 ms total) [----------] 5 tests from RecursorFuzzTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorFuzzTest/2.AlphaBetaConcordance [ OK ] RecursorFuzzTest/2.AlphaBetaConcordance (32 ms) [ RUN ] RecursorFuzzTest/2.Alignment [ OK ] RecursorFuzzTest/2.Alignment (32 ms) [ RUN ] RecursorFuzzTest/2.LinkAlphaBeta [ OK ] RecursorFuzzTest/2.LinkAlphaBeta (37 ms) [ RUN ] RecursorFuzzTest/2.ExtendAlpha [ OK ] RecursorFuzzTest/2.ExtendAlpha (11 ms) [ RUN ] RecursorFuzzTest/2.ExtendBeta [ OK ] RecursorFuzzTest/2.ExtendBeta (11 ms) [----------] 5 tests from RecursorFuzzTest/2 (123 ms total) [----------] 5 tests from RecursorFuzzTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorFuzzTest/3.AlphaBetaConcordance [ OK ] RecursorFuzzTest/3.AlphaBetaConcordance (28 ms) [ RUN ] RecursorFuzzTest/3.Alignment [ OK ] RecursorFuzzTest/3.Alignment (29 ms) [ RUN ] RecursorFuzzTest/3.LinkAlphaBeta [ OK ] RecursorFuzzTest/3.LinkAlphaBeta (30 ms) [ RUN ] RecursorFuzzTest/3.ExtendAlpha [ OK ] RecursorFuzzTest/3.ExtendAlpha (10 ms) [ RUN ] RecursorFuzzTest/3.ExtendBeta [ OK ] RecursorFuzzTest/3.ExtendBeta (11 ms) [----------] 5 tests from RecursorFuzzTest/3 (108 ms total) [----------] 8 tests from MutationScorerTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] MutationScorerTest/0.BasicTest [ OK ] MutationScorerTest/0.BasicTest (0 ms) [ RUN ] MutationScorerTest/0.CopyTest [ OK ] MutationScorerTest/0.CopyTest (0 ms) [ RUN ] MutationScorerTest/0.MutationsAtBeginning [ OK ] MutationScorerTest/0.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/0.MutationsAtEnd [ OK ] MutationScorerTest/0.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/0.TinyTemplate [ OK ] MutationScorerTest/0.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/0.TemplateMutationWorkflow [ OK ] MutationScorerTest/0.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/0.DinucleotideInsertionTest [ OK ] MutationScorerTest/0.DinucleotideInsertionTest (1 ms) [ RUN ] MutationScorerTest/0.DinucleotideDeletionTest [ OK ] MutationScorerTest/0.DinucleotideDeletionTest (0 ms) [----------] 8 tests from MutationScorerTest/0 (1 ms total) [----------] 8 tests from MutationScorerTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MutationScorerTest/1.BasicTest [ OK ] MutationScorerTest/1.BasicTest (1 ms) [ RUN ] MutationScorerTest/1.CopyTest [ OK ] MutationScorerTest/1.CopyTest (0 ms) [ RUN ] MutationScorerTest/1.MutationsAtBeginning [ OK ] MutationScorerTest/1.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/1.MutationsAtEnd [ OK ] MutationScorerTest/1.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/1.TinyTemplate [ OK ] MutationScorerTest/1.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/1.TemplateMutationWorkflow [ OK ] MutationScorerTest/1.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/1.DinucleotideInsertionTest [ OK ] MutationScorerTest/1.DinucleotideInsertionTest (0 ms) [ RUN ] MutationScorerTest/1.DinucleotideDeletionTest [ OK ] MutationScorerTest/1.DinucleotideDeletionTest (1 ms) [----------] 8 tests from MutationScorerTest/1 (2 ms total) [----------] 8 tests from MutationScorerTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] MutationScorerTest/2.BasicTest [ OK ] MutationScorerTest/2.BasicTest (0 ms) [ RUN ] MutationScorerTest/2.CopyTest [ OK ] MutationScorerTest/2.CopyTest (0 ms) [ RUN ] MutationScorerTest/2.MutationsAtBeginning [ OK ] MutationScorerTest/2.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/2.MutationsAtEnd [ OK ] MutationScorerTest/2.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/2.TinyTemplate [ OK ] MutationScorerTest/2.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/2.TemplateMutationWorkflow [ OK ] MutationScorerTest/2.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/2.DinucleotideInsertionTest [ OK ] MutationScorerTest/2.DinucleotideInsertionTest (1 ms) [ RUN ] MutationScorerTest/2.DinucleotideDeletionTest [ OK ] MutationScorerTest/2.DinucleotideDeletionTest (0 ms) [----------] 8 tests from MutationScorerTest/2 (1 ms total) [----------] 8 tests from MutationScorerTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MutationScorerTest/3.BasicTest [ OK ] MutationScorerTest/3.BasicTest (0 ms) [ RUN ] MutationScorerTest/3.CopyTest [ OK ] MutationScorerTest/3.CopyTest (0 ms) [ RUN ] MutationScorerTest/3.MutationsAtBeginning [ OK ] MutationScorerTest/3.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/3.MutationsAtEnd [ OK ] MutationScorerTest/3.