=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdO8mXN6/inputs/mapsembler2_2.2.4+dfsg1-4+b1_arm64.buildinfo Source: mapsembler2 Version: 2.2.4+dfsg1-4 rebuilderd-worker node: codethink02-arm64 +------------------------------------------------------------------------------+ | Downloading sources Mon, 22 Sep 2025 06:08:02 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian sid InRelease [216 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [11.1 MB] Fetched 22.0 MB in 2s (10.4 MB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/mapsembler2/mapsembler2_2.2.4%2bdfsg1-4.dsc' mapsembler2_2.2.4+dfsg1-4.dsc 2265 SHA256:9c00683679e9b6fe8db1bac016ac724625b993b7fd1b5e130d00b06be82f4de5 'https://deb.debian.org/debian/pool/main/m/mapsembler2/mapsembler2_2.2.4%2bdfsg1.orig.tar.xz' mapsembler2_2.2.4+dfsg1.orig.tar.xz 1369588 SHA256:44b215f922ed34c3a167eb512012792e7d777df17d3dda6a2c4a5a0959e8b824 'https://deb.debian.org/debian/pool/main/m/mapsembler2/mapsembler2_2.2.4%2bdfsg1-4.debian.tar.xz' mapsembler2_2.2.4+dfsg1-4.debian.tar.xz 24464 SHA256:e24f25f87d54b83d0685c102f8f71d694771e696372484835fb827fdc6b21246 44b215f922ed34c3a167eb512012792e7d777df17d3dda6a2c4a5a0959e8b824 mapsembler2_2.2.4+dfsg1.orig.tar.xz e24f25f87d54b83d0685c102f8f71d694771e696372484835fb827fdc6b21246 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz 9c00683679e9b6fe8db1bac016ac724625b993b7fd1b5e130d00b06be82f4de5 mapsembler2_2.2.4+dfsg1-4.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Mon, 22 Sep 2025 06:08:05 +0000 | +------------------------------------------------------------------------------+ Rebuilding mapsembler2=2.2.4+dfsg1-4 in /srv/rebuilderd/tmp/rebuilderdO8mXN6/inputs now. +------------------------------------------------------------------------------+ | WARNING: calling debrebuild without --cache, hammering snapshot.d.o :( | +------------------------------------------------------------------------------+ + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdO8mXN6/out --builder=sbuild+unshare -- /srv/rebuilderd/tmp/rebuilderdO8mXN6/inputs/mapsembler2_2.2.4+dfsg1-4+b1_arm64.buildinfo /srv/rebuilderd/tmp/rebuilderdO8mXN6/inputs/mapsembler2_2.2.4+dfsg1-4+b1_arm64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/mapsembler2-2.2.4+dfsg1 I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid InRelease [202 kB] Get:2 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 Packages [9919 kB] Fetched 10.1 MB in 1s (8415 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20241027T215652Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Fetched 159 kB in 0s (1043 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjc7ih8oa/libreadline8t64_8.2-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libtasn1-6-dev arm64 4.19.0-3+b2 [96.2 kB] Fetched 96.2 kB in 0s (340 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuyum_qxd/libtasn1-6-dev_4.19.0-3+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Fetched 235 kB in 0s (9346 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpds2jh83o/libssh2-1t64_1.11.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libmount1 arm64 2.40.2-9 [190 kB] Fetched 190 kB in 0s (7271 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd6o6ddu/libmount1_2.40.2-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 cpp-14 arm64 14.2.0-7 [1280 B] Fetched 1280 B in 0s (52.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ot8poee/cpp-14_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libsmartcols1 arm64 2.40.2-9 [135 kB] Fetched 135 kB in 0s (5504 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp42rmmhs_/libsmartcols1_2.40.2-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 grep arm64 3.11-4 [423 kB] Fetched 423 kB in 0s (6710 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3wfx7eqe/grep_3.11-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 cmake-data all 3.30.5-1 [2223 kB] Fetched 2223 kB in 0s (35.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp41w4_s8x/cmake-data_3.30.5-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Fetched 3828 B in 0s (31.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4rvry50u/libboost-dev_1.83.0.2+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libbinutils arm64 2.43.1-5 [657 kB] Fetched 657 kB in 0s (20.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppwwsa6_m/libbinutils_2.43.1-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libudev1 arm64 256.7-2 [137 kB] Fetched 137 kB in 0s (5620 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg07p6j4z/libudev1_256.7-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [330 kB] Fetched 330 kB in 0s (2609 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi_qdy2cu/libzstd-dev_1.5.6+dfsg-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libgcc-s1 arm64 14.2.0-7 [54.0 kB] Fetched 54.0 kB in 0s (2404 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmvhvq0z_/libgcc-s1_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libgfortran5 arm64 14.2.0-7 [361 kB] Fetched 361 kB in 0s (3140 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprto2hrjv/libgfortran5_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 liblsan0 arm64 14.2.0-7 [1162 kB] Fetched 1162 kB in 0s (27.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl4b9i6hp/liblsan0_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-4 [21.4 kB] Fetched 21.4 kB in 0s (87.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn8q7qqqm/libhdf5-hl-cpp-100t64_1.10.10+repack-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 patch arm64 2.7.6-7 [121 kB] Fetched 121 kB in 0s (4837 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpshhkji_o/patch_2.7.6-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 mawk arm64 1.3.4.20240905-1 [131 kB] Fetched 131 kB in 0s (5373 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpowcxk6qe/mawk_1.3.4.20240905-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libctf0 arm64 2.43.1-5 [84.0 kB] Fetched 84.0 kB in 0s (3364 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzo0khuyq/libctf0_2.43.1-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libstdc++6 arm64 14.2.0-7 [637 kB] Fetched 637 kB in 0s (19.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpraoexy4e/libstdc++6_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 binutils arm64 2.43.1-5 [67.8 kB] Fetched 67.8 kB in 0s (2795 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5e6xwhj9/binutils_2.43.1-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B] Fetched 4832 B in 0s (202 kB/s) dpkg-name: info: moved 'cpp-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpatm2422j/cpp-aarch64-linux-gnu_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 procps arm64 2:4.0.4-6 [872 kB] Fetched 872 kB in 0s (20.8 MB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-6_arm64.deb' to '/srv/rebuilderd/tmp/tmpomc9gizl/procps_4.0.4-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B] Fetched 1200 B in 0s (51.4 kB/s) dpkg-name: info: moved 'g++-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpib1cyv_5/g++-aarch64-linux-gnu_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Fetched 96.6 kB in 0s (4059 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg3315brz/bsdextrautils_2.40.2-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB] Fetched 122 kB in 0s (4844 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.36-5_arm64.deb' to '/srv/rebuilderd/tmp/tmp3e5d03tm/libcrypt-dev_4.4.36-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b1 [329 kB] Fetched 329 kB in 0s (733 kB/s) dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-2+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmp5xmki6vc/libgmpxx4ldbl_6.3.0+dfsg-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 ncurses-base all 6.5-2 [270 kB] Fetched 270 kB in 0s (10.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcorx7jq6/ncurses-base_6.5-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libpam-modules arm64 1.5.3-7 [260 kB] Fetched 260 kB in 0s (9984 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4hq3dxme/libpam-modules_1.5.3-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Fetched 172 kB in 0s (1471 kB/s) dpkg-name: info: moved 'libjpeg62-turbo_1%3a2.1.5-3_arm64.deb' to '/srv/rebuilderd/tmp/tmp887q97e8/libjpeg62-turbo_2.1.5-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 perl arm64 5.40.0-6 [267 kB] Fetched 267 kB in 0s (9929 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6960i3oc/perl_5.40.0-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 sensible-utils all 0.0.24 [24.8 kB] Fetched 24.8 kB in 0s (1074 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsokaiv2n/sensible-utils_0.0.24_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 debianutils arm64 5.20 [89.5 kB] Fetched 89.5 kB in 0s (2562 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvcp984ut/debianutils_5.20_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libunistring5 arm64 1.2-1 [402 kB] Fetched 402 kB in 0s (14.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyds7t_nf/libunistring5_1.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B] Fetched 1332 B in 0s (55.7 kB/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpchbi8n5g/g++_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Fetched 126 kB in 0s (4863 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp70nfx9_/libgssapi-krb5-2_1.21.3-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libcppunit-dev arm64 1.15.1-4+b2 [202 kB] Fetched 202 kB in 0s (2559 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3igovm80/libcppunit-dev_1.15.1-4+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libcc1-0 arm64 14.2.0-7 [42.2 kB] Fetched 42.2 kB in 0s (1769 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpld3wyrov/libcc1-0_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libmd0 arm64 1.1.0-2 [32.7 kB] Fetched 32.7 kB in 0s (1345 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpan3np6x5/libmd0_1.1.0-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB] Fetched 50.9 kB in 0s (2172 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpky6e1go5/libc-dev-bin_2.40-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libpam0g arm64 1.5.3-7 [66.5 kB] Fetched 66.5 kB in 0s (2827 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpormigt64/libpam0g_1.5.3-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Fetched 1129 kB in 0s (27.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpza581eug/groff-base_1.23.0-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libjsoncpp26 arm64 1.9.6-2 [73.1 kB] Fetched 73.1 kB in 0s (3143 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnu84t1ib/libjsoncpp26_1.9.6-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libnettle8t64 arm64 3.10-1 [308 kB] Fetched 308 kB in 0s (11.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq2d4jcnv/libnettle8t64_3.10-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Fetched 916 kB in 0s (2488 kB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpf_ao6c6r/zlib1g-dev_1.3.dfsg+really1.3.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Fetched 630 kB in 0s (19.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbzsx9cjt/libxml2_2.12.7+dfsg+really2.9.14-0.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Fetched 129 kB in 0s (5036 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprpqs2xh6/librhash1_1.4.5-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 findutils arm64 4.10.0-3 [696 kB] Fetched 696 kB in 0s (21.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoxsd2rnz/findutils_4.10.0-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libgprofng0 arm64 2.43.1-5 [690 kB] Fetched 690 kB in 0s (14.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp306r0suz/libgprofng0_2.43.1-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 rpcsvc-proto arm64 1.4.3-1 [59.7 kB] Fetched 59.7 kB in 0s (2556 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfqxqax5a/rpcsvc-proto_1.4.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Fetched 20.0 kB in 0s (868 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd3768k0m/libsasl2-modules-db_2.1.28+dfsg1-8_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 man-db arm64 2.13.0-1 [1404 kB] Fetched 1404 kB in 0s (27.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzx7eb3pu/man-db_2.13.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-1 [84.0 kB] Fetched 84.0 kB in 0s (3513 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpqhsde04n/zlib1g_1.3.dfsg+really1.3.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 g++-14 arm64 14.2.0-7 [20.0 kB] Fetched 20.0 kB in 0s (851 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpopcltvxg/g++-14_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libtsan2 arm64 14.2.0-7 [2386 kB] Fetched 2386 kB in 0s (36.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi11u5f9h/libtsan2_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 xz-utils arm64 5.6.3-1 [540 kB] Fetched 540 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpttcka0kz/xz-utils_5.6.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libseccomp2 arm64 2.5.5-1+b1 [46.5 kB] Fetched 46.5 kB in 0s (2009 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpufpy_hqd/libseccomp2_2.5.5-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 autopoint all 0.22.5-2 [723 kB] Fetched 723 kB in 0s (20.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpupvr3v8s/autopoint_0.22.5-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libmpfr6 arm64 4.2.1-1+b1 [674 kB] Fetched 674 kB in 0s (19.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppstj18cg/libmpfr6_4.2.1-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (3470 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqjjrlam6/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 file arm64 1:5.45-3 [43.0 kB] Fetched 43.0 kB in 0s (1915 kB/s) dpkg-name: info: moved 'file_1%3a5.45-3_arm64.deb' to '/srv/rebuilderd/tmp/tmp0nkr12yv/file_5.45-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Fetched 80.8 kB in 0s (3356 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg_5u3zw3/libk5crypto3_1.21.3-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libunbound8 arm64 1.22.0-1 [553 kB] Fetched 553 kB in 0s (1172 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn1iisunf/libunbound8_1.22.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Fetched 32.1 kB in 0s (1375 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp15twcslz/libkrb5support0_1.21.3-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B] Fetched 1568 B in 0s (68.1 kB/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp088u64i3/cpp_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libp11-kit0 arm64 0.25.5-2 [406 kB] Fetched 406 kB in 0s (13.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ukevfhd/libp11-kit0_0.25.5-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libcppunit-1.15-0 arm64 1.15.1-4+b2 [141 kB] Fetched 141 kB in 0s (473 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_uzsb5qi/libcppunit-1.15-0_1.15.1-4+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Fetched 314 kB in 0s (11.2 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.45-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpnn3j2nzf/libmagic-mgc_5.45-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 dash arm64 0.5.12-9 [90.5 kB] Fetched 90.5 kB in 0s (3660 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi9eeapco/dash_0.5.12-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libperl5.40 arm64 5.40.0-6 [4149 kB] Fetched 4149 kB in 0s (21.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt4lyucpg/libperl5.40_5.40.0-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 perl-modules-5.40 all 5.40.0-6 [3022 kB] Fetched 3022 kB in 0s (32.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcqow26s5/perl-modules-5.40_5.40.0-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 binutils-aarch64-linux-gnu arm64 2.43.1-5 [2800 kB] Fetched 2800 kB in 0s (34.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy0tfuidu/binutils-aarch64-linux-gnu_2.43.1-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libpcre2-8-0 arm64 10.42-4+b1 [231 kB] Fetched 231 kB in 0s (9201 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg32vp6q/libpcre2-8-0_10.42-4+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libcap-ng0 arm64 0.8.5-3 [16.7 kB] Fetched 16.7 kB in 0s (742 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ntc9lmu/libcap-ng0_0.8.5-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-4 [118 kB] Fetched 118 kB in 0s (502 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgp_e9amv/libhdf5-cpp-103-1t64_1.10.10+repack-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libssl3t64 arm64 3.3.2-2 [2600 kB] Fetched 2600 kB in 0s (25.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv6ps76vb/libssl3t64_3.3.2-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (754 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5btjlhjp/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 dpkg arm64 1.22.11 [1514 kB] Fetched 1514 kB in 0s (27.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1mlu5xy5/dpkg_1.22.11_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB] Fetched 1591 kB in 0s (27.