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/3.TinyTemplate [ OK ] MutationScorerTest/3.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/3.TemplateMutationWorkflow [ OK ] MutationScorerTest/3.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/3.DinucleotideInsertionTest [ OK ] MutationScorerTest/3.DinucleotideInsertionTest (1 ms) [ RUN ] MutationScorerTest/3.DinucleotideDeletionTest [ OK ] MutationScorerTest/3.DinucleotideDeletionTest (0 ms) [----------] 8 tests from MutationScorerTest/3 (1 ms total) [----------] 2 tests from SparseVectorTest [ RUN ] SparseVectorTest.BasicTest [ OK ] SparseVectorTest.BasicTest (0 ms) [ RUN ] SparseVectorTest.BasicTest2 [ OK ] SparseVectorTest.BasicTest2 (0 ms) [----------] 2 tests from SparseVectorTest (0 ms total) [----------] 1 test from SparseVector [ RUN ] SparseVector.CopyTest [ OK ] SparseVector.CopyTest (0 ms) [----------] 1 test from SparseVector (0 ms total) [----------] 7 tests from MutationTest [ RUN ] MutationTest.BasicTest [ OK ] MutationTest.BasicTest (0 ms) [ RUN ] MutationTest.DeleteTest [ OK ] MutationTest.DeleteTest (0 ms) [ RUN ] MutationTest.InsertTest [ OK ] MutationTest.InsertTest (0 ms) [ RUN ] MutationTest.ApplyMutationsTest [ OK ] MutationTest.ApplyMutationsTest (0 ms) [ RUN ] MutationTest.ApplyMutationsToSamePositionTest [ OK ] MutationTest.ApplyMutationsToSamePositionTest (0 ms) [ RUN ] MutationTest.MutationsToTranscript [ OK ] MutationTest.MutationsToTranscript (0 ms) [ RUN ] MutationTest.MutatedTemplatePositionsTest [ OK ] MutationTest.MutatedTemplatePositionsTest (0 ms) [----------] 7 tests from MutationTest (0 ms total) [----------] 5 tests from QvEvaluatorTest [ RUN ] QvEvaluatorTest.IncVsInc4 [ OK ] QvEvaluatorTest.IncVsInc4 (32 ms) [ RUN ] QvEvaluatorTest.DelVsDel4 [ OK ] QvEvaluatorTest.DelVsDel4 (33 ms) [ RUN ] QvEvaluatorTest.ExtraVsExtra4 [ OK ] QvEvaluatorTest.ExtraVsExtra4 (39 ms) [ RUN ] QvEvaluatorTest.MergeVsMerge4 [ OK ] QvEvaluatorTest.MergeVsMerge4 (25 ms) [ RUN ] QvEvaluatorTest.BadTagTest [ OK ] QvEvaluatorTest.BadTagTest (2 ms) [----------] 5 tests from QvEvaluatorTest (131 ms total) [----------] Global test environment tear-down [==========] 158 tests from 29 test cases ran. (1067 ms total) [ PASSED ] 158 tests. make[3]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' /usr/bin/make test-python make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[3]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.3.0 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.13 -I /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so 1.0.2 Python3 build is OK! make[3]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig/4.3.0 PYTHON_INCLUDE = /usr/include/python3.13 NUMPY_INCLUDE = /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Cpp.mk -j8 make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a' is up to date. make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Python.mk make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.3.0 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.13 -I /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib running build_py copying build/Python/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.13_pbconsensuscore/build copying build/Python/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.13_pbconsensuscore/build copying build/Python/_ConsensusCore.so -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.13_pbconsensuscore/build creating /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.13/dist-packages copying /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.13_pbconsensuscore/build/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.13/dist-packages copying /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.13_pbconsensuscore/build/_ConsensusCore.so -> /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.13/dist-packages byte-compiling /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.13/dist-packages/ConsensusCore.py to ConsensusCore.cpython-313.pyc running install_egg_info running egg_info creating build/Python/ConsensusCore.egg-info writing build/Python/ConsensusCore.egg-info/PKG-INFO writing dependency_links to build/Python/ConsensusCore.egg-info/dependency_links.txt writing top-level names to build/Python/ConsensusCore.egg-info/top_level.txt writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' reading manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' adding license file 'LICENSES' writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' Copying build/Python/ConsensusCore.egg-info to /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.13/dist-packages/ConsensusCore-1.0.2.egg-info Skipping SOURCES.txt running install_scripts dh_install -a -O--buildsystem=pybuild debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' find debian -name meson.build -delete make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild I: dh_python3 fs:421: renaming _ConsensusCore.so to _ConsensusCore.cpython-313-aarch64-linux-gnu.so debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_numpy3 Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. dh_numpy3: warning: skipping binary package libconsensuscore-dev which does not depend on the NumPy C ABI make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package libconsensuscore-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'libconsensuscore-dev' in '../libconsensuscore-dev_1.1.1+dfsg-8_arm64.deb'. dpkg-deb: building package 'python3-pbconsensuscore' in '../python3-pbconsensuscore_1.1.1+dfsg-8_arm64.deb'. dpkg-deb: building package 'python3-pbconsensuscore-dbgsym' in '../python3-pbconsensuscore-dbgsym_1.1.1+dfsg-8_arm64.deb'. dpkg-genbuildinfo --build=any -O../consensuscore_1.1.1+dfsg-8_arm64.buildinfo dpkg-genchanges --build=any -O../consensuscore_1.1.1+dfsg-8_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-09-19T04:04:37Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Fri, 19 Sep 2025 04:04:38 +0000 | +------------------------------------------------------------------------------+ consensuscore_1.1.1+dfsg-8_arm64.changes: ----------------------------------------- Format: 1.8 Date: Mon, 21 Apr 2025 13:40:07 +0200 Source: consensuscore Binary: libconsensuscore-dev python3-pbconsensuscore python3-pbconsensuscore-dbgsym Architecture: arm64 Version: 1.1.1+dfsg-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: libconsensuscore-dev - algorithms for PacBio multiple sequence consensus -- development python3-pbconsensuscore - algorithms for PacBio multiple sequence consensus -- Python 3 Changes: consensuscore (1.1.1+dfsg-8) unstable; urgency=medium . * Team upload. * Re-enable Python test after py2 -> py3 transition * Clean better * Fix dh_numpy invocation Checksums-Sha1: d6e9c1ebecfb7fa2fda94ccb29d70dd32717fa51 6835 consensuscore_1.1.1+dfsg-8_arm64.buildinfo d15f1657192aa0b811277234d0e766a4ff002e49 473436 libconsensuscore-dev_1.1.1+dfsg-8_arm64.deb 2353e2659345cc5751f8256cc072b5fcbdf108dc 9104112 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-8_arm64.deb d09d0b063ce88dadf97e65212ac46bd9bc6d5528 646424 python3-pbconsensuscore_1.1.1+dfsg-8_arm64.deb Checksums-Sha256: 6b76add3dfe69e40aeca9748e22363516ccad2b4978ff7e1437cd11dc9a6adde 6835 consensuscore_1.1.1+dfsg-8_arm64.buildinfo dccc6efbac89db592d5e3e4958c5af0816523ddc033714b691ba7e9a93f726f5 473436 libconsensuscore-dev_1.1.1+dfsg-8_arm64.deb bf33edfa9225704a30061d468f5ef03920f357cf5b6bb69519e3e98223f0fa5d 9104112 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-8_arm64.deb e104b6286f925ed914a7ae0f8b75c9dcd815b7390b464de673ef2bf87e74c0ae 646424 python3-pbconsensuscore_1.1.1+dfsg-8_arm64.deb Files: c4773fcbb1c0be7d7e0daa8d81bfe4ce 6835 science optional consensuscore_1.1.1+dfsg-8_arm64.buildinfo 18d1ae827547844083aa85ce2e61adf3 473436 libdevel optional libconsensuscore-dev_1.1.1+dfsg-8_arm64.deb 86684cf3db8d2630f91d4a3f3d0f1661 9104112 debug optional python3-pbconsensuscore-dbgsym_1.1.1+dfsg-8_arm64.deb e476cc2ca156f1aed95791cdaa695f3e 646424 python optional python3-pbconsensuscore_1.1.1+dfsg-8_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo Fri, 19 Sep 2025 04:04:39 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: consensuscore Binary: libconsensuscore-dev python3-pbconsensuscore python3-pbconsensuscore-dbgsym Architecture: arm64 Version: 1.1.1+dfsg-8 Checksums-Md5: 18d1ae827547844083aa85ce2e61adf3 473436 libconsensuscore-dev_1.1.1+dfsg-8_arm64.deb 86684cf3db8d2630f91d4a3f3d0f1661 9104112 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-8_arm64.deb e476cc2ca156f1aed95791cdaa695f3e 646424 python3-pbconsensuscore_1.1.1+dfsg-8_arm64.deb Checksums-Sha1: d15f1657192aa0b811277234d0e766a4ff002e49 473436 libconsensuscore-dev_1.1.1+dfsg-8_arm64.deb 2353e2659345cc5751f8256cc072b5fcbdf108dc 