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprk0jc7h2/libc6-dev_2.40-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libpam-runtime all 1.5.3-7 [140 kB] Fetched 140 kB in 0s (5561 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8piviq7r/libpam-runtime_1.5.3-7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b4 [67.3 kB] Fetched 67.3 kB in 0s (261 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc0lv6h2a/librtmp-dev_2.4+20151223.gitfa8646d.1-2+b4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4 [60.9 kB] Fetched 60.9 kB in 0s (192 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwwd9855c/libhdf5-hl-100t64_1.10.10+repack-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libmpc3 arm64 1.3.1-1+b2 [50.2 kB] Fetched 50.2 kB in 0s (2053 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdt9ovpfa/libmpc3_1.3.1-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libblkid1 arm64 2.40.2-9 [162 kB] Fetched 162 kB in 0s (6527 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp39o4fiki/libblkid1_2.40.2-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 autoconf all 2.72-3 [493 kB] Fetched 493 kB in 0s (15.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpubkhz7c7/autoconf_2.72-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libhwasan0 arm64 14.2.0-7 [1442 kB] Fetched 1442 kB in 0s (27.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8xnkdqrd/libhwasan0_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libtasn1-6 arm64 4.19.0-3+b2 [46.4 kB] Fetched 46.4 kB in 0s (1822 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxsuwelch/libtasn1-6_4.19.0-3+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Fetched 69.0 kB in 0s (2681 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5htmm88h/libuchardet0_0.0.8-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Fetched 56.8 kB in 0s (2441 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp96soczh0/libpsl5t64_0.21.2-1.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libaudit-common all 1:4.0.1-1 [12.3 kB] Fetched 12.3 kB in 0s (514 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.1-1_all.deb' to '/srv/rebuilderd/tmp/tmps18udxip/libaudit-common_4.0.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libubsan1 arm64 14.2.0-7 [1040 kB] Fetched 1040 kB in 0s (10.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8vdpcdfb/libubsan1_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Fetched 9352 B in 0s (413 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsnstnz1r/libkeyutils1_1.6.3-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libselinux1 arm64 3.7-3 [71.9 kB] Fetched 71.9 kB in 0s (1191 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1t3r23l3/libselinux1_3.7-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3 [292 kB] Fetched 292 kB in 0s (719 kB/s) dpkg-name: info: moved 'libjpeg62-turbo-dev_1%3a2.1.5-3_arm64.deb' to '/srv/rebuilderd/tmp/tmp892w9quk/libjpeg62-turbo-dev_2.1.5-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libcurl4-openssl-dev arm64 8.10.1-2 [447 kB] Fetched 447 kB in 0s (1142 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp_6ojycg/libcurl4-openssl-dev_8.10.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libp11-kit-dev arm64 0.25.5-2 [208 kB] Fetched 208 kB in 0s (606 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe9j8e29v/libp11-kit-dev_0.25.5-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 gettext arm64 0.22.5-2 [1532 kB] Fetched 1532 kB in 0s (22.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8nspx_u5/gettext_0.22.5-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 coreutils arm64 9.5-1 [2858 kB] Fetched 2858 kB in 0s (36.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7fbsqto_/coreutils_9.5-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 liblz4-1 arm64 1.9.4-3 [55.0 kB] Fetched 55.0 kB in 0s (2196 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp38ekfmhu/liblz4-1_1.9.4-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 util-linux arm64 2.40.2-9 [1176 kB] Fetched 1176 kB in 0s (23.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdu2n4e3j/util-linux_2.40.2-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Fetched 8448 B in 0s (346 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyusisgo8/dh-strip-nondeterminism_1.14.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libsframe1 arm64 2.43.1-5 [76.5 kB] Fetched 76.5 kB in 0s (3307 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp86geffd_/libsframe1_2.43.1-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libgnutls28-dev arm64 3.8.6-2 [1394 kB] Fetched 1394 kB in 0s (3253 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9raqqdjb/libgnutls28-dev_3.8.6-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 gcc-14-base arm64 14.2.0-7 [46.9 kB] Fetched 46.9 kB in 0s (1861 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph246zmvn/gcc-14-base_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Fetched 189 kB in 0s (3324 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3n64l4qi/libelf1t64_0.192-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 binutils-common arm64 2.43.1-5 [2631 kB] Fetched 2631 kB in 0s (26.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9ec7qesn/binutils-common_2.43.1-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libc-bin arm64 2.40-3 [540 kB] Fetched 540 kB in 0s (16.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr1rt6i5o/libc-bin_2.40-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libjansson4 arm64 2.14-2+b2 [39.5 kB] Fetched 39.5 kB in 0s (1633 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0_0bmvze/libjansson4_2.14-2+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libgcc-14-dev arm64 14.2.0-7 [2365 kB] Fetched 2365 kB in 0s (32.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7o05uzd3/libgcc-14-dev_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-4 [39.0 kB] Fetched 39.0 kB in 0s (130 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8p6yycuk/libhdf5-hl-fortran-100t64_1.10.10+repack-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 liblzma5 arm64 5.6.3-1 [266 kB] Fetched 266 kB in 0s (9620 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeakp62vz/liblzma5_5.6.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (4189 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyj9slb0l/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 base-files arm64 13.5 [72.8 kB] Fetched 72.8 kB in 0s (2956 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4xhd9vyg/base-files_13.5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libjpeg-dev arm64 1:2.1.5-3 [71.9 kB] Fetched 71.9 kB in 0s (615 kB/s) dpkg-name: info: moved 'libjpeg-dev_1%3a2.1.5-3_arm64.deb' to '/srv/rebuilderd/tmp/tmprdn00_kf/libjpeg-dev_2.1.5-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 make arm64 4.3-4.1 [391 kB] Fetched 391 kB in 0s (13.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxwcov397/make_4.3-4.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4 [1050 kB] Fetched 1050 kB in 0s (2497 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz0dg0eiq/libhdf5-103-1t64_1.10.10+repack-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 linux-libc-dev all 6.11.4-1 [2440 kB] Fetched 2440 kB in 0s (35.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxwqni3ck/linux-libc-dev_6.11.4-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 openssl-provider-legacy arm64 3.3.2-2 [296 kB] Fetched 296 kB in 0s (11.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2to0ixza/openssl-provider-legacy_3.3.2-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7 [17.7 MB] Fetched 17.7 MB in 0s (50.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvtkb7yqa/gcc-14-aarch64-linux-gnu_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 sysvinit-utils arm64 3.11-1 [33.0 kB] Fetched 33.0 kB in 0s (1674 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9y395u2i/sysvinit-utils_3.11-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 hostname arm64 3.25 [10.8 kB] Fetched 10.8 kB in 0s (449 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzmb3_slv/hostname_3.25_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libasan8 arm64 14.2.0-7 [2578 kB] Fetched 2578 kB in 0s (32.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4y3h3vaf/libasan8_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b1 [619 kB] Fetched 619 kB in 0s (1517 kB/s) dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-2+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmp2o3dwa4k/libgmp-dev_6.3.0+dfsg-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libssl-dev arm64 3.3.2-2 [3185 kB] Fetched 3185 kB in 0s (9519 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk768avzg/libssl-dev_3.3.2-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libaudit1 arm64 1:4.0.1-1 [53.8 kB] Fetched 53.8 kB in 0s (2329 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.1-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpv4twmr9_/libaudit1_4.0.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libaec-dev arm64 1.1.3-1 [19.7 kB] Fetched 19.7 kB in 0s (155 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwqaxuagt/libaec-dev_1.1.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 sed arm64 4.9-2 [324 kB] Fetched 324 kB in 0s (11.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpndup0nh8/sed_4.9-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 autotools-dev all 20220109.1 [51.6 kB] Fetched 51.6 kB in 0s (2152 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjsne6cum/autotools-dev_20220109.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libisl23 arm64 0.27-1 [601 kB] Fetched 601 kB in 0s (20.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvp4_ez4a/libisl23_0.27-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Fetched 56.7 kB in 0s (2352 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8a10x69_/librtmp1_2.4+20151223.gitfa8646d.1-2+b4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Fetched 35.3 kB in 0s (302 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb5j93y2p/libpkgconf3_1.8.1-4_arm64.deb' Downloading dependency 1 of 221: libreadline8t64:arm64=8.2-5 Downloading dependency 2 of 221: libtasn1-6-dev:arm64=4.19.0-3+b2 Downloading dependency 3 of 221: libssh2-1t64:arm64=1.11.1-1 Downloading dependency 4 of 221: libmount1:arm64=2.40.2-9 Downloading dependency 5 of 221: cpp-14:arm64=14.2.0-7 Downloading dependency 6 of 221: libsmartcols1:arm64=2.40.2-9 Downloading dependency 7 of 221: grep:arm64=3.11-4 Downloading dependency 8 of 221: cmake-data:arm64=3.30.5-1 Downloading dependency 9 of 221: libboost-dev:arm64=1.83.0.2+b2 Downloading dependency 10 of 221: libbinutils:arm64=2.43.1-5 Downloading dependency 11 of 221: libudev1:arm64=256.7-2 Downloading dependency 12 of 221: libzstd-dev:arm64=1.5.6+dfsg-1 Downloading dependency 13 of 221: 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29 of 221: libpam-modules:arm64=1.5.3-7 Downloading dependency 30 of 221: libjpeg62-turbo:arm64=1:2.1.5-3 Downloading dependency 31 of 221: perl:arm64=5.40.0-6 Downloading dependency 32 of 221: sensible-utils:arm64=0.0.24 Downloading dependency 33 of 221: debianutils:arm64=5.20 Downloading dependency 34 of 221: libunistring5:arm64=1.2-1 Downloading dependency 35 of 221: g++:arm64=4:14.2.0-1 Downloading dependency 36 of 221: libgssapi-krb5-2:arm64=1.21.3-3 Downloading dependency 37 of 221: libcppunit-dev:arm64=1.15.1-4+b2 Downloading dependency 38 of 221: libcc1-0:arm64=14.2.0-7 Downloading dependency 39 of 221: libmd0:arm64=1.1.0-2 Downloading dependency 40 of 221: libc-dev-bin:arm64=2.40-3 Downloading dependency 41 of 221: libpam0g:arm64=1.5.3-7 Downloading dependency 42 of 221: groff-base:arm64=1.23.0-5 Downloading dependency 43 of 221: libjsoncpp26:arm64=1.9.6-2 Downloading dependency 44 of 221: libnettle8t64:arm64=3.10-1 Downloading dependency 45 of 221: 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61 of 221: file:arm64=1:5.45-3 Downloading dependency 62 of 221: libk5crypto3:arm64=1.21.3-3 Downloading dependency 63 of 221: libunbound8:arm64=1.22.0-1 Downloading dependency 64 of 221: libkrb5support0:arm64=1.21.3-3 Downloading dependency 65 of 221: cpp:arm64=4:14.2.0-1 Downloading dependency 66 of 221: libp11-kit0:arm64=0.25.5-2 Downloading dependency 67 of 221: libcppunit-1.15-0:arm64=1.15.1-4+b2 Downloading dependency 68 of 221: libmagic-mgc:arm64=1:5.45-3 Downloading dependency 69 of 221: dash:arm64=0.5.12-9 Downloading dependency 70 of 221: libperl5.40:arm64=5.40.0-6 Downloading dependency 71 of 221: perl-modules-5.40:arm64=5.40.0-6 Downloading dependency 72 of 221: binutils-aarch64-linux-gnu:arm64=2.43.1-5 Downloading dependency 73 of 221: libpcre2-8-0:arm64=10.42-4+b1 Downloading dependency 74 of 221: libcap-ng0:arm64=0.8.5-3 Downloading dependency 75 of 221: libhdf5-cpp-103-1t64:arm64=1.10.10+repack-4 Downloading dependency 76 of 221: libssl3t64:arm64=3.3.2-2 Downloading dependency 77 of 221: dh-autoreconf:arm64=20 Downloading dependency 78 of 221: dpkg:arm64=1.22.11 Downloading dependency 79 of 221: libc6-dev:arm64=2.40-3 Downloading dependency 80 of 221: libpam-runtime:arm64=1.5.3-7 Downloading dependency 81 of 221: librtmp-dev:arm64=2.4+20151223.gitfa8646d.1-2+b4 Downloading dependency 82 of 221: libhdf5-hl-100t64:arm64=1.10.10+repack-4 Downloading dependency 83 of 221: libmpc3:arm64=1.3.1-1+b2 Downloading dependency 84 of 221: libblkid1:arm64=2.40.2-9 Downloading dependency 85 of 221: autoconf:arm64=2.72-3 Downloading dependency 86 of 221: libhwasan0:arm64=14.2.0-7 Downloading dependency 87 of 221: libtasn1-6:arm64=4.19.0-3+b2 Downloading dependency 88 of 221: libuchardet0:arm64=0.0.8-1+b1 Downloading dependency 89 of 221: libpsl5t64:arm64=0.21.2-1.1 Downloading dependency 90 of 221: libaudit-common:arm64=1:4.0.1-1 Downloading dependency 91 of 221: libubsan1:arm64=14.2.0-7 Downloading dependency 92 of 221: libkeyutils1:arm64=1.6.3-4 Downloading dependency 93 of 221: libselinux1:arm64=3.7-3 Downloading dependency 94 of 221: libjpeg62-turbo-dev:arm64=1:2.1.5-3 Downloading dependency 95 of 221: libcurl4-openssl-dev:arm64=8.10.1-2 Downloading dependency 96 of 221: libp11-kit-dev:arm64=0.25.5-2 Downloading dependency 97 of 221: gettext:arm64=0.22.5-2 Downloading dependency 98 of 221: coreutils:arm64=9.5-1 Downloading dependency 99 of 221: liblz4-1:arm64=1.9.4-3 Downloading dependency 100 of 221: util-linux:arm64=2.40.2-9 Downloading dependency 101 of 221: dh-strip-nondeterminism:arm64=1.14.0-1 Downloading dependency 102 of 221: libsframe1:arm64=2.43.1-5 Downloading dependency 103 of 221: libgnutls28-dev:arm64=3.8.6-2 Downloading dependency 104 of 221: gcc-14-base:arm64=14.2.0-7 Downloading dependency 105 of 221: libelf1t64:arm64=0.192-4 Downloading dependency 106 of 221: binutils-common:arm64=2.43.1-5 Downloading dependency 107 of 221: libc-bin:arm64=2.40-3 Downloading dependency 108 of 221: libjansson4:arm64=2.14-2+b2 Downloading dependency 109 of 221: libgcc-14-dev:arm64=14.2.0-7 Downloading dependency 110 of 221: libhdf5-hl-fortran-100t64:arm64=1.10.10+repack-4 Downloading dependency 111 of 221: liblzma5:arm64=5.6.3-1 Downloading dependency 112 of 221: libarchive-zip-perl:arm64=1.68-1 Downloading dependency 113 of 221: base-files:arm64=13.5 Downloading dependency 114 of 221: libjpeg-dev:arm64=1:2.1.5-3 Downloading dependency 115 of 221: make:arm64=4.3-4.1 Downloading dependency 116 of 221: libhdf5-103-1t64:arm64=1.10.10+repack-4 Downloading dependency 117 of 221: linux-libc-dev:arm64=6.11.4-1 Downloading dependency 118 of 221: openssl-provider-legacy:arm64=3.3.2-2 Downloading dependency 119 of 221: gcc-14-aarch64-linux-gnu:arm64=14.2.0-7 Downloading dependency 120 of 221: sysvinit-utils:arm64=3.11-1 Downloading dependency 121 of 221: hostname:arm64=3.25 Downloading dependency 122 of 221: libasan8:arm64=14.2.0-7 Downloading dependency 123 of 221: libgmp-dev:arm64=2:6.3.0+dfsg-2+b1 Downloading dependency 124 of 221: libssl-dev:arm64=3.3.2-2 Downloading dependency 125 of 221: libaudit1:arm64=1:4.0.1-1 Downloading dependency 126 of 221: libaec-dev:arm64=1.1.3-1 Downloading dependency 127 of 221: sed:arm64=4.9-2 Downloading dependency 128 of 221: autotools-dev:arm64=20220109.1 Downloading dependency 129 of 221: libisl23:arm64=0.27-1 Downloading dependency 130 of 221: librtmp1:arm64=2.4+20151223.gitfa8646d.1-2+b4 Downloading dependency 131 of 221: libpkgconf3:arm64=1.8.1-4 Downloading dependency 132 of 221: usr-is-merged:arm64=39Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 usr-is-merged all 39 [5572 B] Fetched 5572 B in 0s (241 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy4zu053x/usr-is-merged_39_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 bsdutils arm64 1:2.40.2-9 [104 kB] Fetched 104 kB in 0s (4315 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.40.2-9_arm64.deb' to '/srv/rebuilderd/tmp/tmpd1z8w_9x/bsdutils_2.40.2-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libbz2-1.0 arm64 1.0.8-6 [37.8 kB] Fetched 37.8 kB in 0s (1576 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd4puk2dh/libbz2-1.0_1.0.8-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libpam-modules-bin arm64 1.5.3-7 [53.2 kB] Fetched 53.2 kB in 0s (2232 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk3h_zp0u/libpam-modules-bin_1.5.3-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libgdbm-compat4t64 arm64 1.24-2 [50.3 kB] Fetched 50.3 kB in 0s (2123 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn64imk_7/libgdbm-compat4t64_1.24-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libidn2-0 arm64 2.3.7-2 [127 kB] Fetched 127 kB in 0s (5309 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0zd158c0/libidn2-0_2.3.7-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 build-essential arm64 12.12 [4624 B] Fetched 4624 B in 0s (198 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqtyh2k3e/build-essential_12.12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Fetched 26.1 kB in 0s (176 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcb83nxun/pkgconf_1.8.1-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 readline-common all 8.2-5 [69.3 kB] Fetched 69.3 kB in 0s (589 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp3o4keb5/readline-common_8.2-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Fetched 100 kB in 0s (4254 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.45-3_arm64.deb' to '/srv/rebuilderd/tmp/tmppnug3_t9/libmagic1t64_5.45-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 bash arm64 5.2.32-1+b2 [1453 kB] Fetched 1453 kB in 0s (28.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf1vkwxoo/bash_5.2.32-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 debconf all 1.5.87 [119 kB] Fetched 119 kB in 0s (4908 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw79mao0d/debconf_1.5.87_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libatomic1 arm64 14.2.0-7 [10.1 kB] Fetched 10.1 kB in 0s (437 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmrleqru7/libatomic1_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libcurl4t64 arm64 8.10.1-2 [322 kB] Fetched 322 kB in 0s (11.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr69n33um/libcurl4t64_8.10.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libuv1t64 arm64 1.48.0-6 [142 kB] Fetched 142 kB in 0s (5550 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd11e8l0g/libuv1t64_1.48.0-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 ncurses-bin arm64 6.5-2 [428 kB] Fetched 428 kB in 0s (14.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpahha731o/ncurses-bin_6.5-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Fetched 29.6 kB in 0s (206 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp58a86yc2/pkgconf-bin_1.8.1-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libtool all 2.4.7-7 [517 kB] Fetched 517 kB in 0s (16.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgiwkt54m/libtool_2.4.7-7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libexpat1 arm64 2.6.3-2 [90.1 kB] Fetched 90.1 kB in 0s (3608 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpckantian/libexpat1_2.6.3-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libitm1 arm64 14.2.0-7 [24.2 kB] Fetched 24.2 kB in 0s (1050 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsf3pdj9i/libitm1_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libbrotli-dev arm64 1.1.0-2+b4 [308 kB] Fetched 308 kB in 0s (2535 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1x0l4anv/libbrotli-dev_1.1.0-2+b4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 perl-base arm64 5.40.0-6 [1534 kB] Fetched 1534 kB in 0s (31.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzz0arq8x/perl-base_5.40.0-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 init-system-helpers all 1.67 [38.7 kB] Fetched 38.7 kB in 0s (1718 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprxwbr_g2/init-system-helpers_1.67_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Fetched 62.3 kB in 0s (2547 kB/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-6_arm64.deb' to '/srv/rebuilderd/tmp/tmpczkxw80y/libproc2-0_4.0.4-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libnghttp2-14 arm64 1.63.0-1 [71.2 kB] Fetched 71.2 kB in 0s (3064 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxd3nnpl9/libnghttp2-14_1.63.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7 [10.1 MB] Fetched 10.1 MB in 0s (38.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp39xxt_7t/g++-14-aarch64-linux-gnu_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libicu72 arm64 72.1-5 [9224 kB] Fetched 9224 kB in 0s (53.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2u6m7icl/libicu72_72.1-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libncursesw6 arm64 6.5-2 [124 kB] Fetched 124 kB in 0s (5083 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsbfo_89j/libncursesw6_6.5-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 nettle-dev arm64 3.10-1 [1323 kB] Fetched 1323 kB in 0s (3387 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjwl3tw14/nettle-dev_3.10-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 m4 arm64 1.4.19-4 [277 kB] Fetched 277 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbyhdopc8/m4_1.4.19-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B] Fetched 1440 B in 0s (40.6 kB/s) dpkg-name: info: moved 'gcc-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpbwkxhjz3/gcc-aarch64-linux-gnu_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Fetched 22.8 kB in 0s (957 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4e1x8_ns/libcom-err2_1.47.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libdpkg-perl all 1.22.11 [644 kB] Fetched 644 kB in 0s (20.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqael439t/libdpkg-perl_1.22.11_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 bc arm64 1.07.1-4 [101 kB] Fetched 101 kB in 1s (198 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_wsrxpd5/bc_1.07.1-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 tar arm64 1.35+dfsg-3 [801 kB] Fetched 801 kB in 0s (21.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpadufu47s/tar_1.35+dfsg-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libpsl-dev arm64 0.21.2-1.1 [77.7 kB] Fetched 77.7 kB in 0s (272 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqxevqxcp/libpsl-dev_0.21.2-1.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 dpkg-dev all 1.22.11 [1332 kB] Fetched 1332 kB in 0s (31.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp84ocikeb/dpkg-dev_1.22.11_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 cmake arm64 3.30.5-1 [9403 kB] Fetched 9403 kB in 0s (46.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoantlmy6/cmake_3.30.5-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libctf-nobfd0 arm64 2.43.1-5 [151 kB] Fetched 151 kB in 0s (6173 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsq_gyyf8/libctf-nobfd0_2.43.1-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-9 [629 kB] Fetched 629 kB in 0s (19.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvm46vase/libdb5.3t64_5.3.28+dfsg2-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libhdf5-dev arm64 1.10.10+repack-4 [2697 kB] Fetched 2697 kB in 0s (8010 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9a7hr2jl/libhdf5-dev_1.10.10+repack-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libtinfo6 arm64 6.5-2 [336 kB] Fetched 336 kB in 0s (10.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwtpbvk9m/libtinfo6_6.5-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Fetched 198 kB in 0s (7825 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiarwoo4s/gettext-base_0.22.5-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libc6 arm64 2.40-3 [2453 kB] Fetched 2453 kB in 0s (30.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpub3l9bxd/libc6_2.40-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libgmp10 arm64 2:6.3.0+dfsg-2+b1 [533 kB] Fetched 533 kB in 0s (17.4 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-2+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpylxy_win/libgmp10_6.3.0+dfsg-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libgnutls-dane0t64 arm64 3.8.6-2 [436 kB] Fetched 436 kB in 0s (1228 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp53mgdduh/libgnutls-dane0t64_3.8.6-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Fetched 310 kB in 0s (8771 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3hbb4snd/libkrb5-3_1.21.3-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libnghttp2-dev arm64 1.63.0-1 [112 kB] Fetched 112 kB in 0s (341 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1wqynel4/libnghttp2-dev_1.63.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libxxhash0 arm64 0.8.2-2+b1 [22.1 kB] Fetched 22.1 kB in 0s (931 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0o668rp6/libxxhash0_0.8.2-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B] Fetched 5136 B in 0s (222 kB/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpb2yw9bup/gcc_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 dwz arm64 0.15-1+b1 [102 kB] Fetched 102 kB in 0s (4180 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj8qwbdyo/dwz_0.15-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [169 kB] Fetched 169 kB in 0s (685 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1g_rewdd/libevent-2.1-7t64_2.1.12-stable-10_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libcap2 arm64 1:2.66-5 [26.7 kB] Fetched 26.7 kB in 0s (1140 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.66-5_arm64.deb' to '/srv/rebuilderd/tmp/tmp6nuhnicd/libcap2_2.66-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Fetched 20.9 kB in 0s (919 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp04m2a8y0/libffi8_3.4.6-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Fetched 388 kB in 0s (2722 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmy03l85b/libssh2-1-dev_1.11.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 diffutils arm64 1:3.10-1 [368 kB] Fetched 368 kB in 0s (12.7 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpkh9vlejf/diffutils_3.10-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libgnutls-openssl27t64 arm64 3.8.6-2 [436 kB] Fetched 436 kB in 0s (1731 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzmcilpwb/libgnutls-openssl27t64_3.8.6-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Fetched 175 kB in 0s (7326 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4y_blo0/libldap-2.5-0_2.5.18+dfsg-3+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 base-passwd arm64 3.6.5 [52.8 kB] Fetched 52.8 kB in 0s (2204 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprs2acdft/base-passwd_3.6.5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 gzip arm64 1.12-1.1 [130 kB] Fetched 130 kB in 0s (4965 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbixkp__g/gzip_1.12-1.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libidn2-dev arm64 2.3.7-2 [122 kB] Fetched 122 kB in 0s (415 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4oe1baq9/libidn2-dev_2.3.7-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libsystemd0 arm64 256.7-2 [356 kB] Fetched 356 kB in 0s (13.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp98dgn_g4/libsystemd0_256.7-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libacl1 arm64 2.3.2-2 [31.9 kB] Fetched 31.9 kB in 0s (1354 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1mj34s9a/libacl1_2.3.2-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Fetched 19.5 kB in 0s (862 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8hkx3yvt/libfile-stripnondeterminism-perl_1.14.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libstdc++-14-dev arm64 14.2.0-7 [2265 kB] Fetched 2265 kB in 0s (36.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph45u4r8r/libstdc++-14-dev_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libboost1.83-dev arm64 1.83.0-3.2 [10.6 MB] Fetched 10.6 MB in 1s (16.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl2jx9d70/libboost1.83-dev_1.83.0-3.2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libaec0 arm64 1.1.3-1 [22.1 kB] Fetched 22.1 kB in 0s (343 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn7h2qbi0/libaec0_1.1.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Fetched 89.7 kB in 0s (3743 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ane_kmq/libdebhelper-perl_13.20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 automake all 1:1.16.5-1.3 [823 kB] Fetched 823 kB in 0s (19.3 MB/s) dpkg-name: info: moved 'automake_1%3a1.16.5-1.3_all.deb' to '/srv/rebuilderd/tmp/tmpkupzuyv1/automake_1.16.5-1.3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libattr1 arm64 1:2.5.2-2 [22.5 kB] Fetched 22.5 kB in 0s (949 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-2_arm64.deb' to '/srv/rebuilderd/tmp/tmpxems1_p3/libattr1_2.5.2-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libhogweed6t64 arm64 3.10-1 [331 kB] Fetched 331 kB in 0s (10.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa38iva92/libhogweed6t64_3.10-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 hdf5-helpers arm64 1.10.10+repack-4 [23.5 kB] Fetched 23.5 kB in 0s (91.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_v1iphst/hdf5-helpers_1.10.10+repack-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libcrypt1 arm64 1:4.4.36-5 [91.6 kB] Fetched 91.6 kB in 0s (3698 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.36-5_arm64.deb' to '/srv/rebuilderd/tmp/tmp4gfboodf/libcrypt1_4.4.36-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libdebconfclient0 arm64 0.272 [10.2 kB] Fetched 10.2 kB in 0s (423 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbf7xccoh/libdebconfclient0_0.272_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 debhelper all 13.20 [915 kB] Fetched 915 kB in 0s (24.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbdc2booh/debhelper_13.20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (943 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvr2ycnwt/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Fetched 55.4 kB in 0s (2335 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8g9qhbxb/libsasl2-2_2.1.28+dfsg1-8_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libbrotli1 arm64 1.1.0-2+b4 [292 kB] Fetched 292 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkjp72fba/libbrotli1_1.1.0-2+b4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libgdbm6t64 arm64 1.24-2 [74.0 kB] Fetched 74.0 kB in 0s (3045 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppqlsmalx/libgdbm6t64_1.24-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7 [9164 kB] Fetched 9164 kB in 0s (51.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq1w7tahb/cpp-14-aarch64-linux-gnu_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 gcc-14 arm64 14.2.0-7 [517 kB] Fetched 517 kB in 0s (16.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr0gfbr54/gcc-14_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libarchive13t64 arm64 3.7.4-1 [323 kB] Fetched 323 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmbap98uf/libarchive13t64_3.7.4-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-4 [88.1 kB] Fetched 88.1 kB in 0s (269 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphae__t6r/libhdf5-fortran-102t64_1.10.10+repack-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libzstd1 arm64 1.5.6+dfsg-1 [263 kB] Fetched 263 kB in 0s (8999 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmul18fv2/libzstd1_1.5.6+dfsg-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libuuid1 arm64 2.40.2-9 [35.5 kB] Fetched 35.5 kB in 0s (1443 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5w7qc6or/libuuid1_2.40.2-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Fetched 40.2 kB in 0s (1583 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmyp_bl_7/libpipeline1_1.5.8-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libgomp1 arm64 14.2.0-7 [124 kB] Fetched 124 kB in 0s (4922 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0w0ywkdf/libgomp1_14.2.0-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libsz2 arm64 1.1.3-1 [7664 B] Fetched 7664 B in 0s (52.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0jc4rwjv/libsz2_1.1.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 bzip2 arm64 1.0.8-6 [39.5 kB] Fetched 39.5 kB in 0s (1671 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8zu3183f/bzip2_1.0.8-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241027T215652Z sid/main arm64 libgnutls30t64 arm64 3.8.6-2 [1353 kB] Fetched 1353 kB in 0s (22.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa0p47wgm/libgnutls30t64_3.8.6-2_arm64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture arm64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_arm64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpff2def27/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture arm64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.svseoy0eT2 as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.svseoy0eT2 127.0.0.1 - - [22/Sep/2025 07:10:06] code 404, message File not found 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:46085 ./ InRelease 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:46085 ./ Release [462 B] 127.0.0.1 - - [22/Sep/2025 07:10:06] code 404, message File not found 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:46085 ./ Release.gpg 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:46085 ./ Packages [276 kB] Fetched 276 kB in 0s (8363 kB/s) Reading package lists... usr-is-merged found -- running merged-usr setup hook dpkg-deb: building package 'usr-is-merged' in '/srv/rebuilderd/tmp/mmdebstrap.svseoy0eT2/tmp/tmp.ygQhkUgZgE/usr-is-merged.deb'. Selecting previously unselected package usr-is-merged. (Reading database ... 