9104112 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-8_arm64.deb d09d0b063ce88dadf97e65212ac46bd9bc6d5528 646424 python3-pbconsensuscore_1.1.1+dfsg-8_arm64.deb Checksums-Sha256: dccc6efbac89db592d5e3e4958c5af0816523ddc033714b691ba7e9a93f726f5 473436 libconsensuscore-dev_1.1.1+dfsg-8_arm64.deb bf33edfa9225704a30061d468f5ef03920f357cf5b6bb69519e3e98223f0fa5d 9104112 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-8_arm64.deb e104b6286f925ed914a7ae0f8b75c9dcd815b7390b464de673ef2bf87e74c0ae 646424 python3-pbconsensuscore_1.1.1+dfsg-8_arm64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Fri, 19 Sep 2025 04:04:36 +0000 Build-Path: /build/reproducible-path/consensuscore-1.1.1+dfsg Installed-Build-Depends: architecture-properties (= 0.2.6), autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-1), autotools-dev (= 20240727.1), base-files (= 13.7), base-passwd (= 3.6.7), bash (= 5.2.37-2), binutils (= 2.44-3), binutils-aarch64-linux-gnu (= 2.44-3), binutils-common (= 2.44-3), bsdextrautils (= 2.41-4), bsdutils (= 1:2.41-4), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-2), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-19), cpp-14-aarch64-linux-gnu (= 14.2.0-19), cpp-aarch64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.2), debianutils (= 5.22), dh-autoreconf (= 20), dh-exec (= 0.30+b1), dh-python (= 6.20250414), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.18), dpkg-dev (= 1.22.18), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-aarch64-linux-gnu (= 14.2.0-19), g++-aarch64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-19), gcc-14-aarch64-linux-gnu (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-aarch64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-1), gettext-base (= 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zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1745235607" +------------------------------------------------------------------------------+ | Package contents Fri, 19 Sep 2025 04:04:39 +0000 | +------------------------------------------------------------------------------+ libconsensuscore-dev_1.1.1+dfsg-8_arm64.deb ------------------------------------------- new Debian package, version 2.0. size 473436 bytes: control archive=2176 bytes. 734 bytes, 17 lines control 4322 bytes, 53 lines md5sums Package: libconsensuscore-dev Source: consensuscore Version: 1.1.1+dfsg-8 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 3577 Section: libdevel Priority: optional Homepage: https://github.com/PacificBiosciences/ConsensusCore Description: algorithms for PacBio multiple sequence consensus -- development files ConsensusCore is a library of C++ algorithms for Pacific Biosciences multiple sequence consensus that powers Quiver (Python) and ConsensusTools (.NET). This library primarily exists as the backend for GenomicConsensus, which implements Quiver. . This package is part of the SMRT Analysis suite. It provides the header files and static library. drwxr-xr-x root/root 0 2025-04-21 11:40 ./ drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/ drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/include/ drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/include/ConsensusCore/ drwxr-xr-x root/root 0 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/ -rw-r--r-- root/root 1214 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/AffineAlignment.hpp -rw-r--r-- root/root 775 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/AlignConfig.hpp -rw-r--r-- root/root 565 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/LinearAlignment.hpp -rw-r--r-- root/root 1956 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/PairwiseAlignment.hpp -rw-r--r-- root/root 196 2018-08-14 14:23 ./usr/include/ConsensusCore/Checksum.hpp -rw-r--r-- root/root 653 2018-08-14 14:23 ./usr/include/ConsensusCore/Coverage.hpp drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/include/ConsensusCore/Edna/ -rw-r--r-- root/root 792 2018-08-14 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./usr/include/ConsensusCore/Poa/RangeFinder.hpp drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/include/ConsensusCore/Quiver/ -rw-r--r-- root/root 531 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/Diploid.hpp -rw-r--r-- root/root 7338 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/MultiReadMutationScorer.hpp -rw-r--r-- root/root 1178 