0 files and directories currently installed.) Preparing to unpack .../usr-is-merged.deb ... Unpacking usr-is-merged (1) ... touch: cannot touch '/run/needrestart/unpacked': Permission denied Setting up usr-is-merged (1) ... I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./gcc-14-base_14.2.0-7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libc6_2.40-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libgcc-s1_14.2.0-7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./mawk_1.3.4.20240905-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./base-files_13.5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libtinfo6_6.5-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./debianutils_5.20_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./bash_5.2.32-1%2bb2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libcap2_2.66-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libsystemd0_256.7-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./bsdutils_2.40.2-9_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libacl1_2.3.2-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libattr1_2.5.2-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libgmp10_6.3.0%2bdfsg-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libpcre2-8-0_10.42-4%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libselinux1_3.7-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libzstd1_1.5.6%2bdfsg-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libssl3t64_3.3.2-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./openssl-provider-legacy_3.3.2-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./coreutils_9.5-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./dash_0.5.12-9_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./diffutils_3.10-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libbz2-1.0_1.0.8-6_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./liblzma5_5.6.3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libmd0_1.1.0-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./tar_1.35%2bdfsg-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./dpkg_1.22.11_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./findutils_4.10.0-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./grep_3.11-4_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./gzip_1.12-1.1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./hostname_3.25_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./ncurses-bin_6.5-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libcrypt1_4.4.36-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./perl-base_5.40.0-6_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./sed_4.9-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libaudit-common_4.0.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libcap-ng0_0.8.5-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libaudit1_4.0.1-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libdb5.3t64_5.3.28%2bdfsg2-9_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./debconf_1.5.87_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libpam0g_1.5.3-7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libpam-modules-bin_1.5.3-7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libpam-modules_1.5.3-7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libpam-runtime_1.5.3-7_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libblkid1_2.40.2-9_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libmount1_2.40.2-9_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libsmartcols1_2.40.2-9_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libudev1_256.7-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libuuid1_2.40.2-9_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./util-linux_2.40.2-9_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libdebconfclient0_0.272_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./base-passwd_3.6.5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./init-system-helpers_1.67_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./libc-bin_2.40-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./ncurses-base_6.5-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:06] "GET /./sysvinit-utils_3.11-1_arm64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.svseoy0eT2 127.0.0.1 - - [22/Sep/2025 07:10:09] code 404, message File not found 127.0.0.1 - - [22/Sep/2025 07:10:09] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:46085 ./ InRelease 127.0.0.1 - - [22/Sep/2025 07:10:09] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:46085 ./ Release 127.0.0.1 - - [22/Sep/2025 07:10:09] code 404, message File not found 127.0.0.1 - - [22/Sep/2025 07:10:09] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:46085 ./ Release.gpg Reading package lists... usr-is-merged found -- running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.svseoy0eT2 dummy usr-is-merged package installed -- running merged-usr essential hook Reading package lists... Building dependency tree... The following packages will be upgraded: usr-is-merged 127.0.0.1 - - [22/Sep/2025 07:10:16] "GET /./usr-is-merged_39_all.deb HTTP/1.1" 200 - 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5572 B of archives. After this operation, 13.3 kB of additional disk space will be used. Get:1 http://localhost:46085 ./ usr-is-merged 39 [5572 B] Fetched 5572 B in 0s (0 B/s) Chrooting into /srv/rebuilderd/tmp/mmdebstrap.svseoy0eT2/ (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 3522 files and directories currently installed.) Preparing to unpack .../usr-is-merged_39_all.deb ... Unpacking usr-is-merged (39) over (1) ... Chrooting into /srv/rebuilderd/tmp/mmdebstrap.svseoy0eT2/ Setting up usr-is-merged (39) ... Chrooting into /srv/rebuilderd/tmp/mmdebstrap.svseoy0eT2/ I: installing remaining packages inside the chroot... 127.0.0.1 - - [22/Sep/2025 07:10:16] "GET /./perl-modules-5.40_5.40.0-6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:16] "GET /./libgdbm6t64_1.24-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:16] "GET /./libgdbm-compat4t64_1.24-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:16] "GET /./libperl5.40_5.40.0-6_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./perl_5.40.0-6_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./sensible-utils_0.0.24_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./libstdc%2b%2b6_14.2.0-7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./libuchardet0_0.0.8-1%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./groff-base_1.23.0-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./bsdextrautils_2.40.2-9_arm64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./libpsl-dev_0.21.2-1.1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./libssl-dev_3.3.2-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./libssh2-1-dev_1.11.1-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./libcurl4-openssl-dev_8.10.1-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./libhdf5-fortran-102t64_1.10.10%2brepack-4_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./libhdf5-hl-fortran-100t64_1.10.10%2brepack-4_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./libjpeg-dev_2.1.5-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./libaec-dev_1.1.3-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./hdf5-helpers_1.10.10%2brepack-4_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./libhdf5-dev_1.10.10%2brepack-4_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [22/Sep/2025 07:10:17] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpff2def27/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.svseoy0eT2 Reading package lists... Building dependency tree... Reading state information... libreadline8t64 is already the newest version (8.2-5). libreadline8t64 set to manually installed. libtasn1-6-dev is already the newest version (4.19.0-3+b2). libtasn1-6-dev set to manually installed. libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. libmount1 is already the newest version (2.40.2-9). cpp-14 is already the newest version (14.2.0-7). cpp-14 set to manually installed. libsmartcols1 is already the newest version (2.40.2-9). grep is already the newest version (3.11-4). cmake-data is already the newest version (3.30.5-1). cmake-data set to manually installed. libboost-dev is already the newest version (1.83.0.2+b2). libboost-dev set to manually installed. libbinutils is already the newest version (2.43.1-5). libbinutils set to manually installed. libudev1 is already the newest version (256.7-2). libzstd-dev is already the newest version (1.5.6+dfsg-1). libzstd-dev set to manually installed. libgcc-s1 is already the newest version (14.2.0-7). libgfortran5 is already the newest version (14.2.0-7). libgfortran5 set to manually installed. liblsan0 is already the newest version (14.2.0-7). liblsan0 set to manually installed. libhdf5-hl-cpp-100t64 is already the newest version (1.10.10+repack-4). libhdf5-hl-cpp-100t64 set to manually installed. patch is already the newest version (2.7.6-7). patch set to manually installed. mawk is already the newest version (1.3.4.20240905-1). libctf0 is already the newest version (2.43.1-5). libctf0 set to manually installed. libstdc++6 is already the newest version (14.2.0-7). libstdc++6 set to manually installed. binutils is already the newest version (2.43.1-5). binutils set to manually installed. cpp-aarch64-linux-gnu is already the newest version (4:14.2.0-1). cpp-aarch64-linux-gnu set to manually installed. procps is already the newest version (2:4.0.4-6). procps set to manually installed. g++-aarch64-linux-gnu is already the newest version (4:14.2.0-1). g++-aarch64-linux-gnu set to manually installed. bsdextrautils is already the newest version (2.40.2-9). bsdextrautils set to manually installed. libcrypt-dev is already the newest version (1:4.4.36-5). libcrypt-dev set to manually installed. libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-2+b1). libgmpxx4ldbl set to manually installed. ncurses-base is already the newest version (6.5-2). libpam-modules is already the newest version (1.5.3-7). libjpeg62-turbo is already the newest version (1:2.1.5-3). libjpeg62-turbo set to manually installed. perl is already the newest version (5.40.0-6). perl set to manually installed. sensible-utils is already the newest version (0.0.24). sensible-utils set to manually installed. debianutils is already the newest version (5.20). libunistring5 is already the newest version (1.2-1). libunistring5 set to manually installed. g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. libgssapi-krb5-2 is already the newest version (1.21.3-3). libgssapi-krb5-2 set to manually installed. libcppunit-dev is already the newest version (1.15.1-4+b2). libcppunit-dev set to manually installed. libcc1-0 is already the newest version (14.2.0-7). libcc1-0 set to manually installed. libmd0 is already the newest version (1.1.0-2). libc-dev-bin is already the newest version (2.40-3). libc-dev-bin set to manually installed. libpam0g is already the newest version (1.5.3-7). groff-base is already the newest version (1.23.0-5). groff-base set to manually installed. libjsoncpp26 is already the newest version (1.9.6-2). libjsoncpp26 set to manually installed. libnettle8t64 is already the newest version (3.10-1). libnettle8t64 set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1). zlib1g-dev set to manually installed. libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-0.1). libxml2 set to manually installed. librhash1 is already the newest version (1.4.5-1). librhash1 set to manually installed. findutils is already the newest version (4.10.0-3). libgprofng0 is already the newest version (2.43.1-5). libgprofng0 set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-8). libsasl2-modules-db set to manually installed. man-db is already the newest version (2.13.0-1). man-db set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1). g++-14 is already the newest version (14.2.0-7). g++-14 set to manually installed. libtsan2 is already the newest version (14.2.0-7). libtsan2 set to manually installed. xz-utils is already the newest version (5.6.3-1). xz-utils set to manually installed. libseccomp2 is already the newest version (2.5.5-1+b1). libseccomp2 set to manually installed. autopoint is already the newest version (0.22.5-2). autopoint set to manually installed. libmpfr6 is already the newest version (4.2.1-1+b1). libmpfr6 set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. file is already the newest version (1:5.45-3). file set to manually installed. libk5crypto3 is already the newest version (1.21.3-3). libk5crypto3 set to manually installed. libunbound8 is already the newest version (1.22.0-1). libunbound8 set to manually installed. libkrb5support0 is already the newest version (1.21.3-3). libkrb5support0 set to manually installed. cpp is already the newest version (4:14.2.0-1). cpp set to manually installed. libp11-kit0 is already the newest version (0.25.5-2). libp11-kit0 set to manually installed. libcppunit-1.15-0 is already the newest version (1.15.1-4+b2). libcppunit-1.15-0 set to manually installed. libmagic-mgc is already the newest version (1:5.45-3). libmagic-mgc set to manually installed. dash is already the newest version (0.5.12-9). libperl5.40 is already the newest version (5.40.0-6). libperl5.40 set to manually installed. perl-modules-5.40 is already the newest version (5.40.0-6). perl-modules-5.40 set to manually installed. binutils-aarch64-linux-gnu is already the newest version (2.43.1-5). binutils-aarch64-linux-gnu set to manually installed. libpcre2-8-0 is already the newest version (10.42-4+b1). libcap-ng0 is already the newest version (0.8.5-3). libhdf5-cpp-103-1t64 is already the newest version (1.10.10+repack-4). libhdf5-cpp-103-1t64 set to manually installed. libssl3t64 is already the newest version (3.3.2-2). dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. dpkg is already the newest version (1.22.11). libc6-dev is already the newest version (2.40-3). libc6-dev set to manually installed. libpam-runtime is already the newest version (1.5.3-7). librtmp-dev is already the newest version (2.4+20151223.gitfa8646d.1-2+b4). librtmp-dev set to manually installed. libhdf5-hl-100t64 is already the newest version (1.10.10+repack-4). libhdf5-hl-100t64 set to manually installed. libmpc3 is already the newest version (1.3.1-1+b2). libmpc3 set to manually installed. libblkid1 is already the newest version (2.40.2-9). autoconf is already the newest version (2.72-3). autoconf set to manually installed. libhwasan0 is already the newest version (14.2.0-7). libhwasan0 set to manually installed. libtasn1-6 is already the newest version (4.19.0-3+b2). libtasn1-6 set to manually installed. libuchardet0 is already the newest version (0.0.8-1+b1). libuchardet0 set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1). libpsl5t64 set to manually installed. libaudit-common is already the newest version (1:4.0.1-1). libubsan1 is already the newest version (14.2.0-7). libubsan1 set to manually installed. libkeyutils1 is already the newest version (1.6.3-4). libkeyutils1 set to manually installed. libselinux1 is already the newest version (3.7-3). libjpeg62-turbo-dev is already the newest version (1:2.1.5-3). libjpeg62-turbo-dev set to manually installed. libcurl4-openssl-dev is already the newest version (8.10.1-2). libcurl4-openssl-dev set to manually installed. libp11-kit-dev is already the newest version (0.25.5-2). libp11-kit-dev set to manually installed. gettext is already the newest version (0.22.5-2). gettext set to manually installed. coreutils is already the newest version (9.5-1). liblz4-1 is already the newest version (1.9.4-3). liblz4-1 set to manually installed. util-linux is already the newest version (2.40.2-9). dh-strip-nondeterminism is already the newest version (1.14.0-1). dh-strip-nondeterminism set to manually installed. libsframe1 is already the newest version (2.43.1-5). libsframe1 set to manually installed. libgnutls28-dev is already the newest version (3.8.6-2). libgnutls28-dev set to manually installed. gcc-14-base is already the newest version (14.2.0-7). libelf1t64 is already the newest version (0.192-4). libelf1t64 set to manually installed. binutils-common is already the newest version (2.43.1-5). binutils-common set to manually installed. libc-bin is already the newest version (2.40-3). libjansson4 is already the newest version (2.14-2+b2). libjansson4 set to manually installed. libgcc-14-dev is already the newest version (14.2.0-7). libgcc-14-dev set to manually installed. libhdf5-hl-fortran-100t64 is already the newest version (1.10.10+repack-4). libhdf5-hl-fortran-100t64 set to manually installed. liblzma5 is already the newest version (5.6.3-1). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. base-files is already the newest version (13.5). libjpeg-dev is already the newest version (1:2.1.5-3). libjpeg-dev set to manually installed. make is already the newest version (4.3-4.1). make set to manually installed. libhdf5-103-1t64 is already the newest version (1.10.10+repack-4). libhdf5-103-1t64 set to manually installed. linux-libc-dev is already the newest version (6.11.4-1). linux-libc-dev set to manually installed. openssl-provider-legacy is already the newest version (3.3.2-2). gcc-14-aarch64-linux-gnu is already the newest version (14.2.0-7). gcc-14-aarch64-linux-gnu set to manually installed. sysvinit-utils is already the newest version (3.11-1). hostname is already the newest version (3.25). libasan8 is already the newest version (14.2.0-7). libasan8 set to manually installed. libgmp-dev is already the newest version (2:6.3.0+dfsg-2+b1). libgmp-dev set to manually installed. libssl-dev is already the newest version (3.3.2-2). libssl-dev set to manually installed. libaudit1 is already the newest version (1:4.0.1-1). libaec-dev is already the newest version (1.1.3-1). libaec-dev set to manually installed. sed is already the newest version (4.9-2). autotools-dev is already the newest version (20220109.1). autotools-dev set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b4). librtmp1 set to manually installed. libpkgconf3 is already the newest version (1.8.1-4). libpkgconf3 set to manually installed. usr-is-merged is already the newest version (39). bsdutils is already the newest version (1:2.40.2-9). libbz2-1.0 is already the newest version (1.0.8-6). libpam-modules-bin is already the newest version (1.5.3-7). libgdbm-compat4t64 is already the newest version (1.24-2). libgdbm-compat4t64 set to manually installed. libidn2-0 is already the newest version (2.3.7-2). libidn2-0 set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. pkgconf is already the newest version (1.8.1-4). pkgconf set to manually installed. readline-common is already the newest version (8.2-5). readline-common set to manually installed. libmagic1t64 is already the newest version (1:5.45-3). libmagic1t64 set to manually installed. bash is already the newest version (5.2.32-1+b2). debconf is already the newest version (1.5.87). libatomic1 is already the newest version (14.2.0-7). libatomic1 set to manually installed. libcurl4t64 is already the newest version (8.10.1-2). libcurl4t64 set to manually installed. libuv1t64 is already the newest version (1.48.0-6). libuv1t64 set to manually installed. ncurses-bin is already the newest version (6.5-2). pkgconf-bin is already the newest version (1.8.1-4). pkgconf-bin set to manually installed. libtool is already the newest version (2.4.7-7). libtool set to manually installed. libexpat1 is already the newest version (2.6.3-2). libexpat1 set to manually installed. libitm1 is already the newest version (14.2.0-7). libitm1 set to manually installed. libbrotli-dev is already the newest version (1.1.0-2+b4). libbrotli-dev set to manually installed. perl-base is already the newest version (5.40.0-6). init-system-helpers is already the newest version (1.67). libproc2-0 is already the newest version (2:4.0.4-6). libproc2-0 set to manually installed. libnghttp2-14 is already the newest version (1.63.0-1). libnghttp2-14 set to manually installed. g++-14-aarch64-linux-gnu is already the newest version (14.2.0-7). g++-14-aarch64-linux-gnu set to manually installed. libicu72 is already the newest version (72.1-5). libicu72 set to manually installed. libncursesw6 is already the newest version (6.5-2). libncursesw6 set to manually installed. nettle-dev is already the newest version (3.10-1). nettle-dev set to manually installed. m4 is already the newest version (1.4.19-4). m4 set to manually installed. gcc-aarch64-linux-gnu is already the newest version (4:14.2.0-1). gcc-aarch64-linux-gnu set to manually installed. libcom-err2 is already the newest version (1.47.1-1). libcom-err2 set to manually installed. libdpkg-perl is already the newest version (1.22.11). libdpkg-perl set to manually installed. bc is already the newest version (1.07.1-4). bc set to manually installed. tar is already the newest version (1.35+dfsg-3). libpsl-dev is already the newest version (0.21.2-1.1). libpsl-dev set to manually installed. dpkg-dev is already the newest version (1.22.11). dpkg-dev set to manually installed. cmake is already the newest version (3.30.5-1). cmake set to manually installed. libctf-nobfd0 is already the newest version (2.43.1-5). libctf-nobfd0 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). libhdf5-dev is already the newest version (1.10.10+repack-4). libhdf5-dev set to manually installed. libtinfo6 is already the newest version (6.5-2). gettext-base is already the newest version (0.22.5-2). gettext-base set to manually installed. libc6 is already the newest version (2.40-3). libgmp10 is already the newest version (2:6.3.0+dfsg-2+b1). libgnutls-dane0t64 is already the newest version (3.8.6-2). libgnutls-dane0t64 set to manually installed. libkrb5-3 is already the newest version (1.21.3-3). libkrb5-3 set to manually installed. libnghttp2-dev is already the newest version (1.63.0-1). libnghttp2-dev set to manually installed. libxxhash0 is already the newest version (0.8.2-2+b1). libxxhash0 set to manually installed. gcc is already the newest version (4:14.2.0-1). gcc set to manually installed. dwz is already the newest version (0.15-1+b1). dwz set to manually installed. libevent-2.1-7t64 is already the newest version (2.1.12-stable-10). libevent-2.1-7t64 set to manually installed. libcap2 is already the newest version (1:2.66-5). libffi8 is already the newest version (3.4.6-1). libffi8 set to manually installed. libssh2-1-dev is already the newest version (1.11.1-1). libssh2-1-dev set to manually installed. diffutils is already the newest version (1:3.10-1). libgnutls-openssl27t64 is already the newest version (3.8.6-2). libgnutls-openssl27t64 set to manually installed. libldap-2.5-0 is already the newest version (2.5.18+dfsg-3+b1). libldap-2.5-0 set to manually installed. base-passwd is already the newest version (3.6.5). gzip is already the newest version (1.12-1.1). libidn2-dev is already the newest version (2.3.7-2). libidn2-dev set to manually installed. libsystemd0 is already the newest version (256.7-2). libacl1 is already the newest version (2.3.2-2). libfile-stripnondeterminism-perl is already the newest version (1.14.0-1). libfile-stripnondeterminism-perl set to manually installed. libstdc++-14-dev is already the newest version (14.2.0-7). libstdc++-14-dev set to manually installed. libboost1.83-dev is already the newest version (1.83.0-3.2). libboost1.83-dev set to manually installed. libaec0 is already the newest version (1.1.3-1). libaec0 set to manually installed. libdebhelper-perl is already the newest version (13.20). libdebhelper-perl set to manually installed. automake is already the newest version (1:1.16.5-1.3). automake set to manually installed. libattr1 is already the newest version (1:2.5.2-2). libhogweed6t64 is already the newest version (3.10-1). libhogweed6t64 set to manually installed. hdf5-helpers is already the newest version (1.10.10+repack-4). hdf5-helpers set to manually installed. libcrypt1 is already the newest version (1:4.4.36-5). libdebconfclient0 is already the newest version (0.272). debhelper is already the newest version (13.20). debhelper set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-8). libsasl2-2 set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b4). libbrotli1 set to manually installed. libgdbm6t64 is already the newest version (1.24-2). libgdbm6t64 set to manually installed. cpp-14-aarch64-linux-gnu is already the newest version (14.2.0-7). cpp-14-aarch64-linux-gnu set to manually installed. gcc-14 is already the newest version (14.2.0-7). gcc-14 set to manually installed. libarchive13t64 is already the newest version (3.7.4-1). libarchive13t64 set to manually installed. libhdf5-fortran-102t64 is already the newest version (1.10.10+repack-4). libhdf5-fortran-102t64 set to manually installed. libzstd1 is already the newest version (1.5.6+dfsg-1). libuuid1 is already the newest version (2.40.2-9). libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. libgomp1 is already the newest version (14.2.0-7). libgomp1 set to manually installed. libsz2 is already the newest version (1.1.3-1). libsz2 set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. libgnutls30t64 is already the newest version (3.8.6-2). libgnutls30t64 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.svseoy0eT2 (Reading database ... 35733 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.svseoy0eT2 I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.svseoy0eT2 I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: PID 3157 exited with exit code 0 I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.svseoy0eT2... I: success in 40.9700 seconds Downloading dependency 133 of 221: bsdutils:arm64=1:2.40.2-9 Downloading dependency 134 of 221: libbz2-1.0:arm64=1.0.8-6 Downloading dependency 135 of 221: libpam-modules-bin:arm64=1.5.3-7 Downloading dependency 136 of 221: libgdbm-compat4t64:arm64=1.24-2 Downloading dependency 137 of 221: libidn2-0:arm64=2.3.7-2 Downloading dependency 138 of 221: build-essential:arm64=12.12 Downloading dependency 139 of 221: pkgconf:arm64=1.8.1-4 Downloading dependency 140 of 221: readline-common:arm64=8.2-5 Downloading dependency 141 of 221: libmagic1t64:arm64=1:5.45-3 Downloading dependency 142 of 221: bash:arm64=5.2.32-1+b2 Downloading dependency 143 of 221: debconf:arm64=1.5.87 Downloading dependency 144 of 221: libatomic1:arm64=14.2.0-7 Downloading dependency 145 of 221: libcurl4t64:arm64=8.10.1-2 Downloading dependency 146 of 221: libuv1t64:arm64=1.48.0-6 Downloading dependency 147 of 221: ncurses-bin:arm64=6.5-2 Downloading dependency 148 of 221: pkgconf-bin:arm64=1.8.1-4 Downloading dependency 149 of 221: libtool:arm64=2.4.7-7 Downloading dependency 150 of 221: libexpat1:arm64=2.6.3-2 Downloading dependency 151 of 221: libitm1:arm64=14.2.0-7 Downloading dependency 152 of 221: libbrotli-dev:arm64=1.1.0-2+b4 Downloading dependency 153 of 221: perl-base:arm64=5.40.0-6 Downloading dependency 154 of 221: init-system-helpers:arm64=1.67 Downloading dependency 155 of 221: libproc2-0:arm64=2:4.0.4-6 Downloading dependency 156 of 221: libnghttp2-14:arm64=1.63.0-1 Downloading dependency 157 of 221: g++-14-aarch64-linux-gnu:arm64=14.2.0-7 Downloading dependency 158 of 221: libicu72:arm64=72.1-5 Downloading dependency 159 of 221: libncursesw6:arm64=6.5-2 Downloading dependency 160 of 221: nettle-dev:arm64=3.10-1 Downloading dependency 161 of 221: m4:arm64=1.4.19-4 Downloading dependency 162 of 221: gcc-aarch64-linux-gnu:arm64=4:14.2.0-1 Downloading dependency 163 of 221: libcom-err2:arm64=1.47.1-1 Downloading dependency 164 of 221: libdpkg-perl:arm64=1.22.11 Downloading dependency 165 of 221: bc:arm64=1.07.1-4 Downloading dependency 166 of 221: tar:arm64=1.35+dfsg-3 Downloading dependency 167 of 221: libpsl-dev:arm64=0.21.2-1.1 Downloading dependency 168 of 221: dpkg-dev:arm64=1.22.11 Downloading dependency 169 of 221: cmake:arm64=3.30.5-1 Downloading dependency 170 of 221: libctf-nobfd0:arm64=2.43.1-5 Downloading dependency 171 of 221: libdb5.3t64:arm64=5.3.28+dfsg2-9 Downloading dependency 172 of 221: libhdf5-dev:arm64=1.10.10+repack-4 Downloading dependency 173 of 221: libtinfo6:arm64=6.5-2 Downloading dependency 174 of 221: gettext-base:arm64=0.22.5-2 Downloading dependency 175 of 221: libc6:arm64=2.40-3 Downloading dependency 176 of 221: libgmp10:arm64=2:6.3.0+dfsg-2+b1 Downloading dependency 177 of 221: libgnutls-dane0t64:arm64=3.8.6-2 Downloading dependency 178 of 221: libkrb5-3:arm64=1.21.3-3 Downloading dependency 179 of 221: libnghttp2-dev:arm64=1.63.0-1 Downloading dependency 180 of 221: libxxhash0:arm64=0.8.2-2+b1 Downloading dependency 181 of 221: gcc:arm64=4:14.2.0-1 Downloading dependency 182 of 221: dwz:arm64=0.15-1+b1 Downloading dependency 183 of 221: libevent-2.1-7t64:arm64=2.1.12-stable-10 Downloading dependency 184 of 221: libcap2:arm64=1:2.66-5 Downloading dependency 185 of 221: libffi8:arm64=3.4.6-1 Downloading dependency 186 of 221: libssh2-1-dev:arm64=1.11.1-1 Downloading dependency 187 of 221: diffutils:arm64=1:3.10-1 Downloading dependency 188 of 221: libgnutls-openssl27t64:arm64=3.8.6-2 Downloading dependency 189 of 221: libldap-2.5-0:arm64=2.5.18+dfsg-3+b1 Downloading dependency 190 of 221: base-passwd:arm64=3.6.5 Downloading dependency 191 of 221: gzip:arm64=1.12-1.1 Downloading dependency 192 of 221: libidn2-dev:arm64=2.3.7-2 Downloading dependency 193 of 221: libsystemd0:arm64=256.7-2 Downloading dependency 194 of 221: libacl1:arm64=2.3.2-2 Downloading dependency 195 of 221: libfile-stripnondeterminism-perl:arm64=1.14.0-1 Downloading dependency 196 of 221: libstdc++-14-dev:arm64=14.2.0-7 Downloading dependency 197 of 221: libboost1.83-dev:arm64=1.83.0-3.2 Downloading dependency 198 of 221: libaec0:arm64=1.1.3-1 Downloading dependency 199 of 221: libdebhelper-perl:arm64=13.20 Downloading dependency 200 of 221: automake:arm64=1:1.16.5-1.3 Downloading dependency 201 of 221: libattr1:arm64=1:2.5.2-2 Downloading dependency 202 of 221: libhogweed6t64:arm64=3.10-1 Downloading dependency 203 of 221: hdf5-helpers:arm64=1.10.10+repack-4 Downloading dependency 204 of 221: libcrypt1:arm64=1:4.4.36-5 Downloading dependency 205 of 221: libdebconfclient0:arm64=0.272 Downloading dependency 206 of 221: debhelper:arm64=13.20 Downloading dependency 207 of 221: intltool-debian:arm64=0.35.0+20060710.6 Downloading dependency 208 of 221: libsasl2-2:arm64=2.1.28+dfsg1-8 Downloading dependency 209 of 221: libbrotli1:arm64=1.1.0-2+b4 Downloading dependency 210 of 221: libgdbm6t64:arm64=1.24-2 Downloading dependency 211 of 221: cpp-14-aarch64-linux-gnu:arm64=14.2.0-7 Downloading dependency 212 of 221: gcc-14:arm64=14.2.0-7 Downloading dependency 213 of 221: libarchive13t64:arm64=3.7.4-1 Downloading dependency 214 of 221: libhdf5-fortran-102t64:arm64=1.10.10+repack-4 Downloading dependency 215 of 221: libzstd1:arm64=1.5.6+dfsg-1 Downloading dependency 216 of 221: libuuid1:arm64=2.40.2-9 Downloading dependency 217 of 221: libpipeline1:arm64=1.5.8-1 Downloading dependency 218 of 221: libgomp1:arm64=14.2.0-7 Downloading dependency 219 of 221: libsz2:arm64=1.1.3-1 Downloading dependency 220 of 221: bzip2:arm64=1.0.8-6 Downloading dependency 221 of 221: libgnutls30t64:arm64=3.8.6-2 env --chdir=/srv/rebuilderd/tmp/rebuilderdO8mXN6/out DEB_BUILD_OPTIONS=parallel=8 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1730104920 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildFN18Pt/debrebuild.sbuildrc.t5hS0oFkHWNZ sbuild --build=arm64 --host=arm64 --no-source --arch-any --no-arch-all --binNMU-changelog= mapsembler2 (2.2.4+dfsg1-4+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for arm64; no source changes. * Rebuild for PAC/BTI support -- arm Build Daemon (arm-conova-03) Mon, 28 Oct 2024 08:42:00 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildFN18Pt/debrebuild.tar.hiS4pdUcqo9I --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --starting-build-commands=grep -iq "^Rules-Requires-Root:" "%p/debian/control" || sed -i "1iRules-Requires-Root: no" "%p/debian/control" --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=mapsembler2-2.2.4+dfsg1 /srv/rebuilderd/tmp/rebuilderdO8mXN6/inputs/mapsembler2_2.2.4+dfsg1-4.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3+deb13u1 (16 August 2025) on codethink02-arm64 +==============================================================================+ | mapsembler2 2.2.4+dfsg1-4+b1 (arm64) Mon, 22 Sep 2025 06:10:47 +0000 | +==============================================================================+ Package: mapsembler2 Version: 2.2.4+dfsg1-4+b1 Source Version: 2.2.4+dfsg1-4 Distribution: unstable Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildFN18Pt/debrebuild.tar.hiS4pdUcqo9I to /srv/rebuilderd/tmp/tmp.sbuild.ctX7MwIRUQ... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Mon, 22 Sep 2025 06:10:55 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdO8mXN6/inputs/mapsembler2_2.2.4+dfsg1-4.dsc exists in /srv/rebuilderd/tmp/rebuilderdO8mXN6/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Mon, 22 Sep 2025 06:10:57 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-0wnOcy/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Mon, 22 Sep 2025 06:11:03 +0000 | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in amd64 arm64 kfreebsd-amd64 ppc64el s390x) +------------------------------------------------------------------------------+ | Build environment Mon, 22 Sep 2025 06:11:04 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) arm64 (aarch64) Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-7 gcc-14_14.2.0-7 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 linux-libc-dev_6.11.4-1 Package versions: autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 bc_1.07.1-4 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 cmake_3.30.5-1 cmake-data_3.30.5-1 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-7 cpp-14-aarch64-linux-gnu_14.2.0-7 cpp-aarch64-linux-gnu_4:14.2.0-1 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-7 g++-14-aarch64-linux-gnu_14.2.0-7 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-7 gcc-14-aarch64-linux-gnu_14.2.0-7 gcc-14-base_14.2.0-7 gcc-aarch64-linux-gnu_4:14.2.0-1 gettext_0.22.5-2 gettext-base_0.22.5-2 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hdf5-helpers_1.10.10+repack-4 hostname_3.25 init-system-helpers_1.67 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libaec-dev_1.1.3-1 libaec0_1.1.3-1 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.4-1 libasan8_14.2.0-7 libatomic1_14.2.0-7 libattr1_1:2.5.2-2 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43.1-5 libblkid1_2.40.2-9 libboost-dev_1.83.0.2+b2 libboost1.83-dev_1.83.0-3.2 libbrotli-dev_1.1.0-2+b4 libbrotli1_1.1.0-2+b4 libbz2-1.0_1.0.8-6 libc-bin_2.40-3 libc-dev-bin_2.40-3 libc6_2.40-3 libc6-dev_2.40-3 libcap-ng0_0.8.5-3 libcap2_1:2.66-5 libcc1-0_14.2.0-7 libcom-err2_1.47.1-1 libcppunit-1.15-0_1.15.1-4+b2 libcppunit-dev_1.15.1-4+b2 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-5 libctf0_2.43.1-5 libcurl4-openssl-dev_8.10.1-2 libcurl4t64_8.10.1-2 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.272 libdebhelper-perl_13.20 libdpkg-perl_1.22.11 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10 libexpat1_2.6.3-2 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-14-dev_14.2.0-7 libgcc-s1_14.2.0-7 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgfortran5_14.2.0-7 libgmp-dev_2:6.3.0+dfsg-2+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgmpxx4ldbl_2:6.3.0+dfsg-2+b1 libgnutls-dane0t64_3.8.6-2 libgnutls-openssl27t64_3.8.6-2 libgnutls28-dev_3.8.6-2 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-7 libgprofng0_2.43.1-5 libgssapi-krb5-2_1.21.3-3 libhdf5-103-1t64_1.10.10+repack-4 libhdf5-cpp-103-1t64_1.10.10+repack-4 libhdf5-dev_1.10.10+repack-4 libhdf5-fortran-102t64_1.10.10+repack-4 libhdf5-hl-100t64_1.10.10+repack-4 libhdf5-hl-cpp-100t64_1.10.10+repack-4 libhdf5-hl-fortran-100t64_1.10.10+repack-4 libhogweed6t64_3.10-1 libhwasan0_14.2.0-7 libicu72_72.1-5 libidn2-0_2.3.7-2 libidn2-dev_2.3.7-2 