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/MutationEnumerator-inl.hpp -rw-r--r-- root/root 1776 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/MutationEnumerator.hpp -rw-r--r-- root/root 1924 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/MutationScorer.hpp -rw-r--r-- root/root 5260 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/QuiverConfig.hpp -rw-r--r-- root/root 933 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/QuiverConsensus.hpp -rw-r--r-- root/root 6723 2025-04-21 11:40 ./usr/include/ConsensusCore/Quiver/QvEvaluator.hpp -rw-r--r-- root/root 773 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/ReadScorer.hpp 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2025-04-21 11:18 ./usr/share/doc/libconsensuscore-dev/copyright python3-pbconsensuscore-dbgsym_1.1.1+dfsg-8_arm64.deb ----------------------------------------------------- new Debian package, version 2.0. size 9104112 bytes: control archive=556 bytes. 435 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: python3-pbconsensuscore-dbgsym Source: consensuscore Version: 1.1.1+dfsg-8 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 9337 Depends: python3-pbconsensuscore (= 1.1.1+dfsg-8) Section: debug Priority: optional Description: debug symbols for python3-pbconsensuscore Build-Ids: b4b288a034b5da04a50ea6bcb96b70e3e378e0fa drwxr-xr-x root/root 0 2025-04-21 11:40 ./ drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/ drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/lib/ drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-04-21 11:40 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Section: python Priority: optional Homepage: https://github.com/PacificBiosciences/ConsensusCore Description: algorithms for PacBio multiple sequence consensus -- Python 3 ConsensusCore is a library of C++ algorithms for Pacific Biosciences multiple sequence consensus that powers Quiver (Python) and ConsensusTools (.NET). This library primarily exists as the backend for GenomicConsensus, which implements Quiver. . This package is part of the SMRT Analysis suite. It provides the Python3 bindings. drwxr-xr-x root/root 0 2025-04-21 11:40 ./ drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/ drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/lib/ drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/lib/python3/ drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/ -rw-r--r-- root/root 2354 2025-04-21 11:40 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/PKG-INFO -rw-r--r-- root/root 1 2025-04-21 11:40 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/dependency_links.txt -rw-r--r-- root/root 15 2025-04-21 11:40 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/top_level.txt -rw-r--r-- root/root 432 2025-04-21 11:40 ./usr/lib/python3/dist-packages/ConsensusCore.py -rw-r--r-- root/root 3207752 2025-04-21 11:40 ./usr/lib/python3/dist-packages/_ConsensusCore.cpython-313-aarch64-linux-gnu.so drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/share/ drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-04-21 11:40 ./usr/share/doc/python3-pbconsensuscore/ -rw-r--r-- root/root 1049 2025-04-21 11:40 ./usr/share/doc/python3-pbconsensuscore/changelog.Debian.gz -rw-r--r-- root/root 420 2018-08-14 14:23 ./usr/share/doc/python3-pbconsensuscore/changelog.gz -rw-r--r-- root/root 5866 2025-04-21 11:18 ./usr/share/doc/python3-pbconsensuscore/copyright +------------------------------------------------------------------------------+ | Post Build Fri, 19 Sep 2025 04:04:42 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Fri, 19 Sep 2025 04:04:42 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Fri, 19 Sep 2025 04:04:44 +0000 | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 234068 Build-Time: 272 Distribution: unstable Host Architecture: arm64 Install-Time: 6 Job: /srv/rebuilderd/tmp/rebuilderd2cs9Ag/inputs/consensuscore_1.1.1+dfsg-8.dsc Machine Architecture: arm64 Package: consensuscore Package-Time: 290 Source-Version: 1.1.1+dfsg-8 Space: 234068 Status: successful Version: 1.1.1+dfsg-8 -------------------------------------------------------------------------------- Finished at 2025-09-19T04:04:37Z Build needed 00:04:50, 234068k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderd2cs9Ag/out checking libconsensuscore-dev_1.1.1+dfsg-8_arm64.deb: size differs for libconsensuscore-dev_1.1.1+dfsg-8_arm64.deb