libisl23_0.27-1 libitm1_14.2.0-7 libjansson4_2.14-2+b2 libjpeg-dev_1:2.1.5-3 libjpeg62-turbo_1:2.1.5-3 libjpeg62-turbo-dev_1:2.1.5-3 libjsoncpp26_1.9.6-2 libk5crypto3_1.21.3-3 libkeyutils1_1.6.3-4 libkrb5-3_1.21.3-3 libkrb5support0_1.21.3-3 libldap-2.5-0_2.5.18+dfsg-3+b1 liblsan0_14.2.0-7 liblz4-1_1.9.4-3 liblzma5_5.6.3-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-9 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnghttp2-14_1.63.0-1 libnghttp2-dev_1.63.0-1 libp11-kit-dev_0.25.5-2 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.40_5.40.0-6 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libproc2-0_2:4.0.4-6 libpsl-dev_0.21.2-1.1 libpsl5t64_0.21.2-1.1 libreadline8t64_8.2-5 librhash1_1.4.5-1 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b4 librtmp1_2.4+20151223.gitfa8646d.1-2+b4 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsframe1_2.43.1-5 libsmartcols1_2.40.2-9 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.3.2-2 libssl3t64_3.3.2-2 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 libsystemd0_256.7-2 libsz2_1.1.3-1 libtasn1-6_4.19.0-3+b2 libtasn1-6-dev_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-7 libubsan1_14.2.0-7 libuchardet0_0.0.8-1+b1 libudev1_256.7-2 libunbound8_1.22.0-1 libunistring5_1.2-1 libuuid1_2.40.2-9 libuv1t64_1.48.0-6 libxml2_2.12.7+dfsg+really2.9.14-0.1 libxxhash0_0.8.2-2+b1 libzstd-dev_1.5.6+dfsg-1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.11.4-1 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 nettle-dev_3.10-1 openssl-provider-legacy_3.3.2-2 patch_2.7.6-7 perl_5.40.0-6 perl-base_5.40.0-6 perl-modules-5.40_5.40.0-6 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 procps_2:4.0.4-6 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.11-1 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-9 xz-utils_5.6.3-1 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build Mon, 22 Sep 2025 06:11:04 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mapsembler2 Binary: mapsembler2 Architecture: amd64 arm64 kfreebsd-amd64 ppc64el s390x Version: 2.2.4+dfsg1-4 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille , Étienne Mollier Homepage: http://colibread.inria.fr/mapsembler2/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/mapsembler2 Vcs-Git: https://salsa.debian.org/med-team/mapsembler2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev Package-List: mapsembler2 deb science optional arch=amd64,arm64,kfreebsd-amd64,ppc64el,s390x Checksums-Sha1: a9219b84bbe33544c2c239e148d2df5cd3593ba3 1369588 mapsembler2_2.2.4+dfsg1.orig.tar.xz 34ee1b7875f7a387b82d5722e02250c03abacabb 24464 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz Checksums-Sha256: 44b215f922ed34c3a167eb512012792e7d777df17d3dda6a2c4a5a0959e8b824 1369588 mapsembler2_2.2.4+dfsg1.orig.tar.xz e24f25f87d54b83d0685c102f8f71d694771e696372484835fb827fdc6b21246 24464 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz Files: 5c9add3cf5d9cfbd1c340efe580408e2 1369588 mapsembler2_2.2.4+dfsg1.orig.tar.xz 79133654b404d6857bfc0a5c117242d1 24464 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmEfaZkUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdp1RA/8CcQNm9Rt2n36IFvhbeN3yhIpNriR xBi4sVJkdTLb+7ho9T0/w7oCa/eKNzsFftal8xvlUeFBHdl1kiweFrEfg9s9fLPn f+yOmcHwKxIu5dBAGINz/xekJcATMH54hoDzoMo0VkvydkdPNxz587oyVTQDb9P2 4FmADNf6O6c2yTASy6nRh4/EYPmalzV3GK2yOedU+rloKwY6SpxqgrGrECTsH5yd /aHPuQrWSX0LzvHWgH+ra1bHZZHDQZGHmJkrB2lPHX+2JYFnICB1m84NQWTSSiIZ mxJXL1hX/bxnRg8QUSTwaf13rz0A4cccwBrGuXNb9v6R7ehA6RdYoRDnHP0Jd1OS eT0sSQQ4WQr/+awstq/5TRlFGdVWmu7wSNqHeLRJARtR9Mms04J+N6aOJpgzUt7T 2fQafMWGN6oscwYpX5AMZOaVaNeMSK3nBcYrXOMHe0I6/pKEjD46zzhCRwVrz+ar LJNVN8lFcNvnZ7KsGUcuYI/izkNlDyxgkYC6zwC5/cKNkuRcvgcV7TlU7WYlkuL3 32KnoYpZBIHH/HXAm5ChYNxwyQ0r6PLGT62HaKthOXYOYvkuUasmwpOsW8rQ6H3y qmlH90ggdGFtnRH/bAhuwERZZ0efOPVrjkd6J5f5aE+SUNn19kyPCq86pXRZrniW A31QqU7zRJANEEU= =qNGY -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./mapsembler2_2.2.4+dfsg1-4.dsc: unsupported subcommand dpkg-source: info: extracting mapsembler2 in /build/reproducible-path/mapsembler2-2.2.4+dfsg1 dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg1.orig.tar.xz dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_libs dpkg-source: info: applying run_pipeline dpkg-source: info: applying add_hardening dpkg-source: info: applying skip_mphe dpkg-source: info: applying gcc-5.patch dpkg-source: info: applying libgomp.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying no_std_hash_redefinition.patch dpkg-source: info: applying gcc10.patch dpkg-source: info: applying check_memory.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying gcc11.patch Install fakeroot ---------------- Setup apt archive ----------------- Merged Build-Depends: fakeroot Filtered Build-Depends: fakeroot dpkg-deb: building package 'sbuild-build-depends-fakeroot-dummy' in '/build/reproducible-path/resolver-0wnOcy/apt_archive/sbuild-build-depends-fakeroot-dummy.deb'. Install fakeroot build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 2.2.4+dfsg1-4+b1 +------------------------------------------------------------------------------+ | Starting Timed Build Commands Mon, 22 Sep 2025 06:11:11 +0000 | +------------------------------------------------------------------------------+ grep -iq "^Rules-Requires-Root:" "/build/reproducible-path/mapsembler2-2.2.4+dfsg1/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/reproducible-path/mapsembler2-2.2.4+dfsg1/debian/control" ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- I: Finished running 'grep -iq "^Rules-Requires-Root:" "/build/reproducible-path/mapsembler2-2.2.4+dfsg1/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/reproducible-path/mapsembler2-2.2.4+dfsg1/debian/control"'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1730104920 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package mapsembler2 dpkg-buildpackage: info: source version 2.2.4+dfsg1-4+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by arm Build Daemon (arm-conova-03) dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' rm -rf mapsembler2_extremities/build cd mapsembler2_extend && make clean make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' rm -f mapsembler2_extend/mapsembler_extend cd kissreads_graph && make clean make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' rm -rf kissreads_graph *.o read_coherence_mapsembler/*.o ../minia/*.o make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' rm -f kissreads_graph/mapsembler2_kissreads_graph cd kissreads && make clean make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' rm -rf ./src/*.o kissreads make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' rm -f kissreads/mapsembler2_kissreads dh_clean make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' dh_auto_configure --sourcedirectory=mapsembler2_extremities --builddirectory=mapsembler2_extremities/build cd mapsembler2_extremities/build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:1 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at cmake/FindTR1.cmake:10 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. Call Stack (most recent call first): CMakeLists.txt:26 (include) -- Performing Test SHARED_PTR_USE_TR1_MEMORY -- Performing Test SHARED_PTR_USE_TR1_MEMORY - Success -- Performing Test SHARED_PTR_USE_MEMORY -- Performing Test SHARED_PTR_USE_MEMORY - Success -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP - Success -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP - Success -- gatb-core is here '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core' CMake Deprecation Warning at thirdparty/gatb-core/CMakeLists.txt:4 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- CppUnit: found headers (in /usr/include) but not the library... -- CppUnit NOT FOUND -- Found Perl: /usr/bin/perl (found version "5.40.0") -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:11 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_int128_t_USE__uint128" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:33 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. -- Check size of __uint128_t -- Check size of __uint128_t - done CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:12 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "int128_t_USE__uint128_t" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:34 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. ------------------------------------------------------------------------------------- -- C++ EXTENSIONS WILL BE USED... ------------------------------------------------------------------------------------- -- Options: -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -- SUPPORTED KMER SIZES ARE 32 64 96 128 -- ---------- GATB TOOLS ---------- CMake Deprecation Warning at thirdparty/gatb-core/thirdparty/emphf/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- ---------- GATB EXAMPLES ---------- -- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1 -- Configuring done (4.4s) CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:221 (ADD_DEPENDENCIES): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "hdf5" of target "gatbcore-static" does not exist. This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build dh_auto_build --sourcedirectory=mapsembler2_extremities --builddirectory=mapsembler2_extremities/build cd mapsembler2_extremities/build && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' /usr/bin/cmake -S/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities -B/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/depend make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/base_hash.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankHelpers.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRegistery.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRandom.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitpair_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitstream.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/common.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_generic.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_hem.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan_mmap.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_seq.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/emphf_config.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/gen_synthetic_data.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph_sorter_scan.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph_sorter_seq.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/internal_memory_model.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mmap_memory_model.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mphf.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mphf_hem.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/packed_edge_list.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/packed_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/perfutils.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/ranked_bitpair_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_generic.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_hem.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 13%] Built target emphf_copyasis [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankSplitter.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp [ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp [ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 24%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function ‘gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set&)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:47: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 772 | printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance); | ~^ ~~~~~~~~~~~~~~ | | | | int long int | %ld /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function ‘static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:15: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 566 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function ‘static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:15: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 590 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:30: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 31%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MPHF.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.cpp [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp [ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp [ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 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from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:23: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 68%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ 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/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Progress.cpp [ 72%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND 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-ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::Properties::setInt(const std::string&, const int64_t&)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp:397:43: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 397 | snprintf (buffer, sizeof(buffer), "%lld", value); | ~~~^ ~~~~~ | | | | | long int | long long int | %ld [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 79%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 79%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 82%] Linking CXX static library ../lib/None/libgatbcore.a cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/None/libgatbcore.a "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o" /usr/bin/ranlib ../lib/None/libgatbcore.a make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 82%] Built target gatbcore-static make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/depend make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/depend make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/depend make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/mapsembler2_extremities.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/build make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o [ 89%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o [ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o [ 89%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -MD -MT CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -MF CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o.d -o CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o -MF CMakeFiles/dbginfo.dir/dbginfo.cpp.o.d -o CMakeFiles/dbginfo.dir/dbginfo.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -MD -MT CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -MF CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o.d -o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o -MF CMakeFiles/dbgh5.dir/dbgh5.cpp.o.d -o CMakeFiles/dbgh5.dir/dbgh5.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 93%] Linking CXX executable ../bin/None/dbgh5 cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 ../lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 [ 96%] Linking CXX executable ../bin/None/dbginfo cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/dbginfo.dir/dbginfo.cpp.o -o ../bin/None/dbginfo ../lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 96%] Built target dbgh5 make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 96%] Built target dbginfo [100%] Linking CXX executable mapsembler2_extremities /usr/bin/cmake -E cmake_link_script CMakeFiles/mapsembler2_extremities.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -o mapsembler2_extremities ext/gatb-core/lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [100%] Built target mapsembler2_extremities make[3]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' dh_auto_build --sourcedirectory=mapsembler2_extend -- k=29 cd mapsembler2_extend && make -j8 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' g++ -o ../minia/Pool.o -c ../minia/Pool.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ../minia/Bank.cpp: In member function ‘void Bank::init(char**, int)’: ../minia/Bank.cpp:282:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 282 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function ‘void BinaryBank::open(bool)’: ../minia/Bank.cpp:713:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 713 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function ‘void BinaryReads::open(bool)’: ../minia/Bank.cpp:798:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 798 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function ‘int KmersBuffer::readkmers()’: ../minia/Bank.cpp:988:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 988 | fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bloom.cpp: In member function ‘void Bloom::load(char*)’: ../minia/Bloom.cpp:256:51: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | printf("loading bloom filter from file, nelem %lli \n",nchar); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Bloom.cpp:257:7: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 257 | fread(blooma, sizeof(unsigned char), nchar, file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ../minia/Terminator.cpp: In constructor ‘BranchingTerminator::BranchingTerminator(BinaryBank*, uint64_t, Bloom*, Set*)’: ../minia/Terminator.cpp:275:105: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 275 | fprintf (stderr,"%cExtrapolating the number of branching kmers from the first %dM kmers: %lld",13,(int)ceilf(nb_extrapolation/1024.0/1024.0),estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Terminator.cpp:303:89: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld ../minia/Terminator.cpp:303:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Terminator.cpp: In constructor ‘BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)’: ../minia/Terminator.cpp:337:38: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 337 | fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell),((1<)*1.0)/1024.0/1024.0); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld g++ -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/Set.o -c ../minia/Set.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/Utils.o -c ../minia/Utils.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Set.cpp: In member function ‘void AssocPairedSet::load(char*)’: ../minia/Set.cpp:290:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 290 | fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Utils.cpp: In function ‘uint64_t extrapolate_distinct_kmers_wrapped(long unsigned int, Bank*)’: ../minia/Utils.cpp:434:100: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 434 | if ((NbRead%10000)==0) fprintf (stderr,(char*)"%cExtrapolating number of distinct kmers %lld",13,NbRead); | ~~~^ ~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld ../minia/Utils.cpp: In instantiation of ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’: ../minia/Utils.cpp:167:85: required from here 167 | template Bloom *bloom_create_bloo1(BloomCpt *bloom_counter, bool from_dump); | ^ ../minia/Utils.cpp:121:53: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Utils.cpp:121:79: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Utils.cpp: In function ‘void end_kmer_count_partition(bool, Hash16*)’: ../minia/Utils.cpp:187:14: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 187 | ftruncate(fileno(F_kmercpt_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:199:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&cptk, sizeof(cptk), 1, F_kmercpt_read); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:225:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 225 | ftruncate(fileno(F_kmercpt_read), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ../minia/Utils.cpp: In function ‘char* return_file_name(const char*)’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:970, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:28:16, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:25:7: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:28:16, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:25:7, inlined from ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’ at ../minia/Utils.cpp:127:22: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:28:16, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:25:7, inlined from ‘void bloom_pass_reads_binary(T*, BloomCpt*, char*) [with T = Bloom]’ at ../minia/Utils.cpp:84:29, inlined from ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’ at ../minia/Utils.cpp:151:32: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:28:16, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:25:7, inlined from ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’ at ../minia/Utils.cpp:148:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘void end_kmer_count_partition(bool, Hash16*)’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:28:16, inlined from ‘char* return_file_name(const char*)’ at ../minia/Utils.cpp:25:7, inlined from ‘void end_kmer_count_partition(bool, Hash16*)’ at ../minia/Utils.cpp:196:91: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/SortingCount.cpp: In function ‘void sorting_count(Bank*, char*, int, int, bool, int, bool)’: ../minia/SortingCount.cpp:56:15: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 56 | getcwd(current_path,sizeof(current_path)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:283:15: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 283 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:537:19: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 537 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/SortingCount.cpp:45:25: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 512 [-Wformat-overflow=] 45 | sprintf(p_buf, "%s/%s", temp_dir, ep->d_name); | ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:970, from ../minia/SortingCount.h:1, from ../minia/SortingCount.cpp:1: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void sorting_count(Bank*, char*, int, int, bool, int, bool)’ at ../minia/SortingCount.cpp:45:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 1280 bytes into a destination of size 512 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ../minia/Debloom.cpp: In function ‘int debloom(int, int)’: ../minia/Debloom.cpp:154:89: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 154 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%c Writing positive Bloom Kmers %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld ../minia/Debloom.cpp:158:26: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 158 | fprintf(stderr,"\n%lli kmers written\n",cc); | ~~~^ ~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:191:76: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 191 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%cBuild Hash table %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld ../minia/Debloom.cpp:195:58: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:195:65: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp:208:34: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 208 | fprintf(stderr,"\n%lli false positives written , partition %i \n",n_false_positives,numpart); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:225:81: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 225 | fprintf(stderr,"Total nb false positives stored in the Debloom hashtable %lli \n",n_false_positives); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Debloom.cpp: In function ‘Set* load_false_positives()’: ../minia/Debloom.cpp:280:112: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 280 | if ((NbInsertedKmers%10000)==0) fprintf (stderr,(char*)"%cInsert false positive Kmers in hash table %lld",13,NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld ../minia/Debloom.cpp:284:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 284 | fprintf (stderr,"\nInserted %lld false positive kmers in the hash structure.\n\n",NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld ../minia/Debloom.cpp: In function ‘void print_size_summary(FPSet*)’: ../minia/Debloom.cpp:445:50: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 445 | fprintf(stderr, "Size of the FP table : %lli FP x %d bits = %.2lf MB \n", fp->capacity(), bits_per_FP_element, toMB((double)(size_T1)) ); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:448:47: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 448 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp: In function ‘void print_size_summary(FPSetCascading4*)’: ../minia/Debloom.cpp:465:47: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 465 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp: In function ‘void end_debloom_partition(bool)’: ../minia/Debloom.cpp:29:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 29 | ftruncate(fileno(F_debloom_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o commons.o -c commons.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o IterativeExtensions.o -c IterativeExtensions.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o Fragment_Bank.o -c Fragment_Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o Fragment.o -c Fragment.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o GraphOutput.o -c GraphOutput.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mapsembler_extend ../minia/Pool.o ../minia/Bank.o ../minia/Bloom.o ../minia/Hash16.o ../minia/Terminator.o ../minia/Kmer.o ../minia/Traversal.o ../minia/LinearCounter.o ../minia/Set.o ../minia/Utils.o ../minia/SortingCount.o ../minia/Debloom.o ../minia/OAHash.o commons.o IterativeExtensions.o Fragment_Bank.o Fragment.o GraphOutput.o mapsembler_extend.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ mapsembler_extend.cpp: In function ‘int main(int, char**)’: mapsembler_extend.cpp:145:50: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 145 | printf(" Will use genome_size=%llu\n", genome_size); //TODO format | ~~~^ ~~~~~~~~~~~ | | | | | int64_t {aka long int} | long long unsigned int | %lu mapsembler_extend.cpp:320:76: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 320 | command = string("rm -f ")+string(prefix_trashable)+string("*"); system((char *)command.c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' dh_auto_build --sourcedirectory=kissreads_graph -- k=29 cd kissreads_graph && make -j8 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' g++ -o block_allocator.o -c block_allocator.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o DeBruijnGraph.o -c DeBruijnGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o Fragment.o -c Fragment.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ DeBruijnGraph.cpp: In member function ‘void DBG::index_nodes()’: DeBruijnGraph.cpp:952:41: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 952 | printf("total seeds in fragments %lli size %lli MB \n",total_seeds,total_seeds*sizeof(couple)/1024LL/1024LL); | ~~~^ ~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li g++ -o json.o -c json.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o read_coherence_mapsembler/libchash.o -c read_coherence_mapsembler/libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashFind(HashTable*, u_long)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1227:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1227 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashFindLast(HashTable*)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1232:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1232 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashFirstBucket(HashTable*)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1296:10: note: in expansion of macro ‘LOAD_AND_RETURN’ 1296 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashNextBucket(HashTable*)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1306:10: note: in expansion of macro ‘LOAD_AND_RETURN’ 1306 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)’: read_coherence_mapsembler/libchash.cpp:1413:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1413 | fread(szMagicKey, 1, 4, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1422:4: note: in expansion of macro ‘READ_UL’ 1422 | READ_UL(fp, ht->cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1423:4: note: in expansion of macro ‘READ_UL’ 1423 | READ_UL(fp, ht->cItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1424:4: note: in expansion of macro ‘READ_UL’ 1424 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1427:4: note: in expansion of macro ‘READ_UL’ 1427 | READ_UL(fp, cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1429:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1429 | fread(rgchKeys, 1, cchKey, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1434:7: note: in expansion of macro ‘READ_UL’ 1434 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘u_long SparseRead(FILE*, SparseBin**)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:628:4: note: in expansion of macro ‘READ_UL’ 628 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:633:10: note: in expansion of macro ‘READ_UL’ 633 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ g++ -o read_coherence_mapsembler/couple.o -c read_coherence_mapsembler/couple.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o read_coherence_mapsembler/misc_tools.o -c read_coherence_mapsembler/misc_tools.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o read_coherence_mapsembler/read_groups.o -c read_coherence_mapsembler/read_groups.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o read_coherence_mapsembler/consensus_common.o -c read_coherence_mapsembler/consensus_common.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o read_coherence_mapsembler/list.o -c read_coherence_mapsembler/list.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o read_coherence_mapsembler/read_coherence.o -c read_coherence_mapsembler/read_coherence.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ read_coherence_mapsembler/read_coherence.cpp: In function ‘char** read_coherent_homologs(hash_t, const char*, int, int, int, int, int*)’: read_coherence_mapsembler/read_coherence.cpp:988:39: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 3 has type ‘group_t’ {aka ‘list_*’} [-Wformat=] 988 | "error group %X: recomputed number of substitutions (%d) not matching dynamic number of substitutions (%d) (so i'm glad i coded this test)\n fragment: %s\nconsensus:%s\n", | ~^ | | | unsigned int 989 | current_read_group, number_substitutions, | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} read_coherence_mapsembler/read_coherence.cpp:1002:39: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 3 has type ‘group_t’ {aka ‘list_*’} [-Wformat=] 1002 | "error group %X: recomputed consensus (%s) not matching dynamic consensus (%s) (so i'm glad i coded this test)\n fragment: %s\n", | ~^ | | | unsigned int 1003 | current_read_group, substarters[*nb_consensuses], | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} g++ -o read_coherence_mapsembler/interface_libchash.o -c read_coherence_mapsembler/interface_libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o commons.o -c commons.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 read_coherence_mapsembler/interface_libchash.cpp: In function ‘void iterate_and_fill_offsets(hash_t)’: read_coherence_mapsembler/interface_libchash.cpp:408:36: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 408 | printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); | ~~~^ ~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li read_coherence_mapsembler/interface_libchash.cpp:408:54: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 408 | printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o Loader.o -c Loader.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ReadMapper.o -c ReadMapper.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ReadMapper.cpp: In function ‘uint64_t map_reads(Bank*, std::vector)’: ReadMapper.cpp:38:31: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 38 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:38:56: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 38 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:240:23: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 240 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:240:48: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 240 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld g++ -o kissreads_graph block_allocator.o DeBruijnGraph.o Fragment.o json.o read_coherence_mapsembler/libchash.o read_coherence_mapsembler/couple.o read_coherence_mapsembler/misc_tools.o read_coherence_mapsembler/read_groups.o read_coherence_mapsembler/consensus_common.o read_coherence_mapsembler/list.o read_coherence_mapsembler/read_coherence.o read_coherence_mapsembler/interface_libchash.o commons.o ../minia/Kmer.o ../minia/Bank.o Loader.o ReadMapper.o KissReadsGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' dh_auto_build --sourcedirectory=kissreads -- k=29 cd kissreads && make -j8 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' gcc -o src/coherent_algorithm.o -c src/coherent_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/commons.o -c src/commons.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/couple.o -c src/couple.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/extension_algorithm.o -c src/extension_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/fragment_index.o -c src/fragment_index.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/kissReads.o -c src/kissReads.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/list.o -c src/list.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/outputs.o -c src/outputs.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/interface_libchash.o -c src/interface_libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/libchash.o -c src/libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ src/libchash.c: In function ‘HashFind’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1221:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1221 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashFindLast’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1226:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1226 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashFirstBucket’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1290:10: note: in expansion of macro ‘LOAD_AND_RETURN’ 1290 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashNextBucket’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1300:10: note: in expansion of macro ‘LOAD_AND_RETURN’ 1300 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashDoLoad’: src/libchash.c:1407:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1407 | fread(szMagicKey, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1416:4: note: in expansion of macro ‘READ_UL’ 1416 | READ_UL(fp, ht->cchKey); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1417:4: note: in expansion of macro ‘READ_UL’ 1417 | READ_UL(fp, ht->cItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1418:4: note: in expansion of macro ‘READ_UL’ 1418 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1421:4: note: in expansion of macro ‘READ_UL’ 1421 | READ_UL(fp, cchKey); | ^~~~~~~ src/libchash.c:1423:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1423 | fread(rgchKeys, 1, cchKey, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1428:7: note: in expansion of macro ‘READ_UL’ 1428 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ src/libchash.c: In function ‘SparseRead’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:622:4: note: in expansion of macro ‘READ_UL’ 622 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:627:10: note: in expansion of macro ‘READ_UL’ 627 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ gcc -o kissreads src/coherent_algorithm.o src/commons.o src/couple.o src/extension_algorithm.o src/fragment_index.o src/kissReads.o src/list.o src/outputs.o src/interface_libchash.o src/libchash.o -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -lm -O3 -lz -lgomp ################# # Compilation OK# ################# make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/mapsembler2/ -a debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' mv ./kissreads/kissreads ./kissreads/mapsembler2_kissreads mv ./kissreads_graph/kissreads_graph ./kissreads_graph/mapsembler2_kissreads_graph cp run_mapsembler2_pipeline.sh run_mapsembler2_pipeline dh_install make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'mapsembler2' in '../mapsembler2_2.2.4+dfsg1-4+b1_arm64.deb'. dpkg-deb: building package 'mapsembler2-dbgsym' in '../mapsembler2-dbgsym_2.2.4+dfsg1-4+b1_arm64.deb'. dpkg-genbuildinfo --build=any -O../mapsembler2_2.2.4+dfsg1-4+b1_arm64.buildinfo dpkg-genchanges --build=any -O../mapsembler2_2.2.4+dfsg1-4+b1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-09-22T06:12:24Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Mon, 22 Sep 2025 06:12:25 +0000 | +------------------------------------------------------------------------------+ mapsembler2_2.2.4+dfsg1-4+b1_arm64.changes: ------------------------------------------- Format: 1.8 Date: Mon, 28 Oct 2024 08:42:00 +0000 Source: mapsembler2 (2.2.4+dfsg1-4) Binary: mapsembler2 mapsembler2-dbgsym Binary-Only: yes Architecture: arm64 Version: 2.2.4+dfsg1-4+b1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: arm Build Daemon (arm-conova-03) Description: mapsembler2 - bioinformatics targeted assembly software Changes: mapsembler2 (2.2.4+dfsg1-4+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for arm64; no source changes. * Rebuild for PAC/BTI support Checksums-Sha1: 550243771134205a016dba94d943d99f6223fa8d 2483780 mapsembler2-dbgsym_2.2.4+dfsg1-4+b1_arm64.deb 7508599433e1209b746f3fd58fae16d14753d4da 7622 mapsembler2_2.2.4+dfsg1-4+b1_arm64.buildinfo dca8f42d8d52ea675ad022afe5c54a883a8ccc42 707480 mapsembler2_2.2.4+dfsg1-4+b1_arm64.deb Checksums-Sha256: 3594ad405d5cc2340b8a70058965169487555605d188e8aba1fe78d52e124782 2483780 mapsembler2-dbgsym_2.2.4+dfsg1-4+b1_arm64.deb abd1959e2cb4e3bb11a53c92dbfb0e650610da98c6c007b2430ac6acb2adcb0c 7622 mapsembler2_2.2.4+dfsg1-4+b1_arm64.buildinfo 1a0aae625620d5bf959fe387157180a7304843139a103e7d5f9bf48144ad71bc 707480 mapsembler2_2.2.4+dfsg1-4+b1_arm64.deb Files: dd4fc4dd60ff6e9e06e6900925e97673 2483780 debug optional mapsembler2-dbgsym_2.2.4+dfsg1-4+b1_arm64.deb db987cace1e772bae3849462d7f296f9 7622 science optional mapsembler2_2.2.4+dfsg1-4+b1_arm64.buildinfo b5e24c2b8055ec3dd6b0b296126f9fea 707480 science optional mapsembler2_2.2.4+dfsg1-4+b1_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo Mon, 22 Sep 2025 06:12:26 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: mapsembler2 (2.2.4+dfsg1-4) Binary: mapsembler2 mapsembler2-dbgsym Architecture: arm64 Version: 2.2.4+dfsg1-4+b1 Binary-Only-Changes: mapsembler2 (2.2.4+dfsg1-4+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for arm64; no source changes. * Rebuild for PAC/BTI support . -- arm Build Daemon (arm-conova-03) Mon, 28 Oct 2024 08:42:00 +0000 Checksums-Md5: dd4fc4dd60ff6e9e06e6900925e97673 2483780 mapsembler2-dbgsym_2.2.4+dfsg1-4+b1_arm64.deb b5e24c2b8055ec3dd6b0b296126f9fea 707480 mapsembler2_2.2.4+dfsg1-4+b1_arm64.deb Checksums-Sha1: 550243771134205a016dba94d943d99f6223fa8d 2483780 mapsembler2-dbgsym_2.2.4+dfsg1-4+b1_arm64.deb dca8f42d8d52ea675ad022afe5c54a883a8ccc42 707480 mapsembler2_2.2.4+dfsg1-4+b1_arm64.deb Checksums-Sha256: 3594ad405d5cc2340b8a70058965169487555605d188e8aba1fe78d52e124782 2483780 mapsembler2-dbgsym_2.2.4+dfsg1-4+b1_arm64.deb 1a0aae625620d5bf959fe387157180a7304843139a103e7d5f9bf48144ad71bc 707480 mapsembler2_2.2.4+dfsg1-4+b1_arm64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Mon, 22 Sep 2025 06:12:23 +0000 Build-Path: /build/reproducible-path/mapsembler2-2.2.4+dfsg1 Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.5), bash (= 5.2.32-1+b2), bc (= 1.07.1-4), binutils (= 2.43.1-5), binutils-aarch64-linux-gnu (= 2.43.1-5), binutils-common (= 2.43.1-5), bsdextrautils (= 2.40.2-9), bsdutils (= 1:2.40.2-9), build-essential (= 12.12), bzip2 (= 1.0.8-6), cmake (= 3.30.5-1), cmake-data (= 3.30.5-1), coreutils (= 9.5-1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-7), cpp-14-aarch64-linux-gnu (= 14.2.0-7), cpp-aarch64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-7), g++-14-aarch64-linux-gnu (= 14.2.0-7), g++-aarch64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-7), gcc-14-aarch64-linux-gnu (= 14.2.0-7), gcc-14-base (= 14.2.0-7), gcc-aarch64-linux-gnu (= 4:14.2.0-1), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hdf5-helpers (= 1.10.10+repack-4), hostname (= 3.25), init-system-helpers (= 1.67), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libaec-dev (= 1.1.3-1), libaec0 (= 1.1.3-1), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.7.4-1), libasan8 (= 14.2.0-7), libatomic1 (= 14.2.0-7), libattr1 (= 1:2.5.2-2), libaudit-common (= 1:4.0.1-1), libaudit1 (= 1:4.0.1-1), libbinutils (= 2.43.1-5), libblkid1 (= 2.40.2-9), libboost-dev (= 1.83.0.2+b2), libboost1.83-dev (= 1.83.0-3.2), libbrotli-dev (= 1.1.0-2+b4), libbrotli1 (= 1.1.0-2+b4), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-3), libc-dev-bin (= 2.40-3), libc6 (= 2.40-3), libc6-dev (= 2.40-3), libcap-ng0 (= 0.8.5-3), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-7), libcom-err2 (= 1.47.1-1), libcppunit-1.15-0 (= 1.15.1-4+b2), libcppunit-dev (= 1.15.1-4+b2), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-5), libctf0 (= 2.43.1-5), libcurl4-openssl-dev (= 8.10.1-2), libcurl4t64 (= 8.10.1-2), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.20), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.192-4), libevent-2.1-7t64 (= 2.1.12-stable-10), libexpat1 (= 2.6.3-2), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-14-dev (= 14.2.0-7), libgcc-s1 (= 14.2.0-7), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgfortran5 (= 14.2.0-7), libgmp-dev (= 2:6.3.0+dfsg-2+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgmpxx4ldbl (= 2:6.3.0+dfsg-2+b1), libgnutls-dane0t64 (= 3.8.6-2), libgnutls-openssl27t64 (= 3.8.6-2), libgnutls28-dev (= 3.8.6-2), libgnutls30t64 (= 3.8.6-2), libgomp1 (= 14.2.0-7), libgprofng0 (= 2.43.1-5), libgssapi-krb5-2 (= 1.21.3-3), libhdf5-103-1t64 (= 1.10.10+repack-4), libhdf5-cpp-103-1t64 (= 1.10.10+repack-4), libhdf5-dev (= 1.10.10+repack-4), libhdf5-fortran-102t64 (= 1.10.10+repack-4), libhdf5-hl-100t64 (= 1.10.10+repack-4), libhdf5-hl-cpp-100t64 (= 1.10.10+repack-4), libhdf5-hl-fortran-100t64 (= 1.10.10+repack-4), libhogweed6t64 (= 3.10-1), libhwasan0 (= 14.2.0-7), libicu72 (= 72.1-5), libidn2-0 (= 2.3.7-2), libidn2-dev (= 2.3.7-2), libisl23 (= 0.27-1), libitm1 (= 14.2.0-7), libjansson4 (= 2.14-2+b2), libjpeg-dev (= 1:2.1.5-3), libjpeg62-turbo (= 1:2.1.5-3), libjpeg62-turbo-dev (= 1:2.1.5-3), libjsoncpp26 (= 1.9.6-2), libk5crypto3 (= 1.21.3-3), libkeyutils1 (= 1.6.3-4), libkrb5-3 (= 1.21.3-3), libkrb5support0 (= 1.21.3-3), libldap-2.5-0 (= 2.5.18+dfsg-3+b1), liblsan0 (= 14.2.0-7), liblz4-1 (= 1.9.4-3), liblzma5 (= 5.6.3-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-9), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libncursesw6 (= 6.5-2), libnettle8t64 (= 3.10-1), libnghttp2-14 (= 1.63.0-1), libnghttp2-dev (= 1.63.0-1), libp11-kit-dev (= 0.25.5-2), libp11-kit0 (= 0.25.5-2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-6), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libproc2-0 (= 2:4.0.4-6), libpsl-dev (= 0.21.2-1.1), libpsl5t64 (= 0.21.2-1.1), libreadline8t64 (= 8.2-5), librhash1 (= 1.4.5-1), librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b4), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4), libsasl2-2 (= 2.1.28+dfsg1-8), libsasl2-modules-db (= 2.1.28+dfsg1-8), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-5), libsmartcols1 (= 2.40.2-9), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.3.2-2), libssl3t64 (= 3.3.2-2), libstdc++-14-dev (= 14.2.0-7), libstdc++6 (= 14.2.0-7), libsystemd0 (= 256.7-2), libsz2 (= 1.1.3-1), libtasn1-6 (= 4.19.0-3+b2), libtasn1-6-dev (= 4.19.0-3+b2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-7), libubsan1 (= 14.2.0-7), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.7-2), libunbound8 (= 1.22.0-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-9), libuv1t64 (= 1.48.0-6), libxml2 (= 2.12.7+dfsg+really2.9.14-0.1), libxxhash0 (= 0.8.2-2+b1), libzstd-dev (= 1.5.6+dfsg-1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.11.4-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), nettle-dev (= 3.10-1), openssl-provider-legacy (= 3.3.2-2), patch (= 2.7.6-7), perl (= 5.40.0-6), perl-base (= 5.40.0-6), perl-modules-5.40 (= 5.40.0-6), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-6), readline-common (= 8.2-5), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.11-1), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-9), xz-utils (= 5.6.3-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1730104920" +------------------------------------------------------------------------------+ | Package contents Mon, 22 Sep 2025 06:12:26 +0000 | +------------------------------------------------------------------------------+ mapsembler2-dbgsym_2.2.4+dfsg1-4+b1_arm64.deb --------------------------------------------- new Debian package, version 2.0. size 2483780 bytes: control archive=764 bytes. 544 bytes, 12 lines control 513 bytes, 5 lines md5sums Package: mapsembler2-dbgsym Source: mapsembler2 (2.2.4+dfsg1-4) Version: 2.2.4+dfsg1-4+b1 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 2607 Depends: mapsembler2 (= 2.2.4+dfsg1-4+b1) Section: debug Priority: optional Description: debug symbols for mapsembler2 Build-Ids: 49937991814a648b617e847353fc9fa27686b99e b7cdd63c4fc59940861fc203f183daed4f9cf236 cd9868871d9cd19a1f6de9d6c6fad457b677bd6d e1ff9d5c6d32108c674574db2b49d8de4c074fba drwxr-xr-x root/root 0 2024-10-28 08:42 ./ drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/ drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/lib/ drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/lib/debug/.build-id/49/ -rw-r--r-- root/root 388632 2024-10-28 08:42 ./usr/lib/debug/.build-id/49/937991814a648b617e847353fc9fa27686b99e.debug drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/lib/debug/.build-id/b7/ -rw-r--r-- root/root 747560 2024-10-28 08:42 ./usr/lib/debug/.build-id/b7/cdd63c4fc59940861fc203f183daed4f9cf236.debug drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/lib/debug/.build-id/cd/ -rw-r--r-- root/root 96896 2024-10-28 08:42 ./usr/lib/debug/.build-id/cd/9868871d9cd19a1f6de9d6c6fad457b677bd6d.debug drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/lib/debug/.build-id/e1/ -rw-r--r-- root/root 1382312 2024-10-28 08:42 ./usr/lib/debug/.build-id/e1/ff9d5c6d32108c674574db2b49d8de4c074fba.debug drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/lib/debug/.dwz/aarch64-linux-gnu/ -rw-r--r-- root/root 36784 2024-10-28 08:42 ./usr/lib/debug/.dwz/aarch64-linux-gnu/mapsembler2.debug drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/share/ drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-10-28 08:42 ./usr/share/doc/mapsembler2-dbgsym -> mapsembler2 mapsembler2_2.2.4+dfsg1-4+b1_arm64.deb -------------------------------------- new Debian package, version 2.0. size 707480 bytes: control archive=1876 bytes. 1436 bytes, 28 lines control 2360 bytes, 29 lines md5sums Package: mapsembler2 Source: mapsembler2 (2.2.4+dfsg1-4) Version: 2.2.4+dfsg1-4+b1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 1443 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.3.4), bc Section: science Priority: optional Homepage: http://colibread.inria.fr/mapsembler2/ Description: bioinformatics targeted assembly software Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters). . It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice. . Mapsembler2 may be used for (not limited to): - Validate an assembled sequence (input as starter), e.g. from a de Bruijn graph assembly where read-coherence was not enforced. - Checks if a gene (input as starter) has an homolog in a set of reads - Checks if a known enzyme is present in a metagenomic NGS read set. - Enrich unmappable reads by extending them, possibly making them mappable - Checks what happens at the extremities of a contig - Remove contaminants or symbiont reads from a read set drwxr-xr-x root/root 0 2024-10-28 08:42 ./ drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/ drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/bin/ lrwxrwxrwx root/root 0 2024-10-28 08:42 ./usr/bin/mapsembler2_extend -> mapsembler_extend -rwxr-xr-x root/root 395648 2024-10-28 08:42 ./usr/bin/mapsembler2_extremities -rwxr-xr-x root/root 133288 2024-10-28 08:42 ./usr/bin/mapsembler2_kissreads -rwxr-xr-x root/root 198928 2024-10-28 08:42 ./usr/bin/mapsembler2_kissreads_graph -rwxr-xr-x root/root 199128 2024-10-28 08:42 ./usr/bin/mapsembler_extend -rwxr-xr-x root/root 9585 2024-10-28 08:42 ./usr/bin/run_mapsembler2_pipeline drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/share/ drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/share/doc/mapsembler2/ -rw-r--r-- root/root 52 2014-09-11 15:09 ./usr/share/doc/mapsembler2/EXAMPLE.md -rw-r--r-- root/root 218 2020-10-13 21:18 ./usr/share/doc/mapsembler2/README.Debian -rw-r--r-- root/root 5260 2014-09-11 15:09 ./usr/share/doc/mapsembler2/README.md.gz -rw-r--r-- root/root 268 2020-10-13 21:18 ./usr/share/doc/mapsembler2/README.source -rw-r--r-- root/root 278 2020-10-13 21:18 ./usr/share/doc/mapsembler2/README.test -rw-r--r-- root/root 174 2020-10-13 21:18 ./usr/share/doc/mapsembler2/README.test_data -rw-r--r-- root/root 230 2024-10-28 08:42 ./usr/share/doc/mapsembler2/changelog.Debian.arm64.gz -rw-r--r-- root/root 1219 2024-10-28 08:42 ./usr/share/doc/mapsembler2/changelog.Debian.gz -rw-r--r-- root/root 4017 2021-08-20 08:21 ./usr/share/doc/mapsembler2/copyright drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/share/doc/mapsembler2/examples/ -rw-r--r-- root/root 174 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/README.test_data -rw-r--r-- root/root 229216 2024-10-28 08:42 ./usr/share/doc/mapsembler2/examples/reads1.fa.gz -rw-r--r-- root/root 229914 2024-10-28 08:42 ./usr/share/doc/mapsembler2/examples/reads2.fa.gz -rw-r--r-- root/root 3853 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/ref-mapsembler2_extremities.out.fa -rw-r--r-- root/root 3537 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/ref-reads1_coherent_k_31_c_5_t_1.fasta -rw-r--r-- root/root 0 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/ref-reads1_uncoherent_k_31_c_5_t_1.fasta -rw-r--r-- root/root 25386 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/ref-res_k_31_c_5_t_3_modified_and_covered.json -rw-r--r-- root/root 78 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/ref-res_mapsembler_k_31_c_2_t_1.fasta -rw-r--r-- root/root 83 2014-08-11 09:29 ./usr/share/doc/mapsembler2/examples/starter.fa -rw-r--r-- root/root 2382 2020-10-16 16:38 ./usr/share/doc/mapsembler2/run-unit-test drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/share/man/ drwxr-xr-x root/root 0 2024-10-28 08:42 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2024-10-28 08:42 ./usr/share/man/man1/mapsembler2_extend.1.gz -> mapsembler_extend.1.gz -rw-r--r-- root/root 742 2024-10-28 08:42 ./usr/share/man/man1/mapsembler2_extremities.1.gz -rw-r--r-- root/root 1316 2024-10-28 08:42 ./usr/share/man/man1/mapsembler2_kissreads.1.gz -rw-r--r-- root/root 878 2024-10-28 08:42 ./usr/share/man/man1/mapsembler2_kissreads_graph.1.gz -rw-r--r-- root/root 1033 2024-10-28 08:42 ./usr/share/man/man1/mapsembler_extend.1.gz -rw-r--r-- root/root 1022 2024-10-28 08:42 ./usr/share/man/man1/run_mapsembler2_pipeline.1.gz +------------------------------------------------------------------------------+ | Post Build Mon, 22 Sep 2025 06:12:28 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Mon, 22 Sep 2025 06:12:28 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Mon, 22 Sep 2025 06:12:30 +0000 | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 254712 Build-Time: 73 Distribution: unstable Host Architecture: arm64 Install-Time: 6 Job: /srv/rebuilderd/tmp/rebuilderdO8mXN6/inputs/mapsembler2_2.2.4+dfsg1-4.dsc Machine Architecture: arm64 Package: mapsembler2 Package-Time: 97 Source-Version: 2.2.4+dfsg1-4 Space: 254712 Status: successful Version: 2.2.4+dfsg1-4+b1 -------------------------------------------------------------------------------- Finished at 2025-09-22T06:12:24Z Build needed 00:01:37, 254712k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdO8mXN6/out checking mapsembler2-dbgsym_2.2.4+dfsg1-4+b1_arm64.deb: size differs for mapsembler2-dbgsym_2.2.4+dfsg1-4+b1_arm64.deb